CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 62 | V62del | del | GTT | --- | 793 | 793 | 1 | 21746-21748 | |
S | 62 | V62L | nonsyn | Gtt | Ctt | 743 | 718 | 0.966353 | 21746-21748 | |
S | 62 | V62L | nonsyn | GtT | CtG | 743 | 9 | 0.0121131 | 21746-21748 | |
S | 62 | V62L | nonsyn | GtT | TtG | 743 | 8 | 0.0107672 | 21746-21748 | |
S | 62 | V62L | nonsyn | GtT | CtA | 743 | 4 | 0.00538358 | 21746-21748 | |
S | 62 | V62L | nonsyn | GtT | CtC | 743 | 3 | 0.00403769 | 21746-21748 | |
S | 62 | V62L | nonsyn | GtT | TtA | 743 | 1 | 0.00134589 | 21746-21748 | |
S | 62 | V62V | syn | gtT | gtC | 619 | 367 | 0.592892 | 21746-21748 | |
S | 62 | V62V | syn | gtT | gtG | 619 | 216 | 0.34895 | 21746-21748 | |
S | 62 | V62V | syn | gtT | gtA | 619 | 36 | 0.0581583 | 21746-21748 | |
S | 62 | V62I | nonsyn | Gtt | Att | 596 | 595 | 0.998322 | 21746-21748 | |
S | 62 | V62I | nonsyn | GtT | AtC | 596 | 1 | 0.00167785 | 21746-21748 | |
S | 62 | V62F | nonsyn | Gtt | Ttt | 93 | 92 | 0.989247 | 21746-21748 | |
S | 62 | V62F | nonsyn | GtT | TtC | 93 | 1 | 0.0107527 | 21746-21748 | |
S | 62 | V62G | nonsyn | gTt | gGt | 83 | 68 | 0.819277 | 21746-21748 | |
S | 62 | V62G | nonsyn | gTT | gGG | 83 | 10 | 0.120482 | 21746-21748 | |
S | 62 | V62G | nonsyn | gTT | gGA | 83 | 3 | 0.0361446 | 21746-21748 | |
S | 62 | V62G | nonsyn | gTT | gGC | 83 | 2 | 0.0240964 | 21746-21748 | |
S | 62 | V62A | nonsyn | gTt | gCt | 49 | 38 | 0.77551 | 21746-21748 | |
S | 62 | V62A | nonsyn | gTT | gCG | 49 | 8 | 0.163265 | 21746-21748 | |
S | 62 | V62A | nonsyn | gTT | gCC | 49 | 3 | 0.0612245 | 21746-21748 | |
S | 62 | V62del2 | del | gTT | g-- | 29 | 27 | 0.931035 | 21746-21748 | |
S | 62 | V62del2 | del | GTT | A-- | 29 | 1 | 0.0344828 | 21746-21748 | |
S | 62 | V62del2 | del | GTT | --N | 29 | 1 | 0.0344828 | 21746-21748 | |
S | 62 | V62del1 | del | gtT | gt- | 25 | 6 | 0.24 | 21746-21748 | |
S | 62 | V62del1 | del | gTt | g-t | 25 | 5 | 0.2 | 21746-21748 | |
S | 62 | V62del1 | del | Gtt | -tt | 25 | 5 | 0.2 | 21746-21748 | |
S | 62 | V62del1 | del | GTT | -NN | 25 | 3 | 0.12 | 21746-21748 | |
S | 62 | V62del1 | del | GtT | -tN | 25 | 2 | 0.08 | 21746-21748 | |
S | 62 | V62del1 | del | GtT | At- | 25 | 2 | 0.08 | 21746-21748 | |
S | 62 | V62del1 | del | GtT | -tA | 25 | 1 | 0.04 | 21746-21748 | |
S | 62 | V62del1 | del | GtT | -tC | 25 | 1 | 0.04 | 21746-21748 | |
S | 62 | V62S | nonsyn | GTT | TCG | 19 | 9 | 0.473684 | 21746-21748 | |
S | 62 | V62S | nonsyn | GTt | TCt | 19 | 7 | 0.368421 | 21746-21748 | |
S | 62 | V62S | nonsyn | GTt | AGt | 19 | 1 | 0.0526316 | 21746-21748 | |
S | 62 | V62S | nonsyn | GTT | TCC | 19 | 1 | 0.0526316 | 21746-21748 | |
S | 62 | V62S | nonsyn | GTT | AGC | 19 | 1 | 0.0526316 | 21746-21748 | |
S | 62 | V62R | nonsyn | GTT | CGG | 16 | 8 | 0.5 | 21746-21748 | |
S | 62 | V62R | nonsyn | GTT | CGA | 16 | 3 | 0.1875 | 21746-21748 | |
S | 62 | V62R | nonsyn | GTT | CGC | 16 | 2 | 0.125 | 21746-21748 | |
S | 62 | V62R | nonsyn | GTT | AGG | 16 | 2 | 0.125 | 21746-21748 | |
S | 62 | V62R | nonsyn | GTt | CGt | 16 | 1 | 0.0625 | 21746-21748 | |
S | 62 | V62D | nonsyn | gTt | gAt | 13 | 11 | 0.846154 | 21746-21748 | |
S | 62 | V62D | nonsyn | gTT | gAC | 13 | 2 | 0.153846 | 21746-21748 | |
S | 62 | V62T | nonsyn | GTT | ACA | 5 | 3 | 0.6 | 21746-21748 | |
S | 62 | V62T | nonsyn | GTT | ACG | 5 | 1 | 0.2 | 21746-21748 | |
S | 62 | V62T | nonsyn | GTt | ACt | 5 | 1 | 0.2 | 21746-21748 | |
S | 62 | V62M | nonsyn | GtT | AtG | 4 | 4 | 1 | 21746-21748 | |
S | 62 | V62H | nonsyn | GTt | CAt | 3 | 3 | 1 | 21746-21748 | |
S | 62 | V62E | nonsyn | gTT | gAG | 3 | 3 | 1 | 21746-21748 | |
S | 62 | V62P | nonsyn | GTt | CCt | 2 | 1 | 0.5 | 21746-21748 | |
S | 62 | V62P | nonsyn | GTT | CCC | 2 | 1 | 0.5 | 21746-21748 | |
S | 62 | V62K | nonsyn | GTT | AAA | 1 | 1 | 1 | 21746-21748 | |
S | 62 | V62W | nonsyn | GTT | TGG | 1 | 1 | 1 | 21746-21748 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 62 | V62del | GTT | --- | 793 | 793 | All | 0.000152 |
S | 62 | V62L | Gtt | Ctt | 718 | 743 | All | 0.000137 |
S | 62 | V62L | GtT | CtG | 9 | 743 | All | 0.000002 |
S | 62 | V62L | GtT | TtG | 8 | 743 | All | 0.000002 |
S | 62 | V62L | GtT | CtA | 4 | 743 | All | 0.000001 |
S | 62 | V62L | GtT | CtC | 3 | 743 | All | 0.000001 |
S | 62 | V62L | GtT | TtA | 1 | 743 | All | 0 |
S | 62 | V62V | gtT | gtC | 367 | 619 | All | 0.00007 |
S | 62 | V62V | gtT | gtG | 216 | 619 | All | 0.000041 |
S | 62 | V62V | gtT | gtA | 36 | 619 | All | 0.000007 |
S | 62 | V62I | Gtt | Att | 595 | 596 | All | 0.000114 |
S | 62 | V62I | GtT | AtC | 1 | 596 | All | 0 |
S | 62 | V62L | Gtt | Ctt | 221 | 221 | B.1.1.7 | 0.000198 |
S | 62 | V62V | gtT | gtG | 171 | 171 | B.1.177.82 | 0.081623 |
S | 62 | V62L | Gtt | Ctt | 163 | 163 | AY.29 | 0.002571 |
S | 62 | V62I | Gtt | Att | 154 | 154 | AY.43 | 0.000682 |
S | 62 | V62del | GTT | --- | 106 | 106 | AY.43 | 0.00047 |
S | 62 | V62I | Gtt | Att | 95 | 95 | B.1.1.7 | 0.000085 |
S | 62 | V62F | Gtt | Ttt | 92 | 93 | All | 0.000018 |
S | 62 | V62F | GtT | TtC | 1 | 93 | All | 0 |
S | 62 | V62G | gTt | gGt | 68 | 83 | All | 0.000013 |
S | 62 | V62G | gTT | gGG | 10 | 83 | All | 0.000002 |
S | 62 | V62G | gTT | gGA | 3 | 83 | All | 0.000001 |
S | 62 | V62G | gTT | gGC | 2 | 83 | All | 0 |
S | 62 | V62V | gtT | gtC | 79 | 79 | B.1.596 | 0.006884 |
S | 62 | V62I | Gtt | Att | 73 | 73 | B.1.258 | 0.004858 |
S | 62 | V62V | gtT | gtC | 70 | 70 | AY.25 | 0.000421 |
S | 62 | V62del | GTT | --- | 66 | 66 | AY.4 | 0.000103 |
S | 62 | V62del | GTT | --- | 64 | 64 | B.1.1.7 | 0.000057 |
S | 62 | V62del | GTT | --- | 55 | 55 | B.1.617.2 | 0.000207 |
S | 62 | V62V | gtT | gtC | 49 | 50 | AY.4 | 0.000076 |
S | 62 | V62V | gtT | gtA | 1 | 50 | AY.4 | 0.000002 |
S | 62 | V62A | gTt | gCt | 38 | 49 | All | 0.000007 |
S | 62 | V62A | gTT | gCG | 8 | 49 | All | 0.000002 |
S | 62 | V62A | gTT | gCC | 3 | 49 | All | 0.000001 |
S | 62 | V62L | Gtt | Ctt | 45 | 45 | AY.4 | 0.00007 |
S | 62 | V62I | Gtt | Att | 43 | 43 | AY.25 | 0.000259 |
S | 62 | V62del | GTT | --- | 43 | 43 | AY.44 | 0.000262 |
S | 62 | V62del | GTT | --- | 41 | 41 | AY.25 | 0.000247 |
S | 62 | V62V | gtT | gtC | 37 | 40 | B.1.1.7 | 0.000033 |
S | 62 | V62V | gtT | gtA | 3 | 40 | B.1.1.7 | 0.000003 |
S | 62 | V62L | Gtt | Ctt | 30 | 30 | B.1.617.2 | 0.000113 |
S | 62 | V62del2 | gTT | g-- | 27 | 29 | All | 0.000005 |
S | 62 | V62del2 | GTT | A-- | 1 | 29 | All | 0 |
S | 62 | V62del2 | GTT | --N | 1 | 29 | All | 0 |
S | 62 | V62I | Gtt | Att | 29 | 29 | B.1.1 | 0.000526 |
S | 62 | V62V | gtT | gtG | 16 | 27 | P.1 | 0.000252 |
S | 62 | V62V | gtT | gtC | 11 | 27 | P.1 | 0.000173 |
S | 62 | V62I | Gtt | Att | 26 | 26 | AY.103 | 0.000161 |
S | 62 | V62del1 | gtT | gt- | 6 | 25 | All | 0.000001 |
S | 62 | V62del1 | Gtt | -tt | 5 | 25 | All | 0.000001 |
S | 62 | V62del1 | gTt | g-t | 5 | 25 | All | 0.000001 |
S | 62 | V62del1 | GTT | -NN | 3 | 25 | All | 0.000001 |
S | 62 | V62del1 | GtT | At- | 2 | 25 | All | 0 |
S | 62 | V62del1 | GtT | -tN | 2 | 25 | All | 0 |
S | 62 | V62del1 | GtT | -tC | 1 | 25 | All | 0 |
S | 62 | V62del1 | GtT | -tA | 1 | 25 | All | 0 |
S | 62 | V62I | Gtt | Att | 24 | 24 | AY.4 | 0.000037 |
S | 62 | V62L | Gtt | Ctt | 17 | 24 | P.1 | 0.000268 |
S | 62 | V62L | GtT | TtG | 6 | 24 | P.1 | 0.000095 |
S | 62 | V62L | GtT | CtG | 1 | 24 | P.1 | 0.000016 |
S | 62 | V62I | Gtt | Att | 22 | 22 | B.1.1.214 | 0.00122 |
S | 62 | V62del | GTT | --- | 21 | 21 | AY.9 | 0.001419 |
S | 62 | V62I | Gtt | Att | 21 | 21 | B.1.1.425 | 0.954545 |
S | 62 | V62del2 | gTT | g-- | 21 | 21 | C.37 | 0.002437 |
S | 62 | V62del | GTT | --- | 20 | 20 | AY.103 | 0.000124 |
S | 62 | V62L | Gtt | Ctt | 20 | 20 | AY.47 | 0.000622 |
S | 62 | V62S | GTT | TCG | 9 | 19 | All | 0.000002 |
S | 62 | V62S | GTt | TCt | 7 | 19 | All | 0.000001 |
S | 62 | V62S | GTT | TCC | 1 | 19 | All | 0 |
S | 62 | V62S | GTT | AGC | 1 | 19 | All | 0 |
S | 62 | V62S | GTt | AGt | 1 | 19 | All | 0 |
S | 62 | V62del | GTT | --- | 19 | 19 | AY.3 | 0.000189 |
S | 62 | V62V | gtT | gtC | 16 | 19 | AY.44 | 0.000097 |
S | 62 | V62V | gtT | gtA | 3 | 19 | AY.44 | 0.000018 |
S | 62 | V62I | Gtt | Att | 17 | 17 | AY.5 | 0.000351 |
S | 62 | V62R | GTT | CGG | 8 | 16 | All | 0.000002 |
S | 62 | V62R | GTT | CGA | 3 | 16 | All | 0.000001 |
S | 62 | V62R | GTT | CGC | 2 | 16 | All | 0 |
S | 62 | V62R | GTT | AGG | 2 | 16 | All | 0 |
S | 62 | V62R | GTt | CGt | 1 | 16 | All | 0 |
S | 62 | V62F | Gtt | Ttt | 16 | 16 | AY.4 | 0.000025 |
S | 62 | V62L | Gtt | Ctt | 15 | 15 | AY.100 | 0.00069 |
S | 62 | V62del | GTT | --- | 15 | 15 | AY.102 | 0.000398 |
S | 62 | V62L | Gtt | Ctt | 15 | 15 | AY.103 | 0.000093 |
S | 62 | V62V | gtT | gtC | 9 | 15 | B.1.2 | 0.000079 |
S | 62 | V62V | gtT | gtA | 6 | 15 | B.1.2 | 0.000053 |
S | 62 | V62I | Gtt | Att | 15 | 15 | B.1.617.2 | 0.000056 |
S | 62 | V62V | gtT | gtC | 12 | 15 | B.1.617.2 | 0.000045 |
S | 62 | V62V | gtT | gtA | 2 | 15 | B.1.617.2 | 0.000008 |
S | 62 | V62V | gtT | gtG | 1 | 15 | B.1.617.2 | 0.000004 |
S | 62 | V62D | gTt | gAt | 11 | 13 | All | 0.000002 |
S | 62 | V62D | gTT | gAC | 2 | 13 | All | 0 |
S | 62 | V62L | GtT | CtG | 5 | 13 | AY.30 | 0.001979 |
S | 62 | V62L | GtT | CtA | 3 | 13 | AY.30 | 0.001187 |
S | 62 | V62L | Gtt | Ctt | 3 | 13 | AY.30 | 0.001187 |
S | 62 | V62L | GtT | CtC | 2 | 13 | AY.30 | 0.000791 |
S | 62 | V62del | GTT | --- | 12 | 12 | AY.5 | 0.000248 |
S | 62 | V62del | GTT | --- | 12 | 12 | B.1.177 | 0.000158 |
S | 62 | V62L | Gtt | Ctt | 11 | 11 | AY.25 | 0.000066 |
S | 62 | V62del | GTT | --- | 11 | 11 | AY.26 | 0.000311 |
S | 62 | V62R | GTT | CGG | 5 | 11 | AY.30 | 0.001979 |
S | 62 | V62R | GTT | CGA | 3 | 11 | AY.30 | 0.001187 |
S | 62 | V62R | GTT | CGC | 2 | 11 | AY.30 | 0.000791 |
S | 62 | V62R | GTT | AGG | 1 | 11 | AY.30 | 0.000396 |
S | 62 | V62del | GTT | --- | 11 | 11 | AY.34.1 | 0.005609 |
S | 62 | V62del | GTT | --- | 11 | 11 | AY.4.5 | 0.001182 |
S | 62 | V62F | Gtt | Ttt | 11 | 11 | AY.6 | 0.000452 |
S | 62 | V62S | GTT | TCG | 6 | 11 | P.1 | 0.000095 |
S | 62 | V62A | gTT | gCG | 6 | 11 | P.1 | 0.000095 |
S | 62 | V62A | gTt | gCt | 5 | 11 | P.1 | 0.000079 |
S | 62 | V62S | GTt | TCt | 5 | 11 | P.1 | 0.000079 |
S | 62 | V62del | GTT | --- | 10 | 10 | B.1.429 | 0.000235 |
S | 62 | V62del | GTT | --- | 9 | 9 | AY.101 | 0.004414 |
S | 62 | V62L | Gtt | Ctt | 9 | 9 | AY.44 | 0.000055 |
S | 62 | V62del | GTT | --- | 9 | 9 | AY.47 | 0.00028 |
S | 62 | V62L | Gtt | Ctt | 9 | 9 | AY.5 | 0.000186 |
S | 62 | V62L | Gtt | Ctt | 9 | 9 | B.1 | 0.000082 |
S | 62 | V62I | Gtt | Att | 9 | 9 | B.1 | 0.000082 |
S | 62 | V62del | GTT | --- | 9 | 9 | B.1 | 0.000082 |
S | 62 | V62del | GTT | --- | 9 | 9 | B.1.1 | 0.000163 |
S | 62 | V62L | Gtt | Ctt | 9 | 9 | B.1.429 | 0.000212 |
S | 62 | V62V | gtT | gtG | 4 | 8 | AY.30 | 0.001583 |
S | 62 | V62G | gTT | gGG | 4 | 8 | AY.30 | 0.001583 |
S | 62 | V62V | gtT | gtA | 3 | 8 | AY.30 | 0.001187 |
S | 62 | V62G | gTT | gGA | 3 | 8 | AY.30 | 0.001187 |
S | 62 | V62V | gtT | gtC | 1 | 8 | AY.30 | 0.000396 |
S | 62 | V62G | gTT | gGC | 1 | 8 | AY.30 | 0.000396 |
S | 62 | V62A | gTt | gCt | 8 | 8 | AY.4 | 0.000012 |
S | 62 | V62L | Gtt | Ctt | 8 | 8 | AY.4.2 | 0.000174 |
S | 62 | V62del | GTT | --- | 8 | 8 | AY.42 | 0.000322 |
S | 62 | V62V | gtT | gtC | 4 | 8 | AY.43 | 0.000018 |
S | 62 | V62V | gtT | gtG | 3 | 8 | AY.43 | 0.000013 |
S | 62 | V62V | gtT | gtA | 1 | 8 | AY.43 | 0.000004 |
S | 62 | V62V | gtT | gtC | 7 | 8 | AY.5 | 0.000145 |
S | 62 | V62V | gtT | gtA | 1 | 8 | AY.5 | 0.000021 |
S | 62 | V62del | GTT | --- | 8 | 8 | AY.98 | 0.000632 |
S | 62 | V62del | GTT | --- | 8 | 8 | B.1.177.86 | 0.001468 |
S | 62 | V62L | Gtt | Ctt | 8 | 8 | B.1.243 | 0.000557 |
S | 62 | V62G | gTt | gGt | 8 | 8 | B.1.617.2 | 0.00003 |
S | 62 | V62L | Gtt | Ctt | 8 | 8 | B.1.93 | 0.00747 |
S | 62 | V62L | Gtt | Ctt | 7 | 7 | AY.3 | 0.00007 |
S | 62 | V62V | gtT | gtC | 6 | 7 | AY.3 | 0.00006 |
S | 62 | V62V | gtT | gtA | 1 | 7 | AY.3 | 0.00001 |
S | 62 | V62G | gTt | gGt | 7 | 7 | AY.4 | 0.000011 |
S | 62 | V62G | gTt | gGt | 7 | 7 | AY.43 | 0.000031 |
S | 62 | V62del | GTT | --- | 7 | 7 | AY.46 | 0.000729 |
S | 62 | V62G | gTt | gGt | 7 | 7 | AY.69 | 0.001307 |
S | 62 | V62V | gtT | gtG | 6 | 7 | B.1.177 | 0.000079 |
S | 62 | V62V | gtT | gtC | 1 | 7 | B.1.177 | 0.000013 |
S | 62 | V62L | Gtt | Ctt | 7 | 7 | B.1.2 | 0.000062 |
S | 62 | V62del | GTT | --- | 6 | 6 | AY.100 | 0.000276 |
S | 62 | V62del | GTT | --- | 6 | 6 | AY.121 | 0.000812 |
S | 62 | V62L | Gtt | Ctt | 6 | 6 | AY.36 | 0.000889 |
S | 62 | V62del | GTT | --- | 6 | 6 | AY.39 | 0.000148 |
S | 62 | V62del | GTT | --- | 6 | 6 | AY.45 | 0.00073 |
S | 62 | V62L | Gtt | Ctt | 5 | 6 | AY.94 | 0.002213 |
S | 62 | V62L | GtT | TtA | 1 | 6 | AY.94 | 0.000443 |
S | 62 | V62F | Gtt | Ttt | 6 | 6 | B.1.1.7 | 0.000005 |
S | 62 | V62F | Gtt | Ttt | 6 | 6 | B.1.617.2 | 0.000023 |
S | 62 | V62del | GTT | --- | 6 | 6 | C.37 | 0.000696 |
S | 62 | V62F | Gtt | Ttt | 6 | 6 | P.1 | 0.000095 |
S | 62 | V62del | GTT | --- | 6 | 6 | P.1 | 0.000095 |
S | 62 | V62T | GTT | ACA | 3 | 5 | All | 0.000001 |
S | 62 | V62T | GTt | ACt | 1 | 5 | All | 0 |
S | 62 | V62T | GTT | ACG | 1 | 5 | All | 0 |
S | 62 | V62V | gtT | gtA | 3 | 5 | AY.119 | 0.000106 |
S | 62 | V62V | gtT | gtC | 2 | 5 | AY.119 | 0.000071 |
S | 62 | V62V | gtT | gtC | 5 | 5 | AY.26 | 0.000142 |
S | 62 | V62del | GTT | --- | 5 | 5 | AY.33 | 0.000334 |
S | 62 | V62L | Gtt | Ctt | 5 | 5 | AY.43 | 0.000022 |
S | 62 | V62I | Gtt | Att | 5 | 5 | AY.44 | 0.00003 |
S | 62 | V62A | gTt | gCt | 5 | 5 | AY.5 | 0.000103 |
S | 62 | V62F | Gtt | Ttt | 5 | 5 | AY.69 | 0.000933 |
S | 62 | V62F | Gtt | Ttt | 5 | 5 | B.1 | 0.000046 |
S | 62 | V62L | Gtt | Ctt | 5 | 5 | B.1.160 | 0.000156 |
S | 62 | V62L | Gtt | Ctt | 5 | 5 | B.1.177 | 0.000066 |
S | 62 | V62del | GTT | --- | 5 | 5 | B.1.2 | 0.000044 |
S | 62 | V62I | Gtt | Att | 5 | 5 | B.1.351 | 0.000149 |
S | 62 | V62V | gtT | gtC | 5 | 5 | B.1.351 | 0.000149 |
S | 62 | V62L | Gtt | Ctt | 5 | 5 | B.1.470 | 0.007022 |
S | 62 | V62del | GTT | --- | 4 | 4 | 0.222222 | |
S | 62 | V62M | GtT | AtG | 4 | 4 | All | 0.000001 |
S | 62 | V62del | GTT | --- | 4 | 4 | AY.119 | 0.000141 |
S | 62 | V62L | Gtt | Ctt | 4 | 4 | AY.119 | 0.000141 |
S | 62 | V62del | GTT | --- | 4 | 4 | AY.20 | 0.000155 |
S | 62 | V62F | Gtt | Ttt | 4 | 4 | AY.44 | 0.000024 |
S | 62 | V62del | GTT | --- | 4 | 4 | AY.61 | 0.000419 |
S | 62 | V62V | gtT | gtC | 4 | 4 | AY.7.1 | 0.000451 |
S | 62 | V62del | GTT | --- | 4 | 4 | AY.9.2 | 0.000147 |
S | 62 | V62del | GTT | --- | 4 | 4 | AY.95 | 0.003044 |
S | 62 | V62del | GTT | --- | 4 | 4 | AY.98.1 | 0.000194 |
S | 62 | V62del | GTT | --- | 4 | 4 | AY.99.2 | 0.000369 |
S | 62 | V62V | gtT | gtG | 4 | 4 | B.1.1.33 | 0.001684 |
S | 62 | V62G | gTT | gGG | 2 | 4 | B.1.1.33 | 0.000842 |
S | 62 | V62G | gTt | gGt | 2 | 4 | B.1.1.33 | 0.000842 |
S | 62 | V62L | Gtt | Ctt | 4 | 4 | B.1.1.72 | 0.121212 |
S | 62 | V62del | GTT | --- | 4 | 4 | B.1.160 | 0.000125 |
S | 62 | V62del | GTT | --- | 4 | 4 | B.1.221 | 0.000284 |
S | 62 | V62L | Gtt | Ctt | 4 | 4 | B.1.258.17 | 0.000416 |
S | 62 | V62V | gtT | gtC | 4 | 4 | B.1.400 | 0.001716 |
S | 62 | V62V | gtT | gtC | 2 | 4 | B.1.429 | 0.000047 |
S | 62 | V62V | gtT | gtA | 1 | 4 | B.1.429 | 0.000024 |
S | 62 | V62V | gtT | gtG | 1 | 4 | B.1.429 | 0.000024 |
S | 62 | V62A | gTt | gCt | 3 | 4 | B.1.617.2 | 0.000011 |
S | 62 | V62A | gTT | gCC | 1 | 4 | B.1.617.2 | 0.000004 |
S | 62 | V62L | Gtt | Ctt | 4 | 4 | B.1.619.1 | 0.002566 |
S | 62 | V62I | Gtt | Att | 4 | 4 | P.2 | 0.000747 |
S | 62 | V62E | gTT | gAG | 3 | 3 | All | 0.000001 |
S | 62 | V62H | GTt | CAt | 3 | 3 | All | 0.000001 |
S | 62 | V62L | Gtt | Ctt | 3 | 3 | AY.102 | 0.00008 |
S | 62 | V62del | GTT | --- | 3 | 3 | AY.113 | 0.000427 |
S | 62 | V62del | GTT | --- | 3 | 3 | AY.118 | 0.000188 |
S | 62 | V62del | GTT | --- | 3 | 3 | AY.12 | 0.000948 |
S | 62 | V62del | GTT | --- | 3 | 3 | AY.120 | 0.000112 |
S | 62 | V62I | Gtt | Att | 3 | 3 | AY.23 | 0.000209 |
S | 62 | V62del | GTT | --- | 3 | 3 | AY.38 | 0.001498 |
S | 62 | V62del | GTT | --- | 3 | 3 | AY.39.1 | 0.000119 |
S | 62 | V62D | gTt | gAt | 3 | 3 | AY.43 | 0.000013 |
S | 62 | V62del1 | gtT | gt- | 2 | 3 | AY.43 | 0.000009 |
S | 62 | V62del1 | GtT | At- | 1 | 3 | AY.43 | 0.000004 |
S | 62 | V62V | gtT | gtC | 2 | 3 | AY.46 | 0.000208 |
S | 62 | V62V | gtT | gtA | 1 | 3 | AY.46 | 0.000104 |
S | 62 | V62del | GTT | --- | 3 | 3 | AY.54 | 0.000286 |
S | 62 | V62del | GTT | --- | 3 | 3 | AY.6 | 0.000123 |
S | 62 | V62V | gtT | gtC | 2 | 3 | AY.6 | 0.000082 |
S | 62 | V62V | gtT | gtA | 1 | 3 | AY.6 | 0.000041 |
S | 62 | V62del | GTT | --- | 3 | 3 | AY.75 | 0.000168 |
S | 62 | V62del | GTT | --- | 3 | 3 | AY.85 | 0.001282 |
S | 62 | V62del | GTT | --- | 3 | 3 | AY.9.1 | 0.000251 |
S | 62 | V62V | gtT | gtC | 2 | 3 | B.1 | 0.000018 |
S | 62 | V62V | gtT | gtG | 1 | 3 | B.1 | 0.000009 |
S | 62 | V62G | gTt | gGt | 3 | 3 | B.1.1 | 0.000054 |
S | 62 | V62R | GTT | AGG | 1 | 3 | B.1.1.33 | 0.000421 |
S | 62 | V62R | GTt | CGt | 1 | 3 | B.1.1.33 | 0.000421 |
S | 62 | V62R | GTT | CGG | 1 | 3 | B.1.1.33 | 0.000421 |
S | 62 | V62G | gTt | gGt | 3 | 3 | B.1.1.7 | 0.000003 |
S | 62 | V62F | Gtt | Ttt | 3 | 3 | B.1.429 | 0.000071 |
S | 62 | V62L | Gtt | Ctt | 1 | 3 | B.1.561 | 0.000397 |
S | 62 | V62L | GtT | CtA | 1 | 3 | B.1.561 | 0.000397 |
S | 62 | V62L | GtT | CtG | 1 | 3 | B.1.561 | 0.000397 |
S | 62 | V62I | Gtt | Att | 3 | 3 | B.1.596 | 0.000261 |
S | 62 | V62L | Gtt | Ctt | 3 | 3 | C.37 | 0.000348 |
S | 62 | V62F | Gtt | Ttt | 3 | 3 | D.2 | 0.000225 |
S | 62 | V62G | gTT | gGG | 3 | 3 | P.1 | 0.000047 |
S | 62 | V62L | Gtt | Ctt | 3 | 3 | P.2 | 0.00056 |
S | 62 | V62E | gTT | gAG | 2 | 2 | 0.111111 | |
S | 62 | V62D | gTT | gAC | 2 | 2 | 0.111111 | |
S | 62 | V62P | GTt | CCt | 1 | 2 | All | 0 |
S | 62 | V62P | GTT | CCC | 1 | 2 | All | 0 |
S | 62 | V62L | Gtt | Ctt | 2 | 2 | AU.2 | 0.004843 |
S | 62 | V62V | gtT | gtC | 2 | 2 | AY.102 | 0.000053 |
S | 62 | V62del1 | GTT | -NN | 2 | 2 | AY.102 | 0.000053 |
S | 62 | V62G | gTt | gGt | 2 | 2 | AY.102 | 0.000053 |
S | 62 | V62G | gTt | gGt | 2 | 2 | AY.103 | 0.000012 |
S | 62 | V62V | gtT | gtA | 1 | 2 | AY.103 | 0.000006 |
S | 62 | V62V | gtT | gtC | 1 | 2 | AY.103 | 0.000006 |
S | 62 | V62del | GTT | --- | 2 | 2 | AY.108 | 0.002205 |
S | 62 | V62L | Gtt | Ctt | 2 | 2 | AY.117 | 0.000169 |
S | 62 | V62del | GTT | --- | 2 | 2 | AY.117 | 0.000169 |
S | 62 | V62del1 | gtT | gt- | 1 | 2 | AY.25 | 0.000006 |
S | 62 | V62del1 | gTt | g-t | 1 | 2 | AY.25 | 0.000006 |
S | 62 | V62F | Gtt | Ttt | 1 | 2 | AY.26 | 0.000028 |
S | 62 | V62S | GTT | TCC | 1 | 2 | AY.26 | 0.000028 |
S | 62 | V62S | GTt | TCt | 1 | 2 | AY.26 | 0.000028 |
S | 62 | V62L | GtT | CtC | 1 | 2 | AY.26 | 0.000028 |
S | 62 | V62P | GTT | CCC | 1 | 2 | AY.26 | 0.000028 |
S | 62 | V62F | GtT | TtC | 1 | 2 | AY.26 | 0.000028 |
S | 62 | V62L | Gtt | Ctt | 1 | 2 | AY.26 | 0.000028 |
S | 62 | V62P | GTt | CCt | 1 | 2 | AY.26 | 0.000028 |
S | 62 | V62G | gTt | gGt | 2 | 2 | AY.3 | 0.00002 |
S | 62 | V62T | GTt | ACt | 1 | 2 | AY.3 | 0.00001 |
S | 62 | V62T | GTT | ACA | 1 | 2 | AY.3 | 0.00001 |
S | 62 | V62del | GTT | --- | 2 | 2 | AY.3.1 | 0.000171 |
S | 62 | V62L | Gtt | Ctt | 2 | 2 | AY.39 | 0.000049 |
S | 62 | V62V | gtT | gtC | 2 | 2 | AY.39 | 0.000049 |
S | 62 | V62L | Gtt | Ctt | 2 | 2 | AY.39.1 | 0.000079 |
S | 62 | V62I | Gtt | Att | 2 | 2 | AY.39.1 | 0.000079 |
S | 62 | V62del1 | Gtt | -tt | 1 | 2 | AY.4 | 0.000002 |
S | 62 | V62del1 | GtT | -tN | 1 | 2 | AY.4 | 0.000002 |
S | 62 | V62V | gtT | gtC | 2 | 2 | AY.4.2 | 0.000043 |
S | 62 | V62H | GTt | CAt | 2 | 2 | AY.43 | 0.000009 |
S | 62 | V62del | GTT | --- | 2 | 2 | AY.46.2 | 0.001271 |
S | 62 | V62L | Gtt | Ctt | 2 | 2 | AY.46.3 | 0.001867 |
S | 62 | V62V | gtT | gtC | 1 | 2 | AY.47 | 0.000031 |
S | 62 | V62V | gtT | gtA | 1 | 2 | AY.47 | 0.000031 |
S | 62 | V62del | GTT | --- | 2 | 2 | AY.52 | 0.001629 |
S | 62 | V62A | gTt | gCt | 2 | 2 | AY.61 | 0.00021 |
S | 62 | V62del1 | gTt | g-t | 1 | 2 | AY.61 | 0.000105 |
S | 62 | V62del1 | gtT | gt- | 1 | 2 | AY.61 | 0.000105 |
S | 62 | V62V | gtT | gtA | 1 | 2 | AY.69 | 0.000187 |
S | 62 | V62V | gtT | gtC | 1 | 2 | AY.69 | 0.000187 |
S | 62 | V62del | GTT | --- | 2 | 2 | AY.7.2 | 0.001119 |
S | 62 | V62del | GTT | --- | 2 | 2 | AY.71 | 0.00095 |
S | 62 | V62del | GTT | --- | 2 | 2 | AY.75.1 | 0.000361 |
S | 62 | V62V | gtT | gtC | 2 | 2 | AY.9 | 0.000135 |
S | 62 | V62V | gtT | gtC | 2 | 2 | AY.9.2 | 0.000073 |
S | 62 | V62del | GTT | --- | 2 | 2 | AY.94 | 0.000885 |
S | 62 | V62L | Gtt | Ctt | 2 | 2 | AY.99.2 | 0.000184 |
S | 62 | V62L | Gtt | Ctt | 2 | 2 | B.1.1 | 0.000036 |
S | 62 | V62F | Gtt | Ttt | 2 | 2 | B.1.1 | 0.000036 |
S | 62 | V62V | gtT | gtC | 1 | 2 | B.1.1 | 0.000018 |
S | 62 | V62V | gtT | gtG | 1 | 2 | B.1.1 | 0.000018 |
S | 62 | V62L | Gtt | Ctt | 2 | 2 | B.1.1.214 | 0.000111 |
S | 62 | V62V | gtT | gtC | 2 | 2 | B.1.1.311 | 0.000716 |
S | 62 | V62L | GtT | CtG | 1 | 2 | B.1.1.33 | 0.000421 |
S | 62 | V62L | Gtt | Ctt | 1 | 2 | B.1.1.33 | 0.000421 |
S | 62 | V62V | gtT | gtC | 2 | 2 | B.1.1.380 | 0.019608 |
S | 62 | V62L | Gtt | Ctt | 2 | 2 | B.1.1.519 | 0.000079 |
S | 62 | V62A | gTT | gCC | 1 | 2 | B.1.1.7 | 0.000001 |
S | 62 | V62A | gTt | gCt | 1 | 2 | B.1.1.7 | 0.000001 |
S | 62 | V62del | GTT | --- | 2 | 2 | B.1.177.21 | 0.000153 |
S | 62 | V62del | GTT | --- | 2 | 2 | B.1.177.81 | 0.000379 |
S | 62 | V62A | gTT | gCC | 1 | 2 | B.1.2 | 0.000009 |
S | 62 | V62A | gTt | gCt | 1 | 2 | B.1.2 | 0.000009 |
S | 62 | V62I | Gtt | Att | 2 | 2 | B.1.221 | 0.000142 |
S | 62 | V62del | GTT | --- | 2 | 2 | B.1.258 | 0.000133 |
S | 62 | V62del | GTT | --- | 2 | 2 | B.1.351 | 0.000059 |
S | 62 | V62F | Gtt | Ttt | 2 | 2 | B.1.351 | 0.000059 |
S | 62 | V62I | Gtt | Att | 2 | 2 | B.1.369 | 0.00057 |
S | 62 | V62del | GTT | --- | 2 | 2 | B.1.525 | 0.000226 |
S | 62 | V62V | gtT | gtC | 2 | 2 | B.1.541 | 0.00885 |
S | 62 | V62V | gtT | gtG | 1 | 2 | B.1.561 | 0.000397 |
S | 62 | V62V | gtT | gtA | 1 | 2 | B.1.561 | 0.000397 |
S | 62 | V62del1 | Gtt | -tt | 1 | 2 | B.1.617.2 | 0.000004 |
S | 62 | V62del1 | GtT | -tC | 1 | 2 | B.1.617.2 | 0.000004 |
S | 62 | V62del | GTT | --- | 2 | 2 | B.1.637 | 0.000146 |
S | 62 | V62A | gTt | gCt | 2 | 2 | D.2 | 0.00015 |
S | 62 | V62V | gtT | gtG | 2 | 2 | P.7 | 0.008734 |
S | 62 | V62S | GTT | TCG | 1 | 2 | P.7 | 0.004367 |
S | 62 | V62A | gTt | gCt | 1 | 2 | P.7 | 0.004367 |
S | 62 | V62A | gTT | gCG | 1 | 2 | P.7 | 0.004367 |
S | 62 | V62S | GTt | TCt | 1 | 2 | P.7 | 0.004367 |
S | 62 | V62del | GTT | --- | 2 | 2 | R.1 | 0.00018 |
S | 62 | V62F | Gtt | Ttt | 1 | 1 | 0.055556 | |
S | 62 | V62V | gtT | gtC | 1 | 1 | A.1 | 0.000282 |
S | 62 | V62G | gTt | gGt | 1 | 1 | A.2 | 0.000662 |
S | 62 | V62V | gtT | gtC | 1 | 1 | A.2 | 0.000662 |
S | 62 | V62G | gTt | gGt | 1 | 1 | A.2.4 | 0.003367 |
S | 62 | V62W | GTT | TGG | 1 | 1 | All | 0 |
S | 62 | V62K | GTT | AAA | 1 | 1 | All | 0 |
S | 62 | V62del | GTT | --- | 1 | 1 | AU.1 | 0.001266 |
S | 62 | V62I | Gtt | Att | 1 | 1 | AY.100 | 0.000046 |
S | 62 | V62del2 | gTT | g-- | 1 | 1 | AY.100 | 0.000046 |
S | 62 | V62G | gTt | gGt | 1 | 1 | AY.101 | 0.00049 |
S | 62 | V62A | gTt | gCt | 1 | 1 | AY.103 | 0.000006 |
S | 62 | V62del1 | GTT | -NN | 1 | 1 | AY.103 | 0.000006 |
S | 62 | V62M | GtT | AtG | 1 | 1 | AY.103 | 0.000006 |
S | 62 | V62D | gTt | gAt | 1 | 1 | AY.103 | 0.000006 |
S | 62 | V62L | Gtt | Ctt | 1 | 1 | AY.105 | 0.000643 |
S | 62 | V62F | Gtt | Ttt | 1 | 1 | AY.107 | 0.000466 |
S | 62 | V62V | gtT | gtG | 1 | 1 | AY.107 | 0.000466 |
S | 62 | V62del1 | GtT | -tA | 1 | 1 | AY.108 | 0.001103 |
S | 62 | V62F | Gtt | Ttt | 1 | 1 | AY.110 | 0.000113 |
S | 62 | V62del1 | gtT | gt- | 1 | 1 | AY.111 | 0.000183 |
S | 62 | V62del | GTT | --- | 1 | 1 | AY.111 | 0.000183 |
S | 62 | V62H | GTt | CAt | 1 | 1 | AY.113 | 0.000142 |
S | 62 | V62L | Gtt | Ctt | 1 | 1 | AY.113 | 0.000142 |
S | 62 | V62D | gTt | gAt | 1 | 1 | AY.113 | 0.000142 |
S | 62 | V62I | Gtt | Att | 1 | 1 | AY.113 | 0.000142 |
S | 62 | V62E | gTT | gAG | 1 | 1 | AY.116.1 | 0.000311 |
S | 62 | V62I | Gtt | Att | 1 | 1 | AY.117 | 0.000085 |
S | 62 | V62A | gTt | gCt | 1 | 1 | AY.118 | 0.000063 |
S | 62 | V62I | Gtt | Att | 1 | 1 | AY.119 | 0.000035 |
S | 62 | V62F | Gtt | Ttt | 1 | 1 | AY.119 | 0.000035 |
S | 62 | V62A | gTt | gCt | 1 | 1 | AY.119 | 0.000035 |
S | 62 | V62I | Gtt | Att | 1 | 1 | AY.120 | 0.000037 |
S | 62 | V62L | Gtt | Ctt | 1 | 1 | AY.120 | 0.000037 |
S | 62 | V62I | Gtt | Att | 1 | 1 | AY.121 | 0.000135 |
S | 62 | V62del | GTT | --- | 1 | 1 | AY.14 | 0.000088 |
S | 62 | V62I | Gtt | Att | 1 | 1 | AY.16 | 0.00038 |
S | 62 | V62D | gTt | gAt | 1 | 1 | AY.16 | 0.00038 |
S | 62 | V62del1 | gTt | g-t | 1 | 1 | AY.16 | 0.00038 |
S | 62 | V62F | Gtt | Ttt | 1 | 1 | AY.16 | 0.00038 |
S | 62 | V62G | gTt | gGt | 1 | 1 | AY.20 | 0.000039 |
S | 62 | V62L | Gtt | Ctt | 1 | 1 | AY.20 | 0.000039 |
S | 62 | V62V | gtT | gtC | 1 | 1 | AY.20 | 0.000039 |
S | 62 | V62I | Gtt | Att | 1 | 1 | AY.22 | 0.002092 |
S | 62 | V62L | Gtt | Ctt | 1 | 1 | AY.23 | 0.00007 |
S | 62 | V62V | gtT | gtG | 1 | 1 | AY.23 | 0.00007 |
S | 62 | V62G | gTt | gGt | 1 | 1 | AY.23 | 0.00007 |
S | 62 | V62del | GTT | --- | 1 | 1 | AY.24 | 0.000431 |
S | 62 | V62G | gTt | gGt | 1 | 1 | AY.24 | 0.000431 |
S | 62 | V62I | Gtt | Att | 1 | 1 | AY.24 | 0.000431 |
S | 62 | V62G | gTt | gGt | 1 | 1 | AY.25 | 0.000006 |
S | 62 | V62A | gTt | gCt | 1 | 1 | AY.25 | 0.000006 |
S | 62 | V62I | Gtt | Att | 1 | 1 | AY.26 | 0.000028 |
S | 62 | V62G | gTt | gGt | 1 | 1 | AY.29 | 0.000016 |
S | 62 | V62L | Gtt | Ctt | 1 | 1 | AY.29.1 | 0.000221 |
S | 62 | V62I | Gtt | Att | 1 | 1 | AY.3 | 0.00001 |
S | 62 | V62F | Gtt | Ttt | 1 | 1 | AY.3 | 0.00001 |
S | 62 | V62I | GtT | AtC | 1 | 1 | AY.30 | 0.000396 |
S | 62 | V62M | GtT | AtG | 1 | 1 | AY.30 | 0.000396 |
S | 62 | V62S | GTT | AGC | 1 | 1 | AY.30 | 0.000396 |
S | 62 | V62del | GTT | --- | 1 | 1 | AY.30 | 0.000396 |
S | 62 | V62I | Gtt | Att | 1 | 1 | AY.32 | 0.000532 |
S | 62 | V62V | gtT | gtC | 1 | 1 | AY.33 | 0.000067 |
S | 62 | V62del | GTT | --- | 1 | 1 | AY.34 | 0.000097 |
S | 62 | V62V | gtT | gtA | 1 | 1 | AY.34.1 | 0.00051 |
S | 62 | V62del2 | gTT | g-- | 1 | 1 | AY.34.1 | 0.00051 |
S | 62 | V62G | gTt | gGt | 1 | 1 | AY.34.1 | 0.00051 |
S | 62 | V62V | gtT | gtC | 1 | 1 | AY.36 | 0.000148 |
S | 62 | V62I | Gtt | Att | 1 | 1 | AY.39 | 0.000025 |
S | 62 | V62del2 | GTT | --N | 1 | 1 | AY.39.2 | 0.001541 |
S | 62 | V62del | GTT | --- | 1 | 1 | AY.39.2 | 0.001541 |
S | 62 | V62D | gTt | gAt | 1 | 1 | AY.4 | 0.000002 |
S | 62 | V62del | GTT | --- | 1 | 1 | AY.4.2 | 0.000022 |
S | 62 | V62F | Gtt | Ttt | 1 | 1 | AY.4.2 | 0.000022 |
S | 62 | V62del | GTT | --- | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 62 | V62F | Gtt | Ttt | 1 | 1 | AY.4.3 | 0.000842 |
S | 62 | V62del | GTT | --- | 1 | 1 | AY.4.4 | 0.000409 |
S | 62 | V62I | Gtt | Att | 1 | 1 | AY.4.5 | 0.000107 |
S | 62 | V62L | Gtt | Ctt | 1 | 1 | AY.41 | 0.000294 |
S | 62 | V62G | gTt | gGt | 1 | 1 | AY.41 | 0.000294 |
S | 62 | V62G | gTt | gGt | 1 | 1 | AY.42 | 0.00004 |
S | 62 | V62L | Gtt | Ctt | 1 | 1 | AY.42 | 0.00004 |
S | 62 | V62T | GTT | ACA | 1 | 1 | AY.43 | 0.000004 |
S | 62 | V62F | Gtt | Ttt | 1 | 1 | AY.43 | 0.000004 |
S | 62 | V62D | gTt | gAt | 1 | 1 | AY.44 | 0.000006 |
S | 62 | V62L | Gtt | Ctt | 1 | 1 | AY.46 | 0.000104 |
S | 62 | V62V | gtT | gtC | 1 | 1 | AY.46.5 | 0.000198 |
S | 62 | V62del | GTT | --- | 1 | 1 | AY.46.5 | 0.000198 |
S | 62 | V62F | Gtt | Ttt | 1 | 1 | AY.46.5 | 0.000198 |
S | 62 | V62del | GTT | --- | 1 | 1 | AY.46.6 | 0.000072 |
S | 62 | V62I | Gtt | Att | 1 | 1 | AY.46.6 | 0.000072 |
S | 62 | V62D | gTt | gAt | 1 | 1 | AY.5 | 0.000021 |
S | 62 | V62F | Gtt | Ttt | 1 | 1 | AY.5 | 0.000021 |
S | 62 | V62del2 | gTT | g-- | 1 | 1 | AY.5 | 0.000021 |
S | 62 | V62del | GTT | --- | 1 | 1 | AY.5.3 | 0.000337 |
S | 62 | V62del | GTT | --- | 1 | 1 | AY.5.4 | 0.000277 |
S | 62 | V62I | Gtt | Att | 1 | 1 | AY.51 | 0.000909 |
S | 62 | V62del | GTT | --- | 1 | 1 | AY.59 | 0.00053 |
S | 62 | V62A | gTt | gCt | 1 | 1 | AY.59 | 0.00053 |
S | 62 | V62L | Gtt | Ctt | 1 | 1 | AY.6 | 0.000041 |
S | 62 | V62del | GTT | --- | 1 | 1 | AY.60 | 0.000938 |
S | 62 | V62G | gTt | gGt | 1 | 1 | AY.61 | 0.000105 |
S | 62 | V62I | Gtt | Att | 1 | 1 | AY.64 | 0.000595 |
S | 62 | V62del | GTT | --- | 1 | 1 | AY.64 | 0.000595 |
S | 62 | V62del | GTT | --- | 1 | 1 | AY.67 | 0.000464 |
S | 62 | V62del | GTT | --- | 1 | 1 | AY.68 | 0.000274 |
S | 62 | V62I | Gtt | Att | 1 | 1 | AY.69 | 0.000187 |
S | 62 | V62A | gTt | gCt | 1 | 1 | AY.69 | 0.000187 |
S | 62 | V62L | Gtt | Ctt | 1 | 1 | AY.69 | 0.000187 |
S | 62 | V62D | gTt | gAt | 1 | 1 | AY.69 | 0.000187 |
S | 62 | V62V | gtT | gtC | 1 | 1 | AY.7 | 0.000196 |
S | 62 | V62I | Gtt | Att | 1 | 1 | AY.7.1 | 0.000113 |
S | 62 | V62L | Gtt | Ctt | 1 | 1 | AY.7.2 | 0.000559 |
S | 62 | V62G | gTt | gGt | 1 | 1 | AY.7.2 | 0.000559 |
S | 62 | V62del | GTT | --- | 1 | 1 | AY.70 | 0.000209 |
S | 62 | V62del | GTT | --- | 1 | 1 | AY.72 | 0.001361 |
S | 62 | V62del | GTT | --- | 1 | 1 | AY.73 | 0.000665 |
S | 62 | V62del | GTT | --- | 1 | 1 | AY.74 | 0.000116 |
S | 62 | V62L | Gtt | Ctt | 1 | 1 | AY.74 | 0.000116 |
S | 62 | V62I | Gtt | Att | 1 | 1 | AY.74 | 0.000116 |
S | 62 | V62I | Gtt | Att | 1 | 1 | AY.84 | 0.000437 |
S | 62 | V62del | GTT | --- | 1 | 1 | AY.84 | 0.000437 |
S | 62 | V62G | gTT | gGC | 1 | 1 | AY.85 | 0.000427 |
S | 62 | V62V | gtT | gtA | 1 | 1 | AY.85 | 0.000427 |
S | 62 | V62V | gtT | gtC | 1 | 1 | AY.87 | 0.000833 |
S | 62 | V62del1 | GtT | -tN | 1 | 1 | AY.9 | 0.000068 |
S | 62 | V62G | gTt | gGt | 1 | 1 | AY.9 | 0.000068 |
S | 62 | V62I | Gtt | Att | 1 | 1 | AY.9 | 0.000068 |
S | 62 | V62F | Gtt | Ttt | 1 | 1 | AY.9.1 | 0.000084 |
S | 62 | V62del2 | gTT | g-- | 1 | 1 | AY.9.2 | 0.000037 |
S | 62 | V62I | Gtt | Att | 1 | 1 | AY.9.2 | 0.000037 |
S | 62 | V62del | GTT | --- | 1 | 1 | AY.92 | 0.000287 |
S | 62 | V62G | gTt | gGt | 1 | 1 | AY.94 | 0.000443 |
S | 62 | V62F | Gtt | Ttt | 1 | 1 | AY.94 | 0.000443 |
S | 62 | V62G | gTt | gGt | 1 | 1 | AY.95 | 0.000761 |
S | 62 | V62del1 | Gtt | -tt | 1 | 1 | AY.96 | 0.002075 |
S | 62 | V62L | Gtt | Ctt | 1 | 1 | AY.98 | 0.000079 |
S | 62 | V62L | Gtt | Ctt | 1 | 1 | AY.98.1 | 0.000048 |
S | 62 | V62V | gtT | gtA | 1 | 1 | AY.98.1 | 0.000048 |
S | 62 | V62F | Gtt | Ttt | 1 | 1 | AY.98.1 | 0.000048 |
S | 62 | V62del | GTT | --- | 1 | 1 | AY.99 | 0.001049 |
S | 62 | V62F | Gtt | Ttt | 1 | 1 | AY.99.2 | 0.000092 |
S | 62 | V62G | gTt | gGt | 1 | 1 | B.1 | 0.000009 |
S | 62 | V62del2 | GTT | A-- | 1 | 1 | B.1 | 0.000009 |
S | 62 | V62del1 | gTt | g-t | 1 | 1 | B.1 | 0.000009 |
S | 62 | V62del1 | Gtt | -tt | 1 | 1 | B.1.1 | 0.000018 |
S | 62 | V62A | gTt | gCt | 1 | 1 | B.1.1 | 0.000018 |
S | 62 | V62T | GTT | ACA | 1 | 1 | B.1.1 | 0.000018 |
S | 62 | V62G | gTt | gGt | 1 | 1 | B.1.1.101 | 0.01 |
S | 62 | V62del | GTT | --- | 1 | 1 | B.1.1.118 | 0.010204 |
S | 62 | V62V | gtT | gtC | 1 | 1 | B.1.1.148 | 0.008772 |
S | 62 | V62V | gtT | gtC | 1 | 1 | B.1.1.170 | 0.001247 |
S | 62 | V62del | GTT | --- | 1 | 1 | B.1.1.216 | 0.00089 |
S | 62 | V62I | Gtt | Att | 1 | 1 | B.1.1.219 | 0.005 |
S | 62 | V62I | Gtt | Att | 1 | 1 | B.1.1.277 | 0.000759 |
S | 62 | V62S | GTT | TCG | 1 | 1 | B.1.1.28 | 0.000311 |
S | 62 | V62M | GtT | AtG | 1 | 1 | B.1.1.28 | 0.000311 |
S | 62 | V62T | GTT | ACG | 1 | 1 | B.1.1.28 | 0.000311 |
S | 62 | V62L | GtT | TtG | 1 | 1 | B.1.1.28 | 0.000311 |
S | 62 | V62K | GTT | AAA | 1 | 1 | B.1.1.284 | 0.000107 |
S | 62 | V62del | GTT | --- | 1 | 1 | B.1.1.306 | 0.000438 |
S | 62 | V62L | Gtt | Ctt | 1 | 1 | B.1.1.306 | 0.000438 |
S | 62 | V62del | GTT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
S | 62 | V62I | Gtt | Att | 1 | 1 | B.1.1.311 | 0.000358 |
S | 62 | V62del | GTT | --- | 1 | 1 | B.1.1.312 | 0.001912 |
S | 62 | V62del | GTT | --- | 1 | 1 | B.1.1.318 | 0.000302 |
S | 62 | V62I | Gtt | Att | 1 | 1 | B.1.1.33 | 0.000421 |
S | 62 | V62M | GtT | AtG | 1 | 1 | B.1.1.33 | 0.000421 |
S | 62 | V62S | GTt | AGt | 1 | 1 | B.1.1.33 | 0.000421 |
S | 62 | V62del | GTT | --- | 1 | 1 | B.1.1.361 | 0.045455 |
S | 62 | V62L | Gtt | Ctt | 1 | 1 | B.1.1.39 | 0.00051 |
S | 62 | V62I | Gtt | Att | 1 | 1 | B.1.1.432 | 0.001266 |
S | 62 | V62del2 | gTT | g-- | 1 | 1 | B.1.1.434 | 0.000349 |
S | 62 | V62I | Gtt | Att | 1 | 1 | B.1.1.46 | 0.004367 |
S | 62 | V62I | Gtt | Att | 1 | 1 | B.1.1.519 | 0.00004 |
S | 62 | V62L | Gtt | Ctt | 1 | 1 | B.1.1.63 | 0.000386 |
S | 62 | V62del1 | gTt | g-t | 1 | 1 | B.1.1.7 | 0.000001 |
S | 62 | V62del2 | gTT | g-- | 1 | 1 | B.1.1.7 | 0.000001 |
S | 62 | V62del | GTT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
S | 62 | V62F | Gtt | Ttt | 1 | 1 | B.1.160 | 0.000031 |
S | 62 | V62del | GTT | --- | 1 | 1 | B.1.160.32 | 0.004292 |
S | 62 | V62I | Gtt | Att | 1 | 1 | B.1.167 | 0.007812 |
S | 62 | V62del | GTT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
S | 62 | V62V | gtT | gtA | 1 | 1 | B.1.177.16 | 0.000664 |
S | 62 | V62del | GTT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
S | 62 | V62F | Gtt | Ttt | 1 | 1 | B.1.177.17 | 0.000821 |
S | 62 | V62del | GTT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
S | 62 | V62L | Gtt | Ctt | 1 | 1 | B.1.177.33 | 0.001645 |
S | 62 | V62del | GTT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
S | 62 | V62I | Gtt | Att | 1 | 1 | B.1.177.4 | 0.000211 |
S | 62 | V62V | gtT | gtC | 1 | 1 | B.1.177.43 | 0.001477 |
S | 62 | V62del | GTT | --- | 1 | 1 | B.1.177.51 | 0.004566 |
S | 62 | V62del | GTT | --- | 1 | 1 | B.1.177.56 | 0.000668 |
S | 62 | V62G | gTt | gGt | 1 | 1 | B.1.177.57 | 0.000281 |
S | 62 | V62del | GTT | --- | 1 | 1 | B.1.177.63 | 0.002703 |
S | 62 | V62del | GTT | --- | 1 | 1 | B.1.177.77 | 0.000726 |
S | 62 | V62del | GTT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
S | 62 | V62del | GTT | --- | 1 | 1 | B.1.179 | 0.003759 |
S | 62 | V62A | gTt | gCt | 1 | 1 | B.1.206 | 0.000816 |
S | 62 | V62F | Gtt | Ttt | 1 | 1 | B.1.236 | 0.002053 |
S | 62 | V62del | GTT | --- | 1 | 1 | B.1.239 | 0.001221 |
S | 62 | V62del1 | Gtt | -tt | 1 | 1 | B.1.247 | 0.014925 |
S | 62 | V62L | Gtt | Ctt | 1 | 1 | B.1.258 | 0.000067 |
S | 62 | V62V | gtT | gtC | 1 | 1 | B.1.258 | 0.000067 |
S | 62 | V62V | gtT | gtA | 1 | 1 | B.1.258.17 | 0.000104 |
S | 62 | V62V | gtT | gtC | 1 | 1 | B.1.310 | 0.047619 |
S | 62 | V62F | Gtt | Ttt | 1 | 1 | B.1.311 | 0.000275 |
S | 62 | V62V | gtT | gtC | 1 | 1 | B.1.332 | 0.003497 |
S | 62 | V62L | Gtt | Ctt | 1 | 1 | B.1.351 | 0.00003 |
S | 62 | V62G | gTt | gGt | 1 | 1 | B.1.351.3 | 0.000876 |
S | 62 | V62I | Gtt | Att | 1 | 1 | B.1.36 | 0.000146 |
S | 62 | V62G | gTt | gGt | 1 | 1 | B.1.36.35 | 0.002604 |
S | 62 | V62del | GTT | --- | 1 | 1 | B.1.391 | 0.001127 |
S | 62 | V62G | gTt | gGt | 1 | 1 | B.1.409 | 0.000781 |
S | 62 | V62L | Gtt | Ctt | 1 | 1 | B.1.409 | 0.000781 |
S | 62 | V62del | GTT | --- | 1 | 1 | B.1.427 | 0.00005 |
S | 62 | V62F | Gtt | Ttt | 1 | 1 | B.1.427 | 0.00005 |
S | 62 | V62D | gTt | gAt | 1 | 1 | B.1.429 | 0.000024 |
S | 62 | V62I | Gtt | Att | 1 | 1 | B.1.429 | 0.000024 |
S | 62 | V62L | Gtt | Ctt | 1 | 1 | B.1.433 | 0.003195 |
S | 62 | V62I | Gtt | Att | 1 | 1 | B.1.466.2 | 0.000391 |
S | 62 | V62I | Gtt | Att | 1 | 1 | B.1.505 | 0.004386 |
S | 62 | V62G | gTt | gGt | 1 | 1 | B.1.525 | 0.000113 |
S | 62 | V62del1 | GtT | At- | 1 | 1 | B.1.525 | 0.000113 |
S | 62 | V62I | Gtt | Att | 1 | 1 | B.1.526 | 0.000024 |
S | 62 | V62L | Gtt | Ctt | 1 | 1 | B.1.526 | 0.000024 |
S | 62 | V62G | gTt | gGt | 1 | 1 | B.1.526 | 0.000024 |
S | 62 | V62L | Gtt | Ctt | 1 | 1 | B.1.568 | 0.001111 |
S | 62 | V62del | GTT | --- | 1 | 1 | B.1.596 | 0.000087 |
S | 62 | V62V | gtT | gtC | 1 | 1 | B.1.609 | 0.000479 |
S | 62 | V62G | gTt | gGt | 1 | 1 | B.1.617.1 | 0.000129 |
S | 62 | V62del1 | gtT | gt- | 1 | 1 | B.1.617.1 | 0.000129 |
S | 62 | V62L | GtT | CtG | 1 | 1 | B.1.617.1 | 0.000129 |
S | 62 | V62del | GTT | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 62 | V62L | Gtt | Ctt | 1 | 1 | B.1.621 | 0.000089 |
S | 62 | V62del | GTT | --- | 1 | 1 | B.1.621 | 0.000089 |
S | 62 | V62L | Gtt | Ctt | 1 | 1 | B.1.637 | 0.000073 |
S | 62 | V62F | Gtt | Ttt | 1 | 1 | B.1.9.4 | 0.006135 |
S | 62 | V62A | gTt | gCt | 1 | 1 | B.46 | 0.020833 |
S | 62 | V62V | gtT | gtC | 1 | 1 | B.6 | 0.00091 |
S | 62 | V62A | gTt | gCt | 1 | 1 | B.6.6 | 0.000889 |
S | 62 | V62I | Gtt | Att | 1 | 1 | B.6.6 | 0.000889 |
S | 62 | V62I | Gtt | Att | 1 | 1 | C.16 | 0.00106 |
S | 62 | V62V | gtT | gtC | 1 | 1 | C.16 | 0.00106 |
S | 62 | V62I | Gtt | Att | 1 | 1 | C.30 | 0.001727 |
S | 62 | V62del | GTT | --- | 1 | 1 | C.36 | 0.000911 |
S | 62 | V62del | GTT | --- | 1 | 1 | C.36.3 | 0.000567 |
S | 62 | V62I | Gtt | Att | 1 | 1 | P.1 | 0.000016 |
S | 62 | V62R | GTT | CGG | 1 | 1 | P.1 | 0.000016 |
S | 62 | V62del | GTT | --- | 1 | 1 | P.1.10.1 | 0.00813 |
S | 62 | V62del | GTT | --- | 1 | 1 | P.1.12 | 0.000484 |
S | 62 | V62V | gtT | gtG | 1 | 1 | P.1.17 | 0.000162 |
S | 62 | V62V | gtT | gtG | 1 | 1 | P.1.2 | 0.001156 |
S | 62 | V62V | gtT | gtG | 1 | 1 | P.2 | 0.000187 |
S | 62 | V62R | GTT | CGG | 1 | 1 | P.2 | 0.000187 |
S | 62 | V62G | gTT | gGG | 1 | 1 | P.2 | 0.000187 |
S | 62 | V62S | GTT | TCG | 1 | 1 | P.2 | 0.000187 |
S | 62 | V62A | gTT | gCG | 1 | 1 | P.2 | 0.000187 |
S | 62 | V62W | GTT | TGG | 1 | 1 | P.2 | 0.000187 |
S | 62 | V62F | Gtt | Ttt | 1 | 1 | P.7 | 0.004367 |
S | 62 | V62L | GtT | TtG | 1 | 1 | P.7 | 0.004367 |
S | 62 | V62del | GTT | --- | 1 | 1 | Q.1 | 0.000126 |
S | 62 | V62del | GTT | --- | 1 | 1 | Q.2 | 0.000613 |
S | 62 | V62del | GTT | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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