CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 640 & Codon = tTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S640S640FnonsyntCttTt939993980.99989423480-23482

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S640S640FtCttTt93989399All0.001797
S640S640FtCttTt21222122B.1.1.70.0019
S640S640FtCttTt16941694AY.440.010311
S640S640FtCttTt882882AY.40.001373
S640S640FtCttTt411411B.1.20.003619
S640S640FtCttTt255255AY.430.00113
S640S640FtCttTt235235B.1.5170.100342
S640S640FtCttTt227227B.1.617.20.000855
S640S640FtCttTt199199P.10.003135
S640S640FtCttTt190190AY.99.20.01751
S640S640FtCttTt188188AY.1200.00699
S640S640FtCttTt180180AY.1030.001118
S640S640FtCttTt140140B.1.177.120.021238
S640S640FtCttTt133133AY.360.019712
S640S640FtCttTt118118B.1.6370.008623
S640S640FtCttTt104104B.1.10.001887
S640S640FtCttTt100100P.1.10.031766
S640S640FtCttTt9898AY.30.000975
S640S640FtCttTt9797B.1.1.1180.989796
S640S640FtCttTt9595AY.250.000571
S640S640FtCttTt9292B.10.000843
S640S640FtCttTt9090AY.460.009367
S640S640FtCttTt8787B.1.1.2840.009344
S640S640FtCttTt8080P.1.170.012941
S640S640FtCttTt6868C.160.07211
S640S640FtCttTt6565B.1.36.180.027311
S640S640FtCttTt5959B.1.1600.00184
S640S640FtCttTt5151B.1.5260.001199
S640S640FtCttTt4848B.1.1770.000632
S640S640FtCttTt4444C.370.005107
S640S640FtCttTt4141AY.390.001013
S640S640FtCttTt3636C.401
S640S640FtCttTt3030AY.1140.006933
S640S640FtCttTt3030B.1.5950.007829
S640S640FtCttTt2929AY.290.000457
S640S640FtCttTt2929R.10.00261
S640S640FtCttTt2727AY.1190.000953
S640S640FtCttTt2727B.1.1.700.009209
S640S640FtCttTt2424AY.270.001553
S640S640FtCttTt2323B.1.1.5190.000913
S640S640FtCttTt2323B.1.5960.002004
S640S640FtCttTt2121B.1.438.10.002252
S640S640FtCttTt2020AY.4.20.000434
S640S640FtCttTt1919B.1.1.3060.00833
S640S640FtCttTt1919B.1.2430.001322
S640S640FtCttTt1818B.1.2340.002375
S640S640FtCttTt1717AY.50.000351
S640S640FtCttTt1717AY.98.10.000823
S640S640FtCttTt1717B.1.177.600.003713
S640S640FtCttTt1717B.1.3510.000505
S640S640FtCttTt1717B.1.360.00248
S640S640FtCttTt1616B.1.1.460.069869
S640S640FtCttTt1515AY.1020.000398
S640S640FtCttTt1515B.1.177.690.022255
S640S640FtCttTt1414AY.260.000396
S640S640FtCttTt1313B.1.1.2200.024164
S640S640FtCttTt1212B.1.1.3980.03871
S640S640FtCttTt1212B.1.177.440.006227
S640S640FtCttTt1212B.1.4290.000282
S640S640FtCttTt1212B.1.4970.003777
S640S640FtCttTt1111B.1.1.3170.004529
S640S640FtCttTt1111B.1.1390.008065
S640S640FtCttTt1010AY.1000.00046
S640S640FtCttTt1010AY.200.000389
S640S640FtCttTt1010AZ.20.00821
S640S640FtCttTt1010B.1.36.170.004941
S640S640FtCttTt99AY.330.000601
S640S640FtCttTt99B.1.2210.000639
S640S640FtCttTt99B.1.2580.000599
S640S640FtCttTt99B.1.2980.019027
S640S640FtCttTt99P.1.150.002091
S640S640FtCttTt88AY.450.000973
S640S640FtCttTt88AY.46.60.000578
S640S640FtCttTt88AY.470.000249
S640S640FtCttTt88AY.9.10.00067
S640S640FtCttTt88AY.920.002298
S640S640FtCttTt88B.1.1.5250.043716
S640S640FtCttTt88B.1.177.750.008325
S640S640FtCttTt88B.1.177.810.001515
S640S640FtCttTt88B.1.6210.000708
S640S640FtCttTt88P.1.140.000382
S640S640FtCttTt77AY.1130.000997
S640S640FtCttTt77AY.130.001127
S640S640FtCttTt77AY.420.000282
S640S640FtCttTt77AY.510.006364
S640S640FtCttTt77B.1.1.2650.022082
S640S640FtCttTt77B.1.2060.00571
S640S640FtCttTt77B.1.4110.025926
S640S640FtCttTt77C.36.30.003971
S640S640FtCttTt77Q.80.001154
S640S640FtCttTt66B.1.1.370.001157
S640S640FtCttTt66B.1.2410.00487
S640S640FtCttTt66B.1.3110.001647
S640S640FtCttTt66B.1.3690.001711
S640S640FtCttTt66B.1.4220.004874
S640S640FtCttTt55AY.1170.000423
S640S640FtCttTt55AY.160.001898
S640S640FtCttTt55AY.230.000349
S640S640FtCttTt55B0.000639
S640S640FtCttTt55B.1.1.2140.000277
S640S640FtCttTt55B.1.1.280.001556
S640S640FtCttTt55B.1.1.330.002104
S640S640FtCttTt55B.1.4700.007022
S640S640FtCttTt55B.1.617.10.000645
S640S640FtCttTt55B.1.6280.001762
S640S640FtCttTt55D.20.000375
S640S640FtCttTt55P.1.120.00242
S640S640FtCttTt55Q.10.000632
S640S640FtCttTt44AM.40.014286
S640S640FtCttTt44AY.60.000165
S640S640FtCttTt44AY.750.000224
S640S640FtCttTt44B.1.1.3260.007042
S640S640FtCttTt44B.1.1.390.002039
S640S640FtCttTt44B.1.177.860.000734
S640S640FtCttTt33AY.1180.000188
S640S640FtCttTt33AY.1210.000406
S640S640FtCttTt33AY.3.10.000256
S640S640FtCttTt33AY.500.002398
S640S640FtCttTt33B.1.1.10.00098
S640S640FtCttTt33B.1.1.3040.008427
S640S640FtCttTt33B.1.1.4340.001046
S640S640FtCttTt33B.1.160.80.003866
S640S640FtCttTt33B.1.2400.000647
S640S640FtCttTt33B.1.258.170.000312
S640S640FtCttTt33B.1.3360.007317
S640S640FtCttTt33B.1.36.390.006652
S640S640FtCttTt33B.1.4780.035294
S640S640FtCttTt33B.1.5240.004219
S640S640FtCttTt33B.1.5250.000339
S640S640FtCttTt33B.1.5600.013889
S640S640FtCttTt33B.1.9.50.017045
S640S640FtCttTt33C.360.002732
S640S640FtCttTt33L.30.010638
S640S640FtCttTt33P.1.70.000958
S640S640FtCttTt22AE.80.000978
S640S640FtCttTt22AU.30.004219
S640S640FtCttTt22AY.1110.000366
S640S640FtCttTt22AY.120.10.000642
S640S640FtCttTt22AY.240.000862
S640S640FtCttTt22AY.320.001065
S640S640FtCttTt22AY.350.000466
S640S640FtCttTt22AY.39.10.000079
S640S640FtCttTt22AY.46.40.000329
S640S640FtCttTt22AY.550.001835
S640S640FtCttTt22AY.740.000231
S640S640FtCttTt22AY.75.10.000361
S640S640FtCttTt22AY.840.000875
S640S640FtCttTt22AY.9.20.000073
S640S640FtCttTt22B.1.1.1280.014184
S640S640FtCttTt22B.1.1.2160.001781
S640S640FtCttTt22B.1.1.2220.000408
S640S640FtCttTt22B.1.1.2430.008163
S640S640FtCttTt22B.1.1.2940.002532
S640S640FtCttTt22B.1.1.3690.000892
S640S640FtCttTt22B.1.1.3750.02381
S640S640FtCttTt22B.1.1.4370.020833
S640S640FtCttTt22B.1.1.4480.004065
S640S640FtCttTt22B.1.110.30.001437
S640S640FtCttTt22B.1.177.240.002591
S640S640FtCttTt22B.1.177.540.001213
S640S640FtCttTt22B.1.177.770.001452
S640S640FtCttTt22B.1.221.30.001667
S640S640FtCttTt22B.1.2360.004107
S640S640FtCttTt22B.1.30.005236
S640S640FtCttTt22B.1.3500.005865
S640S640FtCttTt22B.1.36.160.002849
S640S640FtCttTt22B.1.3710.002245
S640S640FtCttTt22B.1.3750.001639
S640S640FtCttTt22B.1.4270.000101
S640S640FtCttTt22B.1.4730.038462
S640S640FtCttTt22B.1.5210.00995
S640S640FtCttTt22B.1.5640.000852
S640S640FtCttTt22B.1.5750.000607
S640S640FtCttTt22B.1.5820.000981
S640S640FtCttTt22B.1.5910.021277
S640S640FtCttTt22B.1.619.10.001283
S640S640FtCttTt22B.1.6250.004706
S640S640FtCttTt22P.1.20.002312
S640S640FtCttTt22P.1.60.003891
S640S640FtCttTt22Q.30.00029
S640S640FtCttTt22Q.40.00091
S640S640FtCttTt110.055556
S640S640FtCttTt11A.20.000662
S640S640FtCttTt11A.23.10.000704
S640S640FtCttTt11A.280.002646
S640S640FtCttTt11AD.20.000219
S640S640FtCttTt11AY.1010.00049
S640S640FtCttTt11AY.1100.000113
S640S640FtCttTt11AY.1160.000287
S640S640FtCttTt11AY.120.20.001285
S640S640FtCttTt11AY.120.2.10.000498
S640S640FtCttTt11AY.140.000088
S640S640FtCttTt11AY.23.10.000417
S640S640FtCttTt11AY.29.10.000221
S640S640FtCttTt11AY.340.000097
S640S640FtCttTt11AY.34.10.00051
S640S640FtCttTt11AY.4.2.10.000149
S640S640FtCttTt11AY.4.30.000842
S640S640FtCttTt11AY.46.30.000934
S640S640FtCttTt11AY.46.50.000198
S640S640FtCttTt11AY.5.30.000337
S640S640FtCttTt11AY.5.40.000277
S640S640FtCttTt11AY.520.000814
S640S640FtCttTt11AY.540.000095
S640S640FtCttTt11AY.640.000595
S640S640FtCttTt11AY.650.000533
S640S640FtCttTt11AY.670.000464
S640S640FtCttTt11AY.680.000274
S640S640FtCttTt11AY.690.000187
S640S640FtCttTt11AY.710.000475
S640S640FtCttTt11AY.850.000427
S640S640FtCttTt11AY.870.000833
S640S640FtCttTt11AY.880.000884
S640S640FtCttTt11AY.90.000068
S640S640FtCttTt11AY.940.000443
S640S640FtCttTt11AY.980.000079
S640S640FtCttTt11B.1.1.100.001115
S640S640FtCttTt11B.1.1.1570.000913
S640S640FtCttTt11B.1.1.1740.003378
S640S640FtCttTt11B.1.1.2170.003636
S640S640FtCttTt11B.1.1.2360.006897
S640S640FtCttTt11B.1.1.2690.001353
S640S640FtCttTt11B.1.1.2740.005051
S640S640FtCttTt11B.1.1.2770.000759
S640S640FtCttTt11B.1.1.2790.001121
S640S640FtCttTt11B.1.1.2980.000862
S640S640FtCttTt11B.1.1.3160.000925
S640S640FtCttTt11B.1.1.3720.000689
S640S640FtCttTt11B.1.1.4060.006494
S640S640FtCttTt11B.1.1.4110.014706
S640S640FtCttTt11B.1.1.4290.004608
S640S640FtCttTt11B.1.1.4320.001266
S640S640FtCttTt11B.1.1.4330.001425
S640S640FtCttTt11B.1.1.630.000386
S640S640FtCttTt11B.1.1040.00369
S640S640FtCttTt11B.1.1180.006711
S640S640FtCttTt11B.1.160.300.002976
S640S640FtCttTt11B.1.177.150.000631
S640S640FtCttTt11B.1.177.170.000821
S640S640FtCttTt11B.1.177.330.001645
S640S640FtCttTt11B.1.177.40.000211
S640S640FtCttTt11B.1.177.410.0025
S640S640FtCttTt11B.1.177.430.001477
S640S640FtCttTt11B.1.177.450.000381
S640S640FtCttTt11B.1.177.480.003125
S640S640FtCttTt11B.1.177.580.001332
S640S640FtCttTt11B.1.177.620.001192
S640S640FtCttTt11B.1.177.70.000165
S640S640FtCttTt11B.1.177.80.000752
S640S640FtCttTt11B.1.177.90.001332
S640S640FtCttTt11B.1.1890.004292
S640S640FtCttTt11B.1.1950.005025
S640S640FtCttTt11B.1.220.001318
S640S640FtCttTt11B.1.2370.004975
S640S640FtCttTt11B.1.2790.000514
S640S640FtCttTt11B.1.3050.002151
S640S640FtCttTt11B.1.3090.047619
S640S640FtCttTt11B.1.3490.000715
S640S640FtCttTt11B.1.351.20.000303
S640S640FtCttTt11B.1.36.210.00216
S640S640FtCttTt11B.1.36.290.000517
S640S640FtCttTt11B.1.36.80.001
S640S640FtCttTt11B.1.3620.001541
S640S640FtCttTt11B.1.3670.000792
S640S640FtCttTt11B.1.3890.001002
S640S640FtCttTt11B.1.3910.001127
S640S640FtCttTt11B.1.4040.001302
S640S640FtCttTt11B.1.4090.000781
S640S640FtCttTt11B.1.428.30.012821
S640S640FtCttTt11B.1.4520.013699
S640S640FtCttTt11B.1.4560.003268
S640S640FtCttTt11B.1.4680.005714
S640S640FtCttTt11B.1.4850.014925
S640S640FtCttTt11B.1.5060.02381
S640S640FtCttTt11B.1.5090.000866
S640S640FtCttTt11B.1.5990.00365
S640S640FtCttTt11B.1.6020.006536
S640S640FtCttTt11B.1.760.011364
S640S640FtCttTt11B.400.000364
S640S640FtCttTt11C.37.10.002618
S640S640FtCttTt11P.1.130.000898
S640S640FtCttTt11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.