CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 627

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S627D627DsyngaTgaC13751375123441-23443
S627D627GnonsyngAtgGt6486470.99845723441-23443
S627D627GnonsyngATgGA64810.0015432123441-23443
S627D627HnonsynGatCat346346123441-23443
S627D627EnonsyngaTgaG2992950.98662223441-23443
S627D627EnonsyngaTgaA29940.013377923441-23443
S627D627NnonsynGatAat290290123441-23443
S627D627YnonsynGatTat2502490.99623441-23443
S627D627YnonsynGaTTaC25010.00423441-23443
S627D627AnonsyngAtgCt7777123441-23443
S627D627deldelGAT---1111123441-23443
S627D627TnonsynGAtACt1010123441-23443
S627D627PnonsynGAtCCt1010123441-23443
S627D627VnonsyngAtgTt55123441-23443
S627D627SnonsynGAtAGt320.66666723441-23443
S627D627SnonsynGATAGC310.33333323441-23443
S627D627KnonsynGaTAaA11123441-23443
S627D627RnonsynGATAGA11123441-23443

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S627D627DgaTgaC13751375All0.000263
S627D627GgAtgGt647648All0.000124
S627D627GgATgGA1648All0
S627D627GgAtgGt597597B.1.1.70.000534
S627D627HGatCat346346All0.000066
S627D627EgaTgaG295299All0.000056
S627D627EgaTgaA4299All0.000001
S627D627NGatAat290290All0.000055
S627D627DgaTgaC269269B.1.1.70.000241
S627D627YGatTat249250All0.000048
S627D627YGaTTaC1250All0
S627D627HGatCat191191B.1.1.70.000171
S627D627EgaTgaG154154AY.40.00024
S627D627NGatAat144144AY.40.000224
S627D627DgaTgaC131131B.1.1.2140.007265
S627D627DgaTgaC130130AY.440.000791
S627D627DgaTgaC9696B.1.4201
S627D627DgaTgaC7979B.1.1.1760.03471
S627D627AgAtgCt7777All0.000015
S627D627YGatTat7575B.1.1.70.000067
S627D627DgaTgaC7070B.1.20.000616
S627D627DgaTgaC6060B.1.617.20.000226
S627D627DgaTgaC5757B.1.1770.000751
S627D627DgaTgaC5656B.1.4090.04375
S627D627HGatCat5555B.1.5960.004793
S627D627DgaTgaC5050AY.40.000078
S627D627DgaTgaC4949AY.250.000295
S627D627EgaTgaG4747AY.440.000286
S627D627NGatAat3535B.1.1.70.000031
S627D627DgaTgaC2828AY.390.000692
S627D627YGatTat2727AY.40.000042
S627D627DgaTgaC2525B.10.000229
S627D627NGatAat2525B.1.6280.008809
S627D627HGatCat2424AY.40.000037
S627D627EgaTgaG2424AY.60.000987
S627D627YGatTat2020AY.250.00012
S627D627YGatTat2020AY.46.50.003968
S627D627EgaTgaG2020B.1.1600.000624
S627D627DgaTgaC1919AY.260.000538
S627D627AgAtgCt1919AY.40.00003
S627D627YGatTat1819AY.430.00008
S627D627YGaTTaC119AY.430.000004
S627D627HGatCat1717AY.1030.000106
S627D627AgAtgCt1717B.1.1110.019976
S627D627DgaTgaC1616AY.1000.000736
S627D627DgaTgaC1616AY.34.10.008159
S627D627DgaTgaC1414AY.340.001358
S627D627HGatCat1414P.10.000221
S627D627HGatCat1313AY.410.003821
S627D627NGatAat1212B.1.20.000106
S627D627NGatAat1212B.1.617.20.000045
S627D627EgaTgaG1212B.1.617.20.000045
S627D627delGAT---1111All0.000002
S627D627PGAtCCt1010All0.000002
S627D627TGAtACt1010All0.000002
S627D627EgaTgaG1010AY.30.000099
S627D627DgaTgaC1010B.1.1.5190.000397
S627D627YGatTat1010B.1.617.20.000038
S627D627DgaTgaC1010P.10.000158
S627D627NGatAat1010P.10.000158
S627D627YGatTat1010Q.10.001263
S627D627DgaTgaC99AY.430.00004
S627D627DgaTgaC99B.1.5260.000212
S627D627TGAtACt88AY.440.000049
S627D627DgaTgaC88AY.920.002298
S627D627DgaTgaC88B.1.6210.000708
S627D627DgaTgaC77AY.1020.000186
S627D627DgaTgaC77AY.30.00007
S627D627GgAtgGt77AY.40.000011
S627D627DgaTgaC77AY.540.000667
S627D627DgaTgaC77AY.98.10.000339
S627D627AgAtgCt77B.1.1.70.000006
S627D627GgAtgGt77B.1.177.600.001529
S627D627NGatAat77B.1.2340.000924
S627D627DgaTgaC77C.230.040698
S627D627DgaTgaC77C.370.000812
S627D627NGatAat66B.1.6200.005676
S627D627VgAtgTt55All0.000001
S627D627AgAtgCt55AY.1190.000177
S627D627EgaTgaG55AY.39.10.000198
S627D627YGatTat55AY.920.001436
S627D627DgaTgaC55B.1.10.000091
S627D627HGatCat44AA.30.108108
S627D627HGatCat44AY.1000.000184
S627D627AgAtgCt44AY.1000.000184
S627D627DgaTgaC44AY.1030.000025
S627D627YGatTat44AY.1030.000025
S627D627DgaTgaC44AY.1180.000251
S627D627YGatTat44AY.330.000267
S627D627DgaTgaC44AY.4.50.00043
S627D627DgaTgaC44AY.470.000124
S627D627DgaTgaC44AY.50.000083
S627D627NGatAat44B.10.000037
S627D627delGAT---44B.1.1.70.000004
S627D627EgaTgaG44B.1.1.70.000004
S627D627YGatTat44P.10.000063
S627D627GgAtgGt44P.1.140.000191
S627D627YGatTat44P.1.170.000647
S627D627DgaTgaC44R.10.00036
S627D627GgAtgGt230.111111
S627D627GgATgGA130.055556
S627D627SGAtAGt23All0
S627D627SGATAGC13All0
S627D627GgAtgGt33AY.1030.000019
S627D627DgaTgaC33AY.1200.000112
S627D627EgaTgaG33AY.250.000018
S627D627EgaTgaG33B.10.000027
S627D627GgAtgGt33B.1.10.000054
S627D627DgaTgaC33B.1.1.1480.026316
S627D627EgaTgaG33B.1.1.2220.000612
S627D627HGatCat33B.1.1.4160.002715
S627D627YGatTat33B.1.1600.000094
S627D627NGatAat33B.1.2210.000213
S627D627DgaTgaC33B.1.2580.0002
S627D627GgAtgGt33B.1.3510.000089
S627D627YGatTat33B.1.4330.009585
S627D627DgaTgaC33B.1.5960.000261
S627D627AgAtgCt33B.1.617.20.000011
S627D627GgAtgGt33P.10.000047
S627D627YGatTat33P.1.40.00293
S627D627NGatAat220.111111
S627D627SGAtAGt220.111111
S627D627GgAtgGt22AY.1000.000092
S627D627YGatTat22AY.1020.000053
S627D627EgaTgaG22AY.1030.000012
S627D627AgAtgCt22AY.1060.00067
S627D627HGatCat22AY.1190.000071
S627D627NGatAat22AY.1190.000071
S627D627AgAtgCt22AY.1210.000271
S627D627GgAtgGt22AY.200.000078
S627D627DgaTgaC22AY.230.000139
S627D627NGatAat22AY.30.00002
S627D627EgaTgaG22AY.3.10.000171
S627D627YGatTat22AY.4.20.000043
S627D627NGatAat22AY.410.000588
S627D627AgAtgCt22AY.430.000009
S627D627AgAtgCt22AY.440.000012
S627D627GgAtgGt22AY.440.000012
S627D627YGatTat22AY.440.000012
S627D627DgaTgaC22AY.46.50.000397
S627D627YGatTat22AY.50.000041
S627D627YGatTat22AY.540.000191
S627D627DgaTgaC22AY.9.20.000073
S627D627YGatTat22AY.9.20.000073
S627D627YGatTat22B.10.000018
S627D627GgAtgGt22B.10.000018
S627D627NGatAat22B.1.1.3180.000604
S627D627PGAtCCt22B.1.1.70.000002
S627D627GgAtgGt22B.1.1.830.00542
S627D627DgaTgaC22B.1.160.170.003401
S627D627DgaTgaC22B.1.258.170.000208
S627D627DgaTgaC22B.1.3510.000059
S627D627HGatCat22B.1.3510.000059
S627D627DgaTgaC22B.1.3890.002004
S627D627DgaTgaC22B.1.4290.000047
S627D627DgaTgaC22B.1.4680.011429
S627D627HGatCat22B.1.4700.002809
S627D627HGatCat22C.36.30.001134
S627D627YGatTat22D.20.00015
S627D627NGatAat22P.1.140.000096
S627D627DgaTgaC22Q.10.000253
S627D627RGATAGA110.055556
S627D627KGaTAaA110.055556
S627D627EgaTgaA110.055556
S627D627NGatAat11A.2.5.20.001572
S627D627DgaTgaC11A.23.10.000704
S627D627KGaTAaA11All0
S627D627RGATAGA11All0
S627D627EgaTgaG11AY.10.000396
S627D627NGatAat11AY.1000.000046
S627D627AgAtgCt11AY.1020.000027
S627D627NGatAat11AY.1020.000027
S627D627AgAtgCt11AY.1030.000006
S627D627DgaTgaC11AY.1060.000335
S627D627YGatTat11AY.1140.000231
S627D627AgAtgCt11AY.1160.000287
S627D627EgaTgaG11AY.1170.000085
S627D627YGatTat11AY.1170.000085
S627D627AgAtgCt11AY.1170.000085
S627D627delGAT---11AY.1180.000063
S627D627AgAtgCt11AY.1180.000063
S627D627YGatTat11AY.1180.000063
S627D627YGatTat11AY.1190.000035
S627D627YGatTat11AY.120.000316
S627D627YGatTat11AY.1200.000037
S627D627NGatAat11AY.120.10.000321
S627D627DgaTgaC11AY.120.2.10.000498
S627D627NGatAat11AY.1210.000135
S627D627HGatCat11AY.140.000088
S627D627DgaTgaC11AY.180.010101
S627D627YGatTat11AY.200.000039
S627D627DgaTgaC11AY.200.000039
S627D627AgAtgCt11AY.250.000006
S627D627HGatCat11AY.260.000028
S627D627DgaTgaC11AY.270.000065
S627D627YGatTat11AY.290.000016
S627D627DgaTgaC11AY.290.000016
S627D627GgAtgGt11AY.30.00001
S627D627HGatCat11AY.3.10.000085
S627D627DgaTgaC11AY.300.000396
S627D627EgaTgaA11AY.330.000067
S627D627AgAtgCt11AY.360.000148
S627D627YGatTat11AY.370.000316
S627D627delGAT---11AY.380.000499
S627D627NGatAat11AY.390.000025
S627D627AgAtgCt11AY.390.000025
S627D627DgaTgaC11AY.39.10.00004
S627D627AgAtgCt11AY.4.30.000842
S627D627DgaTgaC11AY.4.30.000842
S627D627YGatTat11AY.420.00004
S627D627delGAT---11AY.430.000004
S627D627HGatCat11AY.430.000004
S627D627PGAtCCt11AY.430.000004
S627D627EgaTgaG11AY.430.000004
S627D627NGatAat11AY.450.000122
S627D627PGAtCCt11AY.460.000104
S627D627DgaTgaC11AY.460.000104
S627D627AgAtgCt11AY.550.000917
S627D627GgAtgGt11AY.590.00053
S627D627DgaTgaC11AY.60.000041
S627D627HGatCat11AY.60.000041
S627D627DgaTgaC11AY.610.000105
S627D627YGatTat11AY.620.000436
S627D627DgaTgaC11AY.680.000274
S627D627NGatAat11AY.70.000196
S627D627YGatTat11AY.70.000196
S627D627DgaTgaC11AY.70.000196
S627D627PGAtCCt11AY.700.000209
S627D627DgaTgaC11AY.740.000116
S627D627PGAtCCt11AY.75.10.00018
S627D627DgaTgaC11AY.75.10.00018
S627D627YGatTat11AY.80.000606
S627D627YGatTat11AY.840.000437
S627D627DgaTgaC11AY.90.000068
S627D627EgaTgaG11AY.9.20.000037
S627D627GgAtgGt11AY.940.000443
S627D627PGAtCCt11AY.960.002075
S627D627DgaTgaC11AY.980.000079
S627D627HGatCat11AY.980.000079
S627D627DgaTgaC11AY.99.20.000092
S627D627SGATAGC11B0.000128
S627D627PGAtCCt11B.10.000009
S627D627VgAtgTt11B.10.000009
S627D627NGatAat11B.1.10.000018
S627D627delGAT---11B.1.10.000018
S627D627YGatTat11B.1.10.000018
S627D627EgaTgaA11B.1.10.000018
S627D627DgaTgaC11B.1.1.10.000327
S627D627DgaTgaC11B.1.1.1910.004762
S627D627YGatTat11B.1.1.2160.00089
S627D627delGAT---11B.1.1.2200.001859
S627D627DgaTgaC11B.1.1.2300.009174
S627D627DgaTgaC11B.1.1.2400.004695
S627D627DgaTgaC11B.1.1.2610.008621
S627D627HGatCat11B.1.1.2630.001558
S627D627DgaTgaC11B.1.1.280.000311
S627D627DgaTgaC11B.1.1.2840.000107
S627D627DgaTgaC11B.1.1.2940.001266
S627D627DgaTgaC11B.1.1.3180.000302
S627D627DgaTgaC11B.1.1.3480.000796
S627D627YGatTat11B.1.1.3760.005952
S627D627GgAtgGt11B.1.1.4340.000349
S627D627DgaTgaC11B.1.1.450.014085
S627D627GgAtgGt11B.1.1.5190.00004
S627D627VgAtgTt11B.1.1.5190.00004
S627D627VgAtgTt11B.1.1.70.000001
S627D627AgAtgCt11B.1.1080.005814
S627D627DgaTgaC11B.1.110.30.000718
S627D627DgaTgaC11B.1.1460.004237
S627D627NGatAat11B.1.1600.000031
S627D627DgaTgaC11B.1.1600.000031
S627D627DgaTgaC11B.1.177.230.003236
S627D627YGatTat11B.1.177.430.001477
S627D627EgaTgaA11B.1.177.720.00339
S627D627DgaTgaC11B.1.177.80.000752
S627D627DgaTgaC11B.1.177.810.000189
S627D627GgAtgGt11B.1.20.000009
S627D627HGatCat11B.1.20.000009
S627D627YGatTat11B.1.20.000009
S627D627DgaTgaC11B.1.2010.005682
S627D627EgaTgaG11B.1.2210.000071
S627D627DgaTgaC11B.1.2210.000071
S627D627NGatAat11B.1.2430.00007
S627D627DgaTgaC11B.1.258.190.007092
S627D627DgaTgaC11B.1.258.30.001675
S627D627DgaTgaC11B.1.2790.000514
S627D627YGatTat11B.1.30.002618
S627D627DgaTgaC11B.1.3110.000275
S627D627DgaTgaC11B.1.3330.010526
S627D627PGAtCCt11B.1.3510.00003
S627D627AgAtgCt11B.1.3510.00003
S627D627AgAtgCt11B.1.351.20.000303
S627D627NGatAat11B.1.36.120.009615
S627D627NGatAat11B.1.3770.004566
S627D627NGatAat11B.1.3890.001002
S627D627NGatAat11B.1.3960.000706
S627D627DgaTgaC11B.1.4270.00005
S627D627NGatAat11B.1.4290.000024
S627D627NGatAat11B.1.4710.002732
S627D627TGAtACt11B.1.5250.000113
S627D627AgAtgCt11B.1.5600.00463
S627D627DgaTgaC11B.1.5800.004065
S627D627VgAtgTt11B.1.5820.000491
S627D627VgAtgTt11B.1.5960.000087
S627D627DgaTgaC11B.1.6060.006024
S627D627DgaTgaC11B.1.6100.003546
S627D627HGatCat11B.1.617.10.000129
S627D627HGatCat11B.1.617.20.000004
S627D627TGAtACt11B.1.617.20.000004
S627D627NGatAat11B.1.6190.000871
S627D627delGAT---11B.1.6200.000946
S627D627HGatCat11B.1.621.10.000506
S627D627GgAtgGt11B.1.6370.000073
S627D627DgaTgaC11B.1.9.50.005682
S627D627DgaTgaC11B.400.000364
S627D627PGAtCCt11B.60.00091
S627D627HGatCat11B.60.00091
S627D627HGatCat11C.370.000116
S627D627YGatTat11C.370.000116
S627D627NGatAat11C.370.000116
S627D627YGatTat11P.1.120.000484
S627D627DgaTgaC11P.1.140.000048
S627D627EgaTgaG11P.1.140.000048
S627D627YGatTat11P.1.160.000374
S627D627DgaTgaC11P.1.80.004785
S627D627NGatAat11P.20.000187
S627D627GgAtgGt11P.20.000187
S627D627DgaTgaC11Q.80.000165
S627D627delGAT---11R.10.00009