CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 64

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S64W64RnonsynTggAgg12389030.72940221752-21754
S64W64RnonsynTggCgg12383340.2697921752-21754
S64W64RnonsynTgGAgA123810.00080775421752-21754
S64W64deldelTGG---11181118121752-21754
S64W64CnonsyntgGtgT6746640.98516321752-21754
S64W64CnonsyntgGtgC674100.014836821752-21754
S64W64LnonsyntGgtTg4024010.99751221752-21754
S64W64LnonsynTGgCTg40210.0024875621752-21754
S64W64XnonsyntGgtAg1141020.89473721752-21754
S64W64XnonsyntgGtgA114120.10526321752-21754
S64W64GnonsynTggGgg39370.94871821752-21754
S64W64GnonsynTgGGgC3910.02564121752-21754
S64W64GnonsynTgGGgT3910.02564121752-21754
S64W64SnonsyntGgtCg34270.79411821752-21754
S64W64SnonsynTgGAgC3460.17647121752-21754
S64W64SnonsyntGGtCC3410.029411821752-21754
S64W64del1deltGGtA-27100.3703721752-21754
S64W64del1deltGgt-g2750.18518521752-21754
S64W64del1deltGGt-N2740.14814821752-21754
S64W64del1deltgGtg-2730.11111121752-21754
S64W64del1deltGGt-A2730.11111121752-21754
S64W64del1delTGG-NN2720.074074121752-21754
S64W64del2deltGGt--16140.87521752-21754
S64W64del2delTGg--g1610.062521752-21754
S64W64del2delTGG--N1610.062521752-21754
S64W64FnonsyntGGtTT1313121752-21754
S64W64KnonsynTGgAAg1313121752-21754
S64W64EnonsynTGgGAg99121752-21754
S64W64MnonsynTGgATg88121752-21754
S64W64AnonsynTGGGCC210.521752-21754
S64W64AnonsynTGgGCg210.521752-21754
S64W64PnonsynTGgCCg11121752-21754
S64W64TnonsynTGgACg11121752-21754
S64W64QnonsynTGgCAg11121752-21754

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S64W64RTggAgg9031238All0.000173
S64W64RTggCgg3341238All0.000064
S64W64RTgGAgA11238All0
S64W64delTGG---11181118All0.000214
S64W64CtgGtgT664674All0.000127
S64W64CtgGtgC10674All0.000002
S64W64LtGgtTg401402All0.000077
S64W64LTGgCTg1402All0
S64W64RTggAgg399399B.1.6270.806061
S64W64RTggCgg211352B.1.1.70.000189
S64W64RTggAgg141352B.1.1.70.000126
S64W64delTGG---282282C.370.03273
S64W64CtgGtgT176176B.1.177.210.013459
S64W64XtGgtAg102114All0.00002
S64W64XtgGtgA12114All0.000002
S64W64delTGG---109109AY.430.000483
S64W64RTggAgg109109C.380.879032
S64W64delTGG---7979B.1.617.20.000297
S64W64LtGgtTg7878B.1.1.70.00007
S64W64CtgGtgT7474AY.46.30.069094
S64W64delTGG---6767B.1.1.70.00006
S64W64delTGG---6666AY.40.000103
S64W64CtgGtgT6565U.20.570175
S64W64XtGgtAg6060B.1.1.70.000054
S64W64RTggAgg5656P.30.089314
S64W64CtgGtgT5050AY.430.000222
S64W64CtgGtgT4747B.1.1.70.000042
S64W64delTGG---4343AY.440.000262
S64W64CtgGtgT4242AY.1030.000261
S64W64delTGG---4242AY.250.000253
S64W64GTggGgg3739All0.000007
S64W64GTgGGgT139All0
S64W64GTgGGgC139All0
S64W64CtgGtgT3738AY.40.000058
S64W64CtgGtgC138AY.40.000002
S64W64LtGgtTg3838B.1.617.20.000143
S64W64StGgtCg2734All0.000005
S64W64STgGAgC634All0.000001
S64W64StGGtCC134All0
S64W64RTggAgg3131B.1.5960.002701
S64W64delTGG---3030AY.90.002028
S64W64RTggCgg2530B.1.20.00022
S64W64RTggAgg530B.1.20.000044
S64W64LtGgtTg2929AY.430.000128
S64W64del1tGGtA-1027All0.000002
S64W64del1tGgt-g527All0.000001
S64W64del1tGGt-N427All0.000001
S64W64del1tGGt-A327All0.000001
S64W64del1tgGtg-327All0.000001
S64W64del1TGG-NN227All0
S64W64RTggAgg2327B.1.617.20.000087
S64W64RTggCgg427B.1.617.20.000015
S64W64LtGgtTg2626AY.40.00004
S64W64RTggCgg1224B.10.00011
S64W64RTggAgg1224B.10.00011
S64W64LtGgtTg2323AY.390.000568
S64W64CtgGtgT2323AY.690.004293
S64W64delTGG---2020AY.1030.000124
S64W64delTGG---2020AY.30.000199
S64W64delTGG---1717AY.1020.000451
S64W64CtgGtgT1717AY.30.000169
S64W64del2tGGt--1416All0.000003
S64W64del2TGG--N116All0
S64W64del2TGg--g116All0
S64W64LtGgtTg1616B.1.240.20.484848
S64W64XtGgtAg1515AZ.20.012315
S64W64LtGgtTg1515B.10.000137
S64W64delTGG---1515B.1.10.000272
S64W64StGgtCg1414B.1.1.70.000013
S64W64del1tGGtA-714B.1.1.70.000006
S64W64del1tGGt-N314B.1.1.70.000003
S64W64del1tGgt-g214B.1.1.70.000002
S64W64del1tGGt-A114B.1.1.70.000001
S64W64del1tgGtg-114B.1.1.70.000001
S64W64RTggCgg1214B.1.6380.631579
S64W64RTggAgg214B.1.6380.105263
S64W64FtGGtTT1313All0.000002
S64W64KTGgAAg1313All0.000002
S64W64RTggAgg1313AY.330.000868
S64W64delTGG---1313B.1.1770.000171
S64W64LtGgtTg1212AY.1030.000075
S64W64delTGG---1212AY.50.000248
S64W64CtgGtgT1212B.1.617.20.000045
S64W64CtgGtgT1011AY.250.00006
S64W64CtgGtgC111AY.250.000006
S64W64delTGG---1111AY.260.000311
S64W64RTggCgg1111AY.260.000311
S64W64delTGG---1111AY.34.10.005609
S64W64FtGGtTT1111AY.50.000227
S64W64CtgGtgT1111B.1.1.2140.00061
S64W64XtGgtAg810AY.40.000012
S64W64XtgGtgA210AY.40.000003
S64W64LtGgtTg1010AY.440.000061
S64W64RTggAgg1010B0.001278
S64W64LtGgtTg1010B.1.20.000088
S64W64ETGgGAg99All0.000002
S64W64delTGG---99AY.4.50.000967
S64W64RTggCgg59AY.430.000022
S64W64RTggAgg49AY.430.000018
S64W64delTGG---99B.1.4290.000212
S64W64MTGgATg88All0.000002
S64W64delTGG---88AY.1010.003923
S64W64LtGgtTg88AY.260.000226
S64W64delTGG---88AY.470.000249
S64W64delTGG---88AY.980.000632
S64W64delTGG---88B.1.177.860.001468
S64W64CtgGtgT88B.1.5170.003416
S64W64LtGgtTg77AY.1020.000186
S64W64RTggCgg47AY.30.00004
S64W64RTggAgg37AY.30.00003
S64W64delTGG---77AY.420.000282
S64W64delTGG---77AY.460.000729
S64W64delTGG---77B.10.000064
S64W64LtGgtTg77B.1.1770.000092
S64W64LtGgtTg77B.1.177.570.001967
S64W64CtgGtgT77B.1.20.000062
S64W64LtGgtTg77B.1.2580.000466
S64W64RTggAgg77Q.10.000884
S64W64delTGG---66AY.1000.000276
S64W64RTggCgg56AY.1030.000031
S64W64RTggAgg16AY.1030.000006
S64W64LtGgtTg66AY.1180.000376
S64W64delTGG---66AY.1210.000812
S64W64CtgGtgT66AY.260.00017
S64W64RTggAgg36AY.440.000018
S64W64RTggCgg36AY.440.000018
S64W64delTGG---66AY.450.00073
S64W64CtgGtgT66B.1.1.560.107143
S64W64MTGgATg66B.1.1.70.000005
S64W64GTggGgg66P.10.000095
S64W64delTGG---66P.10.000095
S64W64RTggAgg55AY.140.00044
S64W64LtGgtTg55AY.250.00003
S64W64STgGAgC55AY.300.001979
S64W64delTGG---55AY.330.000334
S64W64StGgtCg55AY.40.000008
S64W64RTggAgg35AY.40.000005
S64W64RTggCgg25AY.40.000003
S64W64CtgGtgT55AY.440.00003
S64W64delTGG---55AY.9.20.000184
S64W64CtgGtgT55B.10.000046
S64W64GTggGgg55B.1.1.70.000004
S64W64delTGG---55B.1.20.000044
S64W64ETGgGAg55P.10.000079
S64W64LtGgtTg55P.1.150.001162
S64W64LtGgtTg440.222222
S64W64delTGG---440.222222
S64W64RTggCgg44AB.10.032787
S64W64RTggCgg34AY.1020.00008
S64W64RTggAgg14AY.1020.000027
S64W64CtgGtgT44AY.1160.001147
S64W64delTGG---44AY.1190.000141
S64W64delTGG---44AY.200.000155
S64W64RTggAgg44AY.300.001583
S64W64delTGG---44AY.390.000099
S64W64del2tGGt--44AY.440.000024
S64W64XtGgtAg34AY.50.000062
S64W64XtgGtgA14AY.50.000021
S64W64delTGG---44AY.610.000419
S64W64RTggCgg24AY.690.000373
S64W64RTggAgg14AY.690.000187
S64W64RTgGAgA14AY.690.000187
S64W64delTGG---44AY.850.001709
S64W64del2tGGt--44AY.90.00027
S64W64LtGgtTg44AY.9.10.000335
S64W64delTGG---44AY.98.10.000194
S64W64delTGG---44AY.99.20.000369
S64W64delTGG---44B.1.1080.023256
S64W64delTGG---44B.1.1600.000125
S64W64LtGgtTg44B.1.1600.000125
S64W64RTggAgg44B.1.1770.000053
S64W64delTGG---44B.1.2210.000284
S64W64LtGgtTg44B.1.4290.000094
S64W64LtGgtTg44B.1.5750.001214
S64W64RTggAgg44P.10.000063
S64W64XtGgtAg44P.10.000063
S64W64RTggAgg33AY.1060.001005
S64W64delTGG---33AY.1130.000427
S64W64delTGG---33AY.1180.000188
S64W64delTGG---33AY.120.000948
S64W64delTGG---33AY.1200.000112
S64W64CtgGtgC33AY.300.001187
S64W64delTGG---33AY.380.001498
S64W64RTggAgg23AY.390.000049
S64W64RTggCgg13AY.390.000025
S64W64delTGG---33AY.39.10.000119
S64W64RTggAgg33AY.610.000314
S64W64delTGG---33AY.750.000168
S64W64delTGG---33AY.75.10.000541
S64W64RTggAgg33AY.75.10.000541
S64W64delTGG---33AY.9.10.000251
S64W64del1tGGt-A23AZ.20.001642
S64W64del1tGGtA-13AZ.20.000821
S64W64CtgGtgT33B.1.10.000054
S64W64GTggGgg33B.1.10.000054
S64W64GTggGgg33B.1.1.10.00098
S64W64CtgGtgT33B.1.1.2940.003797
S64W64CtgGtgC23B.1.1.330.000842
S64W64STgGAgC13B.1.1.330.000421
S64W64CtgGtgT13B.1.1.330.000421
S64W64StGgtCg13B.1.1.330.000421
S64W64StGGtCC13B.1.1.330.000421
S64W64LtGgtTg33B.1.1.700.001023
S64W64CtgGtgT33B.1.2340.000396
S64W64LtGgtTg33B.1.360.000438
S64W64LtGgtTg33B.1.438.10.000322
S64W64LtGgtTg33B.1.4990.003151
S64W64delTGG---33B.1.5250.000339
S64W64LtGgtTg33B.1.5260.000071
S64W64RTggAgg23B.1.5260.000047
S64W64RTggCgg13B.1.5260.000024
S64W64LtGgtTg33B.1.5820.001472
S64W64LtGgtTg33B.30.002492
S64W64RTggAgg23C.370.000232
S64W64RTggCgg13C.370.000116
S64W64ATGGGCC12All0
S64W64ATGgGCg12All0
S64W64delTGG---22AY.1080.002205
S64W64delTGG---22AY.1110.000366
S64W64delTGG---22AY.1170.000169
S64W64RTggCgg22AY.1180.000125
S64W64RTggAgg12AY.1190.000035
S64W64RTggCgg12AY.1190.000035
S64W64XtGgtAg12AY.1200.000037
S64W64XtgGtgA12AY.1200.000037
S64W64LtGgtTg22AY.200.000078
S64W64LtGgtTg22AY.230.000139
S64W64RTggCgg22AY.250.000012
S64W64LtGgtTg22AY.290.000032
S64W64CtgGtgT22AY.290.000032
S64W64StGgtCg22AY.30.00002
S64W64delTGG---22AY.3.10.000171
S64W64LtGgtTg22AY.330.000134
S64W64GTggGgg22AY.39.10.000079
S64W64GTggGgg22AY.40.000003
S64W64CtgGtgT22AY.4.20.000043
S64W64XtGgtAg22AY.430.000009
S64W64del1tGgt-g12AY.430.000004
S64W64del1tgGtg-12AY.430.000004
S64W64del1tGGtA-12AY.440.000006
S64W64del1tGGt-N12AY.440.000006
S64W64RTggAgg12AY.450.000122
S64W64RTggCgg12AY.450.000122
S64W64delTGG---22AY.520.001629
S64W64delTGG---22AY.540.000191
S64W64delTGG---22AY.60.000082
S64W64XtGgtAg22AY.60.000082
S64W64delTGG---22AY.640.00119
S64W64delTGG---22AY.7.20.001119
S64W64delTGG---22AY.710.00095
S64W64delTGG---22AY.940.000885
S64W64StGgtCg22AZ.20.001642
S64W64RTggCgg22B.1.10.000036
S64W64LtGgtTg12B.1.10.000018
S64W64LTGgCTg12B.1.10.000018
S64W64RTggCgg22B.1.1.1330.016949
S64W64ATGGGCC12B.1.1.330.000421
S64W64GTgGGgC12B.1.1.330.000421
S64W64GTggGgg12B.1.1.330.000421
S64W64ATGgGCg12B.1.1.330.000421
S64W64RTggCgg22B.1.1.5190.000079
S64W64del2tGGt--22B.1.1.70.000002
S64W64CtgGtgT22B.1.1600.000062
S64W64CtgGtgT22B.1.1770.000026
S64W64delTGG---22B.1.177.810.000379
S64W64LtGgtTg22B.1.2210.000142
S64W64RTggAgg22B.1.2430.000139
S64W64delTGG---22B.1.2580.000133
S64W64RTggCgg22B.1.2580.000133
S64W64CtgGtgT22B.1.3110.000549
S64W64RTggAgg22B.1.3290.001215
S64W64delTGG---22B.1.3510.000059
S64W64CtgGtgT22B.1.3510.000059
S64W64LtGgtTg22B.1.3510.000059
S64W64XtgGtgA22B.1.4270.000101
S64W64LtGgtTg22B.1.4270.000101
S64W64RTggAgg22B.1.4270.000101
S64W64RTggAgg22B.1.5550.044444
S64W64CtgGtgT22B.1.5820.000981
S64W64XtGgtAg12B.1.617.20.000004
S64W64XtgGtgA12B.1.617.20.000004
S64W64RTggAgg12B.1.6210.000089
S64W64RTggCgg12B.1.6210.000089
S64W64KTGgAAg22C.36.30.001134
S64W64RTggAgg22C.36.30.001134
S64W64RTggAgg22C.36.3.10.005435
S64W64RTggAgg22D.20.00015
S64W64RTggAgg22P.20.000373
S64W64delTGG---22R.10.00018
S64W64RTggAgg11A0.000387
S64W64LtGgtTg11A.270.001656
S64W64QTGgCAg11All0
S64W64PTGgCCg11All0
S64W64TTGgACg11All0
S64W64delTGG---11AU.10.001266
S64W64RTggAgg11AY.10.000396
S64W64LtGgtTg11AY.1000.000046
S64W64GTggGgg11AY.1020.000027
S64W64CtgGtgT11AY.1020.000027
S64W64delTGG---11AY.1050.000643
S64W64FtGGtTT11AY.1070.000466
S64W64CtgGtgT11AY.1110.000183
S64W64XtGgtAg11AY.1110.000183
S64W64StGgtCg11AY.1130.000142
S64W64RTggAgg11AY.1130.000142
S64W64TTGgACg11AY.1130.000142
S64W64CtgGtgT11AY.1150.005208
S64W64CtgGtgT11AY.1170.000085
S64W64QTGgCAg11AY.1190.000035
S64W64LtGgtTg11AY.1190.000035
S64W64LtGgtTg11AY.1200.000037
S64W64RTggAgg11AY.1200.000037
S64W64LtGgtTg11AY.130.000161
S64W64RTggAgg11AY.130.000161
S64W64LtGgtTg11AY.140.000088
S64W64delTGG---11AY.140.000088
S64W64XtGgtAg11AY.140.000088
S64W64RTggAgg11AY.16.10.00047
S64W64CtgGtgT11AY.200.000039
S64W64XtGgtAg11AY.200.000039
S64W64RTggCgg11AY.230.00007
S64W64CtgGtgT11AY.230.00007
S64W64delTGG---11AY.240.000431
S64W64del1TGG-NN11AY.250.000006
S64W64RTggAgg11AY.290.000016
S64W64delTGG---11AY.290.000016
S64W64GTggGgg11AY.30.00001
S64W64ETGgGAg11AY.30.00001
S64W64LtGgtTg11AY.3.10.000085
S64W64delTGG---11AY.300.000396
S64W64CtgGtgT11AY.320.000532
S64W64delTGG---11AY.340.000097
S64W64del2tGGt--11AY.34.10.00051
S64W64del1TGG-NN11AY.34.10.00051
S64W64LtGgtTg11AY.380.000499
S64W64StGgtCg11AY.390.000025
S64W64CtgGtgT11AY.39.10.00004
S64W64delTGG---11AY.39.20.001541
S64W64LtGgtTg11AY.39.20.001541
S64W64del2TGG--N11AY.40.000002
S64W64XtgGtgA11AY.4.20.000022
S64W64delTGG---11AY.4.20.000022
S64W64RTggAgg11AY.4.20.000022
S64W64delTGG---11AY.4.2.10.000149
S64W64CtgGtgT11AY.4.2.10.000149
S64W64delTGG---11AY.4.40.000409
S64W64RTggAgg11AY.4.50.000107
S64W64del2TGg--g11AY.4.50.000107
S64W64KTGgAAg11AY.410.000294
S64W64RTggCgg11AY.420.00004
S64W64del2tGGt--11AY.430.000004
S64W64KTGgAAg11AY.430.000004
S64W64GTgGGgT11AY.440.000006
S64W64delTGG---11AY.46.50.000198
S64W64delTGG---11AY.46.60.000072
S64W64RTggAgg11AY.470.000031
S64W64RTggAgg11AY.50.000021
S64W64LtGgtTg11AY.50.000021
S64W64GTggGgg11AY.50.000021
S64W64CtgGtgT11AY.50.000021
S64W64del2tGGt--11AY.50.000021
S64W64delTGG---11AY.5.30.000337
S64W64delTGG---11AY.5.40.000277
S64W64XtGgtAg11AY.530.000288
S64W64CtgGtgT11AY.530.000288
S64W64XtgGtgA11AY.590.00053
S64W64delTGG---11AY.590.00053
S64W64RTggAgg11AY.600.000938
S64W64delTGG---11AY.600.000938
S64W64RTggAgg11AY.650.000533
S64W64CtgGtgT11AY.670.000464
S64W64delTGG---11AY.670.000464
S64W64delTGG---11AY.680.000274
S64W64RTggCgg11AY.7.10.000113
S64W64delTGG---11AY.700.000209
S64W64CtgGtgT11AY.710.000475
S64W64delTGG---11AY.720.001361
S64W64LtGgtTg11AY.730.000665
S64W64delTGG---11AY.730.000665
S64W64delTGG---11AY.740.000116
S64W64CtgGtgT11AY.750.000056
S64W64RTggAgg11AY.750.000056
S64W64CtgGtgT11AY.760.004831
S64W64CtgGtgT11AY.830.001724
S64W64delTGG---11AY.840.000437
S64W64CtgGtgT11AY.850.000427
S64W64RTggAgg11AY.850.000427
S64W64LtGgtTg11AY.850.000427
S64W64GTggGgg11AY.850.000427
S64W64KTGgAAg11AY.850.000427
S64W64del1tGGtA-11AY.90.000068
S64W64LtGgtTg11AY.90.000068
S64W64CtgGtgT11AY.9.20.000037
S64W64CtgGtgT11AY.910.00073
S64W64delTGG---11AY.920.000287
S64W64delTGG---11AY.970.001701
S64W64delTGG---11AY.990.001049
S64W64del1tGgt-g11AY.99.20.000092
S64W64del1tGgt-g11B.10.000009
S64W64GTggGgg11B.10.000009
S64W64PTGgCCg11B.1.10.000018
S64W64StGgtCg11B.1.10.000018
S64W64delTGG---11B.1.1.1180.010204
S64W64delTGG---11B.1.1.1480.008772
S64W64RTggAgg11B.1.1.1530.001095
S64W64LtGgtTg11B.1.1.1860.003436
S64W64LtGgtTg11B.1.1.2160.00089
S64W64CtgGtgT11B.1.1.2160.00089
S64W64delTGG---11B.1.1.2160.00089
S64W64LtGgtTg11B.1.1.2220.000204
S64W64RTggCgg11B.1.1.2220.000204
S64W64LtGgtTg11B.1.1.250.000569
S64W64CtgGtgT11B.1.1.2580.003257
S64W64CtgGtgT11B.1.1.2770.000759
S64W64GTggGgg11B.1.1.280.000311
S64W64RTggAgg11B.1.1.280.000311
S64W64KTGgAAg11B.1.1.280.000311
S64W64ETGgGAg11B.1.1.280.000311
S64W64KTGgAAg11B.1.1.2840.000107
S64W64RTggCgg11B.1.1.3060.000438
S64W64delTGG---11B.1.1.3060.000438
S64W64delTGG---11B.1.1.3110.000358
S64W64delTGG---11B.1.1.3120.001912
S64W64delTGG---11B.1.1.3150.008475
S64W64delTGG---11B.1.1.3180.000302
S64W64CtgGtgT11B.1.1.3180.000302
S64W64RTggCgg11B.1.1.3180.000302
S64W64RTggAgg11B.1.1.330.000421
S64W64delTGG---11B.1.1.3610.045455
S64W64LtGgtTg11B.1.1.3740.002375
S64W64delTGG---11B.1.1.4340.000349
S64W64RTggCgg11B.1.1.4480.002033
S64W64LtGgtTg11B.1.1.4640.001473
S64W64delTGG---11B.1.1.5230.001563
S64W64del2tGGt--11B.1.1.5230.001563
S64W64KTGgAAg11B.1.1.70.000001
S64W64delTGG---11B.1.1.700.000341
S64W64CtgGtgT11B.1.1460.004237
S64W64GTggGgg11B.1.1600.000031
S64W64RTggAgg11B.1.160.150.00495
S64W64delTGG---11B.1.160.320.004292
S64W64GTggGgg11B.1.1770.000013
S64W64delTGG---11B.1.177.150.000631
S64W64delTGG---11B.1.177.160.000664
S64W64delTGG---11B.1.177.170.000821
S64W64delTGG---11B.1.177.180.00116
S64W64delTGG---11B.1.177.210.000076
S64W64RTggAgg11B.1.177.330.001645
S64W64delTGG---11B.1.177.40.000211
S64W64delTGG---11B.1.177.510.004566
S64W64CtgGtgT11B.1.177.540.000606
S64W64delTGG---11B.1.177.560.000668
S64W64XtgGtgA11B.1.177.580.001332
S64W64CtgGtgT11B.1.177.600.000218
S64W64RTggAgg11B.1.177.730.000566
S64W64delTGG---11B.1.177.770.000726
S64W64delTGG---11B.1.177.830.001481
S64W64delTGG---11B.1.1790.003759
S64W64LtGgtTg11B.1.1790.003759
S64W64LtGgtTg11B.1.1990.004132
S64W64GTggGgg11B.1.2210.000071
S64W64RTggCgg11B.1.2210.000071
S64W64LtGgtTg11B.1.2340.000132
S64W64delTGG---11B.1.2390.001221
S64W64RTggCgg11B.1.2410.000812
S64W64del1tgGtg-11B.1.258.240.010753
S64W64LtGgtTg11B.1.2650.001271
S64W64CtgGtgC11B.1.3320.003497
S64W64GTggGgg11B.1.3460.001311
S64W64LtGgtTg11B.1.3490.000715
S64W64RTggAgg11B.1.3510.00003
S64W64RTggAgg11B.1.3560.001727
S64W64RTggAgg11B.1.360.000146
S64W64CtgGtgT11B.1.360.000146
S64W64LtGgtTg11B.1.36.160.001425
S64W64LtGgtTg11B.1.36.290.000517
S64W64RTggCgg11B.1.3690.000285
S64W64delTGG---11B.1.3910.001127
S64W64delTGG---11B.1.4270.00005
S64W64CtgGtgC11B.1.4290.000024
S64W64GTggGgg11B.1.4290.000024
S64W64RTggCgg11B.1.4290.000024
S64W64RTggCgg11B.1.4310.04
S64W64RTggAgg11B.1.466.20.000391
S64W64CtgGtgC11B.1.4700.001404
S64W64LtGgtTg11B.1.5090.000866
S64W64MTGgATg11B.1.5250.000113
S64W64LtGgtTg11B.1.5250.000113
S64W64RTggAgg11B.1.5250.000113
S64W64CtgGtgT11B.1.5260.000024
S64W64LtGgtTg11B.1.5380.008065
S64W64CtgGtgT11B.1.5750.000303
S64W64RTggCgg11B.1.5820.000491
S64W64LtGgtTg11B.1.5950.000261
S64W64CtgGtgT11B.1.5950.000261
S64W64delTGG---11B.1.5960.000087
S64W64LtGgtTg11B.1.6090.000479
S64W64RTggAgg11B.1.617.10.000129
S64W64delTGG---11B.1.617.10.000129
S64W64GTggGgg11B.1.617.20.000004
S64W64FtGGtTT11B.1.617.20.000004
S64W64KTGgAAg11B.1.617.20.000004
S64W64CtgGtgT11B.1.619.10.000641
S64W64delTGG---11B.1.6200.000946
S64W64delTGG---11B.1.6210.000089
S64W64CtgGtgT11B.1.6230.000536
S64W64delTGG---11B.1.6370.000073
S64W64CtgGtgT11B.1.6370.000073
S64W64LtGgtTg11B.400.000364
S64W64LtGgtTg11B.520.010101
S64W64RTggAgg11B.550.00295
S64W64LtGgtTg11C.160.00106
S64W64GTggGgg11C.190.027027
S64W64delTGG---11C.350.000774
S64W64delTGG---11C.360.000911
S64W64delTGG---11C.36.30.000567
S64W64KTGgAAg11C.370.000116
S64W64MTGgATg11C.370.000116
S64W64CtgGtgT11C.370.000116
S64W64KTGgAAg11C.380.008065
S64W64XtgGtgA11D.20.000075
S64W64KTGgAAg11P.10.000016
S64W64delTGG---11P.1.10.10.00813
S64W64delTGG---11P.1.120.000484
S64W64LtGgtTg11P.1.70.000319
S64W64ETGgGAg11P.20.000187
S64W64GTggGgg11P.20.000187
S64W64LtGgtTg11P.20.000187
S64W64KTGgAAg11P.20.000187
S64W64ETGgGAg11P.70.004367
S64W64GTggGgg11P.70.004367
S64W64XtGgtAg11P.70.004367
S64W64delTGG---11Q.10.000126
S64W64XtgGtgA11Q.10.000126
S64W64delTGG---11Q.20.000613
S64W64CtgGtgT11Q.80.000165
S64W64XtGgtAg11R.10.00009
S64W64delTGG---11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.