CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 620

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	620	V620V		syn	gtC	gtT	3697	3623	0.979984	23420-23422
S	620	V620V		syn	gtC	gtA	3697	51	0.013795	23420-23422
S	620	V620V		syn	gtC	gtG	3697	23	0.00622126	23420-23422
S	620	V620I		nonsyn	Gtc	Atc	83	82	0.987952	23420-23422
S	620	V620I		nonsyn	GtC	AtT	83	1	0.0120482	23420-23422
S	620	V620F		nonsyn	Gtc	Ttc	40	40	1	23420-23422
S	620	V620del		del	GTC	---	22	22	1	23420-23422
S	620	V620L		nonsyn	Gtc	Ctc	20	17	0.85	23420-23422
S	620	V620L		nonsyn	GtC	TtA	20	3	0.15	23420-23422
S	620	V620A		nonsyn	gTc	gCc	8	8	1	23420-23422
S	620	V620G		nonsyn	gTc	gGc	5	3	0.6	23420-23422
S	620	V620G		nonsyn	gTC	gGT	5	2	0.4	23420-23422
S	620	V620S		nonsyn	GTC	AGT	3	2	0.666667	23420-23422
S	620	V620del1		del	gtC	gt-	3	2	0.666667	23420-23422
S	620	V620S		nonsyn	GTc	AGc	3	1	0.333333	23420-23422
S	620	V620del1		del	Gtc	-tc	3	1	0.333333	23420-23422
S	620	V620D		nonsyn	gTc	gAc	1	1	1	23420-23422

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	620	V620V	gtC	gtT	3623	3697	All	0.000693
S	620	V620V	gtC	gtA	51	3697	All	0.00001
S	620	V620V	gtC	gtG	23	3697	All	0.000004
S	620	V620V	gtC	gtT	695	706	B.1.1.7	0.000622
S	620	V620V	gtC	gtG	9	706	B.1.1.7	0.000008
S	620	V620V	gtC	gtA	2	706	B.1.1.7	0.000002
S	620	V620V	gtC	gtT	590	590	AY.4	0.000918
S	620	V620V	gtC	gtT	217	221	B.1.617.2	0.000817
S	620	V620V	gtC	gtA	4	221	B.1.617.2	0.000015
S	620	V620V	gtC	gtT	170	170	R.1	0.015302
S	620	V620V	gtC	gtT	169	169	B.1.1.521	0.903743
S	620	V620V	gtC	gtT	142	142	AY.5	0.002932
S	620	V620V	gtC	gtT	127	128	AY.43	0.000563
S	620	V620V	gtC	gtA	1	128	AY.43	0.000004
S	620	V620V	gtC	gtT	117	124	B.1	0.001072
S	620	V620V	gtC	gtA	6	124	B.1	0.000055
S	620	V620V	gtC	gtG	1	124	B.1	0.000009
S	620	V620V	gtC	gtT	113	121	B.1.1	0.00205
S	620	V620V	gtC	gtG	8	121	B.1.1	0.000145
S	620	V620V	gtC	gtT	106	106	B.1.1.70	0.036153
S	620	V620V	gtC	gtT	81	89	AY.25	0.000487
S	620	V620V	gtC	gtA	8	89	AY.25	0.000048
S	620	V620I	Gtc	Atc	82	83	All	0.000016
S	620	V620I	GtC	AtT	1	83	All	0
S	620	V620V	gtC	gtT	60	60	B.1.177	0.00079
S	620	V620V	gtC	gtT	59	59	AY.102	0.001564
S	620	V620V	gtC	gtT	44	44	B.1.160	0.001372
S	620	V620V	gtC	gtT	41	44	B.1.2	0.000361
S	620	V620V	gtC	gtA	2	44	B.1.2	0.000018
S	620	V620V	gtC	gtG	1	44	B.1.2	0.000009
S	620	V620V	gtC	gtT	41	42	AY.44	0.00025
S	620	V620V	gtC	gtA	1	42	AY.44	0.000006
S	620	V620F	Gtc	Ttc	40	40	All	0.000008
S	620	V620I	Gtc	Atc	38	38	B.1.1.7	0.000034
S	620	V620V	gtC	gtT	38	38	B.1.526	0.000893
S	620	V620V	gtC	gtT	37	37	AY.20	0.001438
S	620	V620V	gtC	gtT	29	31	AY.103	0.00018
S	620	V620V	gtC	gtA	2	31	AY.103	0.000012
S	620	V620V	gtC	gtT	28	28	B.1.1.298	0.024138
S	620	V620V	gtC	gtT	27	27	B.1.258	0.001797
S	620	V620V	gtC	gtT	27	27	B.1.69	0.964286
S	620	V620V	gtC	gtT	14	26	B.1.525	0.001584
S	620	V620V	gtC	gtA	12	26	B.1.525	0.001358
S	620	V620V	gtC	gtT	22	24	AY.3	0.000219
S	620	V620V	gtC	gtA	2	24	AY.3	0.00002
S	620	V620V	gtC	gtT	24	24	B.1.177.43	0.035451
S	620	V620V	gtC	gtT	23	23	B.1.429	0.000541
S	620	V620del	GTC	---	22	22	All	0.000004
S	620	V620V	gtC	gtT	22	22	AY.39	0.000544
S	620	V620V	gtC	gtT	21	21	B.1.427	0.00106
S	620	V620L	Gtc	Ctc	17	20	All	0.000003
S	620	V620L	GtC	TtA	3	20	All	0.000001
S	620	V620V	gtC	gtT	17	17	P.1	0.000268
S	620	V620V	gtC	gtT	16	16	B.1.1.222	0.003264
S	620	V620V	gtC	gtT	16	16	B.1.1.519	0.000635
S	620	V620V	gtC	gtT	16	16	B.1.160.30	0.047619
S	620	V620V	gtC	gtT	10	13	AY.119	0.000353
S	620	V620V	gtC	gtG	3	13	AY.119	0.000106
S	620	V620V	gtC	gtT	12	12	AY.26	0.00034
S	620	V620V	gtC	gtT	11	12	AY.42	0.000443
S	620	V620V	gtC	gtA	1	12	AY.42	0.00004
S	620	V620V	gtC	gtT	12	12	AY.46.6	0.000866
S	620	V620V	gtC	gtT	10	10	AY.61	0.001048
S	620	V620I	Gtc	Atc	10	10	B.1.1	0.000181
S	620	V620V	gtC	gtT	10	10	B.1.1.157	0.009132
S	620	V620F	Gtc	Ttc	10	10	B.1.1.7	0.000009
S	620	V620L	Gtc	Ctc	10	10	B.1.1.7	0.000009
S	620	V620V	gtC	gtT	10	10	B.1.221	0.00071
S	620	V620V	gtC	gtT	10	10	B.1.36.22	0.012077
S	620	V620V	gtC	gtT	9	9	C.37	0.001045
S	620	V620V	gtC	gtT	8	8	A.21	0.022161
S	620	V620A	gTc	gCc	8	8	All	0.000002
S	620	V620V	gtC	gtT	8	8	AY.121	0.001083
S	620	V620V	gtC	gtT	8	8	AY.9.2	0.000294
S	620	V620V	gtC	gtT	8	8	AY.92	0.002298
S	620	V620V	gtC	gtT	7	7	A.1	0.001973
S	620	V620V	gtC	gtT	7	7	AY.100	0.000322
S	620	V620V	gtC	gtT	7	7	AY.4.2	0.000152
S	620	V620V	gtC	gtT	7	7	AY.45	0.000852
S	620	V620V	gtC	gtT	7	7	B.1.243	0.000487
S	620	V620V	gtC	gtT	7	7	B.1.258.12	0.055118
S	620	V620V	gtC	gtT	7	7	B.1.403	0.022876
S	620	V620V	gtC	gtT	7	7	Q.3	0.001015
S	620	V620V	gtC	gtT	6	6	AY.75	0.000336
S	620	V620V	gtC	gtT	6	6	AY.9.1	0.000502
S	620	V620V	gtC	gtT	6	6	B.1.1.282	0.069767
S	620	V620V	gtC	gtT	6	6	B.1.351	0.000178
S	620	V620V	gtC	gtT	6	6	B.1.577	0.004124
S	620	V620V	gtC	gtT	6	6	B.1.621	0.000531
S	620	V620V	gtC	gtT	6	6	B.1.637	0.000438
S	620	V620G	gTc	gGc	3	5	All	0.000001
S	620	V620G	gTC	gGT	2	5	All	0
S	620	V620I	Gtc	Atc	5	5	AY.3	0.00005
S	620	V620V	gtC	gtT	5	5	AY.33	0.000334
S	620	V620V	gtC	gtT	5	5	AY.47	0.000156
S	620	V620V	gtC	gtT	5	5	AY.98.1	0.000242
S	620	V620V	gtC	gtT	5	5	B.1.1.214	0.000277
S	620	V620V	gtC	gtT	5	5	B.1.1.318	0.001509
S	620	V620del	GTC	---	5	5	B.1.1.7	0.000004
S	620	V620V	gtC	gtT	5	5	B.1.588	0.00455
S	620	V620V	gtC	gtT	5	5	P.1.14	0.000239
S	620	V620G	gTC	gGT	2	4		0.111111
S	620	V620G	gTc	gGc	2	4		0.111111
S	620	V620V	gtC	gtT	4	4	AT.1	0.020513
S	620	V620I	Gtc	Atc	4	4	AY.103	0.000025
S	620	V620V	gtC	gtT	4	4	AY.117	0.000338
S	620	V620V	gtC	gtT	4	4	AY.23	0.000279
S	620	V620F	Gtc	Ttc	4	4	AY.4	0.000006
S	620	V620V	gtC	gtT	4	4	AY.46	0.000416
S	620	V620V	gtC	gtT	4	4	AY.6	0.000165
S	620	V620V	gtC	gtT	4	4	B.1.1.28	0.001245
S	620	V620V	gtC	gtT	4	4	B.1.1.306	0.001754
S	620	V620V	gtC	gtT	4	4	B.1.1.432	0.005063
S	620	V620F	Gtc	Ttc	4	4	B.1.177	0.000053
S	620	V620V	gtC	gtT	4	4	B.1.567	0.013333
S	620	V620V	gtC	gtT	4	4	B.1.596	0.000349
S	620	V620F	Gtc	Ttc	4	4	P.1	0.000063
S	620	V620V	gtC	gtT	4	4	P.1.7	0.001277
S	620	V620V	gtC	gtT	3	3		0.166667
S	620	V620S	GTC	AGT	2	3	All	0
S	620	V620del1	gtC	gt-	2	3	All	0
S	620	V620S	GTc	AGc	1	3	All	0
S	620	V620del1	Gtc	-tc	1	3	All	0
S	620	V620V	gtC	gtT	3	3	AY.120	0.000112
S	620	V620V	gtC	gtT	3	3	AY.27	0.000194
S	620	V620V	gtC	gtA	2	3	AY.30	0.000791
S	620	V620V	gtC	gtT	1	3	AY.30	0.000396
S	620	V620V	gtC	gtT	2	3	AY.36	0.000296
S	620	V620V	gtC	gtA	1	3	AY.36	0.000148
S	620	V620del	GTC	---	3	3	AY.4	0.000005
S	620	V620V	gtC	gtT	3	3	AY.59	0.001589
S	620	V620V	gtC	gtT	3	3	AY.91	0.002191
S	620	V620V	gtC	gtT	2	3	B	0.000256
S	620	V620V	gtC	gtA	1	3	B	0.000128
S	620	V620F	Gtc	Ttc	3	3	B.1	0.000027
S	620	V620L	GtC	TtA	3	3	B.1	0.000027
S	620	V620V	gtC	gtT	3	3	B.1.139	0.002199
S	620	V620V	gtC	gtT	3	3	B.1.177.60	0.000655
S	620	V620V	gtC	gtT	3	3	B.1.258.21	0.023256
S	620	V620V	gtC	gtT	3	3	B.1.349	0.002144
S	620	V620V	gtC	gtT	3	3	B.1.565	0.002431
S	620	V620I	Gtc	Atc	3	3	B.1.617.2	0.000011
S	620	V620F	Gtc	Ttc	3	3	D.2	0.000225
S	620	V620V	gtC	gtT	3	3	Q.8	0.000495
S	620	V620S	GTc	AGc	1	2		0.055556
S	620	V620I	Gtc	Atc	1	2		0.055556
S	620	V620S	GTC	AGT	1	2		0.055556
S	620	V620I	GtC	AtT	1	2		0.055556
S	620	V620V	gtC	gtT	1	2	A	0.000387
S	620	V620V	gtC	gtA	1	2	A	0.000387
S	620	V620V	gtC	gtT	2	2	A.19	0.018868
S	620	V620V	gtC	gtT	2	2	AY.10	0.00106
S	620	V620V	gtC	gtT	2	2	AY.106	0.00067
S	620	V620V	gtC	gtT	2	2	AY.110	0.000225
S	620	V620I	Gtc	Atc	2	2	AY.29	0.000032
S	620	V620V	gtC	gtT	2	2	AY.29	0.000032
S	620	V620V	gtC	gtT	2	2	AY.34	0.000194
S	620	V620I	Gtc	Atc	2	2	AY.39	0.000049
S	620	V620V	gtC	gtT	2	2	AY.39.1	0.000079
S	620	V620I	Gtc	Atc	2	2	AY.4	0.000003
S	620	V620V	gtC	gtT	2	2	AY.4.5	0.000215
S	620	V620V	gtC	gtT	2	2	AY.46.5	0.000397
S	620	V620V	gtC	gtT	2	2	AY.5.1	0.007519
S	620	V620V	gtC	gtT	2	2	AY.67	0.000929
S	620	V620V	gtC	gtT	2	2	AY.68	0.000547
S	620	V620V	gtC	gtT	2	2	AY.75.1	0.000361
S	620	V620V	gtC	gtT	2	2	AY.99.2	0.000184
S	620	V620A	gTc	gCc	2	2	B.1	0.000018
S	620	V620del	GTC	---	2	2	B.1	0.000018
S	620	V620V	gtC	gtT	2	2	B.1.1.1	0.000653
S	620	V620V	gtC	gtT	2	2	B.1.1.174	0.006757
S	620	V620V	gtC	gtT	2	2	B.1.1.216	0.001781
S	620	V620V	gtC	gtT	2	2	B.1.1.25	0.001137
S	620	V620V	gtC	gtT	2	2	B.1.1.311	0.000716
S	620	V620del	GTC	---	2	2	B.1.1.434	0.000697
S	620	V620V	gtC	gtT	2	2	B.1.110.1	0.2
S	620	V620V	gtC	gtT	2	2	B.1.177.4	0.000422
S	620	V620I	Gtc	Atc	2	2	B.1.2	0.000018
S	620	V620V	gtC	gtT	2	2	B.1.240	0.000431
S	620	V620V	gtC	gtT	2	2	B.1.36	0.000292
S	620	V620V	gtC	gtT	2	2	B.1.429.1	0.024096
S	620	V620V	gtC	gtT	2	2	B.1.591	0.021277
S	620	V620V	gtC	gtG	1	2	B.40	0.000364
S	620	V620V	gtC	gtT	1	2	B.40	0.000364
S	620	V620V	gtC	gtT	2	2	B.56	0.057143
S	620	V620I	Gtc	Atc	2	2	P.1	0.000032
S	620	V620V	gtC	gtT	2	2	P.1.15	0.000465
S	620	V620V	gtC	gtT	2	2	P.2	0.000373
S	620	V620V	gtC	gtT	2	2	Q.4	0.00091
S	620	V620V	gtC	gtA	2	2	Q.7	0.002222
S	620	V620I	Gtc	Atc	2	2	R.1	0.00018
S	620	V620V	gtC	gtT	1	1	A.2.2	0.001689
S	620	V620V	gtC	gtT	1	1	AD.2	0.000219
S	620	V620D	gTc	gAc	1	1	All	0
S	620	V620V	gtC	gtT	1	1	AY.1	0.000396
S	620	V620V	gtC	gtT	1	1	AY.101	0.00049
S	620	V620F	Gtc	Ttc	1	1	AY.103	0.000006
S	620	V620V	gtC	gtT	1	1	AY.113	0.000142
S	620	V620V	gtC	gtT	1	1	AY.116	0.000287
S	620	V620L	Gtc	Ctc	1	1	AY.117	0.000085
S	620	V620F	Gtc	Ttc	1	1	AY.118	0.000063
S	620	V620V	gtC	gtT	1	1	AY.12	0.000316
S	620	V620L	Gtc	Ctc	1	1	AY.12	0.000316
S	620	V620I	Gtc	Atc	1	1	AY.120.1	0.000321
S	620	V620I	Gtc	Atc	1	1	AY.121	0.000135
S	620	V620V	gtC	gtT	1	1	AY.13	0.000161
S	620	V620V	gtC	gtT	1	1	AY.14	0.000088
S	620	V620del	GTC	---	1	1	AY.16	0.00038
S	620	V620V	gtC	gtA	1	1	AY.16	0.00038
S	620	V620V	gtC	gtT	1	1	AY.16.1	0.00047
S	620	V620F	Gtc	Ttc	1	1	AY.25	0.000006
S	620	V620F	Gtc	Ttc	1	1	AY.27	0.000065
S	620	V620S	GTC	AGT	1	1	AY.3	0.00001
S	620	V620F	Gtc	Ttc	1	1	AY.34	0.000097
S	620	V620V	gtC	gtT	1	1	AY.38	0.000499
S	620	V620del	GTC	---	1	1	AY.38	0.000499
S	620	V620A	gTc	gCc	1	1	AY.4	0.000002
S	620	V620L	Gtc	Ctc	1	1	AY.4	0.000002
S	620	V620del	GTC	---	1	1	AY.4.2	0.000022
S	620	V620V	gtC	gtT	1	1	AY.4.4	0.000409
S	620	V620I	Gtc	Atc	1	1	AY.4.5	0.000107
S	620	V620F	Gtc	Ttc	1	1	AY.43	0.000004
S	620	V620del	GTC	---	1	1	AY.43	0.000004
S	620	V620del1	Gtc	-tc	1	1	AY.43	0.000004
S	620	V620I	Gtc	Atc	1	1	AY.44	0.000006
S	620	V620del1	gtC	gt-	1	1	AY.44	0.000006
S	620	V620L	Gtc	Ctc	1	1	AY.46	0.000104
S	620	V620V	gtC	gtT	1	1	AY.46.4	0.000165
S	620	V620I	Gtc	Atc	1	1	AY.46.6	0.000072
S	620	V620V	gtC	gtT	1	1	AY.5.4	0.000277
S	620	V620V	gtC	gtT	1	1	AY.50	0.000799
S	620	V620V	gtC	gtT	1	1	AY.52	0.000814
S	620	V620V	gtC	gtT	1	1	AY.56	0.001605
S	620	V620V	gtC	gtT	1	1	AY.62	0.000436
S	620	V620V	gtC	gtT	1	1	AY.65	0.000533
S	620	V620V	gtC	gtT	1	1	AY.7	0.000196
S	620	V620V	gtC	gtT	1	1	AY.7.1	0.000113
S	620	V620V	gtC	gtT	1	1	AY.71	0.000475
S	620	V620V	gtC	gtT	1	1	AY.79	0.001211
S	620	V620V	gtC	gtT	1	1	AY.80	0.001129
S	620	V620V	gtC	gtT	1	1	AY.81	0.001992
S	620	V620V	gtC	gtT	1	1	AY.85	0.000427
S	620	V620V	gtC	gtT	1	1	AY.87	0.000833
S	620	V620V	gtC	gtT	1	1	AY.95	0.000761
S	620	V620V	gtC	gtT	1	1	AY.96	0.002075
S	620	V620V	gtC	gtT	1	1	AY.98	0.000079
S	620	V620del	GTC	---	1	1	AY.99.2	0.000092
S	620	V620F	Gtc	Ttc	1	1	B	0.000128
S	620	V620A	gTc	gCc	1	1	B	0.000128
S	620	V620del1	gtC	gt-	1	1	B.1	0.000009
S	620	V620V	gtC	gtT	1	1	B.1.1.116	0.0625
S	620	V620D	gTc	gAc	1	1	B.1.1.153	0.001095
S	620	V620F	Gtc	Ttc	1	1	B.1.1.25	0.000569
S	620	V620V	gtC	gtT	1	1	B.1.1.254	0.011236
S	620	V620V	gtC	gtT	1	1	B.1.1.284	0.000107
S	620	V620V	gtC	gtT	1	1	B.1.1.291	0.000742
S	620	V620V	gtC	gtT	1	1	B.1.1.294	0.001266
S	620	V620V	gtC	gtT	1	1	B.1.1.322	0.008772
S	620	V620V	gtC	gtT	1	1	B.1.1.33	0.000421
S	620	V620V	gtC	gtT	1	1	B.1.1.348	0.000796
S	620	V620V	gtC	gtT	1	1	B.1.1.361	0.045455
S	620	V620V	gtC	gtT	1	1	B.1.1.37	0.000193
S	620	V620V	gtC	gtT	1	1	B.1.1.397	0.002252
S	620	V620V	gtC	gtT	1	1	B.1.1.434	0.000349
S	620	V620V	gtC	gtT	1	1	B.1.1.467	0.019231
S	620	V620L	Gtc	Ctc	1	1	B.1.1.50	0.000679
S	620	V620A	gTc	gCc	1	1	B.1.1.7	0.000001
S	620	V620V	gtC	gtT	1	1	B.1.126	0.001276
S	620	V620G	gTc	gGc	1	1	B.1.160	0.000031
S	620	V620A	gTc	gCc	1	1	B.1.177	0.000013
S	620	V620V	gtC	gtT	1	1	B.1.177.23	0.003236
S	620	V620V	gtC	gtT	1	1	B.1.177.45	0.000381
S	620	V620F	Gtc	Ttc	1	1	B.1.177.60	0.000218
S	620	V620V	gtC	gtT	1	1	B.1.177.80	0.001912
S	620	V620del	GTC	---	1	1	B.1.2	0.000009
S	620	V620I	Gtc	Atc	1	1	B.1.221	0.000071
S	620	V620I	Gtc	Atc	1	1	B.1.232	0.000537
S	620	V620V	gtC	gtT	1	1	B.1.241	0.000812
S	620	V620F	Gtc	Ttc	1	1	B.1.258.17	0.000104
S	620	V620V	gtC	gtT	1	1	B.1.258.17	0.000104
S	620	V620V	gtC	gtT	1	1	B.1.280	0.007143
S	620	V620F	Gtc	Ttc	1	1	B.1.351.3	0.000876
S	620	V620V	gtC	gtT	1	1	B.1.351.3	0.000876
S	620	V620V	gtC	gtT	1	1	B.1.36.1	0.00114
S	620	V620V	gtC	gtT	1	1	B.1.36.17	0.000494
S	620	V620V	gtC	gtT	1	1	B.1.36.18	0.00042
S	620	V620V	gtC	gtT	1	1	B.1.36.29	0.000517
S	620	V620V	gtC	gtT	1	1	B.1.36.35	0.002604
S	620	V620V	gtC	gtT	1	1	B.1.36.7	0.004
S	620	V620V	gtC	gtA	1	1	B.1.367	0.000792
S	620	V620I	Gtc	Atc	1	1	B.1.377	0.004566
S	620	V620V	gtC	gtT	1	1	B.1.398	0.002976
S	620	V620V	gtC	gtT	1	1	B.1.400	0.000429
S	620	V620V	gtC	gtT	1	1	B.1.404	0.001302
S	620	V620V	gtC	gtT	1	1	B.1.416.1	0.001563
S	620	V620V	gtC	gtT	1	1	B.1.564	0.000426
S	620	V620del	GTC	---	1	1	B.1.564	0.000426
S	620	V620V	gtC	gtT	1	1	B.1.568	0.001111
S	620	V620V	gtC	gtT	1	1	B.1.595	0.000261
S	620	V620A	gTc	gCc	1	1	B.1.596	0.000087
S	620	V620L	Gtc	Ctc	1	1	B.1.617.2	0.000004
S	620	V620A	gTc	gCc	1	1	B.1.617.2	0.000004
S	620	V620del	GTC	---	1	1	B.1.617.2	0.000004
S	620	V620del	GTC	---	1	1	B.1.620	0.000946
S	620	V620V	gtC	gtT	1	1	B.1.621.1	0.000506
S	620	V620V	gtC	gtA	1	1	B.1.623	0.000536
S	620	V620L	Gtc	Ctc	1	1	B.1.637	0.000073
S	620	V620V	gtC	gtT	1	1	B.1.9.4	0.006135
S	620	V620V	gtC	gtT	1	1	B.3.1	0.001658
S	620	V620V	gtC	gtT	1	1	B.58	0.010204
S	620	V620V	gtC	gtT	1	1	B.6	0.00091
S	620	V620V	gtC	gtT	1	1	C.36.1	0.004149
S	620	V620V	gtC	gtT	1	1	D.2	0.000075
S	620	V620del	GTC	---	1	1	D.2	0.000075
S	620	V620F	Gtc	Ttc	1	1	P.1.14	0.000048
S	620	V620V	gtC	gtT	1	1	P.1.9	0.004808
S	620	V620V	gtC	gtT	1	1	Q.1	0.000126
S	620	V620I	Gtc	Atc	1	1	Q.3	0.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.