CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 615

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S615V615VsyngtTgtC6705170.77164223405-23407
S615V615VsyngtTgtA6701260.1880623405-23407
S615V615VsyngtTgtG670270.040298523405-23407
S615V615InonsynGttAtt553553123405-23407
S615V615FnonsynGttTtt533533123405-23407
S615V615LnonsynGttCtt237237123405-23407
S615V615AnonsyngTtgCt130130123405-23407
S615V615EnonsyngTTgAG99123405-23407
S615V615deldelGTT---66123405-23407
S615V615del1delGtt-tt320.66666723405-23407
S615V615del1delgTtg-t310.33333323405-23407
S615V615DnonsyngTtgAt11123405-23407

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S615V615VgtTgtC517670All0.000099
S615V615VgtTgtA126670All0.000024
S615V615VgtTgtG27670All0.000005
S615V615IGttAtt553553All0.000106
S615V615FGttTtt533533All0.000102
S615V615LGttCtt237237All0.000045
S615V615FGttTtt230230B.1.1.70.000206
S615V615VgtTgtA124131AY.40.000193
S615V615VgtTgtC7131AY.40.000011
S615V615AgTtgCt130130All0.000025
S615V615VgtTgtC98125B.1.1.70.000088
S615V615VgtTgtG26125B.1.1.70.000023
S615V615VgtTgtA1125B.1.1.70.000001
S615V615LGttCtt7878B.1.617.20.000294
S615V615VgtTgtC6969B.1.243.21
S615V615IGttAtt6666B.1.1.70.000059
S615V615FGttTtt6363AY.40.000098
S615V615IGttAtt6262AY.250.000373
S615V615IGttAtt5656B.1.1.3490.57732
S615V615LGttCtt5252AY.9.20.00191
S615V615IGttAtt5151AY.1180.003195
S615V615AgTtgCt5050B.1.1.70.000045
S615V615VgtTgtC4747B.1.1770.000619
S615V615LGttCtt4545AY.1020.001193
S615V615IGttAtt4444B.1.617.10.005674
S615V615VgtTgtC3838AY.30.000378
S615V615VgtTgtC3838AY.470.001182
S615V615VgtTgtC3636AY.750.002017
S615V615IGttAtt3131AY.40.000048
S615V615AgTtgCt3030B.1.617.20.000113
S615V615VgtTgtC2929B.1.177.810.00549
S615V615IGttAtt2323B.1.617.20.000087
S615V615IGttAtt2222AY.16.10.010338
S615V615FGttTtt2222AY.250.000132
S615V615VgtTgtC2020AY.440.000122
S615V615FGttTtt2020B.1.1770.000263
S615V615FGttTtt1919AY.1030.000118
S615V615FGttTtt1919B.1.5260.000447
S615V615FGttTtt1717AY.430.000075
S615V615LGttCtt1616AY.40.000025
S615V615IGttAtt1616AY.440.000097
S615V615FGttTtt1616B.1.617.20.00006
S615V615FGttTtt1515B.1.6310.050505
S615V615VgtTgtC1313AY.250.000078
S615V615IGttAtt1313B.3.10.021559
S615V615IGttAtt1212B.400.004372
S615V615IGttAtt1111AY.30.000109
S615V615FGttTtt1010AY.440.000061
S615V615FGttTtt1010AY.60.000411
S615V615EgTTgAG99All0.000002
S615V615AgTtgCt99AY.9.20.000331
S615V615FGttTtt99B.1.20.000079
S615V615VgtTgtC99B.1.617.20.000034
S615V615VgtTgtC88B.1.2580.000532
S615V615VgtTgtC77AY.160.002658
S615V615AgTtgCt77AY.230.000488
S615V615IGttAtt77B.1.1.3110.002507
S615V615VgtTgtC77B.1.2430.000487
S615V615IGttAtt77B.1.258.170.000728
S615V615IGttAtt77B.1.4970.002203
S615V615LGttCtt77B.1.5260.000165
S615V615delGTT---66All0.000001
S615V615AgTtgCt66AY.1000.000276
S615V615IGttAtt66AY.1000.000276
S615V615IGttAtt66AY.1030.000037
S615V615VgtTgtC66AY.1030.000037
S615V615IGttAtt66B.10.000055
S615V615VgtTgtC66B.1.1.540.018127
S615V615VgtTgtC66P.1.10.001906
S615V615IGttAtt55A.2.50.002495
S615V615FGttTtt55AY.1020.000133
S615V615FGttTtt55AY.30.00005
S615V615FGttTtt55AY.4.20.000108
S615V615LGttCtt55AY.4.20.000108
S615V615EgTTgAG55B.10.000046
S615V615FGttTtt55P.10.000079
S615V615VgtTgtC55P.1.100.001347
S615V615AgTtgCt55P.1.140.000239
S615V615IGttAtt44AY.430.000018
S615V615VgtTgtC44AY.430.000018
S615V615LGttCtt44AY.98.10.000194
S615V615FGttTtt44B.10.000037
S615V615VgtTgtC44B.10.000037
S615V615VgtTgtC44B.1.10.000073
S615V615VgtTgtC44B.1.1.3060.001754
S615V615LGttCtt44B.1.1.70.000004
S615V615FGttTtt44B.1.1600.000125
S615V615IGttAtt44B.1.20.000035
S615V615FGttTtt44B.1.6280.001409
S615V615FGttTtt44P.1.140.000191
S615V615del1Gtt-tt23All0
S615V615del1gTtg-t13All0
S615V615VgtTgtC33AY.1020.00008
S615V615LGttCtt33AY.1030.000019
S615V615IGttAtt33AY.1190.000106
S615V615LGttCtt33AY.1200.000112
S615V615FGttTtt33AY.200.000117
S615V615IGttAtt33AY.260.000085
S615V615LGttCtt33AY.390.000074
S615V615IGttAtt33AY.39.10.000119
S615V615IGttAtt33AY.4.20.000065
S615V615LGttCtt33AY.440.000018
S615V615AgTtgCt33AY.440.000018
S615V615IGttAtt33AY.46.60.000217
S615V615IGttAtt33AY.5.40.00083
S615V615IGttAtt33AY.980.000237
S615V615AgTtgCt33B.10.000027
S615V615IGttAtt33B.1.10.000054
S615V615IGttAtt33B.1.1.390.001529
S615V615LGttCtt33B.1.1.700.001023
S615V615FGttTtt33B.1.1.830.00813
S615V615VgtTgtC23B.1.20.000018
S615V615VgtTgtG13B.1.20.000009
S615V615IGttAtt33B.1.4270.000151
S615V615VgtTgtC33B.1.5960.000261
S615V615FGttTtt22AD.20.000438
S615V615IGttAtt22AY.1100.000225
S615V615VgtTgtC22AY.1170.000169
S615V615IGttAtt22AY.1200.000074
S615V615FGttTtt22AY.1210.000271
S615V615VgtTgtC22AY.260.000057
S615V615IGttAtt22AY.3.10.000171
S615V615FGttTtt22AY.390.000049
S615V615AgTtgCt22AY.40.000003
S615V615IGttAtt22AY.470.000062
S615V615IGttAtt22AY.530.000575
S615V615IGttAtt22AY.60.000082
S615V615FGttTtt22AY.750.000112
S615V615FGttTtt22B.1.1.2320.00363
S615V615FGttTtt22B.1.1.5190.000079
S615V615IGttAtt22B.1.1600.000062
S615V615IGttAtt22B.1.1770.000026
S615V615IGttAtt22B.1.30.005236
S615V615VgtTgtC22B.1.3510.000059
S615V615IGttAtt22B.1.36.290.001035
S615V615IGttAtt22B.1.4660.046512
S615V615IGttAtt22B.1.910.004149
S615V615IGttAtt22C.350.001548
S615V615VgtTgtC22P.10.000032
S615V615FGttTtt22P.1.170.000324
S615V615FGttTtt22Q.80.00033
S615V615FGttTtt110.055556
S615V615LGttCtt11A0.000387
S615V615IGttAtt11A.270.001656
S615V615DgTtgAt11All0
S615V615VgtTgtC11AY.100.00053
S615V615VgtTgtC11AY.1000.000046
S615V615AgTtgCt11AY.1050.000643
S615V615FGttTtt11AY.1110.000183
S615V615IGttAtt11AY.1130.000142
S615V615IGttAtt11AY.116.10.000311
S615V615AgTtgCt11AY.1170.000085
S615V615VgtTgtC11AY.1180.000063
S615V615VgtTgtC11AY.1190.000035
S615V615FGttTtt11AY.1200.000037
S615V615IGttAtt11AY.1210.000135
S615V615VgtTgtC11AY.1210.000135
S615V615FGttTtt11AY.140.000088
S615V615VgtTgtC11AY.200.000039
S615V615VgtTgtC11AY.230.00007
S615V615IGttAtt11AY.230.00007
S615V615LGttCtt11AY.250.000006
S615V615AgTtgCt11AY.250.000006
S615V615VgtTgtC11AY.270.000065
S615V615FGttTtt11AY.290.000016
S615V615LGttCtt11AY.290.000016
S615V615IGttAtt11AY.290.000016
S615V615AgTtgCt11AY.30.00001
S615V615IGttAtt11AY.300.000396
S615V615LGttCtt11AY.330.000067
S615V615IGttAtt11AY.370.000316
S615V615delGTT---11AY.380.000499
S615V615IGttAtt11AY.390.000025
S615V615VgtTgtC11AY.390.000025
S615V615AgTtgCt11AY.39.10.00004
S615V615IGttAtt11AY.4.50.000107
S615V615VgtTgtC11AY.410.000294
S615V615delGTT---11AY.430.000004
S615V615delGTT---11AY.440.000006
S615V615FGttTtt11AY.450.000122
S615V615FGttTtt11AY.460.000104
S615V615AgTtgCt11AY.46.40.000165
S615V615AgTtgCt11AY.470.000031
S615V615FGttTtt11AY.470.000031
S615V615FGttTtt11AY.50.000021
S615V615IGttAtt11AY.50.000021
S615V615VgtTgtC11AY.5.40.000277
S615V615IGttAtt11AY.540.000095
S615V615FGttTtt11AY.550.000917
S615V615VgtTgtC11AY.60.000041
S615V615AgTtgCt11AY.60.000041
S615V615FGttTtt11AY.610.000105
S615V615VgtTgtC11AY.620.000436
S615V615VgtTgtC11AY.680.000274
S615V615IGttAtt11AY.700.000209
S615V615VgtTgtC11AY.740.000116
S615V615IGttAtt11AY.750.000056
S615V615AgTtgCt11AY.75.10.00018
S615V615VgtTgtC11AY.75.10.00018
S615V615VgtTgtC11AY.840.000437
S615V615VgtTgtC11AY.90.000068
S615V615AgTtgCt11AY.900.000684
S615V615VgtTgtC11AY.98.10.000048
S615V615IGttAtt11AY.98.10.000048
S615V615FGttTtt11AY.98.10.000048
S615V615delGTT---11AY.99.20.000092
S615V615VgtTgtC11AY.99.20.000092
S615V615IGttAtt11AY.99.20.000092
S615V615IGttAtt11B0.000128
S615V615del1gTtg-t11B.10.000009
S615V615EgTTgAG11B.1.10.000018
S615V615FGttTtt11B.1.10.000018
S615V615EgTTgAG11B.1.1.1610.003534
S615V615VgtTgtC11B.1.1.2140.000055
S615V615VgtTgtC11B.1.1.2220.000204
S615V615VgtTgtC11B.1.1.250.000569
S615V615EgTTgAG11B.1.1.2650.003155
S615V615FGttTtt11B.1.1.280.000311
S615V615IGttAtt11B.1.1.280.000311
S615V615IGttAtt11B.1.1.3060.000438
S615V615AgTtgCt11B.1.1.3180.000302
S615V615LGttCtt11B.1.1.3260.001761
S615V615LGttCtt11B.1.1.370.000193
S615V615VgtTgtC11B.1.1.390.00051
S615V615IGttAtt11B.1.1.4090.002833
S615V615LGttCtt11B.1.1.5180.006329
S615V615VgtTgtC11B.1.1.5190.00004
S615V615IGttAtt11B.1.1.5190.00004
S615V615del1Gtt-tt11B.1.1.70.000001
S615V615EgTTgAG11B.1.1.710.006061
S615V615IGttAtt11B.1.110.30.000718
S615V615IGttAtt11B.1.120.008
S615V615del1Gtt-tt11B.1.1600.000031
S615V615VgtTgtC11B.1.160.310.008065
S615V615IGttAtt11B.1.177.210.000076
S615V615VgtTgtC11B.1.177.500.004695
S615V615IGttAtt11B.1.177.690.001484
S615V615FGttTtt11B.1.177.810.000189
S615V615IGttAtt11B.1.2410.000812
S615V615IGttAtt11B.1.2430.00007
S615V615IGttAtt11B.1.2790.000514
S615V615FGttTtt11B.1.3200.001245
S615V615VgtTgtC11B.1.3350.010309
S615V615IGttAtt11B.1.3500.002933
S615V615AgTtgCt11B.1.3510.00003
S615V615LGttCtt11B.1.3510.00003
S615V615IGttAtt11B.1.3580.05
S615V615FGttTtt11B.1.360.000146
S615V615VgtTgtC11B.1.36.180.00042
S615V615FGttTtt11B.1.36.280.005747
S615V615FGttTtt11B.1.3670.000792
S615V615FGttTtt11B.1.3700.008
S615V615AgTtgCt11B.1.4180.015873
S615V615LGttCtt11B.1.4290.000024
S615V615VgtTgtC11B.1.4290.000024
S615V615IGttAtt11B.1.4330.003195
S615V615VgtTgtC11B.1.438.10.000107
S615V615IGttAtt11B.1.4650.003802
S615V615IGttAtt11B.1.466.20.000391
S615V615VgtTgtC11B.1.4990.00105
S615V615IGttAtt11B.1.4990.00105
S615V615FGttTtt11B.1.5230.002451
S615V615IGttAtt11B.1.5250.000113
S615V615LGttCtt11B.1.5250.000113
S615V615AgTtgCt11B.1.5260.000024
S615V615FGttTtt11B.1.5580.004566
S615V615delGTT---11B.1.5640.000426
S615V615LGttCtt11B.1.5760.000907
S615V615VgtTgtC11B.1.5820.000491
S615V615FGttTtt11B.1.5950.000261
S615V615VgtTgtC11B.1.617.10.000129
S615V615FGttTtt11B.1.617.10.000129
S615V615delGTT---11B.1.6200.000946
S615V615DgTtgAt11B.1.6270.00202
S615V615IGttAtt11B.1.930.000934
S615V615VgtTgtA11B.6.60.000889
S615V615VgtTgtC11C.370.000116
S615V615IGttAtt11P.10.000016
S615V615FGttTtt11P.1.120.000484
S615V615VgtTgtC11P.1.140.000048
S615V615AgTtgCt11P.1.150.000232
S615V615IGttAtt11P.1.80.004785

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.