CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 620

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S620V620VsyngtCgtT369736230.97998423420-23422
S620V620VsyngtCgtA3697510.01379523420-23422
S620V620VsyngtCgtG3697230.0062212623420-23422
S620V620InonsynGtcAtc83820.98795223420-23422
S620V620InonsynGtCAtT8310.012048223420-23422
S620V620FnonsynGtcTtc4040123420-23422
S620V620deldelGTC---2222123420-23422
S620V620LnonsynGtcCtc20170.8523420-23422
S620V620LnonsynGtCTtA2030.1523420-23422
S620V620AnonsyngTcgCc88123420-23422
S620V620GnonsyngTcgGc530.623420-23422
S620V620GnonsyngTCgGT520.423420-23422
S620V620SnonsynGTCAGT320.66666723420-23422
S620V620del1delgtCgt-320.66666723420-23422
S620V620SnonsynGTcAGc310.33333323420-23422
S620V620del1delGtc-tc310.33333323420-23422
S620V620DnonsyngTcgAc11123420-23422

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S620V620VgtCgtT36233697All0.000693
S620V620VgtCgtA513697All0.00001
S620V620VgtCgtG233697All0.000004
S620V620VgtCgtT695706B.1.1.70.000622
S620V620VgtCgtG9706B.1.1.70.000008
S620V620VgtCgtA2706B.1.1.70.000002
S620V620VgtCgtT590590AY.40.000918
S620V620VgtCgtT217221B.1.617.20.000817
S620V620VgtCgtA4221B.1.617.20.000015
S620V620VgtCgtT170170R.10.015302
S620V620VgtCgtT169169B.1.1.5210.903743
S620V620VgtCgtT142142AY.50.002932
S620V620VgtCgtT127128AY.430.000563
S620V620VgtCgtA1128AY.430.000004
S620V620VgtCgtT117124B.10.001072
S620V620VgtCgtA6124B.10.000055
S620V620VgtCgtG1124B.10.000009
S620V620VgtCgtT113121B.1.10.00205
S620V620VgtCgtG8121B.1.10.000145
S620V620VgtCgtT106106B.1.1.700.036153
S620V620VgtCgtT8189AY.250.000487
S620V620VgtCgtA889AY.250.000048
S620V620IGtcAtc8283All0.000016
S620V620IGtCAtT183All0
S620V620VgtCgtT6060B.1.1770.00079
S620V620VgtCgtT5959AY.1020.001564
S620V620VgtCgtT4444B.1.1600.001372
S620V620VgtCgtT4144B.1.20.000361
S620V620VgtCgtA244B.1.20.000018
S620V620VgtCgtG144B.1.20.000009
S620V620VgtCgtT4142AY.440.00025
S620V620VgtCgtA142AY.440.000006
S620V620FGtcTtc4040All0.000008
S620V620IGtcAtc3838B.1.1.70.000034
S620V620VgtCgtT3838B.1.5260.000893
S620V620VgtCgtT3737AY.200.001438
S620V620VgtCgtT2931AY.1030.00018
S620V620VgtCgtA231AY.1030.000012
S620V620VgtCgtT2828B.1.1.2980.024138
S620V620VgtCgtT2727B.1.2580.001797
S620V620VgtCgtT2727B.1.690.964286
S620V620VgtCgtT1426B.1.5250.001584
S620V620VgtCgtA1226B.1.5250.001358
S620V620VgtCgtT2224AY.30.000219
S620V620VgtCgtA224AY.30.00002
S620V620VgtCgtT2424B.1.177.430.035451
S620V620VgtCgtT2323B.1.4290.000541
S620V620delGTC---2222All0.000004
S620V620VgtCgtT2222AY.390.000544
S620V620VgtCgtT2121B.1.4270.00106
S620V620LGtcCtc1720All0.000003
S620V620LGtCTtA320All0.000001
S620V620VgtCgtT1717P.10.000268
S620V620VgtCgtT1616B.1.1.2220.003264
S620V620VgtCgtT1616B.1.1.5190.000635
S620V620VgtCgtT1616B.1.160.300.047619
S620V620VgtCgtT1013AY.1190.000353
S620V620VgtCgtG313AY.1190.000106
S620V620VgtCgtT1212AY.260.00034
S620V620VgtCgtT1112AY.420.000443
S620V620VgtCgtA112AY.420.00004
S620V620VgtCgtT1212AY.46.60.000866
S620V620VgtCgtT1010AY.610.001048
S620V620IGtcAtc1010B.1.10.000181
S620V620VgtCgtT1010B.1.1.1570.009132
S620V620FGtcTtc1010B.1.1.70.000009
S620V620LGtcCtc1010B.1.1.70.000009
S620V620VgtCgtT1010B.1.2210.00071
S620V620VgtCgtT1010B.1.36.220.012077
S620V620VgtCgtT99C.370.001045
S620V620VgtCgtT88A.210.022161
S620V620AgTcgCc88All0.000002
S620V620VgtCgtT88AY.1210.001083
S620V620VgtCgtT88AY.9.20.000294
S620V620VgtCgtT88AY.920.002298
S620V620VgtCgtT77A.10.001973
S620V620VgtCgtT77AY.1000.000322
S620V620VgtCgtT77AY.4.20.000152
S620V620VgtCgtT77AY.450.000852
S620V620VgtCgtT77B.1.2430.000487
S620V620VgtCgtT77B.1.258.120.055118
S620V620VgtCgtT77B.1.4030.022876
S620V620VgtCgtT77Q.30.001015
S620V620VgtCgtT66AY.750.000336
S620V620VgtCgtT66AY.9.10.000502
S620V620VgtCgtT66B.1.1.2820.069767
S620V620VgtCgtT66B.1.3510.000178
S620V620VgtCgtT66B.1.5770.004124
S620V620VgtCgtT66B.1.6210.000531
S620V620VgtCgtT66B.1.6370.000438
S620V620GgTcgGc35All0.000001
S620V620GgTCgGT25All0
S620V620IGtcAtc55AY.30.00005
S620V620VgtCgtT55AY.330.000334
S620V620VgtCgtT55AY.470.000156
S620V620VgtCgtT55AY.98.10.000242
S620V620VgtCgtT55B.1.1.2140.000277
S620V620VgtCgtT55B.1.1.3180.001509
S620V620delGTC---55B.1.1.70.000004
S620V620VgtCgtT55B.1.5880.00455
S620V620VgtCgtT55P.1.140.000239
S620V620GgTCgGT240.111111
S620V620GgTcgGc240.111111
S620V620VgtCgtT44AT.10.020513
S620V620IGtcAtc44AY.1030.000025
S620V620VgtCgtT44AY.1170.000338
S620V620VgtCgtT44AY.230.000279
S620V620FGtcTtc44AY.40.000006
S620V620VgtCgtT44AY.460.000416
S620V620VgtCgtT44AY.60.000165
S620V620VgtCgtT44B.1.1.280.001245
S620V620VgtCgtT44B.1.1.3060.001754
S620V620VgtCgtT44B.1.1.4320.005063
S620V620FGtcTtc44B.1.1770.000053
S620V620VgtCgtT44B.1.5670.013333
S620V620VgtCgtT44B.1.5960.000349
S620V620FGtcTtc44P.10.000063
S620V620VgtCgtT44P.1.70.001277
S620V620VgtCgtT330.166667
S620V620SGTCAGT23All0
S620V620del1gtCgt-23All0
S620V620SGTcAGc13All0
S620V620del1Gtc-tc13All0
S620V620VgtCgtT33AY.1200.000112
S620V620VgtCgtT33AY.270.000194
S620V620VgtCgtA23AY.300.000791
S620V620VgtCgtT13AY.300.000396
S620V620VgtCgtT23AY.360.000296
S620V620VgtCgtA13AY.360.000148
S620V620delGTC---33AY.40.000005
S620V620VgtCgtT33AY.590.001589
S620V620VgtCgtT33AY.910.002191
S620V620VgtCgtT23B0.000256
S620V620VgtCgtA13B0.000128
S620V620FGtcTtc33B.10.000027
S620V620LGtCTtA33B.10.000027
S620V620VgtCgtT33B.1.1390.002199
S620V620VgtCgtT33B.1.177.600.000655
S620V620VgtCgtT33B.1.258.210.023256
S620V620VgtCgtT33B.1.3490.002144
S620V620VgtCgtT33B.1.5650.002431
S620V620IGtcAtc33B.1.617.20.000011
S620V620FGtcTtc33D.20.000225
S620V620VgtCgtT33Q.80.000495
S620V620SGTcAGc120.055556
S620V620IGtcAtc120.055556
S620V620SGTCAGT120.055556
S620V620IGtCAtT120.055556
S620V620VgtCgtT12A0.000387
S620V620VgtCgtA12A0.000387
S620V620VgtCgtT22A.190.018868
S620V620VgtCgtT22AY.100.00106
S620V620VgtCgtT22AY.1060.00067
S620V620VgtCgtT22AY.1100.000225
S620V620IGtcAtc22AY.290.000032
S620V620VgtCgtT22AY.290.000032
S620V620VgtCgtT22AY.340.000194
S620V620IGtcAtc22AY.390.000049
S620V620VgtCgtT22AY.39.10.000079
S620V620IGtcAtc22AY.40.000003
S620V620VgtCgtT22AY.4.50.000215
S620V620VgtCgtT22AY.46.50.000397
S620V620VgtCgtT22AY.5.10.007519
S620V620VgtCgtT22AY.670.000929
S620V620VgtCgtT22AY.680.000547
S620V620VgtCgtT22AY.75.10.000361
S620V620VgtCgtT22AY.99.20.000184
S620V620AgTcgCc22B.10.000018
S620V620delGTC---22B.10.000018
S620V620VgtCgtT22B.1.1.10.000653
S620V620VgtCgtT22B.1.1.1740.006757
S620V620VgtCgtT22B.1.1.2160.001781
S620V620VgtCgtT22B.1.1.250.001137
S620V620VgtCgtT22B.1.1.3110.000716
S620V620delGTC---22B.1.1.4340.000697
S620V620VgtCgtT22B.1.110.10.2
S620V620VgtCgtT22B.1.177.40.000422
S620V620IGtcAtc22B.1.20.000018
S620V620VgtCgtT22B.1.2400.000431
S620V620VgtCgtT22B.1.360.000292
S620V620VgtCgtT22B.1.429.10.024096
S620V620VgtCgtT22B.1.5910.021277
S620V620VgtCgtG12B.400.000364
S620V620VgtCgtT12B.400.000364
S620V620VgtCgtT22B.560.057143
S620V620IGtcAtc22P.10.000032
S620V620VgtCgtT22P.1.150.000465
S620V620VgtCgtT22P.20.000373
S620V620VgtCgtT22Q.40.00091
S620V620VgtCgtA22Q.70.002222
S620V620IGtcAtc22R.10.00018
S620V620VgtCgtT11A.2.20.001689
S620V620VgtCgtT11AD.20.000219
S620V620DgTcgAc11All0
S620V620VgtCgtT11AY.10.000396
S620V620VgtCgtT11AY.1010.00049
S620V620FGtcTtc11AY.1030.000006
S620V620VgtCgtT11AY.1130.000142
S620V620VgtCgtT11AY.1160.000287
S620V620LGtcCtc11AY.1170.000085
S620V620FGtcTtc11AY.1180.000063
S620V620VgtCgtT11AY.120.000316
S620V620LGtcCtc11AY.120.000316
S620V620IGtcAtc11AY.120.10.000321
S620V620IGtcAtc11AY.1210.000135
S620V620VgtCgtT11AY.130.000161
S620V620VgtCgtT11AY.140.000088
S620V620delGTC---11AY.160.00038
S620V620VgtCgtA11AY.160.00038
S620V620VgtCgtT11AY.16.10.00047
S620V620FGtcTtc11AY.250.000006
S620V620FGtcTtc11AY.270.000065
S620V620SGTCAGT11AY.30.00001
S620V620FGtcTtc11AY.340.000097
S620V620VgtCgtT11AY.380.000499
S620V620delGTC---11AY.380.000499
S620V620AgTcgCc11AY.40.000002
S620V620LGtcCtc11AY.40.000002
S620V620delGTC---11AY.4.20.000022
S620V620VgtCgtT11AY.4.40.000409
S620V620IGtcAtc11AY.4.50.000107
S620V620FGtcTtc11AY.430.000004
S620V620delGTC---11AY.430.000004
S620V620del1Gtc-tc11AY.430.000004
S620V620IGtcAtc11AY.440.000006
S620V620del1gtCgt-11AY.440.000006
S620V620LGtcCtc11AY.460.000104
S620V620VgtCgtT11AY.46.40.000165
S620V620IGtcAtc11AY.46.60.000072
S620V620VgtCgtT11AY.5.40.000277
S620V620VgtCgtT11AY.500.000799
S620V620VgtCgtT11AY.520.000814
S620V620VgtCgtT11AY.560.001605
S620V620VgtCgtT11AY.620.000436
S620V620VgtCgtT11AY.650.000533
S620V620VgtCgtT11AY.70.000196
S620V620VgtCgtT11AY.7.10.000113
S620V620VgtCgtT11AY.710.000475
S620V620VgtCgtT11AY.790.001211
S620V620VgtCgtT11AY.800.001129
S620V620VgtCgtT11AY.810.001992
S620V620VgtCgtT11AY.850.000427
S620V620VgtCgtT11AY.870.000833
S620V620VgtCgtT11AY.950.000761
S620V620VgtCgtT11AY.960.002075
S620V620VgtCgtT11AY.980.000079
S620V620delGTC---11AY.99.20.000092
S620V620FGtcTtc11B0.000128
S620V620AgTcgCc11B0.000128
S620V620del1gtCgt-11B.10.000009
S620V620VgtCgtT11B.1.1.1160.0625
S620V620DgTcgAc11B.1.1.1530.001095
S620V620FGtcTtc11B.1.1.250.000569
S620V620VgtCgtT11B.1.1.2540.011236
S620V620VgtCgtT11B.1.1.2840.000107
S620V620VgtCgtT11B.1.1.2910.000742
S620V620VgtCgtT11B.1.1.2940.001266
S620V620VgtCgtT11B.1.1.3220.008772
S620V620VgtCgtT11B.1.1.330.000421
S620V620VgtCgtT11B.1.1.3480.000796
S620V620VgtCgtT11B.1.1.3610.045455
S620V620VgtCgtT11B.1.1.370.000193
S620V620VgtCgtT11B.1.1.3970.002252
S620V620VgtCgtT11B.1.1.4340.000349
S620V620VgtCgtT11B.1.1.4670.019231
S620V620LGtcCtc11B.1.1.500.000679
S620V620AgTcgCc11B.1.1.70.000001
S620V620VgtCgtT11B.1.1260.001276
S620V620GgTcgGc11B.1.1600.000031
S620V620AgTcgCc11B.1.1770.000013
S620V620VgtCgtT11B.1.177.230.003236
S620V620VgtCgtT11B.1.177.450.000381
S620V620FGtcTtc11B.1.177.600.000218
S620V620VgtCgtT11B.1.177.800.001912
S620V620delGTC---11B.1.20.000009
S620V620IGtcAtc11B.1.2210.000071
S620V620IGtcAtc11B.1.2320.000537
S620V620VgtCgtT11B.1.2410.000812
S620V620FGtcTtc11B.1.258.170.000104
S620V620VgtCgtT11B.1.258.170.000104
S620V620VgtCgtT11B.1.2800.007143
S620V620FGtcTtc11B.1.351.30.000876
S620V620VgtCgtT11B.1.351.30.000876
S620V620VgtCgtT11B.1.36.10.00114
S620V620VgtCgtT11B.1.36.170.000494
S620V620VgtCgtT11B.1.36.180.00042
S620V620VgtCgtT11B.1.36.290.000517
S620V620VgtCgtT11B.1.36.350.002604
S620V620VgtCgtT11B.1.36.70.004
S620V620VgtCgtA11B.1.3670.000792
S620V620IGtcAtc11B.1.3770.004566
S620V620VgtCgtT11B.1.3980.002976
S620V620VgtCgtT11B.1.4000.000429
S620V620VgtCgtT11B.1.4040.001302
S620V620VgtCgtT11B.1.416.10.001563
S620V620VgtCgtT11B.1.5640.000426
S620V620delGTC---11B.1.5640.000426
S620V620VgtCgtT11B.1.5680.001111
S620V620VgtCgtT11B.1.5950.000261
S620V620AgTcgCc11B.1.5960.000087
S620V620LGtcCtc11B.1.617.20.000004
S620V620AgTcgCc11B.1.617.20.000004
S620V620delGTC---11B.1.617.20.000004
S620V620delGTC---11B.1.6200.000946
S620V620VgtCgtT11B.1.621.10.000506
S620V620VgtCgtA11B.1.6230.000536
S620V620LGtcCtc11B.1.6370.000073
S620V620VgtCgtT11B.1.9.40.006135
S620V620VgtCgtT11B.3.10.001658
S620V620VgtCgtT11B.580.010204
S620V620VgtCgtT11B.60.00091
S620V620VgtCgtT11C.36.10.004149
S620V620VgtCgtT11D.20.000075
S620V620delGTC---11D.20.000075
S620V620FGtcTtc11P.1.140.000048
S620V620VgtCgtT11P.1.90.004808
S620V620VgtCgtT11Q.10.000126
S620V620IGtcAtc11Q.30.000145