CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 626 & Codon = gTa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S626A626VnonsyngCagTa493493123438-23440

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S626A626VgCagTa493493All0.000094
S626A626VgCagTa6363B.10.000577
S626A626VgCagTa5757B.1.1.70.000051
S626A626VgCagTa5252AY.40.000081
S626A626VgCagTa3131B.1.5880.028207
S626A626VgCagTa2525AD.20.005474
S626A626VgCagTa2222AY.4.20.000477
S626A626VgCagTa2121B.1.20.000185
S626A626VgCagTa1818B.1.1.4340.006274
S626A626VgCagTa1818B.1.617.20.000068
S626A626VgCagTa1717B.1.10.000308
S626A626VgCagTa1717B.1.1.2220.003468
S626A626VgCagTa1010AY.250.00006
S626A626VgCagTa1010AY.430.000044
S626A626VgCagTa88AY.290.000126
S626A626VgCagTa66AY.440.000037
S626A626VgCagTa66D.20.00045
S626A626VgCagTa55AY.1000.00023
S626A626VgCagTa55AY.1030.000031
S626A626VgCagTa55AY.30.00005
S626A626VgCagTa55B.1.1.270.028249
S626A626VgCagTa55C.370.00058
S626A626VgCagTa44AY.470.000124
S626A626VgCagTa44P.10.000063
S626A626VgCagTa33AY.1170.000254
S626A626VgCagTa33AY.390.000074
S626A626VgCagTa33B0.000383
S626A626VgCagTa33B.1.1.280.000934
S626A626VgCagTa33B.1.1.3180.000905
S626A626VgCagTa33B.1.36.360.001806
S626A626VgCagTa33B.1.6270.006061
S626A626VgCagTa22AY.1020.000053
S626A626VgCagTa22B.1.1.4290.009217
S626A626VgCagTa22B.1.1770.000026
S626A626VgCagTa22B.1.3190.006098
S626A626VgCagTa22B.1.4290.000047
S626A626VgCagTa22B.1.4970.00063
S626A626VgCagTa22B.1.5950.000522
S626A626VgCagTa22B.1.6210.000177
S626A626VgCagTa11A.2.50.000499
S626A626VgCagTa11A.30.002096
S626A626VgCagTa11AY.10.000396
S626A626VgCagTa11AY.1080.001103
S626A626VgCagTa11AY.1090.00074
S626A626VgCagTa11AY.1210.000135
S626A626VgCagTa11AY.260.000028
S626A626VgCagTa11AY.3.10.000085
S626A626VgCagTa11AY.330.000067
S626A626VgCagTa11AY.4.50.000107
S626A626VgCagTa11AY.46.60.000072
S626A626VgCagTa11AY.50.000021
S626A626VgCagTa11AY.530.000288
S626A626VgCagTa11AY.950.000761
S626A626VgCagTa11AY.980.000079
S626A626VgCagTa11AY.99.20.000092
S626A626VgCagTa11B.1.1.250.000569
S626A626VgCagTa11B.1.1.2840.000107
S626A626VgCagTa11B.1.1.3150.008475
S626A626VgCagTa11B.1.1.3260.001761
S626A626VgCagTa11B.1.1.370.000193
S626A626VgCagTa11B.1.1.4320.001266
S626A626VgCagTa11B.1.1.5190.00004
S626A626VgCagTa11B.1.177.40.000211
S626A626VgCagTa11B.1.177.560.000668
S626A626VgCagTa11B.1.177.730.000566
S626A626VgCagTa11B.1.2060.000816
S626A626VgCagTa11B.1.2430.00007
S626A626VgCagTa11B.1.2580.000067
S626A626VgCagTa11B.1.3510.00003
S626A626VgCagTa11B.1.36.70.004
S626A626VgCagTa11B.1.4700.001404
S626A626VgCagTa11B.1.5260.000024
S626A626VgCagTa11B.1.5350.028571
S626A626VgCagTa11B.1.619.10.000641
S626A626VgCagTa11B.100.008264
S626A626VgCagTa11C.360.000911
S626A626VgCagTa11P.1.140.000048
S626A626VgCagTa11P.1.170.000162
S626A626VgCagTa11P.20.000187
S626A626VgCagTa11Q.30.000145
S626A626VgCagTa11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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