CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 638

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S638T638TsynacAacG9975720.57372123474-23476
S638T638TsynacAacT9973350.33600823474-23476
S638T638TsynacAacC997900.090270823474-23476
S638T638InonsynaCaaTa6026010.99833923474-23476
S638T638InonsynaCAaTC60210.0016611323474-23476
S638T638AnonsynAcaGca138138123474-23476
S638T638KnonsynaCaaAa114114123474-23476
S638T638SnonsynAcaTca72710.98611123474-23476
S638T638SnonsynAcATcC7210.013888923474-23476
S638T638RnonsynaCaaGa3030123474-23476
S638T638deldelACA---1212123474-23476
S638T638del1delacAac-22123474-23476
S638T638VnonsynACaGTa22123474-23476
S638T638XnonsynACaTGa210.523474-23476
S638T638XnonsynACaTAa210.523474-23476
S638T638LnonsynACaTTa11123474-23476
S638T638NnonsynaCAaAC11123474-23476
S638T638PnonsynAcaCca11123474-23476
S638T638FnonsynACATTC11123474-23476

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S638T638TacAacG572997All0.000109
S638T638TacAacT335997All0.000064
S638T638TacAacC90997All0.000017
S638T638IaCaaTa601602All0.000115
S638T638IaCAaTC1602All0
S638T638TacAacG218343AY.40.000339
S638T638TacAacT124343AY.40.000193
S638T638TacAacC1343AY.40.000002
S638T638IaCaaTa143143AY.750.008011
S638T638AAcaGca138138All0.000026
S638T638KaCaaAa114114All0.000022
S638T638IaCaaTa113113B.1.1.70.000101
S638T638TacAacT108108B.1.177.40.022794
S638T638TacAacG85105B.1.1.70.000076
S638T638TacAacT19105B.1.1.70.000017
S638T638TacAacC1105B.1.1.70.000001
S638T638KaCaaAa9595AY.40.000148
S638T638TacAacG7480AY.30.000736
S638T638TacAacT680AY.30.00006
S638T638SAcaTca7172All0.000014
S638T638SAcATcC172All0
S638T638TacAacC5959B.1.6280.020789
S638T638SAcaTca4646B.1.4290.001082
S638T638IaCaaTa3838B.1.20.000335
S638T638IaCaaTa3737AY.40.000058
S638T638TacAacG3334AY.1030.000205
S638T638TacAacT134AY.1030.000006
S638T638AAcaGca3232B.1.595.30.842105
S638T638TacAacT3131A.250.563636
S638T638TacAacG2331B.1.617.20.000087
S638T638TacAacT831B.1.617.20.00003
S638T638RaCaaGa3030All0.000006
S638T638IaCaaTa2929P.10.000457
S638T638TacAacC2727AY.340.002618
S638T638AAcaGca2727B.1.617.20.000102
S638T638IaCaaTa2626B.1.10.000472
S638T638AAcaGca2020AY.40.000031
S638T638TacAacG1920B.1.1770.00025
S638T638TacAacT120B.1.1770.000013
S638T638TacAacG1619B.10.000147
S638T638TacAacT319B.10.000027
S638T638TacAacG1616AY.3.10.001364
S638T638TacAacG1515AY.1100.00169
S638T638AAcaGca1414AY.1030.000087
S638T638IaCaaTa1313B.1.36.180.005462
S638T638delACA---1212All0.000002
S638T638IaCaaTa1212AY.390.000297
S638T638TacAacG612AY.440.000037
S638T638TacAacT612AY.440.000037
S638T638IaCaaTa1212B.1.617.20.000045
S638T638IaCaaTa1111AY.1160.003155
S638T638IaCaaTa1111AY.3.10.000938
S638T638TacAacG1111AY.750.000616
S638T638AAcaGca1111AY.99.20.001014
S638T638IaCaaTa99AY.200.00035
S638T638IaCaaTa99AY.430.00004
S638T638TacAacG99AY.430.00004
S638T638IaCaaTa88AY.250.000048
S638T638IaCaaTa88D.20.0006
S638T638IaCaaTa88P.1.140.000382
S638T638AAcaGca77AY.1140.001618
S638T638IaCaaTa77AY.1190.000247
S638T638AAcaGca77P.10.00011
S638T638IaCaaTa66B.1.2340.000792
S638T638IaCaaTa66B.1.3240.009631
S638T638IaCaaTa66B.1.5260.000141
S638T638RaCaaGa55AY.250.00003
S638T638TacAacG45AY.390.000099
S638T638TacAacT15AY.390.000025
S638T638TacAacT55B.1.1.5190.000199
S638T638SAcaTca55B.1.1.70.000004
S638T638IaCaaTa44AY.1030.000025
S638T638IaCaaTa44AY.270.000259
S638T638SAcaTca44AY.4.20.000087
S638T638TacAacT44AY.410.001176
S638T638IaCaaTa44AY.440.000024
S638T638AAcaGca44AY.60.000165
S638T638KaCaaAa44AY.750.000224
S638T638IaCaaTa44AY.98.10.000194
S638T638TacAacG44B.1.1600.000125
S638T638RaCaaGa44B.1.20.000035
S638T638TacAacG44B.1.360.000584
S638T638KaCaaAa44P.60.012579
S638T638SAcaTca230.111111
S638T638SAcATcC130.055556
S638T638AAcaGca33A.10.000846
S638T638IaCaaTa33AP.10.004505
S638T638IaCaaTa33AY.1020.00008
S638T638TacAacG23AY.250.000012
S638T638TacAacT13AY.250.000006
S638T638IaCaaTa33AY.30.00003
S638T638SAcaTca33AY.330.0002
S638T638IaCaaTa33AY.460.000312
S638T638TacAacG23B.1.10.000036
S638T638TacAacT13B.1.10.000018
S638T638KaCaaAa33B.1.1.70.000003
S638T638IaCaaTa33B.1.1770.00004
S638T638SAcaTca33B.1.177.600.000655
S638T638TacAacT23B.1.20.000018
S638T638TacAacG13B.1.20.000009
S638T638TacAacG33B.1.2430.000209
S638T638KaCaaAa33B.1.617.20.000011
S638T638IaCaaTa33P.1.120.001452
S638T638KaCaaAa220.111111
S638T638TacAacC220.111111
S638T638IaCaaTa120.055556
S638T638IaCAaTC120.055556
S638T638VACaGTa22All0
S638T638del1acAac-22All0
S638T638XACaTGa12All0
S638T638XACaTAa12All0
S638T638TacAacT22AY.1020.000053
S638T638IaCaaTa22AY.140.000176
S638T638RaCaaGa22AY.200.000078
S638T638TacAacG12AY.200.000039
S638T638TacAacT12AY.200.000039
S638T638RaCaaGa22AY.440.000012
S638T638TacAacG22AY.50.000041
S638T638TacAacG22AY.740.000231
S638T638IaCaaTa22B.10.000018
S638T638TacAacG22B.1.1.1610.007067
S638T638TacAacG22B.1.1.630.000772
S638T638delACA---22B.1.1.70.000002
S638T638AAcaGca22B.1.1.70.000002
S638T638RaCaaGa22B.1.1.70.000002
S638T638IaCaaTa22B.1.1600.000062
S638T638SAcaTca22B.1.20.000018
S638T638TacAacG22B.1.2210.000142
S638T638RaCaaGa22B.1.2470.029851
S638T638TacAacG12B.1.3510.00003
S638T638TacAacT12B.1.3510.00003
S638T638VACaGTa22B.1.4270.000101
S638T638IaCaaTa22B.1.4700.002809
S638T638IaCaaTa22B.1.5950.000522
S638T638RaCaaGa22B.1.617.20.000008
S638T638IaCaaTa22P.1.10.000635
S638T638FACATTC110.055556
S638T638LACaTTa110.055556
S638T638NaCAaAC110.055556
S638T638XACaTAa110.055556
S638T638TacAacT11A.190.009434
S638T638PAcaCca11All0
S638T638NaCAaAC11All0
S638T638FACATTC11All0
S638T638LACaTTa11All0
S638T638IaCaaTa11AY.1010.00049
S638T638AAcaGca11AY.1020.000027
S638T638IaCaaTa11AY.1090.00074
S638T638TacAacT11AY.1090.00074
S638T638AAcaGca11AY.1170.000085
S638T638RaCaaGa11AY.1180.000063
S638T638TacAacG11AY.1190.000035
S638T638IaCaaTa11AY.1210.000135
S638T638TacAacG11AY.230.00007
S638T638delACA---11AY.250.000006
S638T638RaCaaGa11AY.260.000028
S638T638IaCaaTa11AY.260.000028
S638T638IaCaaTa11AY.290.000016
S638T638IaCaaTa11AY.330.000067
S638T638TacAacT11AY.360.000148
S638T638delACA---11AY.370.000316
S638T638delACA---11AY.380.000499
S638T638delACA---11AY.390.000025
S638T638KaCaaAa11AY.390.000025
S638T638IaCaaTa11AY.39.10.00004
S638T638RaCaaGa11AY.40.000002
S638T638IaCaaTa11AY.4.2.10.000149
S638T638IaCaaTa11AY.420.00004
S638T638RaCaaGa11AY.430.000004
S638T638del1acAac-11AY.430.000004
S638T638delACA---11AY.430.000004
S638T638AAcaGca11AY.430.000004
S638T638XACaTGa11AY.440.000006
S638T638KaCaaAa11AY.440.000006
S638T638SAcaTca11AY.440.000006
S638T638IaCaaTa11AY.450.000122
S638T638TacAacT11AY.450.000122
S638T638TacAacT11AY.46.20.000635
S638T638IaCaaTa11AY.46.30.000934
S638T638IaCaaTa11AY.46.40.000165
S638T638IaCaaTa11AY.470.000031
S638T638IaCaaTa11AY.50.000021
S638T638delACA---11AY.50.000021
S638T638IaCaaTa11AY.5.30.000337
S638T638IaCaaTa11AY.540.000095
S638T638TacAacT11AY.610.000105
S638T638TacAacG11AY.670.000464
S638T638SAcaTca11AY.690.000187
S638T638IaCaaTa11AY.770.001127
S638T638TacAacG11AY.840.000437
S638T638IaCaaTa11AY.870.000833
S638T638IaCaaTa11AY.90.000068
S638T638IaCaaTa11AY.9.20.000037
S638T638TacAacG11AY.920.000287
S638T638AAcaGca11AY.930.000273
S638T638IaCaaTa11AY.99.20.000092
S638T638RaCaaGa11B0.000128
S638T638delACA---11B.10.000009
S638T638RaCaaGa11B.10.000009
S638T638AAcaGca11B.10.000009
S638T638KaCaaAa11B.10.000009
S638T638SAcaTca11B.10.000009
S638T638PAcaCca11B.10.000009
S638T638RaCaaGa11B.1.10.000018
S638T638TacAacG11B.1.1.100.001115
S638T638IaCaaTa11B.1.1.1610.003534
S638T638IaCaaTa11B.1.1.1640.005155
S638T638IaCaaTa11B.1.1.2160.00089
S638T638TacAacT11B.1.1.2220.000204
S638T638IaCaaTa11B.1.1.2310.003096
S638T638SAcaTca11B.1.1.3060.000438
S638T638IaCaaTa11B.1.1.3060.000438
S638T638IaCaaTa11B.1.1.3070.002532
S638T638IaCaaTa11B.1.1.3690.000446
S638T638TacAacG11B.1.1.390.00051
S638T638IaCaaTa11B.1.1.4320.001266
S638T638IaCaaTa11B.1.1.4330.001425
S638T638TacAacG11B.1.1.4450.037037
S638T638RaCaaGa11B.1.1.4480.002033
S638T638TacAacG11B.1.177.120.000152
S638T638IaCaaTa11B.1.177.200.001517
S638T638AAcaGca11B.1.177.210.000076
S638T638TacAacG11B.1.177.440.000519
S638T638AAcaGca11B.1.177.440.000519
S638T638delACA---11B.1.1790.003759
S638T638del1acAac-11B.1.20.000009
S638T638TacAacG11B.1.220.001318
S638T638RaCaaGa11B.1.2210.000071
S638T638IaCaaTa11B.1.2210.000071
S638T638AAcaGca11B.1.258.110.000396
S638T638TacAacG11B.1.3110.000275
S638T638IaCaaTa11B.1.3110.000275
S638T638IaCaaTa11B.1.3510.00003
S638T638RaCaaGa11B.1.3510.00003
S638T638AAcaGca11B.1.360.000146
S638T638IaCaaTa11B.1.3910.001127
S638T638TacAacT11B.1.4290.000024
S638T638IaCaaTa11B.1.4290.000024
S638T638SAcaTca11B.1.466.20.000391
S638T638IaCaaTa11B.1.5230.002451
S638T638AAcaGca11B.1.5750.000303
S638T638IaCaaTa11B.1.5800.004065
S638T638IaCaaTa11B.1.5990.00365
S638T638SAcaTca11B.1.617.20.000004
S638T638delACA---11B.1.6200.000946
S638T638TacAacG11B.1.6270.00202
S638T638TacAacG11C.370.000116
S638T638IaCaaTa11N.60.007092
S638T638RaCaaGa11P.10.000016
S638T638TacAacT11P.10.000016
S638T638TacAacG11P.1.170.000162
S638T638TacAacT11P.1.17.10.000875
S638T638delACA---11P.1.20.001156
S638T638IaCaaTa11Q.10.000126
S638T638AAcaGca11Q.10.000126
S638T638IaCaaTa11R.10.00009