CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 631 & Codon = Tct

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S631P631SnonsynCctTct170417020.99882623453-23455

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S631P631SCctTct17021704All0.000326
S631P631SCctTct624624B.1.1.70.000559
S631P631SCctTct284284B.1.20.002501
S631P631SCctTct190190AY.40.000296
S631P631SCctTct4242B.10.000385
S631P631SCctTct3535B.1.1770.000461
S631P631SCctTct3030AY.1030.000186
S631P631SCctTct2828AY.430.000124
S631P631SCctTct2626B.1.617.20.000098
S631P631SCctTct2525B.1.1600.00078
S631P631SCctTct2020B.1.1.5190.000794
S631P631SCctTct1717AY.30.000169
S631P631SCctTct1616AY.250.000096
S631P631SCctTct1616AY.440.000097
S631P631SCctTct1414AY.4.20.000304
S631P631SCctTct1414P.10.000221
S631P631SCctTct1212AY.130.001932
S631P631SCctTct1212B.1.1.4320.01519
S631P631SCctTct1212B.1.5260.000282
S631P631SCctTct1212Q.10.001516
S631P631SCctTct1010B.1.10.000181
S631P631SCctTct1010B.1.177.860.001835
S631P631SCctTct99AY.50.000186
S631P631SCctTct88C.360.007286
S631P631SCctTct77B.1.1.3740.016627
S631P631SCctTct66AY.23.10.002504
S631P631SCctTct66B.1.110.21
S631P631SCctTct66B.1.2430.000418
S631P631SCctTct66B.1.619.10.003849
S631P631SCctTct55AY.290.000079
S631P631SCctTct55AY.390.000124
S631P631SCctTct55AY.39.10.000198
S631P631SCctTct55AY.98.10.000242
S631P631SCctTct55B.1.160.150.024752
S631P631SCctTct55B.1.36.290.002587
S631P631SCctTct55B.1.5960.000436
S631P631SCctTct55C.370.00058
S631P631SCctTct240.111111
S631P631SCctTct44AY.610.000419
S631P631SCctTct44AY.7.10.000451
S631P631SCctTct44AY.740.000463
S631P631SCctTct44B.1.177.810.000757
S631P631SCctTct44B.1.3510.000119
S631P631SCctTct33AY.1020.00008
S631P631SCctTct33AY.260.000085
S631P631SCctTct33B0.000383
S631P631SCctTct33B.1.1.1340.034091
S631P631SCctTct33B.1.177.60.00293
S631P631SCctTct33B.1.438.10.000322
S631P631SCctTct33B.1.5250.000339
S631P631SCctTct33P.1.140.000143
S631P631SCctTct33P.1.150.000697
S631P631SCctTct33P.20.00056
S631P631SCctTct22A.10.000564
S631P631SCctTct22AY.1100.000225
S631P631SCctTct22AY.1180.000125
S631P631SCctTct22AY.120.000632
S631P631SCctTct22AY.120.10.000642
S631P631SCctTct22AY.210.003795
S631P631SCctTct22AY.230.000139
S631P631SCctTct22AY.450.000243
S631P631SCctTct22AY.460.000208
S631P631SCctTct22AY.470.000062
S631P631SCctTct22AY.60.000082
S631P631SCctTct22AY.750.000112
S631P631SCctTct22B.1.1.1890.003026
S631P631SCctTct22B.1.1.2300.018349
S631P631SCctTct22B.1.1.3480.001592
S631P631SCctTct22B.1.1.370.000386
S631P631SCctTct22B.1.1.3970.004505
S631P631SCctTct22B.1.1.4340.000697
S631P631SCctTct22B.1.160.260.004843
S631P631SCctTct22B.1.4680.011429
S631P631SCctTct22B.1.4970.00063
S631P631SCctTct22B.1.617.10.000258
S631P631SCctTct22C.36.30.001134
S631P631SCctTct22Q.80.00033
S631P631SCctTct11A.50.001923
S631P631SCctTct11AE.80.000489
S631P631SCctTct11AU.20.002421
S631P631SCctTct11AY.1000.000046
S631P631SCctTct11AY.1130.000142
S631P631SCctTct11AY.1210.000135
S631P631SCctTct11AY.200.000039
S631P631SCctTct11AY.29.10.000221
S631P631SCctTct11AY.330.000067
S631P631SCctTct11AY.360.000148
S631P631SCctTct11AY.46.50.000198
S631P631SCctTct11AY.510.000909
S631P631SCctTct11AY.540.000095
S631P631SCctTct11AY.690.000187
S631P631SCctTct11AY.7.20.000559
S631P631SCctTct11AY.90.000068
S631P631SCctTct11AY.9.10.000084
S631P631SCctTct11AY.9.20.000037
S631P631SCctTct11AY.930.000273
S631P631SCctTct11AY.940.000443
S631P631SCctTct11AY.970.001701
S631P631SCctTct11AZ.10.000867
S631P631SCctTct11B.1.1.10.000327
S631P631SCctTct11B.1.1.1700.001247
S631P631SCctTct11B.1.1.2200.001859
S631P631SCctTct11B.1.1.2220.000204
S631P631SCctTct11B.1.1.2320.001815
S631P631SCctTct11B.1.1.2690.001353
S631P631SCctTct11B.1.1.280.000311
S631P631SCctTct11B.1.1.2840.000107
S631P631SCctTct11B.1.1.2890.002083
S631P631SCctTct11B.1.1.3180.000302
S631P631SCctTct11B.1.1.3680.003086
S631P631SCctTct11B.1.1.390.00051
S631P631SCctTct11B.1.1.4610.012048
S631P631SCctTct11B.1.1110.001175
S631P631SCctTct11B.1.177.160.000664
S631P631SCctTct11B.1.177.210.000076
S631P631SCctTct11B.1.2230.002778
S631P631SCctTct11B.1.2400.000216
S631P631SCctTct11B.1.258.170.000104
S631P631SCctTct11B.1.2650.001271
S631P631SCctTct11B.1.3050.002151
S631P631SCctTct11B.1.3110.000275
S631P631SCctTct11B.1.3490.000715
S631P631SCctTct11B.1.36.310.001751
S631P631SCctTct11B.1.36.80.001
S631P631SCctTct11B.1.4030.003268
S631P631SCctTct11B.1.4530.003236
S631P631SCctTct11B.1.5460.003704
S631P631SCctTct11B.1.5510.00129
S631P631SCctTct11B.1.5610.000397
S631P631SCctTct11B.1.5650.00081
S631P631SCctTct11B.1.6090.000479
S631P631SCctTct11B.1.6120.002653
S631P631SCctTct11B.1.6210.000089
S631P631SCctTct11B.1.6230.000536
S631P631SCctTct11B.1.6370.000073
S631P631SCctTct11D.20.000075
S631P631SCctTct11N.50.001767
S631P631SCctTct11P.1.100.000269
S631P631SCctTct11P.70.004367
S631P631SCctTct11Q.30.000145
S631P631SCctTct11W.10.008696
S631P631SCctTct11Z.10.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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