CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 627

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	627	D627D		syn	gaT	gaC	1375	1375	1	23441-23443
S	627	D627G		nonsyn	gAt	gGt	648	647	0.998457	23441-23443
S	627	D627G		nonsyn	gAT	gGA	648	1	0.00154321	23441-23443
S	627	D627H		nonsyn	Gat	Cat	346	346	1	23441-23443
S	627	D627E		nonsyn	gaT	gaG	299	295	0.986622	23441-23443
S	627	D627E		nonsyn	gaT	gaA	299	4	0.0133779	23441-23443
S	627	D627N		nonsyn	Gat	Aat	290	290	1	23441-23443
S	627	D627Y		nonsyn	Gat	Tat	250	249	0.996	23441-23443
S	627	D627Y		nonsyn	GaT	TaC	250	1	0.004	23441-23443
S	627	D627A		nonsyn	gAt	gCt	77	77	1	23441-23443
S	627	D627del		del	GAT	---	11	11	1	23441-23443
S	627	D627T		nonsyn	GAt	ACt	10	10	1	23441-23443
S	627	D627P		nonsyn	GAt	CCt	10	10	1	23441-23443
S	627	D627V		nonsyn	gAt	gTt	5	5	1	23441-23443
S	627	D627S		nonsyn	GAt	AGt	3	2	0.666667	23441-23443
S	627	D627S		nonsyn	GAT	AGC	3	1	0.333333	23441-23443
S	627	D627K		nonsyn	GaT	AaA	1	1	1	23441-23443
S	627	D627R		nonsyn	GAT	AGA	1	1	1	23441-23443

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	627	D627D	gaT	gaC	1375	1375	All	0.000263
S	627	D627G	gAt	gGt	647	648	All	0.000124
S	627	D627G	gAT	gGA	1	648	All	0
S	627	D627G	gAt	gGt	597	597	B.1.1.7	0.000534
S	627	D627H	Gat	Cat	346	346	All	0.000066
S	627	D627E	gaT	gaG	295	299	All	0.000056
S	627	D627E	gaT	gaA	4	299	All	0.000001
S	627	D627N	Gat	Aat	290	290	All	0.000055
S	627	D627D	gaT	gaC	269	269	B.1.1.7	0.000241
S	627	D627Y	Gat	Tat	249	250	All	0.000048
S	627	D627Y	GaT	TaC	1	250	All	0
S	627	D627H	Gat	Cat	191	191	B.1.1.7	0.000171
S	627	D627E	gaT	gaG	154	154	AY.4	0.00024
S	627	D627N	Gat	Aat	144	144	AY.4	0.000224
S	627	D627D	gaT	gaC	131	131	B.1.1.214	0.007265
S	627	D627D	gaT	gaC	130	130	AY.44	0.000791
S	627	D627D	gaT	gaC	96	96	B.1.420	1
S	627	D627D	gaT	gaC	79	79	B.1.1.176	0.03471
S	627	D627A	gAt	gCt	77	77	All	0.000015
S	627	D627Y	Gat	Tat	75	75	B.1.1.7	0.000067
S	627	D627D	gaT	gaC	70	70	B.1.2	0.000616
S	627	D627D	gaT	gaC	60	60	B.1.617.2	0.000226
S	627	D627D	gaT	gaC	57	57	B.1.177	0.000751
S	627	D627D	gaT	gaC	56	56	B.1.409	0.04375
S	627	D627H	Gat	Cat	55	55	B.1.596	0.004793
S	627	D627D	gaT	gaC	50	50	AY.4	0.000078
S	627	D627D	gaT	gaC	49	49	AY.25	0.000295
S	627	D627E	gaT	gaG	47	47	AY.44	0.000286
S	627	D627N	Gat	Aat	35	35	B.1.1.7	0.000031
S	627	D627D	gaT	gaC	28	28	AY.39	0.000692
S	627	D627Y	Gat	Tat	27	27	AY.4	0.000042
S	627	D627D	gaT	gaC	25	25	B.1	0.000229
S	627	D627N	Gat	Aat	25	25	B.1.628	0.008809
S	627	D627H	Gat	Cat	24	24	AY.4	0.000037
S	627	D627E	gaT	gaG	24	24	AY.6	0.000987
S	627	D627Y	Gat	Tat	20	20	AY.25	0.00012
S	627	D627Y	Gat	Tat	20	20	AY.46.5	0.003968
S	627	D627E	gaT	gaG	20	20	B.1.160	0.000624
S	627	D627D	gaT	gaC	19	19	AY.26	0.000538
S	627	D627A	gAt	gCt	19	19	AY.4	0.00003
S	627	D627Y	Gat	Tat	18	19	AY.43	0.00008
S	627	D627Y	GaT	TaC	1	19	AY.43	0.000004
S	627	D627H	Gat	Cat	17	17	AY.103	0.000106
S	627	D627A	gAt	gCt	17	17	B.1.111	0.019976
S	627	D627D	gaT	gaC	16	16	AY.100	0.000736
S	627	D627D	gaT	gaC	16	16	AY.34.1	0.008159
S	627	D627D	gaT	gaC	14	14	AY.34	0.001358
S	627	D627H	Gat	Cat	14	14	P.1	0.000221
S	627	D627H	Gat	Cat	13	13	AY.41	0.003821
S	627	D627N	Gat	Aat	12	12	B.1.2	0.000106
S	627	D627N	Gat	Aat	12	12	B.1.617.2	0.000045
S	627	D627E	gaT	gaG	12	12	B.1.617.2	0.000045
S	627	D627del	GAT	---	11	11	All	0.000002
S	627	D627P	GAt	CCt	10	10	All	0.000002
S	627	D627T	GAt	ACt	10	10	All	0.000002
S	627	D627E	gaT	gaG	10	10	AY.3	0.000099
S	627	D627D	gaT	gaC	10	10	B.1.1.519	0.000397
S	627	D627Y	Gat	Tat	10	10	B.1.617.2	0.000038
S	627	D627D	gaT	gaC	10	10	P.1	0.000158
S	627	D627N	Gat	Aat	10	10	P.1	0.000158
S	627	D627Y	Gat	Tat	10	10	Q.1	0.001263
S	627	D627D	gaT	gaC	9	9	AY.43	0.00004
S	627	D627D	gaT	gaC	9	9	B.1.526	0.000212
S	627	D627T	GAt	ACt	8	8	AY.44	0.000049
S	627	D627D	gaT	gaC	8	8	AY.92	0.002298
S	627	D627D	gaT	gaC	8	8	B.1.621	0.000708
S	627	D627D	gaT	gaC	7	7	AY.102	0.000186
S	627	D627D	gaT	gaC	7	7	AY.3	0.00007
S	627	D627G	gAt	gGt	7	7	AY.4	0.000011
S	627	D627D	gaT	gaC	7	7	AY.54	0.000667
S	627	D627D	gaT	gaC	7	7	AY.98.1	0.000339
S	627	D627A	gAt	gCt	7	7	B.1.1.7	0.000006
S	627	D627G	gAt	gGt	7	7	B.1.177.60	0.001529
S	627	D627N	Gat	Aat	7	7	B.1.234	0.000924
S	627	D627D	gaT	gaC	7	7	C.23	0.040698
S	627	D627D	gaT	gaC	7	7	C.37	0.000812
S	627	D627N	Gat	Aat	6	6	B.1.620	0.005676
S	627	D627V	gAt	gTt	5	5	All	0.000001
S	627	D627A	gAt	gCt	5	5	AY.119	0.000177
S	627	D627E	gaT	gaG	5	5	AY.39.1	0.000198
S	627	D627Y	Gat	Tat	5	5	AY.92	0.001436
S	627	D627D	gaT	gaC	5	5	B.1.1	0.000091
S	627	D627H	Gat	Cat	4	4	AA.3	0.108108
S	627	D627H	Gat	Cat	4	4	AY.100	0.000184
S	627	D627A	gAt	gCt	4	4	AY.100	0.000184
S	627	D627D	gaT	gaC	4	4	AY.103	0.000025
S	627	D627Y	Gat	Tat	4	4	AY.103	0.000025
S	627	D627D	gaT	gaC	4	4	AY.118	0.000251
S	627	D627Y	Gat	Tat	4	4	AY.33	0.000267
S	627	D627D	gaT	gaC	4	4	AY.4.5	0.00043
S	627	D627D	gaT	gaC	4	4	AY.47	0.000124
S	627	D627D	gaT	gaC	4	4	AY.5	0.000083
S	627	D627N	Gat	Aat	4	4	B.1	0.000037
S	627	D627del	GAT	---	4	4	B.1.1.7	0.000004
S	627	D627E	gaT	gaG	4	4	B.1.1.7	0.000004
S	627	D627Y	Gat	Tat	4	4	P.1	0.000063
S	627	D627G	gAt	gGt	4	4	P.1.14	0.000191
S	627	D627Y	Gat	Tat	4	4	P.1.17	0.000647
S	627	D627D	gaT	gaC	4	4	R.1	0.00036
S	627	D627G	gAt	gGt	2	3		0.111111
S	627	D627G	gAT	gGA	1	3		0.055556
S	627	D627S	GAt	AGt	2	3	All	0
S	627	D627S	GAT	AGC	1	3	All	0
S	627	D627G	gAt	gGt	3	3	AY.103	0.000019
S	627	D627D	gaT	gaC	3	3	AY.120	0.000112
S	627	D627E	gaT	gaG	3	3	AY.25	0.000018
S	627	D627E	gaT	gaG	3	3	B.1	0.000027
S	627	D627G	gAt	gGt	3	3	B.1.1	0.000054
S	627	D627D	gaT	gaC	3	3	B.1.1.148	0.026316
S	627	D627E	gaT	gaG	3	3	B.1.1.222	0.000612
S	627	D627H	Gat	Cat	3	3	B.1.1.416	0.002715
S	627	D627Y	Gat	Tat	3	3	B.1.160	0.000094
S	627	D627N	Gat	Aat	3	3	B.1.221	0.000213
S	627	D627D	gaT	gaC	3	3	B.1.258	0.0002
S	627	D627G	gAt	gGt	3	3	B.1.351	0.000089
S	627	D627Y	Gat	Tat	3	3	B.1.433	0.009585
S	627	D627D	gaT	gaC	3	3	B.1.596	0.000261
S	627	D627A	gAt	gCt	3	3	B.1.617.2	0.000011
S	627	D627G	gAt	gGt	3	3	P.1	0.000047
S	627	D627Y	Gat	Tat	3	3	P.1.4	0.00293
S	627	D627N	Gat	Aat	2	2		0.111111
S	627	D627S	GAt	AGt	2	2		0.111111
S	627	D627G	gAt	gGt	2	2	AY.100	0.000092
S	627	D627Y	Gat	Tat	2	2	AY.102	0.000053
S	627	D627E	gaT	gaG	2	2	AY.103	0.000012
S	627	D627A	gAt	gCt	2	2	AY.106	0.00067
S	627	D627H	Gat	Cat	2	2	AY.119	0.000071
S	627	D627N	Gat	Aat	2	2	AY.119	0.000071
S	627	D627A	gAt	gCt	2	2	AY.121	0.000271
S	627	D627G	gAt	gGt	2	2	AY.20	0.000078
S	627	D627D	gaT	gaC	2	2	AY.23	0.000139
S	627	D627N	Gat	Aat	2	2	AY.3	0.00002
S	627	D627E	gaT	gaG	2	2	AY.3.1	0.000171
S	627	D627Y	Gat	Tat	2	2	AY.4.2	0.000043
S	627	D627N	Gat	Aat	2	2	AY.41	0.000588
S	627	D627A	gAt	gCt	2	2	AY.43	0.000009
S	627	D627A	gAt	gCt	2	2	AY.44	0.000012
S	627	D627G	gAt	gGt	2	2	AY.44	0.000012
S	627	D627Y	Gat	Tat	2	2	AY.44	0.000012
S	627	D627D	gaT	gaC	2	2	AY.46.5	0.000397
S	627	D627Y	Gat	Tat	2	2	AY.5	0.000041
S	627	D627Y	Gat	Tat	2	2	AY.54	0.000191
S	627	D627D	gaT	gaC	2	2	AY.9.2	0.000073
S	627	D627Y	Gat	Tat	2	2	AY.9.2	0.000073
S	627	D627Y	Gat	Tat	2	2	B.1	0.000018
S	627	D627G	gAt	gGt	2	2	B.1	0.000018
S	627	D627N	Gat	Aat	2	2	B.1.1.318	0.000604
S	627	D627P	GAt	CCt	2	2	B.1.1.7	0.000002
S	627	D627G	gAt	gGt	2	2	B.1.1.83	0.00542
S	627	D627D	gaT	gaC	2	2	B.1.160.17	0.003401
S	627	D627D	gaT	gaC	2	2	B.1.258.17	0.000208
S	627	D627D	gaT	gaC	2	2	B.1.351	0.000059
S	627	D627H	Gat	Cat	2	2	B.1.351	0.000059
S	627	D627D	gaT	gaC	2	2	B.1.389	0.002004
S	627	D627D	gaT	gaC	2	2	B.1.429	0.000047
S	627	D627D	gaT	gaC	2	2	B.1.468	0.011429
S	627	D627H	Gat	Cat	2	2	B.1.470	0.002809
S	627	D627H	Gat	Cat	2	2	C.36.3	0.001134
S	627	D627Y	Gat	Tat	2	2	D.2	0.00015
S	627	D627N	Gat	Aat	2	2	P.1.14	0.000096
S	627	D627D	gaT	gaC	2	2	Q.1	0.000253
S	627	D627R	GAT	AGA	1	1		0.055556
S	627	D627K	GaT	AaA	1	1		0.055556
S	627	D627E	gaT	gaA	1	1		0.055556
S	627	D627N	Gat	Aat	1	1	A.2.5.2	0.001572
S	627	D627D	gaT	gaC	1	1	A.23.1	0.000704
S	627	D627K	GaT	AaA	1	1	All	0
S	627	D627R	GAT	AGA	1	1	All	0
S	627	D627E	gaT	gaG	1	1	AY.1	0.000396
S	627	D627N	Gat	Aat	1	1	AY.100	0.000046
S	627	D627A	gAt	gCt	1	1	AY.102	0.000027
S	627	D627N	Gat	Aat	1	1	AY.102	0.000027
S	627	D627A	gAt	gCt	1	1	AY.103	0.000006
S	627	D627D	gaT	gaC	1	1	AY.106	0.000335
S	627	D627Y	Gat	Tat	1	1	AY.114	0.000231
S	627	D627A	gAt	gCt	1	1	AY.116	0.000287
S	627	D627E	gaT	gaG	1	1	AY.117	0.000085
S	627	D627Y	Gat	Tat	1	1	AY.117	0.000085
S	627	D627A	gAt	gCt	1	1	AY.117	0.000085
S	627	D627del	GAT	---	1	1	AY.118	0.000063
S	627	D627A	gAt	gCt	1	1	AY.118	0.000063
S	627	D627Y	Gat	Tat	1	1	AY.118	0.000063
S	627	D627Y	Gat	Tat	1	1	AY.119	0.000035
S	627	D627Y	Gat	Tat	1	1	AY.12	0.000316
S	627	D627Y	Gat	Tat	1	1	AY.120	0.000037
S	627	D627N	Gat	Aat	1	1	AY.120.1	0.000321
S	627	D627D	gaT	gaC	1	1	AY.120.2.1	0.000498
S	627	D627N	Gat	Aat	1	1	AY.121	0.000135
S	627	D627H	Gat	Cat	1	1	AY.14	0.000088
S	627	D627D	gaT	gaC	1	1	AY.18	0.010101
S	627	D627Y	Gat	Tat	1	1	AY.20	0.000039
S	627	D627D	gaT	gaC	1	1	AY.20	0.000039
S	627	D627A	gAt	gCt	1	1	AY.25	0.000006
S	627	D627H	Gat	Cat	1	1	AY.26	0.000028
S	627	D627D	gaT	gaC	1	1	AY.27	0.000065
S	627	D627Y	Gat	Tat	1	1	AY.29	0.000016
S	627	D627D	gaT	gaC	1	1	AY.29	0.000016
S	627	D627G	gAt	gGt	1	1	AY.3	0.00001
S	627	D627H	Gat	Cat	1	1	AY.3.1	0.000085
S	627	D627D	gaT	gaC	1	1	AY.30	0.000396
S	627	D627E	gaT	gaA	1	1	AY.33	0.000067
S	627	D627A	gAt	gCt	1	1	AY.36	0.000148
S	627	D627Y	Gat	Tat	1	1	AY.37	0.000316
S	627	D627del	GAT	---	1	1	AY.38	0.000499
S	627	D627N	Gat	Aat	1	1	AY.39	0.000025
S	627	D627A	gAt	gCt	1	1	AY.39	0.000025
S	627	D627D	gaT	gaC	1	1	AY.39.1	0.00004
S	627	D627A	gAt	gCt	1	1	AY.4.3	0.000842
S	627	D627D	gaT	gaC	1	1	AY.4.3	0.000842
S	627	D627Y	Gat	Tat	1	1	AY.42	0.00004
S	627	D627del	GAT	---	1	1	AY.43	0.000004
S	627	D627H	Gat	Cat	1	1	AY.43	0.000004
S	627	D627P	GAt	CCt	1	1	AY.43	0.000004
S	627	D627E	gaT	gaG	1	1	AY.43	0.000004
S	627	D627N	Gat	Aat	1	1	AY.45	0.000122
S	627	D627P	GAt	CCt	1	1	AY.46	0.000104
S	627	D627D	gaT	gaC	1	1	AY.46	0.000104
S	627	D627A	gAt	gCt	1	1	AY.55	0.000917
S	627	D627G	gAt	gGt	1	1	AY.59	0.00053
S	627	D627D	gaT	gaC	1	1	AY.6	0.000041
S	627	D627H	Gat	Cat	1	1	AY.6	0.000041
S	627	D627D	gaT	gaC	1	1	AY.61	0.000105
S	627	D627Y	Gat	Tat	1	1	AY.62	0.000436
S	627	D627D	gaT	gaC	1	1	AY.68	0.000274
S	627	D627N	Gat	Aat	1	1	AY.7	0.000196
S	627	D627Y	Gat	Tat	1	1	AY.7	0.000196
S	627	D627D	gaT	gaC	1	1	AY.7	0.000196
S	627	D627P	GAt	CCt	1	1	AY.70	0.000209
S	627	D627D	gaT	gaC	1	1	AY.74	0.000116
S	627	D627P	GAt	CCt	1	1	AY.75.1	0.00018
S	627	D627D	gaT	gaC	1	1	AY.75.1	0.00018
S	627	D627Y	Gat	Tat	1	1	AY.8	0.000606
S	627	D627Y	Gat	Tat	1	1	AY.84	0.000437
S	627	D627D	gaT	gaC	1	1	AY.9	0.000068
S	627	D627E	gaT	gaG	1	1	AY.9.2	0.000037
S	627	D627G	gAt	gGt	1	1	AY.94	0.000443
S	627	D627P	GAt	CCt	1	1	AY.96	0.002075
S	627	D627D	gaT	gaC	1	1	AY.98	0.000079
S	627	D627H	Gat	Cat	1	1	AY.98	0.000079
S	627	D627D	gaT	gaC	1	1	AY.99.2	0.000092
S	627	D627S	GAT	AGC	1	1	B	0.000128
S	627	D627P	GAt	CCt	1	1	B.1	0.000009
S	627	D627V	gAt	gTt	1	1	B.1	0.000009
S	627	D627N	Gat	Aat	1	1	B.1.1	0.000018
S	627	D627del	GAT	---	1	1	B.1.1	0.000018
S	627	D627Y	Gat	Tat	1	1	B.1.1	0.000018
S	627	D627E	gaT	gaA	1	1	B.1.1	0.000018
S	627	D627D	gaT	gaC	1	1	B.1.1.1	0.000327
S	627	D627D	gaT	gaC	1	1	B.1.1.191	0.004762
S	627	D627Y	Gat	Tat	1	1	B.1.1.216	0.00089
S	627	D627del	GAT	---	1	1	B.1.1.220	0.001859
S	627	D627D	gaT	gaC	1	1	B.1.1.230	0.009174
S	627	D627D	gaT	gaC	1	1	B.1.1.240	0.004695
S	627	D627D	gaT	gaC	1	1	B.1.1.261	0.008621
S	627	D627H	Gat	Cat	1	1	B.1.1.263	0.001558
S	627	D627D	gaT	gaC	1	1	B.1.1.28	0.000311
S	627	D627D	gaT	gaC	1	1	B.1.1.284	0.000107
S	627	D627D	gaT	gaC	1	1	B.1.1.294	0.001266
S	627	D627D	gaT	gaC	1	1	B.1.1.318	0.000302
S	627	D627D	gaT	gaC	1	1	B.1.1.348	0.000796
S	627	D627Y	Gat	Tat	1	1	B.1.1.376	0.005952
S	627	D627G	gAt	gGt	1	1	B.1.1.434	0.000349
S	627	D627D	gaT	gaC	1	1	B.1.1.45	0.014085
S	627	D627G	gAt	gGt	1	1	B.1.1.519	0.00004
S	627	D627V	gAt	gTt	1	1	B.1.1.519	0.00004
S	627	D627V	gAt	gTt	1	1	B.1.1.7	0.000001
S	627	D627A	gAt	gCt	1	1	B.1.108	0.005814
S	627	D627D	gaT	gaC	1	1	B.1.110.3	0.000718
S	627	D627D	gaT	gaC	1	1	B.1.146	0.004237
S	627	D627N	Gat	Aat	1	1	B.1.160	0.000031
S	627	D627D	gaT	gaC	1	1	B.1.160	0.000031
S	627	D627D	gaT	gaC	1	1	B.1.177.23	0.003236
S	627	D627Y	Gat	Tat	1	1	B.1.177.43	0.001477
S	627	D627E	gaT	gaA	1	1	B.1.177.72	0.00339
S	627	D627D	gaT	gaC	1	1	B.1.177.8	0.000752
S	627	D627D	gaT	gaC	1	1	B.1.177.81	0.000189
S	627	D627G	gAt	gGt	1	1	B.1.2	0.000009
S	627	D627H	Gat	Cat	1	1	B.1.2	0.000009
S	627	D627Y	Gat	Tat	1	1	B.1.2	0.000009
S	627	D627D	gaT	gaC	1	1	B.1.201	0.005682
S	627	D627E	gaT	gaG	1	1	B.1.221	0.000071
S	627	D627D	gaT	gaC	1	1	B.1.221	0.000071
S	627	D627N	Gat	Aat	1	1	B.1.243	0.00007
S	627	D627D	gaT	gaC	1	1	B.1.258.19	0.007092
S	627	D627D	gaT	gaC	1	1	B.1.258.3	0.001675
S	627	D627D	gaT	gaC	1	1	B.1.279	0.000514
S	627	D627Y	Gat	Tat	1	1	B.1.3	0.002618
S	627	D627D	gaT	gaC	1	1	B.1.311	0.000275
S	627	D627D	gaT	gaC	1	1	B.1.333	0.010526
S	627	D627P	GAt	CCt	1	1	B.1.351	0.00003
S	627	D627A	gAt	gCt	1	1	B.1.351	0.00003
S	627	D627A	gAt	gCt	1	1	B.1.351.2	0.000303
S	627	D627N	Gat	Aat	1	1	B.1.36.12	0.009615
S	627	D627N	Gat	Aat	1	1	B.1.377	0.004566
S	627	D627N	Gat	Aat	1	1	B.1.389	0.001002
S	627	D627N	Gat	Aat	1	1	B.1.396	0.000706
S	627	D627D	gaT	gaC	1	1	B.1.427	0.00005
S	627	D627N	Gat	Aat	1	1	B.1.429	0.000024
S	627	D627N	Gat	Aat	1	1	B.1.471	0.002732
S	627	D627T	GAt	ACt	1	1	B.1.525	0.000113
S	627	D627A	gAt	gCt	1	1	B.1.560	0.00463
S	627	D627D	gaT	gaC	1	1	B.1.580	0.004065
S	627	D627V	gAt	gTt	1	1	B.1.582	0.000491
S	627	D627V	gAt	gTt	1	1	B.1.596	0.000087
S	627	D627D	gaT	gaC	1	1	B.1.606	0.006024
S	627	D627D	gaT	gaC	1	1	B.1.610	0.003546
S	627	D627H	Gat	Cat	1	1	B.1.617.1	0.000129
S	627	D627H	Gat	Cat	1	1	B.1.617.2	0.000004
S	627	D627T	GAt	ACt	1	1	B.1.617.2	0.000004
S	627	D627N	Gat	Aat	1	1	B.1.619	0.000871
S	627	D627del	GAT	---	1	1	B.1.620	0.000946
S	627	D627H	Gat	Cat	1	1	B.1.621.1	0.000506
S	627	D627G	gAt	gGt	1	1	B.1.637	0.000073
S	627	D627D	gaT	gaC	1	1	B.1.9.5	0.005682
S	627	D627D	gaT	gaC	1	1	B.40	0.000364
S	627	D627P	GAt	CCt	1	1	B.6	0.00091
S	627	D627H	Gat	Cat	1	1	B.6	0.00091
S	627	D627H	Gat	Cat	1	1	C.37	0.000116
S	627	D627Y	Gat	Tat	1	1	C.37	0.000116
S	627	D627N	Gat	Aat	1	1	C.37	0.000116
S	627	D627Y	Gat	Tat	1	1	P.1.12	0.000484
S	627	D627D	gaT	gaC	1	1	P.1.14	0.000048
S	627	D627E	gaT	gaG	1	1	P.1.14	0.000048
S	627	D627Y	Gat	Tat	1	1	P.1.16	0.000374
S	627	D627D	gaT	gaC	1	1	P.1.8	0.004785
S	627	D627N	Gat	Aat	1	1	P.2	0.000187
S	627	D627G	gAt	gGt	1	1	P.2	0.000187
S	627	D627D	gaT	gaC	1	1	Q.8	0.000165
S	627	D627del	GAT	---	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.