CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 622 & Codon = gtA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S622V622VsyngtTgtA3321840.55421723426-23428

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S622V622VgtTgtA184332All0.000035
S622V622VgtTgtA99101B.1.1600.003088
S622V622VgtTgtA3436B.1.1770.000448
S622V622VgtTgtA2929AY.360.004298
S622V622VgtTgtA118B.1.617.20.000004
S622V622VgtTgtA412AY.40.000006
S622V622VgtTgtA26AY.250.000012
S622V622VgtTgtA36C.370.000348
S622V622VgtTgtA23AY.440.000012
S622V622VgtTgtA13P.10.000016
S622V622VgtTgtA22A.2.50.000998
S622V622VgtTgtA11AY.390.000025
S622V622VgtTgtA11AY.60.000041
S622V622VgtTgtA11AY.730.000665
S622V622VgtTgtA11B.1.160.150.00495
S622V622VgtTgtA11B.1.177.30.007634
S622V622VgtTgtA11B.1.177.560.000668
S622V622VgtTgtA11B.1.36.180.00042

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.