CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 626 & Codon = Tca

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S626A626SnonsynGcaTca259125900.99961423438-23440

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S626A626SGcaTca25902591All0.000495
S626A626SGcaTca10361036B.1.1.2770.786039
S626A626SGcaTca254254B.1.1.70.000227
S626A626SGcaTca162162K.31
S626A626SGcaTca146146B.1.617.20.00055
S626A626SGcaTca124124B.1.4990.130252
S626A626SGcaTca121121AY.430.000536
S626A626SGcaTca9999AY.40.000154
S626A626SGcaTca8383B.1.2210.005896
S626A626SGcaTca4848B.1.20.000423
S626A626SGcaTca4242B.1.1770.000553
S626A626SGcaTca3333AY.90.002231
S626A626SGcaTca3232AY.99.20.002949
S626A626SGcaTca3030AY.1030.000186
S626A626SGcaTca2929AY.98.10.001404
S626A626SGcaTca2929P.20.005412
S626A626SGcaTca1919P.10.000299
S626A626SGcaTca1818AY.440.00011
S626A626SGcaTca1717B.10.000156
S626A626SGcaTca1616B.1.10.00029
S626A626SGcaTca1515AY.250.00009
S626A626SGcaTca1212B.1.1.470.064171
S626A626SGcaTca1010AY.160.003797
S626A626SGcaTca1010AY.200.000389
S626A626SGcaTca1010B.1.3610.012887
S626A626SGcaTca99P.1.10.002859
S626A626SGcaTca88B.1.1600.00025
S626A626SGcaTca88C.370.000929
S626A626SGcaTca77B.1.1.5190.000278
S626A626SGcaTca77B.1.5250.000792
S626A626SGcaTca66AY.290.000095
S626A626SGcaTca66AY.390.000148
S626A626SGcaTca66B.1.1.2940.007595
S626A626SGcaTca66B.1.438.10.000644
S626A626SGcaTca66B.1.499.10.666667
S626A626SGcaTca66B.1.6090.002876
S626A626SGcaTca55B.1.1.2980.00431
S626A626SGcaTca55B.1.3510.000149
S626A626SGcaTca44AY.120.2.10.001993
S626A626SGcaTca44AY.140.000352
S626A626SGcaTca44AY.330.000267
S626A626SGcaTca44AY.9.20.000147
S626A626SGcaTca44K.10.095238
S626A626SGcaTca230.111111
S626A626SGcaTca33AY.1190.000106
S626A626SGcaTca33AY.230.000209
S626A626SGcaTca33B.1.1.2220.000612
S626A626SGcaTca33B.1.5170.001281
S626A626SGcaTca22AY.1020.000053
S626A626SGcaTca22AY.1130.000285
S626A626SGcaTca22AY.1160.000574
S626A626SGcaTca22AY.1200.000074
S626A626SGcaTca22AY.1210.000271
S626A626SGcaTca22AY.60.000082
S626A626SGcaTca22AY.640.00119
S626A626SGcaTca22AY.770.002255
S626A626SGcaTca22B0.000256
S626A626SGcaTca22B.1.1.2140.000111
S626A626SGcaTca22B.1.4290.000047
S626A626SGcaTca22P.1.100.000539
S626A626SGcaTca22Q.30.00029
S626A626SGcaTca11A0.000387
S626A626SGcaTca11AY.1140.000231
S626A626SGcaTca11AY.130.000161
S626A626SGcaTca11AY.270.000065
S626A626SGcaTca11AY.30.00001
S626A626SGcaTca11AY.34.10.00051
S626A626SGcaTca11AY.39.10.00004
S626A626SGcaTca11AY.460.000104
S626A626SGcaTca11AY.5.30.000337
S626A626SGcaTca11AY.520.000814
S626A626SGcaTca11AY.550.000917
S626A626SGcaTca11AY.610.000105
S626A626SGcaTca11AY.620.000436
S626A626SGcaTca11AY.650.000533
S626A626SGcaTca11AY.690.000187
S626A626SGcaTca11AY.810.001992
S626A626SGcaTca11AY.860.00083
S626A626SGcaTca11AY.880.000884
S626A626SGcaTca11AZ.10.000867
S626A626SGcaTca11B.1.1.1340.011364
S626A626SGcaTca11B.1.1.3170.000412
S626A626SGcaTca11B.1.1.500.000679
S626A626SGcaTca11B.1.1.520.012195
S626A626SGcaTca11B.1.1.5210.005348
S626A626SGcaTca11B.1.1.700.000341
S626A626SGcaTca11B.1.177.570.000281
S626A626SGcaTca11B.1.2230.002778
S626A626SGcaTca11B.1.2650.001271
S626A626SGcaTca11B.1.2770.02381
S626A626SGcaTca11B.1.3380.008621
S626A626SGcaTca11B.1.3480.018182
S626A626SGcaTca11B.1.3490.000715
S626A626SGcaTca11B.1.360.000146
S626A626SGcaTca11B.1.36.370.002778
S626A626SGcaTca11B.1.36.80.001
S626A626SGcaTca11B.1.3670.000792
S626A626SGcaTca11B.1.4410.009615
S626A626SGcaTca11B.1.4980.020408
S626A626SGcaTca11B.1.5610.000397
S626A626SGcaTca11B.1.5770.000687
S626A626SGcaTca11B.1.617.10.000129
S626A626SGcaTca11B.1.6310.003367
S626A626SGcaTca11B.1.6370.000073
S626A626SGcaTca11B.1.840.020833
S626A626SGcaTca11B.1.930.000934
S626A626SGcaTca11B.310.003731
S626A626SGcaTca11B.4.50.011905
S626A626SGcaTca11D.20.000075
S626A626SGcaTca11N.50.001767
S626A626SGcaTca11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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