CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 622

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S622V622FnonsynGttTtt833183300.9998823426-23428
S622V622FnonsynGtTTtC833110.00012003423426-23428
S622V622InonsynGttAtt997997123426-23428
S622V622AnonsyngTtgCt569569123426-23428
S622V622VsyngtTgtA3321840.55421723426-23428
S622V622VsyngtTgtC3321330.40060223426-23428
S622V622VsyngtTgtG332150.045180723426-23428
S622V622LnonsynGttCtt2482450.98790323426-23428
S622V622LnonsynGtTTtA24820.0080645223426-23428
S622V622LnonsynGtTCtC24810.0040322623426-23428
S622V622deldelGTT---2626123426-23428
S622V622GnonsyngTtgGt1414123426-23428
S622V622del1delGtt-tt420.523426-23428
S622V622del1delgTtg-t420.523426-23428
S622V622DnonsyngTtgAt320.66666723426-23428
S622V622DnonsyngTTgAC310.33333323426-23428
S622V622del2delgTTg--22123426-23428
S622V622HnonsynGTtCAt210.523426-23428
S622V622YnonsynGTTTAC210.523426-23428
S622V622YnonsynGTtTAt210.523426-23428
S622V622HnonsynGTTCAC210.523426-23428

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S622V622FGttTtt83308331All0.001593
S622V622FGtTTtC18331All0
S622V622FGttTtt43814381B.1.1.70.003922
S622V622IGttAtt997997All0.000191
S622V622AgTtgCt569569All0.000109
S622V622FGttTtt466466B.1.617.20.001755
S622V622FGttTtt461461B.1.1.370.08891
S622V622FGttTtt440440AY.40.000685
S622V622VgtTgtA184332All0.000035
S622V622VgtTgtC133332All0.000025
S622V622VgtTgtG15332All0.000003
S622V622IGttAtt292292B.1.10.005297
S622V622LGttCtt245248All0.000047
S622V622LGtTTtA2248All0
S622V622LGtTCtC1248All0
S622V622AgTtgCt180180AY.480.083721
S622V622FGttTtt171171AY.290.002697
S622V622FGttTtt167167AY.440.001016
S622V622FGttTtt145145AY.430.000642
S622V622FGttTtt145145AY.930.039596
S622V622FGttTtt133133B.1.20.001171
S622V622LGttCtt118118B.1.1.70.000106
S622V622VgtTgtA99101B.1.1600.003088
S622V622VgtTgtG1101B.1.1600.000031
S622V622VgtTgtC1101B.1.1600.000031
S622V622FGttTtt9898AY.1030.000608
S622V622AgTtgCt9797B.1.1.70.000087
S622V622FGttTtt9393AY.250.000559
S622V622IGttAtt8080B.1.617.20.000301
S622V622IGttAtt7373B.1.177.810.013821
S622V622FGttTtt6464AY.260.001812
S622V622FGttTtt6464AY.46.60.004621
S622V622FGttTtt6363B.1.3510.001873
S622V622FGttTtt6262B.1.1.10.020255
S622V622FGttTtt5858B.10.000531
S622V622IGttAtt5757B.1.1.70.000051
S622V622IGttAtt5656AY.40.000087
S622V622FGttTtt5050B.1.4290.001176
S622V622IGttAtt4949AY.390.001211
S622V622FGttTtt4848AY.30.000477
S622V622AgTtgCt4848AY.40.000075
S622V622AgTtgCt4848B.1.160.210.979592
S622V622FGttTtt4747AY.390.001161
S622V622FGttTtt4747B.1.10.000853
S622V622FGttTtt4545B.1.1770.000593
S622V622IGttAtt4141P.10.000646
S622V622FGttTtt3636AY.1170.003043
S622V622VgtTgtA3436B.1.1770.000448
S622V622VgtTgtC236B.1.1770.000026
S622V622IGttAtt3535AY.440.000213
S622V622FGttTtt3434AY.170.278689
S622V622FGttTtt3333AY.460.003435
S622V622FGttTtt3232B.1.3910.036077
S622V622IGttAtt2929AY.1160.008317
S622V622VgtTgtA2929AY.360.004298
S622V622FGttTtt2929B.1.360.004231
S622V622FGttTtt2828AY.420.001126
S622V622FGttTtt2828B.1.1.500.019009
S622V622delGTT---2626All0.000005
S622V622FGttTtt2626B.1.5260.000611
S622V622FGttTtt2626P.10.00041
S622V622FGttTtt2525AY.470.000778
S622V622FGttTtt2525AY.50.000516
S622V622IGttAtt2525AY.700.005213
S622V622FGttTtt2424A.210.066482
S622V622FGttTtt2323AY.1020.00061
S622V622IGttAtt2323AY.30.000229
S622V622FGttTtt2323B.1.2430.0016
S622V622FGttTtt2222AY.200.000855
S622V622FGttTtt2222AY.980.001738
S622V622IGttAtt2020AY.1030.000124
S622V622LGttCtt1919B.1.4270.000959
S622V622AgTtgCt1818AY.1030.000112
S622V622IGttAtt1818B.1.177.210.001376
S622V622IGttAtt1818B.1.3750.014754
S622V622VgtTgtC1718B.1.617.20.000064
S622V622VgtTgtA118B.1.617.20.000004
S622V622AgTtgCt1717AY.250.000102
S622V622FGttTtt1717AY.330.001135
S622V622FGttTtt1616AY.180.161616
S622V622IGttAtt1616B.10.000147
S622V622FGttTtt1616B.1.1.5190.000635
S622V622AgTtgCt1515AY.430.000066
S622V622FGttTtt1515B.1.1.2620.227273
S622V622GgTtgGt1414All0.000003
S622V622IGttAtt1414AY.200.000544
S622V622FGttTtt1414AY.39.10.000555
S622V622VgtTgtC1414AY.430.000062
S622V622IGttAtt1414AY.430.000062
S622V622FGttTtt1414P.1.40.013672
S622V622LGttCtt1313AY.40.00002
S622V622IGttAtt1313AY.980.001027
S622V622LGttCtt1313B.1.4290.000306
S622V622VgtTgtC712AY.40.000011
S622V622VgtTgtA412AY.40.000006
S622V622VgtTgtG112AY.40.000002
S622V622VgtTgtC1112B.1.1.70.00001
S622V622VgtTgtG112B.1.1.70.000001
S622V622AgTtgCt1111B.1.1.5190.000437
S622V622VgtTgtC1111B.1.5250.001245
S622V622IGttAtt1010AY.250.00006
S622V622FGttTtt1010AY.4.20.000217
S622V622LGttCtt1010AY.440.000061
S622V622FGttTtt1010AY.900.006845
S622V622FGttTtt1010B.1.177.730.005663
S622V622FGttTtt1010B.1.2580.000665
S622V622FGttTtt1010B.1.258.170.00104
S622V622FGttTtt1010B.1.3850.106383
S622V622FGttTtt99AY.99.20.000829
S622V622LGttCtt99B.10.000082
S622V622FGttTtt99B.1.1.3070.022785
S622V622VgtTgtC99B.1.1.3170.003705
S622V622FGttTtt99B.1.3980.026786
S622V622AgTtgCt99B.1.617.20.000034
S622V622AgTtgCt88A.10.002255
S622V622IGttAtt88AY.1000.000368
S622V622FGttTtt88AY.1000.000368
S622V622FGttTtt88AY.1180.000501
S622V622IGttAtt88B.1.1770.000105
S622V622IGttAtt88B.1.20.00007
S622V622VgtTgtG88B.1.2430.000557
S622V622FGttTtt88B.1.3490.005718
S622V622FGttTtt88B.1.3690.002282
S622V622FGttTtt88B.1.6280.002819
S622V622FGttTtt88R.10.00072
S622V622FGttTtt77AY.1190.000247
S622V622FGttTtt77AY.230.000488
S622V622FGttTtt77AZ.40.02349
S622V622IGttAtt77B.1.1.2250.05036
S622V622FGttTtt77B.1.1.3060.003069
S622V622delGTT---77B.1.1.70.000006
S622V622VgtTgtC77B.1.20.000062
S622V622AgTtgCt77B.1.2430.000487
S622V622FGttTtt66AY.1060.002009
S622V622VgtTgtC46AY.250.000024
S622V622VgtTgtA26AY.250.000012
S622V622AgTtgCt66AY.260.00017
S622V622FGttTtt66AY.340.000582
S622V622GgTtgGt66AY.4.20.00013
S622V622FGttTtt66AY.4.50.000645
S622V622FGttTtt66AY.450.00073
S622V622VgtTgtC56B.1.10.000091
S622V622VgtTgtG16B.1.10.000018
S622V622FGttTtt66B.1.1.3520.1875
S622V622LGttCtt66B.1.177.460.00551
S622V622AgTtgCt66B.1.20.000053
S622V622FGttTtt66B.1.3710.006734
S622V622FGttTtt66B.1.4270.000303
S622V622FGttTtt66B.1.5960.000523
S622V622IGttAtt66B.40.013245
S622V622VgtTgtA36C.370.000348
S622V622VgtTgtC36C.370.000348
S622V622FGttTtt55AY.1200.000186
S622V622AgTtgCt55AY.440.00003
S622V622FGttTtt55B0.000639
S622V622FGttTtt55B.1.1.2220.00102
S622V622FGttTtt55B.1.1.3250.128205
S622V622FGttTtt55B.1.1.390.002548
S622V622FGttTtt55B.1.177.520.008787
S622V622LGttCtt55B.1.3350.051546
S622V622FGttTtt55B.1.4060.030303
S622V622FGttTtt55B.1.5880.00455
S622V622FGttTtt55B.1.5900.022727
S622V622FGttTtt55B.1.5950.001305
S622V622LGttCtt55B.1.617.20.000019
S622V622FGttTtt44A.2.5.30.041237
S622V622del1Gtt-tt24All0
S622V622del1gTtg-t24All0
S622V622VgtTgtC44AY.1030.000025
S622V622FGttTtt44AY.120.2.10.001993
S622V622FGttTtt44AY.29.10.000882
S622V622AgTtgCt44AY.30.00004
S622V622FGttTtt44AY.350.000932
S622V622FGttTtt44AY.370.001264
S622V622FGttTtt44AY.590.002119
S622V622IGttAtt44AY.590.002119
S622V622FGttTtt44AY.680.001095
S622V622FGttTtt44AY.98.10.000194
S622V622AgTtgCt44B.10.000037
S622V622VgtTgtC44B.10.000037
S622V622FGttTtt44B.1.1.270.022599
S622V622FGttTtt44B.1.1.50.033333
S622V622FGttTtt44B.1.1600.000125
S622V622IGttAtt44B.1.1600.000125
S622V622FGttTtt44B.1.3670.00317
S622V622FGttTtt44B.1.4090.003125
S622V622FGttTtt44B.1.4690.01444
S622V622FGttTtt44B.1.5580.018265
S622V622LGttCtt44P.1.140.000191
S622V622VgtTgtC44P.1.140.000191
S622V622AgTtgCt44P.1.40.003906
S622V622FGttTtt44P.1.70.001277
S622V622FGttTtt44Q.80.00066
S622V622FGttTtt230.111111
S622V622FGtTTtC130.055556
S622V622FGttTtt33A0.001161
S622V622DgTtgAt23All0
S622V622DgTTgAC13All0
S622V622FGttTtt33AY.1140.000693
S622V622IGttAtt33AY.1150.015625
S622V622FGttTtt33AY.16.10.00141
S622V622LGttCtt33AY.230.000209
S622V622IGttAtt33AY.260.000085
S622V622FGttTtt33AY.270.000194
S622V622FGttTtt33AY.280.005671
S622V622IGttAtt33AY.290.000047
S622V622AgTtgCt33AY.320.001597
S622V622AgTtgCt33AY.39.10.000119
S622V622delGTT---33AY.40.000005
S622V622LGttCtt33AY.430.000013
S622V622VgtTgtA23AY.440.000012
S622V622VgtTgtC13AY.440.000006
S622V622FGttTtt33AY.46.20.001906
S622V622FGttTtt33AY.46.40.000494
S622V622FGttTtt33AY.610.000314
S622V622FGttTtt33AY.750.000168
S622V622AgTtgCt33B.1.10.000054
S622V622IGttAtt33B.1.1.1330.025424
S622V622IGttAtt33B.1.1.2840.000322
S622V622FGttTtt33B.1.1.3180.000905
S622V622FGttTtt33B.1.1.3480.002389
S622V622LGttCtt33B.1.20.000026
S622V622LGttCtt33B.1.2410.002435
S622V622VgtTgtC33B.1.4290.000071
S622V622FGttTtt33B.1.438.10.000322
S622V622LGttCtt33B.1.466.20.001174
S622V622FGttTtt33B.1.5250.000339
S622V622FGttTtt33B.1.6090.001438
S622V622FGttTtt33B.1.6190.002613
S622V622FGttTtt33B.1.6210.000266
S622V622AgTtgCt33P.10.000047
S622V622VgtTgtA13P.10.000016
S622V622VgtTgtG13P.10.000016
S622V622VgtTgtC13P.10.000016
S622V622AgTtgCt33P.1.130.002695
S622V622VgtTgtC33P.1.70.000958
S622V622FGttTtt33P.20.00056
S622V622DgTTgAC120.055556
S622V622HGTtCAt120.055556
S622V622LGttCtt120.055556
S622V622LGtTCtC120.055556
S622V622YGTtTAt120.055556
S622V622YGTTTAC120.055556
S622V622DgTtgAt120.055556
S622V622HGTTCAC120.055556
S622V622VgtTgtA22A.2.50.000998
S622V622del2gTTg--22All0
S622V622HGTtCAt12All0
S622V622YGTTTAC12All0
S622V622HGTTCAC12All0
S622V622YGTtTAt12All0
S622V622IGttAtt22AY.1020.000053
S622V622VgtTgtC22AY.1070.000932
S622V622IGttAtt22AY.1080.002205
S622V622FGttTtt22AY.1130.000285
S622V622LGttCtt22AY.1190.000071
S622V622IGttAtt22AY.1200.000074
S622V622VgtTgtC22AY.1210.000271
S622V622AgTtgCt22AY.200.000078
S622V622FGttTtt22AY.210.003795
S622V622AgTtgCt22AY.230.000139
S622V622IGttAtt22AY.240.000862
S622V622IGttAtt22AY.270.000129
S622V622AgTtgCt22AY.29.10.000441
S622V622FGttTtt22AY.320.001065
S622V622FGttTtt22AY.34.10.00102
S622V622AgTtgCt22AY.350.000466
S622V622AgTtgCt22AY.370.000632
S622V622VgtTgtC22AY.4.20.000043
S622V622FGttTtt22AY.400.001929
S622V622IGttAtt22AY.420.00008
S622V622delGTT---22AY.430.000009
S622V622AgTtgCt22AY.46.60.000144
S622V622FGttTtt22AY.5.40.000553
S622V622AgTtgCt22AY.5.40.000553
S622V622FGttTtt22AY.510.001818
S622V622FGttTtt22AY.530.000575
S622V622FGttTtt22AY.540.000191
S622V622FGttTtt22AY.7.10.000225
S622V622FGttTtt22AY.740.000231
S622V622AgTtgCt22AY.75.10.000361
S622V622FGttTtt22AY.9.20.000073
S622V622LGttCtt22B0.000256
S622V622del1Gtt-tt22B.10.000018
S622V622delGTT---22B.10.000018
S622V622LGttCtt22B.1.10.000036
S622V622IGttAtt22B.1.1.1740.006757
S622V622GgTtgGt22B.1.1.2140.000111
S622V622AgTtgCt22B.1.1.2220.000408
S622V622FGttTtt22B.1.1.280.000622
S622V622FGttTtt22B.1.1.340.026316
S622V622FGttTtt22B.1.1.3640.133333
S622V622FGttTtt22B.1.1.3980.006452
S622V622delGTT---22B.1.1.4340.000697
S622V622IGttAtt22B.1.1.5190.000079
S622V622IGttAtt22B.1.1.5250.010929
S622V622LGttCtt22B.1.110.30.001437
S622V622FGttTtt22B.1.1690.029851
S622V622LGtTTtA22B.1.1770.000026
S622V622FGttTtt22B.1.177.100.001756
S622V622LGttCtt22B.1.177.500.00939
S622V622FGttTtt22B.1.177.570.000562
S622V622FGttTtt22B.1.177.600.000437
S622V622FGttTtt22B.1.177.810.000379
S622V622IGttAtt22B.1.177.820.000955
S622V622LGttCtt22B.1.2210.000142
S622V622FGttTtt22B.1.2210.000142
S622V622AgTtgCt22B.1.2580.000133
S622V622AgTtgCt22B.1.3430.041667
S622V622FGttTtt22B.1.351.20.000605
S622V622FGttTtt22B.1.3990.003868
S622V622FGttTtt22B.1.4200.020833
S622V622FGttTtt22B.1.4250.005988
S622V622IGttAtt22B.1.4290.000047
S622V622FGttTtt22B.1.4560.006536
S622V622FGttTtt22B.1.5470.04878
S622V622AgTtgCt22B.1.5700.005882
S622V622FGttTtt22B.1.617.10.000258
S622V622LGttCtt22B.1.6370.000146
S622V622FGttTtt22B.110.010256
S622V622AgTtgCt22C.290.125
S622V622FGttTtt22C.300.003454
S622V622FGttTtt22C.360.001821
S622V622FGttTtt22P.1.140.000096
S622V622FGttTtt22P.30.00319
S622V622FGttTtt22Q.10.000253
S622V622GgTtgGt110.055556
S622V622VgtTgtC110.055556
S622V622FGttTtt11A.20.000662
S622V622IGttAtt11A.2.5.20.001572
S622V622AgTtgCt11A.23.10.000704
S622V622FGttTtt11AD.20.000219
S622V622FGttTtt11AE.10.011364
S622V622VgtTgtG11AY.10.000396
S622V622IGttAtt11AY.100.00053
S622V622VgtTgtC11AY.1000.000046
S622V622AgTtgCt11AY.1000.000046
S622V622VgtTgtC11AY.1020.000027
S622V622LGttCtt11AY.1030.000006
S622V622IGttAtt11AY.1050.000643
S622V622FGttTtt11AY.1050.000643
S622V622FGttTtt11AY.1090.00074
S622V622FGttTtt11AY.1100.000113
S622V622AgTtgCt11AY.1140.000231
S622V622FGttTtt11AY.1160.000287
S622V622AgTtgCt11AY.1160.000287
S622V622AgTtgCt11AY.1170.000085
S622V622AgTtgCt11AY.1180.000063
S622V622AgTtgCt11AY.1200.000037
S622V622delGTT---11AY.160.00038
S622V622IGttAtt11AY.160.00038
S622V622FGttTtt11AY.160.00038
S622V622AgTtgCt11AY.190.00114
S622V622FGttTtt11AY.20.000356
S622V622AgTtgCt11AY.23.10.000417
S622V622LGttCtt11AY.250.000006
S622V622VgtTgtC11AY.290.000016
S622V622VgtTgtC11AY.30.00001
S622V622FGttTtt11AY.3.10.000085
S622V622FGttTtt11AY.300.000396
S622V622IGttAtt11AY.300.000396
S622V622IGttAtt11AY.350.000233
S622V622delGTT---11AY.380.000499
S622V622VgtTgtC11AY.380.000499
S622V622FGttTtt11AY.380.000499
S622V622AgTtgCt11AY.390.000025
S622V622VgtTgtA11AY.390.000025
S622V622delGTT---11AY.39.10.00004
S622V622GgTtgGt11AY.40.000002
S622V622delGTT---11AY.4.20.000022
S622V622AgTtgCt11AY.4.20.000022
S622V622LGttCtt11AY.4.20.000022
S622V622FGttTtt11AY.4.2.10.000149
S622V622IGttAtt11AY.4.50.000107
S622V622FGttTtt11AY.410.000294
S622V622AgTtgCt11AY.420.00004
S622V622IGttAtt11AY.450.000122
S622V622VgtTgtC11AY.460.000104
S622V622VgtTgtC11AY.46.40.000165
S622V622FGttTtt11AY.46.50.000198
S622V622AgTtgCt11AY.470.000031
S622V622FGttTtt11AY.480.000465
S622V622IGttAtt11AY.50.000021
S622V622GgTtgGt11AY.50.000021
S622V622VgtTgtC11AY.50.000021
S622V622LGttCtt11AY.5.40.000277
S622V622AgTtgCt11AY.550.000917
S622V622FGttTtt11AY.550.000917
S622V622IGttAtt11AY.570.000656
S622V622VgtTgtA11AY.60.000041
S622V622AgTtgCt11AY.610.000105
S622V622FGttTtt11AY.640.000595
S622V622FGttTtt11AY.660.00107
S622V622FGttTtt11AY.690.000187
S622V622AgTtgCt11AY.7.10.000113
S622V622FGttTtt11AY.7.20.000559
S622V622FGttTtt11AY.700.000209
S622V622FGttTtt11AY.710.000475
S622V622AgTtgCt11AY.710.000475
S622V622FGttTtt11AY.720.001361
S622V622FGttTtt11AY.730.000665
S622V622VgtTgtA11AY.730.000665
S622V622IGttAtt11AY.730.000665
S622V622AgTtgCt11AY.750.000056
S622V622FGttTtt11AY.75.10.00018
S622V622FGttTtt11AY.880.000884
S622V622IGttAtt11AY.880.000884
S622V622AgTtgCt11AY.90.000068
S622V622FGttTtt11AY.90.000068
S622V622VgtTgtC11AY.9.10.000084
S622V622AgTtgCt11AY.920.000287
S622V622LGttCtt11AY.930.000273
S622V622AgTtgCt11AY.930.000273
S622V622FGttTtt11AY.940.000443
S622V622VgtTgtC11AY.98.10.000048
S622V622LGttCtt11AY.98.10.000048
S622V622AgTtgCt11AY.98.10.000048
S622V622VgtTgtC11AY.990.001049
S622V622del2gTTg--11AY.99.20.000092
S622V622FGttTtt11AZ.20.000821
S622V622del1gTtg-t11B.1.10.000018
S622V622GgTtgGt11B.1.10.000018
S622V622FGttTtt11B.1.1.1210.002427
S622V622IGttAtt11B.1.1.1710.003676
S622V622FGttTtt11B.1.1.1760.000439
S622V622FGttTtt11B.1.1.1870.00885
S622V622FGttTtt11B.1.1.2140.000055
S622V622LGttCtt11B.1.1.2140.000055
S622V622FGttTtt11B.1.1.2200.001859
S622V622LGttCtt11B.1.1.2200.001859
S622V622FGttTtt11B.1.1.250.000569
S622V622IGttAtt11B.1.1.2770.000759
S622V622VgtTgtG11B.1.1.2940.001266
S622V622FGttTtt11B.1.1.3110.000358
S622V622FGttTtt11B.1.1.3370.003597
S622V622FGttTtt11B.1.1.3510.002793
S622V622FGttTtt11B.1.1.3690.000446
S622V622IGttAtt11B.1.1.3740.002375
S622V622FGttTtt11B.1.1.3890.006061
S622V622IGttAtt11B.1.1.390.00051
S622V622VgtTgtC11B.1.1.4160.000905
S622V622FGttTtt11B.1.1.5260.003546
S622V622FGttTtt11B.1.1.570.011494
S622V622del1gTtg-t11B.1.1.70.000001
S622V622GgTtgGt11B.1.1.70.000001
S622V622FGttTtt11B.1.1.700.000341
S622V622FGttTtt11B.1.1.750.010638
S622V622FGttTtt11B.1.1110.001175
S622V622AgTtgCt11B.1.1260.001276
S622V622AgTtgCt11B.1.1310.008772
S622V622LGttCtt11B.1.1430.021277
S622V622FGttTtt11B.1.1470.000756
S622V622FGttTtt11B.1.1490.003425
S622V622DgTtgAt11B.1.1600.000031
S622V622VgtTgtA11B.1.160.150.00495
S622V622AgTtgCt11B.1.160.160.000929
S622V622delGTT---11B.1.160.210.020408
S622V622AgTtgCt11B.1.1770.000013
S622V622FGttTtt11B.1.177.120.000152
S622V622AgTtgCt11B.1.177.160.000664
S622V622AgTtgCt11B.1.177.170.000821
S622V622FGttTtt11B.1.177.210.000076
S622V622FGttTtt11B.1.177.230.003236
S622V622VgtTgtA11B.1.177.30.007634
S622V622VgtTgtA11B.1.177.560.000668
S622V622FGttTtt11B.1.177.580.001332
S622V622FGttTtt11B.1.177.70.000165
S622V622FGttTtt11B.1.177.720.00339
S622V622LGttCtt11B.1.177.80.000752
S622V622FGttTtt11B.1.177.820.000477
S622V622FGttTtt11B.1.177.860.000183
S622V622del2gTTg--11B.1.20.000009
S622V622delGTT---11B.1.20.000009
S622V622FGttTtt11B.1.2010.005682
S622V622FGttTtt11B.1.2060.000816
S622V622IGttAtt11B.1.2210.000071
S622V622IGttAtt11B.1.221.30.000833
S622V622AgTtgCt11B.1.2220.001692
S622V622FGttTtt11B.1.2230.002778
S622V622FGttTtt11B.1.2370.004975
S622V622FGttTtt11B.1.2390.001221
S622V622IGttAtt11B.1.258.140.00098
S622V622AgTtgCt11B.1.258.170.000104
S622V622FGttTtt11B.1.2870.030303
S622V622FGttTtt11B.1.2890.00266
S622V622FGttTtt11B.1.3110.000275
S622V622IGttAtt11B.1.3460.001311
S622V622IGttAtt11B.1.3510.00003
S622V622AgTtgCt11B.1.3510.00003
S622V622FGttTtt11B.1.3560.001727
S622V622AgTtgCt11B.1.360.000146
S622V622FGttTtt11B.1.36.10.00114
S622V622AgTtgCt11B.1.36.160.001425
S622V622AgTtgCt11B.1.36.170.000494
S622V622VgtTgtA11B.1.36.180.00042
S622V622FGttTtt11B.1.36.290.000517
S622V622FGttTtt11B.1.36.360.000602
S622V622IGttAtt11B.1.3710.001122
S622V622IGttAtt11B.1.3910.001127
S622V622FGttTtt11B.1.3960.000706
S622V622FGttTtt11B.1.4040.001302
S622V622FGttTtt11B.1.4110.003704
S622V622FGttTtt11B.1.4160.001269
S622V622FGttTtt11B.1.4220.000812
S622V622GgTtgGt11B.1.4270.00005
S622V622IGttAtt11B.1.4270.00005
S622V622FGttTtt11B.1.4280.00102
S622V622FGttTtt11B.1.4480.002625
S622V622FGttTtt11B.1.466.20.000391
S622V622FGttTtt11B.1.4990.00105
S622V622AgTtgCt11B.1.5240.001406
S622V622FGttTtt11B.1.5240.001406
S622V622IGttAtt11B.1.5260.000024
S622V622FGttTtt11B.1.5280.047619
S622V622FGttTtt11B.1.5460.003704
S622V622FGttTtt11B.1.5510.00129
S622V622IGttAtt11B.1.5510.00129
S622V622FGttTtt11B.1.5600.00463
S622V622FGttTtt11B.1.5650.00081
S622V622VgtTgtC11B.1.5690.014493
S622V622FGttTtt11B.1.5760.000907
S622V622FGttTtt11B.1.5770.000687
S622V622FGttTtt11B.1.5850.027778
S622V622FGttTtt11B.1.5890.007576
S622V622IGttAtt11B.1.5960.000087
S622V622AgTtgCt11B.1.617.10.000129
S622V622delGTT---11B.1.617.20.000004
S622V622delGTT---11B.1.6200.000946
S622V622VgtTgtC11B.1.6210.000089
S622V622IGttAtt11B.1.621.10.000506
S622V622FGttTtt11B.1.6270.00202
S622V622IGttAtt11B.1.6280.000352
S622V622VgtTgtC11B.1.6370.000073
S622V622AgTtgCt11B.1.6370.000073
S622V622FGttTtt11B.1.6370.000073
S622V622delGTT---11B.100.008264
S622V622FGttTtt11B.560.028571
S622V622FGttTtt11B.6.60.000889
S622V622IGttAtt11C.10.002392
S622V622FGttTtt11C.140.004329
S622V622AgTtgCt11C.180.002591
S622V622FGttTtt11C.180.002591
S622V622LGttCtt11C.370.000116
S622V622AgTtgCt11C.370.000116
S622V622FGttTtt11C.37.10.002618
S622V622FGttTtt11D.20.000075
S622V622delGTT---11D.20.000075
S622V622FGttTtt11D.50.004975
S622V622FGttTtt11N.30.005814
S622V622AgTtgCt11N.40.004255
S622V622FGttTtt11P.1.10.000318
S622V622IGttAtt11P.1.120.000484
S622V622FGttTtt11P.1.120.000484
S622V622IGttAtt11P.1.140.000048
S622V622FGttTtt11P.1.170.000162
S622V622FGttTtt11P.1.90.004808
S622V622LGttCtt11Q.10.000126
S622V622FGttTtt11Q.40.000455
S622V622AgTtgCt11Q.80.000165
S622V622LGttCtt11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.