CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 622 & Codon = gCt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S622V622AnonsyngTtgCt569569123426-23428

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S622V622AgTtgCt569569All0.000109
S622V622AgTtgCt180180AY.480.083721
S622V622AgTtgCt9797B.1.1.70.000087
S622V622AgTtgCt4848AY.40.000075
S622V622AgTtgCt4848B.1.160.210.979592
S622V622AgTtgCt1818AY.1030.000112
S622V622AgTtgCt1717AY.250.000102
S622V622AgTtgCt1515AY.430.000066
S622V622AgTtgCt1111B.1.1.5190.000437
S622V622AgTtgCt99B.1.617.20.000034
S622V622AgTtgCt88A.10.002255
S622V622AgTtgCt77B.1.2430.000487
S622V622AgTtgCt66AY.260.00017
S622V622AgTtgCt66B.1.20.000053
S622V622AgTtgCt55AY.440.00003
S622V622AgTtgCt44AY.30.00004
S622V622AgTtgCt44B.10.000037
S622V622AgTtgCt44P.1.40.003906
S622V622AgTtgCt33AY.320.001597
S622V622AgTtgCt33AY.39.10.000119
S622V622AgTtgCt33B.1.10.000054
S622V622AgTtgCt33P.10.000047
S622V622AgTtgCt33P.1.130.002695
S622V622AgTtgCt22AY.200.000078
S622V622AgTtgCt22AY.230.000139
S622V622AgTtgCt22AY.29.10.000441
S622V622AgTtgCt22AY.350.000466
S622V622AgTtgCt22AY.370.000632
S622V622AgTtgCt22AY.46.60.000144
S622V622AgTtgCt22AY.5.40.000553
S622V622AgTtgCt22AY.75.10.000361
S622V622AgTtgCt22B.1.1.2220.000408
S622V622AgTtgCt22B.1.2580.000133
S622V622AgTtgCt22B.1.3430.041667
S622V622AgTtgCt22B.1.5700.005882
S622V622AgTtgCt22C.290.125
S622V622AgTtgCt11A.23.10.000704
S622V622AgTtgCt11AY.1000.000046
S622V622AgTtgCt11AY.1140.000231
S622V622AgTtgCt11AY.1160.000287
S622V622AgTtgCt11AY.1170.000085
S622V622AgTtgCt11AY.1180.000063
S622V622AgTtgCt11AY.1200.000037
S622V622AgTtgCt11AY.190.00114
S622V622AgTtgCt11AY.23.10.000417
S622V622AgTtgCt11AY.390.000025
S622V622AgTtgCt11AY.4.20.000022
S622V622AgTtgCt11AY.420.00004
S622V622AgTtgCt11AY.470.000031
S622V622AgTtgCt11AY.550.000917
S622V622AgTtgCt11AY.610.000105
S622V622AgTtgCt11AY.7.10.000113
S622V622AgTtgCt11AY.710.000475
S622V622AgTtgCt11AY.750.000056
S622V622AgTtgCt11AY.90.000068
S622V622AgTtgCt11AY.920.000287
S622V622AgTtgCt11AY.930.000273
S622V622AgTtgCt11AY.98.10.000048
S622V622AgTtgCt11B.1.1260.001276
S622V622AgTtgCt11B.1.1310.008772
S622V622AgTtgCt11B.1.160.160.000929
S622V622AgTtgCt11B.1.1770.000013
S622V622AgTtgCt11B.1.177.160.000664
S622V622AgTtgCt11B.1.177.170.000821
S622V622AgTtgCt11B.1.2220.001692
S622V622AgTtgCt11B.1.258.170.000104
S622V622AgTtgCt11B.1.3510.00003
S622V622AgTtgCt11B.1.360.000146
S622V622AgTtgCt11B.1.36.160.001425
S622V622AgTtgCt11B.1.36.170.000494
S622V622AgTtgCt11B.1.5240.001406
S622V622AgTtgCt11B.1.617.10.000129
S622V622AgTtgCt11B.1.6370.000073
S622V622AgTtgCt11C.180.002591
S622V622AgTtgCt11C.370.000116
S622V622AgTtgCt11N.40.004255
S622V622AgTtgCt11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.