CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 64 | W64R | nonsyn | Tgg | Agg | 1238 | 903 | 0.729402 | 21752-21754 | |
S | 64 | W64R | nonsyn | Tgg | Cgg | 1238 | 334 | 0.26979 | 21752-21754 | |
S | 64 | W64R | nonsyn | TgG | AgA | 1238 | 1 | 0.000807754 | 21752-21754 | |
S | 64 | W64del | del | TGG | --- | 1118 | 1118 | 1 | 21752-21754 | |
S | 64 | W64C | nonsyn | tgG | tgT | 674 | 664 | 0.985163 | 21752-21754 | |
S | 64 | W64C | nonsyn | tgG | tgC | 674 | 10 | 0.0148368 | 21752-21754 | |
S | 64 | W64L | nonsyn | tGg | tTg | 402 | 401 | 0.997512 | 21752-21754 | |
S | 64 | W64L | nonsyn | TGg | CTg | 402 | 1 | 0.00248756 | 21752-21754 | |
S | 64 | W64X | nonsyn | tGg | tAg | 114 | 102 | 0.894737 | 21752-21754 | |
S | 64 | W64X | nonsyn | tgG | tgA | 114 | 12 | 0.105263 | 21752-21754 | |
S | 64 | W64G | nonsyn | Tgg | Ggg | 39 | 37 | 0.948718 | 21752-21754 | |
S | 64 | W64G | nonsyn | TgG | GgC | 39 | 1 | 0.025641 | 21752-21754 | |
S | 64 | W64G | nonsyn | TgG | GgT | 39 | 1 | 0.025641 | 21752-21754 | |
S | 64 | W64S | nonsyn | tGg | tCg | 34 | 27 | 0.794118 | 21752-21754 | |
S | 64 | W64S | nonsyn | TgG | AgC | 34 | 6 | 0.176471 | 21752-21754 | |
S | 64 | W64S | nonsyn | tGG | tCC | 34 | 1 | 0.0294118 | 21752-21754 | |
S | 64 | W64del1 | del | tGG | tA- | 27 | 10 | 0.37037 | 21752-21754 | |
S | 64 | W64del1 | del | tGg | t-g | 27 | 5 | 0.185185 | 21752-21754 | |
S | 64 | W64del1 | del | tGG | t-N | 27 | 4 | 0.148148 | 21752-21754 | |
S | 64 | W64del1 | del | tgG | tg- | 27 | 3 | 0.111111 | 21752-21754 | |
S | 64 | W64del1 | del | tGG | t-A | 27 | 3 | 0.111111 | 21752-21754 | |
S | 64 | W64del1 | del | TGG | -NN | 27 | 2 | 0.0740741 | 21752-21754 | |
S | 64 | W64del2 | del | tGG | t-- | 16 | 14 | 0.875 | 21752-21754 | |
S | 64 | W64del2 | del | TGg | --g | 16 | 1 | 0.0625 | 21752-21754 | |
S | 64 | W64del2 | del | TGG | --N | 16 | 1 | 0.0625 | 21752-21754 | |
S | 64 | W64F | nonsyn | tGG | tTT | 13 | 13 | 1 | 21752-21754 | |
S | 64 | W64K | nonsyn | TGg | AAg | 13 | 13 | 1 | 21752-21754 | |
S | 64 | W64E | nonsyn | TGg | GAg | 9 | 9 | 1 | 21752-21754 | |
S | 64 | W64M | nonsyn | TGg | ATg | 8 | 8 | 1 | 21752-21754 | |
S | 64 | W64A | nonsyn | TGG | GCC | 2 | 1 | 0.5 | 21752-21754 | |
S | 64 | W64A | nonsyn | TGg | GCg | 2 | 1 | 0.5 | 21752-21754 | |
S | 64 | W64P | nonsyn | TGg | CCg | 1 | 1 | 1 | 21752-21754 | |
S | 64 | W64T | nonsyn | TGg | ACg | 1 | 1 | 1 | 21752-21754 | |
S | 64 | W64Q | nonsyn | TGg | CAg | 1 | 1 | 1 | 21752-21754 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 64 | W64R | Tgg | Agg | 903 | 1238 | All | 0.000173 |
S | 64 | W64R | Tgg | Cgg | 334 | 1238 | All | 0.000064 |
S | 64 | W64R | TgG | AgA | 1 | 1238 | All | 0 |
S | 64 | W64del | TGG | --- | 1118 | 1118 | All | 0.000214 |
S | 64 | W64C | tgG | tgT | 664 | 674 | All | 0.000127 |
S | 64 | W64C | tgG | tgC | 10 | 674 | All | 0.000002 |
S | 64 | W64L | tGg | tTg | 401 | 402 | All | 0.000077 |
S | 64 | W64L | TGg | CTg | 1 | 402 | All | 0 |
S | 64 | W64R | Tgg | Agg | 399 | 399 | B.1.627 | 0.806061 |
S | 64 | W64R | Tgg | Cgg | 211 | 352 | B.1.1.7 | 0.000189 |
S | 64 | W64R | Tgg | Agg | 141 | 352 | B.1.1.7 | 0.000126 |
S | 64 | W64del | TGG | --- | 282 | 282 | C.37 | 0.03273 |
S | 64 | W64C | tgG | tgT | 176 | 176 | B.1.177.21 | 0.013459 |
S | 64 | W64X | tGg | tAg | 102 | 114 | All | 0.00002 |
S | 64 | W64X | tgG | tgA | 12 | 114 | All | 0.000002 |
S | 64 | W64del | TGG | --- | 109 | 109 | AY.43 | 0.000483 |
S | 64 | W64R | Tgg | Agg | 109 | 109 | C.38 | 0.879032 |
S | 64 | W64del | TGG | --- | 79 | 79 | B.1.617.2 | 0.000297 |
S | 64 | W64L | tGg | tTg | 78 | 78 | B.1.1.7 | 0.00007 |
S | 64 | W64C | tgG | tgT | 74 | 74 | AY.46.3 | 0.069094 |
S | 64 | W64del | TGG | --- | 67 | 67 | B.1.1.7 | 0.00006 |
S | 64 | W64del | TGG | --- | 66 | 66 | AY.4 | 0.000103 |
S | 64 | W64C | tgG | tgT | 65 | 65 | U.2 | 0.570175 |
S | 64 | W64X | tGg | tAg | 60 | 60 | B.1.1.7 | 0.000054 |
S | 64 | W64R | Tgg | Agg | 56 | 56 | P.3 | 0.089314 |
S | 64 | W64C | tgG | tgT | 50 | 50 | AY.43 | 0.000222 |
S | 64 | W64C | tgG | tgT | 47 | 47 | B.1.1.7 | 0.000042 |
S | 64 | W64del | TGG | --- | 43 | 43 | AY.44 | 0.000262 |
S | 64 | W64C | tgG | tgT | 42 | 42 | AY.103 | 0.000261 |
S | 64 | W64del | TGG | --- | 42 | 42 | AY.25 | 0.000253 |
S | 64 | W64G | Tgg | Ggg | 37 | 39 | All | 0.000007 |
S | 64 | W64G | TgG | GgT | 1 | 39 | All | 0 |
S | 64 | W64G | TgG | GgC | 1 | 39 | All | 0 |
S | 64 | W64C | tgG | tgT | 37 | 38 | AY.4 | 0.000058 |
S | 64 | W64C | tgG | tgC | 1 | 38 | AY.4 | 0.000002 |
S | 64 | W64L | tGg | tTg | 38 | 38 | B.1.617.2 | 0.000143 |
S | 64 | W64S | tGg | tCg | 27 | 34 | All | 0.000005 |
S | 64 | W64S | TgG | AgC | 6 | 34 | All | 0.000001 |
S | 64 | W64S | tGG | tCC | 1 | 34 | All | 0 |
S | 64 | W64R | Tgg | Agg | 31 | 31 | B.1.596 | 0.002701 |
S | 64 | W64del | TGG | --- | 30 | 30 | AY.9 | 0.002028 |
S | 64 | W64R | Tgg | Cgg | 25 | 30 | B.1.2 | 0.00022 |
S | 64 | W64R | Tgg | Agg | 5 | 30 | B.1.2 | 0.000044 |
S | 64 | W64L | tGg | tTg | 29 | 29 | AY.43 | 0.000128 |
S | 64 | W64del1 | tGG | tA- | 10 | 27 | All | 0.000002 |
S | 64 | W64del1 | tGg | t-g | 5 | 27 | All | 0.000001 |
S | 64 | W64del1 | tGG | t-N | 4 | 27 | All | 0.000001 |
S | 64 | W64del1 | tGG | t-A | 3 | 27 | All | 0.000001 |
S | 64 | W64del1 | tgG | tg- | 3 | 27 | All | 0.000001 |
S | 64 | W64del1 | TGG | -NN | 2 | 27 | All | 0 |
S | 64 | W64R | Tgg | Agg | 23 | 27 | B.1.617.2 | 0.000087 |
S | 64 | W64R | Tgg | Cgg | 4 | 27 | B.1.617.2 | 0.000015 |
S | 64 | W64L | tGg | tTg | 26 | 26 | AY.4 | 0.00004 |
S | 64 | W64R | Tgg | Cgg | 12 | 24 | B.1 | 0.00011 |
S | 64 | W64R | Tgg | Agg | 12 | 24 | B.1 | 0.00011 |
S | 64 | W64L | tGg | tTg | 23 | 23 | AY.39 | 0.000568 |
S | 64 | W64C | tgG | tgT | 23 | 23 | AY.69 | 0.004293 |
S | 64 | W64del | TGG | --- | 20 | 20 | AY.103 | 0.000124 |
S | 64 | W64del | TGG | --- | 20 | 20 | AY.3 | 0.000199 |
S | 64 | W64del | TGG | --- | 17 | 17 | AY.102 | 0.000451 |
S | 64 | W64C | tgG | tgT | 17 | 17 | AY.3 | 0.000169 |
S | 64 | W64del2 | tGG | t-- | 14 | 16 | All | 0.000003 |
S | 64 | W64del2 | TGG | --N | 1 | 16 | All | 0 |
S | 64 | W64del2 | TGg | --g | 1 | 16 | All | 0 |
S | 64 | W64L | tGg | tTg | 16 | 16 | B.1.240.2 | 0.484848 |
S | 64 | W64X | tGg | tAg | 15 | 15 | AZ.2 | 0.012315 |
S | 64 | W64L | tGg | tTg | 15 | 15 | B.1 | 0.000137 |
S | 64 | W64del | TGG | --- | 15 | 15 | B.1.1 | 0.000272 |
S | 64 | W64S | tGg | tCg | 14 | 14 | B.1.1.7 | 0.000013 |
S | 64 | W64del1 | tGG | tA- | 7 | 14 | B.1.1.7 | 0.000006 |
S | 64 | W64del1 | tGG | t-N | 3 | 14 | B.1.1.7 | 0.000003 |
S | 64 | W64del1 | tGg | t-g | 2 | 14 | B.1.1.7 | 0.000002 |
S | 64 | W64del1 | tGG | t-A | 1 | 14 | B.1.1.7 | 0.000001 |
S | 64 | W64del1 | tgG | tg- | 1 | 14 | B.1.1.7 | 0.000001 |
S | 64 | W64R | Tgg | Cgg | 12 | 14 | B.1.638 | 0.631579 |
S | 64 | W64R | Tgg | Agg | 2 | 14 | B.1.638 | 0.105263 |
S | 64 | W64F | tGG | tTT | 13 | 13 | All | 0.000002 |
S | 64 | W64K | TGg | AAg | 13 | 13 | All | 0.000002 |
S | 64 | W64R | Tgg | Agg | 13 | 13 | AY.33 | 0.000868 |
S | 64 | W64del | TGG | --- | 13 | 13 | B.1.177 | 0.000171 |
S | 64 | W64L | tGg | tTg | 12 | 12 | AY.103 | 0.000075 |
S | 64 | W64del | TGG | --- | 12 | 12 | AY.5 | 0.000248 |
S | 64 | W64C | tgG | tgT | 12 | 12 | B.1.617.2 | 0.000045 |
S | 64 | W64C | tgG | tgT | 10 | 11 | AY.25 | 0.00006 |
S | 64 | W64C | tgG | tgC | 1 | 11 | AY.25 | 0.000006 |
S | 64 | W64del | TGG | --- | 11 | 11 | AY.26 | 0.000311 |
S | 64 | W64R | Tgg | Cgg | 11 | 11 | AY.26 | 0.000311 |
S | 64 | W64del | TGG | --- | 11 | 11 | AY.34.1 | 0.005609 |
S | 64 | W64F | tGG | tTT | 11 | 11 | AY.5 | 0.000227 |
S | 64 | W64C | tgG | tgT | 11 | 11 | B.1.1.214 | 0.00061 |
S | 64 | W64X | tGg | tAg | 8 | 10 | AY.4 | 0.000012 |
S | 64 | W64X | tgG | tgA | 2 | 10 | AY.4 | 0.000003 |
S | 64 | W64L | tGg | tTg | 10 | 10 | AY.44 | 0.000061 |
S | 64 | W64R | Tgg | Agg | 10 | 10 | B | 0.001278 |
S | 64 | W64L | tGg | tTg | 10 | 10 | B.1.2 | 0.000088 |
S | 64 | W64E | TGg | GAg | 9 | 9 | All | 0.000002 |
S | 64 | W64del | TGG | --- | 9 | 9 | AY.4.5 | 0.000967 |
S | 64 | W64R | Tgg | Cgg | 5 | 9 | AY.43 | 0.000022 |
S | 64 | W64R | Tgg | Agg | 4 | 9 | AY.43 | 0.000018 |
S | 64 | W64del | TGG | --- | 9 | 9 | B.1.429 | 0.000212 |
S | 64 | W64M | TGg | ATg | 8 | 8 | All | 0.000002 |
S | 64 | W64del | TGG | --- | 8 | 8 | AY.101 | 0.003923 |
S | 64 | W64L | tGg | tTg | 8 | 8 | AY.26 | 0.000226 |
S | 64 | W64del | TGG | --- | 8 | 8 | AY.47 | 0.000249 |
S | 64 | W64del | TGG | --- | 8 | 8 | AY.98 | 0.000632 |
S | 64 | W64del | TGG | --- | 8 | 8 | B.1.177.86 | 0.001468 |
S | 64 | W64C | tgG | tgT | 8 | 8 | B.1.517 | 0.003416 |
S | 64 | W64L | tGg | tTg | 7 | 7 | AY.102 | 0.000186 |
S | 64 | W64R | Tgg | Cgg | 4 | 7 | AY.3 | 0.00004 |
S | 64 | W64R | Tgg | Agg | 3 | 7 | AY.3 | 0.00003 |
S | 64 | W64del | TGG | --- | 7 | 7 | AY.42 | 0.000282 |
S | 64 | W64del | TGG | --- | 7 | 7 | AY.46 | 0.000729 |
S | 64 | W64del | TGG | --- | 7 | 7 | B.1 | 0.000064 |
S | 64 | W64L | tGg | tTg | 7 | 7 | B.1.177 | 0.000092 |
S | 64 | W64L | tGg | tTg | 7 | 7 | B.1.177.57 | 0.001967 |
S | 64 | W64C | tgG | tgT | 7 | 7 | B.1.2 | 0.000062 |
S | 64 | W64L | tGg | tTg | 7 | 7 | B.1.258 | 0.000466 |
S | 64 | W64R | Tgg | Agg | 7 | 7 | Q.1 | 0.000884 |
S | 64 | W64del | TGG | --- | 6 | 6 | AY.100 | 0.000276 |
S | 64 | W64R | Tgg | Cgg | 5 | 6 | AY.103 | 0.000031 |
S | 64 | W64R | Tgg | Agg | 1 | 6 | AY.103 | 0.000006 |
S | 64 | W64L | tGg | tTg | 6 | 6 | AY.118 | 0.000376 |
S | 64 | W64del | TGG | --- | 6 | 6 | AY.121 | 0.000812 |
S | 64 | W64C | tgG | tgT | 6 | 6 | AY.26 | 0.00017 |
S | 64 | W64R | Tgg | Agg | 3 | 6 | AY.44 | 0.000018 |
S | 64 | W64R | Tgg | Cgg | 3 | 6 | AY.44 | 0.000018 |
S | 64 | W64del | TGG | --- | 6 | 6 | AY.45 | 0.00073 |
S | 64 | W64C | tgG | tgT | 6 | 6 | B.1.1.56 | 0.107143 |
S | 64 | W64M | TGg | ATg | 6 | 6 | B.1.1.7 | 0.000005 |
S | 64 | W64G | Tgg | Ggg | 6 | 6 | P.1 | 0.000095 |
S | 64 | W64del | TGG | --- | 6 | 6 | P.1 | 0.000095 |
S | 64 | W64R | Tgg | Agg | 5 | 5 | AY.14 | 0.00044 |
S | 64 | W64L | tGg | tTg | 5 | 5 | AY.25 | 0.00003 |
S | 64 | W64S | TgG | AgC | 5 | 5 | AY.30 | 0.001979 |
S | 64 | W64del | TGG | --- | 5 | 5 | AY.33 | 0.000334 |
S | 64 | W64S | tGg | tCg | 5 | 5 | AY.4 | 0.000008 |
S | 64 | W64R | Tgg | Agg | 3 | 5 | AY.4 | 0.000005 |
S | 64 | W64R | Tgg | Cgg | 2 | 5 | AY.4 | 0.000003 |
S | 64 | W64C | tgG | tgT | 5 | 5 | AY.44 | 0.00003 |
S | 64 | W64del | TGG | --- | 5 | 5 | AY.9.2 | 0.000184 |
S | 64 | W64C | tgG | tgT | 5 | 5 | B.1 | 0.000046 |
S | 64 | W64G | Tgg | Ggg | 5 | 5 | B.1.1.7 | 0.000004 |
S | 64 | W64del | TGG | --- | 5 | 5 | B.1.2 | 0.000044 |
S | 64 | W64E | TGg | GAg | 5 | 5 | P.1 | 0.000079 |
S | 64 | W64L | tGg | tTg | 5 | 5 | P.1.15 | 0.001162 |
S | 64 | W64L | tGg | tTg | 4 | 4 | 0.222222 | |
S | 64 | W64del | TGG | --- | 4 | 4 | 0.222222 | |
S | 64 | W64R | Tgg | Cgg | 4 | 4 | AB.1 | 0.032787 |
S | 64 | W64R | Tgg | Cgg | 3 | 4 | AY.102 | 0.00008 |
S | 64 | W64R | Tgg | Agg | 1 | 4 | AY.102 | 0.000027 |
S | 64 | W64C | tgG | tgT | 4 | 4 | AY.116 | 0.001147 |
S | 64 | W64del | TGG | --- | 4 | 4 | AY.119 | 0.000141 |
S | 64 | W64del | TGG | --- | 4 | 4 | AY.20 | 0.000155 |
S | 64 | W64R | Tgg | Agg | 4 | 4 | AY.30 | 0.001583 |
S | 64 | W64del | TGG | --- | 4 | 4 | AY.39 | 0.000099 |
S | 64 | W64del2 | tGG | t-- | 4 | 4 | AY.44 | 0.000024 |
S | 64 | W64X | tGg | tAg | 3 | 4 | AY.5 | 0.000062 |
S | 64 | W64X | tgG | tgA | 1 | 4 | AY.5 | 0.000021 |
S | 64 | W64del | TGG | --- | 4 | 4 | AY.61 | 0.000419 |
S | 64 | W64R | Tgg | Cgg | 2 | 4 | AY.69 | 0.000373 |
S | 64 | W64R | Tgg | Agg | 1 | 4 | AY.69 | 0.000187 |
S | 64 | W64R | TgG | AgA | 1 | 4 | AY.69 | 0.000187 |
S | 64 | W64del | TGG | --- | 4 | 4 | AY.85 | 0.001709 |
S | 64 | W64del2 | tGG | t-- | 4 | 4 | AY.9 | 0.00027 |
S | 64 | W64L | tGg | tTg | 4 | 4 | AY.9.1 | 0.000335 |
S | 64 | W64del | TGG | --- | 4 | 4 | AY.98.1 | 0.000194 |
S | 64 | W64del | TGG | --- | 4 | 4 | AY.99.2 | 0.000369 |
S | 64 | W64del | TGG | --- | 4 | 4 | B.1.108 | 0.023256 |
S | 64 | W64del | TGG | --- | 4 | 4 | B.1.160 | 0.000125 |
S | 64 | W64L | tGg | tTg | 4 | 4 | B.1.160 | 0.000125 |
S | 64 | W64R | Tgg | Agg | 4 | 4 | B.1.177 | 0.000053 |
S | 64 | W64del | TGG | --- | 4 | 4 | B.1.221 | 0.000284 |
S | 64 | W64L | tGg | tTg | 4 | 4 | B.1.429 | 0.000094 |
S | 64 | W64L | tGg | tTg | 4 | 4 | B.1.575 | 0.001214 |
S | 64 | W64R | Tgg | Agg | 4 | 4 | P.1 | 0.000063 |
S | 64 | W64X | tGg | tAg | 4 | 4 | P.1 | 0.000063 |
S | 64 | W64R | Tgg | Agg | 3 | 3 | AY.106 | 0.001005 |
S | 64 | W64del | TGG | --- | 3 | 3 | AY.113 | 0.000427 |
S | 64 | W64del | TGG | --- | 3 | 3 | AY.118 | 0.000188 |
S | 64 | W64del | TGG | --- | 3 | 3 | AY.12 | 0.000948 |
S | 64 | W64del | TGG | --- | 3 | 3 | AY.120 | 0.000112 |
S | 64 | W64C | tgG | tgC | 3 | 3 | AY.30 | 0.001187 |
S | 64 | W64del | TGG | --- | 3 | 3 | AY.38 | 0.001498 |
S | 64 | W64R | Tgg | Agg | 2 | 3 | AY.39 | 0.000049 |
S | 64 | W64R | Tgg | Cgg | 1 | 3 | AY.39 | 0.000025 |
S | 64 | W64del | TGG | --- | 3 | 3 | AY.39.1 | 0.000119 |
S | 64 | W64R | Tgg | Agg | 3 | 3 | AY.61 | 0.000314 |
S | 64 | W64del | TGG | --- | 3 | 3 | AY.75 | 0.000168 |
S | 64 | W64del | TGG | --- | 3 | 3 | AY.75.1 | 0.000541 |
S | 64 | W64R | Tgg | Agg | 3 | 3 | AY.75.1 | 0.000541 |
S | 64 | W64del | TGG | --- | 3 | 3 | AY.9.1 | 0.000251 |
S | 64 | W64del1 | tGG | t-A | 2 | 3 | AZ.2 | 0.001642 |
S | 64 | W64del1 | tGG | tA- | 1 | 3 | AZ.2 | 0.000821 |
S | 64 | W64C | tgG | tgT | 3 | 3 | B.1.1 | 0.000054 |
S | 64 | W64G | Tgg | Ggg | 3 | 3 | B.1.1 | 0.000054 |
S | 64 | W64G | Tgg | Ggg | 3 | 3 | B.1.1.1 | 0.00098 |
S | 64 | W64C | tgG | tgT | 3 | 3 | B.1.1.294 | 0.003797 |
S | 64 | W64C | tgG | tgC | 2 | 3 | B.1.1.33 | 0.000842 |
S | 64 | W64S | TgG | AgC | 1 | 3 | B.1.1.33 | 0.000421 |
S | 64 | W64C | tgG | tgT | 1 | 3 | B.1.1.33 | 0.000421 |
S | 64 | W64S | tGg | tCg | 1 | 3 | B.1.1.33 | 0.000421 |
S | 64 | W64S | tGG | tCC | 1 | 3 | B.1.1.33 | 0.000421 |
S | 64 | W64L | tGg | tTg | 3 | 3 | B.1.1.70 | 0.001023 |
S | 64 | W64C | tgG | tgT | 3 | 3 | B.1.234 | 0.000396 |
S | 64 | W64L | tGg | tTg | 3 | 3 | B.1.36 | 0.000438 |
S | 64 | W64L | tGg | tTg | 3 | 3 | B.1.438.1 | 0.000322 |
S | 64 | W64L | tGg | tTg | 3 | 3 | B.1.499 | 0.003151 |
S | 64 | W64del | TGG | --- | 3 | 3 | B.1.525 | 0.000339 |
S | 64 | W64L | tGg | tTg | 3 | 3 | B.1.526 | 0.000071 |
S | 64 | W64R | Tgg | Agg | 2 | 3 | B.1.526 | 0.000047 |
S | 64 | W64R | Tgg | Cgg | 1 | 3 | B.1.526 | 0.000024 |
S | 64 | W64L | tGg | tTg | 3 | 3 | B.1.582 | 0.001472 |
S | 64 | W64L | tGg | tTg | 3 | 3 | B.3 | 0.002492 |
S | 64 | W64R | Tgg | Agg | 2 | 3 | C.37 | 0.000232 |
S | 64 | W64R | Tgg | Cgg | 1 | 3 | C.37 | 0.000116 |
S | 64 | W64A | TGG | GCC | 1 | 2 | All | 0 |
S | 64 | W64A | TGg | GCg | 1 | 2 | All | 0 |
S | 64 | W64del | TGG | --- | 2 | 2 | AY.108 | 0.002205 |
S | 64 | W64del | TGG | --- | 2 | 2 | AY.111 | 0.000366 |
S | 64 | W64del | TGG | --- | 2 | 2 | AY.117 | 0.000169 |
S | 64 | W64R | Tgg | Cgg | 2 | 2 | AY.118 | 0.000125 |
S | 64 | W64R | Tgg | Agg | 1 | 2 | AY.119 | 0.000035 |
S | 64 | W64R | Tgg | Cgg | 1 | 2 | AY.119 | 0.000035 |
S | 64 | W64X | tGg | tAg | 1 | 2 | AY.120 | 0.000037 |
S | 64 | W64X | tgG | tgA | 1 | 2 | AY.120 | 0.000037 |
S | 64 | W64L | tGg | tTg | 2 | 2 | AY.20 | 0.000078 |
S | 64 | W64L | tGg | tTg | 2 | 2 | AY.23 | 0.000139 |
S | 64 | W64R | Tgg | Cgg | 2 | 2 | AY.25 | 0.000012 |
S | 64 | W64L | tGg | tTg | 2 | 2 | AY.29 | 0.000032 |
S | 64 | W64C | tgG | tgT | 2 | 2 | AY.29 | 0.000032 |
S | 64 | W64S | tGg | tCg | 2 | 2 | AY.3 | 0.00002 |
S | 64 | W64del | TGG | --- | 2 | 2 | AY.3.1 | 0.000171 |
S | 64 | W64L | tGg | tTg | 2 | 2 | AY.33 | 0.000134 |
S | 64 | W64G | Tgg | Ggg | 2 | 2 | AY.39.1 | 0.000079 |
S | 64 | W64G | Tgg | Ggg | 2 | 2 | AY.4 | 0.000003 |
S | 64 | W64C | tgG | tgT | 2 | 2 | AY.4.2 | 0.000043 |
S | 64 | W64X | tGg | tAg | 2 | 2 | AY.43 | 0.000009 |
S | 64 | W64del1 | tGg | t-g | 1 | 2 | AY.43 | 0.000004 |
S | 64 | W64del1 | tgG | tg- | 1 | 2 | AY.43 | 0.000004 |
S | 64 | W64del1 | tGG | tA- | 1 | 2 | AY.44 | 0.000006 |
S | 64 | W64del1 | tGG | t-N | 1 | 2 | AY.44 | 0.000006 |
S | 64 | W64R | Tgg | Agg | 1 | 2 | AY.45 | 0.000122 |
S | 64 | W64R | Tgg | Cgg | 1 | 2 | AY.45 | 0.000122 |
S | 64 | W64del | TGG | --- | 2 | 2 | AY.52 | 0.001629 |
S | 64 | W64del | TGG | --- | 2 | 2 | AY.54 | 0.000191 |
S | 64 | W64del | TGG | --- | 2 | 2 | AY.6 | 0.000082 |
S | 64 | W64X | tGg | tAg | 2 | 2 | AY.6 | 0.000082 |
S | 64 | W64del | TGG | --- | 2 | 2 | AY.64 | 0.00119 |
S | 64 | W64del | TGG | --- | 2 | 2 | AY.7.2 | 0.001119 |
S | 64 | W64del | TGG | --- | 2 | 2 | AY.71 | 0.00095 |
S | 64 | W64del | TGG | --- | 2 | 2 | AY.94 | 0.000885 |
S | 64 | W64S | tGg | tCg | 2 | 2 | AZ.2 | 0.001642 |
S | 64 | W64R | Tgg | Cgg | 2 | 2 | B.1.1 | 0.000036 |
S | 64 | W64L | tGg | tTg | 1 | 2 | B.1.1 | 0.000018 |
S | 64 | W64L | TGg | CTg | 1 | 2 | B.1.1 | 0.000018 |
S | 64 | W64R | Tgg | Cgg | 2 | 2 | B.1.1.133 | 0.016949 |
S | 64 | W64A | TGG | GCC | 1 | 2 | B.1.1.33 | 0.000421 |
S | 64 | W64G | TgG | GgC | 1 | 2 | B.1.1.33 | 0.000421 |
S | 64 | W64G | Tgg | Ggg | 1 | 2 | B.1.1.33 | 0.000421 |
S | 64 | W64A | TGg | GCg | 1 | 2 | B.1.1.33 | 0.000421 |
S | 64 | W64R | Tgg | Cgg | 2 | 2 | B.1.1.519 | 0.000079 |
S | 64 | W64del2 | tGG | t-- | 2 | 2 | B.1.1.7 | 0.000002 |
S | 64 | W64C | tgG | tgT | 2 | 2 | B.1.160 | 0.000062 |
S | 64 | W64C | tgG | tgT | 2 | 2 | B.1.177 | 0.000026 |
S | 64 | W64del | TGG | --- | 2 | 2 | B.1.177.81 | 0.000379 |
S | 64 | W64L | tGg | tTg | 2 | 2 | B.1.221 | 0.000142 |
S | 64 | W64R | Tgg | Agg | 2 | 2 | B.1.243 | 0.000139 |
S | 64 | W64del | TGG | --- | 2 | 2 | B.1.258 | 0.000133 |
S | 64 | W64R | Tgg | Cgg | 2 | 2 | B.1.258 | 0.000133 |
S | 64 | W64C | tgG | tgT | 2 | 2 | B.1.311 | 0.000549 |
S | 64 | W64R | Tgg | Agg | 2 | 2 | B.1.329 | 0.001215 |
S | 64 | W64del | TGG | --- | 2 | 2 | B.1.351 | 0.000059 |
S | 64 | W64C | tgG | tgT | 2 | 2 | B.1.351 | 0.000059 |
S | 64 | W64L | tGg | tTg | 2 | 2 | B.1.351 | 0.000059 |
S | 64 | W64X | tgG | tgA | 2 | 2 | B.1.427 | 0.000101 |
S | 64 | W64L | tGg | tTg | 2 | 2 | B.1.427 | 0.000101 |
S | 64 | W64R | Tgg | Agg | 2 | 2 | B.1.427 | 0.000101 |
S | 64 | W64R | Tgg | Agg | 2 | 2 | B.1.555 | 0.044444 |
S | 64 | W64C | tgG | tgT | 2 | 2 | B.1.582 | 0.000981 |
S | 64 | W64X | tGg | tAg | 1 | 2 | B.1.617.2 | 0.000004 |
S | 64 | W64X | tgG | tgA | 1 | 2 | B.1.617.2 | 0.000004 |
S | 64 | W64R | Tgg | Agg | 1 | 2 | B.1.621 | 0.000089 |
S | 64 | W64R | Tgg | Cgg | 1 | 2 | B.1.621 | 0.000089 |
S | 64 | W64K | TGg | AAg | 2 | 2 | C.36.3 | 0.001134 |
S | 64 | W64R | Tgg | Agg | 2 | 2 | C.36.3 | 0.001134 |
S | 64 | W64R | Tgg | Agg | 2 | 2 | C.36.3.1 | 0.005435 |
S | 64 | W64R | Tgg | Agg | 2 | 2 | D.2 | 0.00015 |
S | 64 | W64R | Tgg | Agg | 2 | 2 | P.2 | 0.000373 |
S | 64 | W64del | TGG | --- | 2 | 2 | R.1 | 0.00018 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | A | 0.000387 |
S | 64 | W64L | tGg | tTg | 1 | 1 | A.27 | 0.001656 |
S | 64 | W64Q | TGg | CAg | 1 | 1 | All | 0 |
S | 64 | W64P | TGg | CCg | 1 | 1 | All | 0 |
S | 64 | W64T | TGg | ACg | 1 | 1 | All | 0 |
S | 64 | W64del | TGG | --- | 1 | 1 | AU.1 | 0.001266 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | AY.1 | 0.000396 |
S | 64 | W64L | tGg | tTg | 1 | 1 | AY.100 | 0.000046 |
S | 64 | W64G | Tgg | Ggg | 1 | 1 | AY.102 | 0.000027 |
S | 64 | W64C | tgG | tgT | 1 | 1 | AY.102 | 0.000027 |
S | 64 | W64del | TGG | --- | 1 | 1 | AY.105 | 0.000643 |
S | 64 | W64F | tGG | tTT | 1 | 1 | AY.107 | 0.000466 |
S | 64 | W64C | tgG | tgT | 1 | 1 | AY.111 | 0.000183 |
S | 64 | W64X | tGg | tAg | 1 | 1 | AY.111 | 0.000183 |
S | 64 | W64S | tGg | tCg | 1 | 1 | AY.113 | 0.000142 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | AY.113 | 0.000142 |
S | 64 | W64T | TGg | ACg | 1 | 1 | AY.113 | 0.000142 |
S | 64 | W64C | tgG | tgT | 1 | 1 | AY.115 | 0.005208 |
S | 64 | W64C | tgG | tgT | 1 | 1 | AY.117 | 0.000085 |
S | 64 | W64Q | TGg | CAg | 1 | 1 | AY.119 | 0.000035 |
S | 64 | W64L | tGg | tTg | 1 | 1 | AY.119 | 0.000035 |
S | 64 | W64L | tGg | tTg | 1 | 1 | AY.120 | 0.000037 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | AY.120 | 0.000037 |
S | 64 | W64L | tGg | tTg | 1 | 1 | AY.13 | 0.000161 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | AY.13 | 0.000161 |
S | 64 | W64L | tGg | tTg | 1 | 1 | AY.14 | 0.000088 |
S | 64 | W64del | TGG | --- | 1 | 1 | AY.14 | 0.000088 |
S | 64 | W64X | tGg | tAg | 1 | 1 | AY.14 | 0.000088 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | AY.16.1 | 0.00047 |
S | 64 | W64C | tgG | tgT | 1 | 1 | AY.20 | 0.000039 |
S | 64 | W64X | tGg | tAg | 1 | 1 | AY.20 | 0.000039 |
S | 64 | W64R | Tgg | Cgg | 1 | 1 | AY.23 | 0.00007 |
S | 64 | W64C | tgG | tgT | 1 | 1 | AY.23 | 0.00007 |
S | 64 | W64del | TGG | --- | 1 | 1 | AY.24 | 0.000431 |
S | 64 | W64del1 | TGG | -NN | 1 | 1 | AY.25 | 0.000006 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | AY.29 | 0.000016 |
S | 64 | W64del | TGG | --- | 1 | 1 | AY.29 | 0.000016 |
S | 64 | W64G | Tgg | Ggg | 1 | 1 | AY.3 | 0.00001 |
S | 64 | W64E | TGg | GAg | 1 | 1 | AY.3 | 0.00001 |
S | 64 | W64L | tGg | tTg | 1 | 1 | AY.3.1 | 0.000085 |
S | 64 | W64del | TGG | --- | 1 | 1 | AY.30 | 0.000396 |
S | 64 | W64C | tgG | tgT | 1 | 1 | AY.32 | 0.000532 |
S | 64 | W64del | TGG | --- | 1 | 1 | AY.34 | 0.000097 |
S | 64 | W64del2 | tGG | t-- | 1 | 1 | AY.34.1 | 0.00051 |
S | 64 | W64del1 | TGG | -NN | 1 | 1 | AY.34.1 | 0.00051 |
S | 64 | W64L | tGg | tTg | 1 | 1 | AY.38 | 0.000499 |
S | 64 | W64S | tGg | tCg | 1 | 1 | AY.39 | 0.000025 |
S | 64 | W64C | tgG | tgT | 1 | 1 | AY.39.1 | 0.00004 |
S | 64 | W64del | TGG | --- | 1 | 1 | AY.39.2 | 0.001541 |
S | 64 | W64L | tGg | tTg | 1 | 1 | AY.39.2 | 0.001541 |
S | 64 | W64del2 | TGG | --N | 1 | 1 | AY.4 | 0.000002 |
S | 64 | W64X | tgG | tgA | 1 | 1 | AY.4.2 | 0.000022 |
S | 64 | W64del | TGG | --- | 1 | 1 | AY.4.2 | 0.000022 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | AY.4.2 | 0.000022 |
S | 64 | W64del | TGG | --- | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 64 | W64C | tgG | tgT | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 64 | W64del | TGG | --- | 1 | 1 | AY.4.4 | 0.000409 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | AY.4.5 | 0.000107 |
S | 64 | W64del2 | TGg | --g | 1 | 1 | AY.4.5 | 0.000107 |
S | 64 | W64K | TGg | AAg | 1 | 1 | AY.41 | 0.000294 |
S | 64 | W64R | Tgg | Cgg | 1 | 1 | AY.42 | 0.00004 |
S | 64 | W64del2 | tGG | t-- | 1 | 1 | AY.43 | 0.000004 |
S | 64 | W64K | TGg | AAg | 1 | 1 | AY.43 | 0.000004 |
S | 64 | W64G | TgG | GgT | 1 | 1 | AY.44 | 0.000006 |
S | 64 | W64del | TGG | --- | 1 | 1 | AY.46.5 | 0.000198 |
S | 64 | W64del | TGG | --- | 1 | 1 | AY.46.6 | 0.000072 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | AY.47 | 0.000031 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | AY.5 | 0.000021 |
S | 64 | W64L | tGg | tTg | 1 | 1 | AY.5 | 0.000021 |
S | 64 | W64G | Tgg | Ggg | 1 | 1 | AY.5 | 0.000021 |
S | 64 | W64C | tgG | tgT | 1 | 1 | AY.5 | 0.000021 |
S | 64 | W64del2 | tGG | t-- | 1 | 1 | AY.5 | 0.000021 |
S | 64 | W64del | TGG | --- | 1 | 1 | AY.5.3 | 0.000337 |
S | 64 | W64del | TGG | --- | 1 | 1 | AY.5.4 | 0.000277 |
S | 64 | W64X | tGg | tAg | 1 | 1 | AY.53 | 0.000288 |
S | 64 | W64C | tgG | tgT | 1 | 1 | AY.53 | 0.000288 |
S | 64 | W64X | tgG | tgA | 1 | 1 | AY.59 | 0.00053 |
S | 64 | W64del | TGG | --- | 1 | 1 | AY.59 | 0.00053 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | AY.60 | 0.000938 |
S | 64 | W64del | TGG | --- | 1 | 1 | AY.60 | 0.000938 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | AY.65 | 0.000533 |
S | 64 | W64C | tgG | tgT | 1 | 1 | AY.67 | 0.000464 |
S | 64 | W64del | TGG | --- | 1 | 1 | AY.67 | 0.000464 |
S | 64 | W64del | TGG | --- | 1 | 1 | AY.68 | 0.000274 |
S | 64 | W64R | Tgg | Cgg | 1 | 1 | AY.7.1 | 0.000113 |
S | 64 | W64del | TGG | --- | 1 | 1 | AY.70 | 0.000209 |
S | 64 | W64C | tgG | tgT | 1 | 1 | AY.71 | 0.000475 |
S | 64 | W64del | TGG | --- | 1 | 1 | AY.72 | 0.001361 |
S | 64 | W64L | tGg | tTg | 1 | 1 | AY.73 | 0.000665 |
S | 64 | W64del | TGG | --- | 1 | 1 | AY.73 | 0.000665 |
S | 64 | W64del | TGG | --- | 1 | 1 | AY.74 | 0.000116 |
S | 64 | W64C | tgG | tgT | 1 | 1 | AY.75 | 0.000056 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | AY.75 | 0.000056 |
S | 64 | W64C | tgG | tgT | 1 | 1 | AY.76 | 0.004831 |
S | 64 | W64C | tgG | tgT | 1 | 1 | AY.83 | 0.001724 |
S | 64 | W64del | TGG | --- | 1 | 1 | AY.84 | 0.000437 |
S | 64 | W64C | tgG | tgT | 1 | 1 | AY.85 | 0.000427 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | AY.85 | 0.000427 |
S | 64 | W64L | tGg | tTg | 1 | 1 | AY.85 | 0.000427 |
S | 64 | W64G | Tgg | Ggg | 1 | 1 | AY.85 | 0.000427 |
S | 64 | W64K | TGg | AAg | 1 | 1 | AY.85 | 0.000427 |
S | 64 | W64del1 | tGG | tA- | 1 | 1 | AY.9 | 0.000068 |
S | 64 | W64L | tGg | tTg | 1 | 1 | AY.9 | 0.000068 |
S | 64 | W64C | tgG | tgT | 1 | 1 | AY.9.2 | 0.000037 |
S | 64 | W64C | tgG | tgT | 1 | 1 | AY.91 | 0.00073 |
S | 64 | W64del | TGG | --- | 1 | 1 | AY.92 | 0.000287 |
S | 64 | W64del | TGG | --- | 1 | 1 | AY.97 | 0.001701 |
S | 64 | W64del | TGG | --- | 1 | 1 | AY.99 | 0.001049 |
S | 64 | W64del1 | tGg | t-g | 1 | 1 | AY.99.2 | 0.000092 |
S | 64 | W64del1 | tGg | t-g | 1 | 1 | B.1 | 0.000009 |
S | 64 | W64G | Tgg | Ggg | 1 | 1 | B.1 | 0.000009 |
S | 64 | W64P | TGg | CCg | 1 | 1 | B.1.1 | 0.000018 |
S | 64 | W64S | tGg | tCg | 1 | 1 | B.1.1 | 0.000018 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.1.118 | 0.010204 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.1.148 | 0.008772 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | B.1.1.153 | 0.001095 |
S | 64 | W64L | tGg | tTg | 1 | 1 | B.1.1.186 | 0.003436 |
S | 64 | W64L | tGg | tTg | 1 | 1 | B.1.1.216 | 0.00089 |
S | 64 | W64C | tgG | tgT | 1 | 1 | B.1.1.216 | 0.00089 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.1.216 | 0.00089 |
S | 64 | W64L | tGg | tTg | 1 | 1 | B.1.1.222 | 0.000204 |
S | 64 | W64R | Tgg | Cgg | 1 | 1 | B.1.1.222 | 0.000204 |
S | 64 | W64L | tGg | tTg | 1 | 1 | B.1.1.25 | 0.000569 |
S | 64 | W64C | tgG | tgT | 1 | 1 | B.1.1.258 | 0.003257 |
S | 64 | W64C | tgG | tgT | 1 | 1 | B.1.1.277 | 0.000759 |
S | 64 | W64G | Tgg | Ggg | 1 | 1 | B.1.1.28 | 0.000311 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | B.1.1.28 | 0.000311 |
S | 64 | W64K | TGg | AAg | 1 | 1 | B.1.1.28 | 0.000311 |
S | 64 | W64E | TGg | GAg | 1 | 1 | B.1.1.28 | 0.000311 |
S | 64 | W64K | TGg | AAg | 1 | 1 | B.1.1.284 | 0.000107 |
S | 64 | W64R | Tgg | Cgg | 1 | 1 | B.1.1.306 | 0.000438 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.1.306 | 0.000438 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.1.311 | 0.000358 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.1.312 | 0.001912 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.1.315 | 0.008475 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.1.318 | 0.000302 |
S | 64 | W64C | tgG | tgT | 1 | 1 | B.1.1.318 | 0.000302 |
S | 64 | W64R | Tgg | Cgg | 1 | 1 | B.1.1.318 | 0.000302 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | B.1.1.33 | 0.000421 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.1.361 | 0.045455 |
S | 64 | W64L | tGg | tTg | 1 | 1 | B.1.1.374 | 0.002375 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.1.434 | 0.000349 |
S | 64 | W64R | Tgg | Cgg | 1 | 1 | B.1.1.448 | 0.002033 |
S | 64 | W64L | tGg | tTg | 1 | 1 | B.1.1.464 | 0.001473 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.1.523 | 0.001563 |
S | 64 | W64del2 | tGG | t-- | 1 | 1 | B.1.1.523 | 0.001563 |
S | 64 | W64K | TGg | AAg | 1 | 1 | B.1.1.7 | 0.000001 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.1.70 | 0.000341 |
S | 64 | W64C | tgG | tgT | 1 | 1 | B.1.146 | 0.004237 |
S | 64 | W64G | Tgg | Ggg | 1 | 1 | B.1.160 | 0.000031 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | B.1.160.15 | 0.00495 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.160.32 | 0.004292 |
S | 64 | W64G | Tgg | Ggg | 1 | 1 | B.1.177 | 0.000013 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.177.15 | 0.000631 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.177.16 | 0.000664 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.177.17 | 0.000821 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.177.18 | 0.00116 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.177.21 | 0.000076 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | B.1.177.33 | 0.001645 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.177.4 | 0.000211 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.177.51 | 0.004566 |
S | 64 | W64C | tgG | tgT | 1 | 1 | B.1.177.54 | 0.000606 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.177.56 | 0.000668 |
S | 64 | W64X | tgG | tgA | 1 | 1 | B.1.177.58 | 0.001332 |
S | 64 | W64C | tgG | tgT | 1 | 1 | B.1.177.60 | 0.000218 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | B.1.177.73 | 0.000566 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.177.77 | 0.000726 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.177.83 | 0.001481 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.179 | 0.003759 |
S | 64 | W64L | tGg | tTg | 1 | 1 | B.1.179 | 0.003759 |
S | 64 | W64L | tGg | tTg | 1 | 1 | B.1.199 | 0.004132 |
S | 64 | W64G | Tgg | Ggg | 1 | 1 | B.1.221 | 0.000071 |
S | 64 | W64R | Tgg | Cgg | 1 | 1 | B.1.221 | 0.000071 |
S | 64 | W64L | tGg | tTg | 1 | 1 | B.1.234 | 0.000132 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.239 | 0.001221 |
S | 64 | W64R | Tgg | Cgg | 1 | 1 | B.1.241 | 0.000812 |
S | 64 | W64del1 | tgG | tg- | 1 | 1 | B.1.258.24 | 0.010753 |
S | 64 | W64L | tGg | tTg | 1 | 1 | B.1.265 | 0.001271 |
S | 64 | W64C | tgG | tgC | 1 | 1 | B.1.332 | 0.003497 |
S | 64 | W64G | Tgg | Ggg | 1 | 1 | B.1.346 | 0.001311 |
S | 64 | W64L | tGg | tTg | 1 | 1 | B.1.349 | 0.000715 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | B.1.351 | 0.00003 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | B.1.356 | 0.001727 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | B.1.36 | 0.000146 |
S | 64 | W64C | tgG | tgT | 1 | 1 | B.1.36 | 0.000146 |
S | 64 | W64L | tGg | tTg | 1 | 1 | B.1.36.16 | 0.001425 |
S | 64 | W64L | tGg | tTg | 1 | 1 | B.1.36.29 | 0.000517 |
S | 64 | W64R | Tgg | Cgg | 1 | 1 | B.1.369 | 0.000285 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.391 | 0.001127 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.427 | 0.00005 |
S | 64 | W64C | tgG | tgC | 1 | 1 | B.1.429 | 0.000024 |
S | 64 | W64G | Tgg | Ggg | 1 | 1 | B.1.429 | 0.000024 |
S | 64 | W64R | Tgg | Cgg | 1 | 1 | B.1.429 | 0.000024 |
S | 64 | W64R | Tgg | Cgg | 1 | 1 | B.1.431 | 0.04 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | B.1.466.2 | 0.000391 |
S | 64 | W64C | tgG | tgC | 1 | 1 | B.1.470 | 0.001404 |
S | 64 | W64L | tGg | tTg | 1 | 1 | B.1.509 | 0.000866 |
S | 64 | W64M | TGg | ATg | 1 | 1 | B.1.525 | 0.000113 |
S | 64 | W64L | tGg | tTg | 1 | 1 | B.1.525 | 0.000113 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | B.1.525 | 0.000113 |
S | 64 | W64C | tgG | tgT | 1 | 1 | B.1.526 | 0.000024 |
S | 64 | W64L | tGg | tTg | 1 | 1 | B.1.538 | 0.008065 |
S | 64 | W64C | tgG | tgT | 1 | 1 | B.1.575 | 0.000303 |
S | 64 | W64R | Tgg | Cgg | 1 | 1 | B.1.582 | 0.000491 |
S | 64 | W64L | tGg | tTg | 1 | 1 | B.1.595 | 0.000261 |
S | 64 | W64C | tgG | tgT | 1 | 1 | B.1.595 | 0.000261 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.596 | 0.000087 |
S | 64 | W64L | tGg | tTg | 1 | 1 | B.1.609 | 0.000479 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | B.1.617.1 | 0.000129 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.617.1 | 0.000129 |
S | 64 | W64G | Tgg | Ggg | 1 | 1 | B.1.617.2 | 0.000004 |
S | 64 | W64F | tGG | tTT | 1 | 1 | B.1.617.2 | 0.000004 |
S | 64 | W64K | TGg | AAg | 1 | 1 | B.1.617.2 | 0.000004 |
S | 64 | W64C | tgG | tgT | 1 | 1 | B.1.619.1 | 0.000641 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.621 | 0.000089 |
S | 64 | W64C | tgG | tgT | 1 | 1 | B.1.623 | 0.000536 |
S | 64 | W64del | TGG | --- | 1 | 1 | B.1.637 | 0.000073 |
S | 64 | W64C | tgG | tgT | 1 | 1 | B.1.637 | 0.000073 |
S | 64 | W64L | tGg | tTg | 1 | 1 | B.40 | 0.000364 |
S | 64 | W64L | tGg | tTg | 1 | 1 | B.52 | 0.010101 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | B.55 | 0.00295 |
S | 64 | W64L | tGg | tTg | 1 | 1 | C.16 | 0.00106 |
S | 64 | W64G | Tgg | Ggg | 1 | 1 | C.19 | 0.027027 |
S | 64 | W64del | TGG | --- | 1 | 1 | C.35 | 0.000774 |
S | 64 | W64del | TGG | --- | 1 | 1 | C.36 | 0.000911 |
S | 64 | W64del | TGG | --- | 1 | 1 | C.36.3 | 0.000567 |
S | 64 | W64K | TGg | AAg | 1 | 1 | C.37 | 0.000116 |
S | 64 | W64M | TGg | ATg | 1 | 1 | C.37 | 0.000116 |
S | 64 | W64C | tgG | tgT | 1 | 1 | C.37 | 0.000116 |
S | 64 | W64K | TGg | AAg | 1 | 1 | C.38 | 0.008065 |
S | 64 | W64X | tgG | tgA | 1 | 1 | D.2 | 0.000075 |
S | 64 | W64K | TGg | AAg | 1 | 1 | P.1 | 0.000016 |
S | 64 | W64del | TGG | --- | 1 | 1 | P.1.10.1 | 0.00813 |
S | 64 | W64del | TGG | --- | 1 | 1 | P.1.12 | 0.000484 |
S | 64 | W64L | tGg | tTg | 1 | 1 | P.1.7 | 0.000319 |
S | 64 | W64E | TGg | GAg | 1 | 1 | P.2 | 0.000187 |
S | 64 | W64G | Tgg | Ggg | 1 | 1 | P.2 | 0.000187 |
S | 64 | W64L | tGg | tTg | 1 | 1 | P.2 | 0.000187 |
S | 64 | W64K | TGg | AAg | 1 | 1 | P.2 | 0.000187 |
S | 64 | W64E | TGg | GAg | 1 | 1 | P.7 | 0.004367 |
S | 64 | W64G | Tgg | Ggg | 1 | 1 | P.7 | 0.004367 |
S | 64 | W64X | tGg | tAg | 1 | 1 | P.7 | 0.004367 |
S | 64 | W64del | TGG | --- | 1 | 1 | Q.1 | 0.000126 |
S | 64 | W64X | tgG | tgA | 1 | 1 | Q.1 | 0.000126 |
S | 64 | W64del | TGG | --- | 1 | 1 | Q.2 | 0.000613 |
S | 64 | W64C | tgG | tgT | 1 | 1 | Q.8 | 0.000165 |
S | 64 | W64X | tGg | tAg | 1 | 1 | R.1 | 0.00009 |
S | 64 | W64del | TGG | --- | 1 | 1 | U.3 | 0.003861 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|