CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 6

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S6V6FnonsynGttTtt40754075121578-21580
S6V6AnonsyngTtgCt172417230.9994221578-21580
S6V6AnonsyngTTgCC172410.00058004621578-21580
S6V6InonsynGttAtt5044990.99007921578-21580
S6V6InonsynGtTAtA50450.0099206421578-21580
S6V6VsyngtTgtC2862300.80419621578-21580
S6V6VsyngtTgtA286430.1503521578-21580
S6V6VsyngtTgtG286130.045454521578-21580
S6V6LnonsynGttCtt85830.97647121578-21580
S6V6LnonsynGtTCtA8520.023529421578-21580
S6V6deldelGTT---7474121578-21580
S6V6GnonsyngTtgGt1111121578-21580
S6V6del1delGtt-tt1060.621578-21580
S6V6del1delgTtg-t1030.321578-21580
S6V6del1delgtTgt-1010.121578-21580
S6V6DnonsyngTtgAt55121578-21580
S6V6CnonsynGTtTGt33121578-21580
S6V6HnonsynGTtCAt320.66666721578-21580
S6V6del2delgTTg--320.66666721578-21580
S6V6EnonsyngTTgAA320.66666721578-21580
S6V6EnonsyngTTgAG310.33333321578-21580
S6V6HnonsynGTTCAC310.33333321578-21580
S6V6del2delGTt--t310.33333321578-21580
S6V6QnonsynGTTCAA22121578-21580
S6V6TnonsynGTtACt22121578-21580
S6V6NnonsynGTtAAt11121578-21580

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S6V6FGttTtt40754075All0.000779
S6V6FGttTtt19271927AY.430.008538
S6V6AgTtgCt17231724All0.00033
S6V6AgTTgCC11724All0
S6V6AgTtgCt16271627B.1.1.70.001457
S6V6IGttAtt499504All0.000095
S6V6IGtTAtA5504All0.000001
S6V6VgtTgtC230286All0.000044
S6V6VgtTgtA43286All0.000008
S6V6VgtTgtG13286All0.000002
S6V6FGttTtt283283B.1.1.70.000253
S6V6FGttTtt279279AY.440.001698
S6V6FGttTtt216216AY.40.000336
S6V6FGttTtt185185B.1.617.20.000697
S6V6FGttTtt180180B.1.3200.224159
S6V6FGttTtt139139B.1.160.110.794286
S6V6VgtTgtC102102B.1.1.4160.092308
S6V6IGttAtt102102B.1.1.70.000091
S6V6LGttCtt8385All0.000016
S6V6LGtTCtA285All0
S6V6IGttAtt7984AY.40.000123
S6V6IGtTAtA584AY.40.000008
S6V6FGttTtt8181B.10.000742
S6V6delGTT---7474All0.000014
S6V6FGttTtt6767AY.1030.000416
S6V6IGttAtt6363B.1.2410.051136
S6V6AgTtgCt4141AY.1030.000255
S6V6IGttAtt3535B.1.36.180.014706
S6V6FGttTtt3434B.1.20.000299
S6V6FGttTtt3333AY.46.60.002383
S6V6IGttAtt3232B.1.617.20.00012
S6V6FGttTtt3131AY.30.000308
S6V6FGttTtt3030P.10.000473
S6V6VgtTgtA2429AY.430.000106
S6V6VgtTgtC529AY.430.000022
S6V6IGttAtt2525AY.440.000152
S6V6FGttTtt2424B.1.1.4830.923077
S6V6FGttTtt2121AY.1210.002842
S6V6LGttCtt2121AY.4.20.000455
S6V6VgtTgtC1120AY.40.000017
S6V6VgtTgtA820AY.40.000012
S6V6VgtTgtG120AY.40.000002
S6V6FGttTtt2020B.1.10.000363
S6V6FGttTtt2020B.1.1.2030.338983
S6V6FGttTtt2020B.1.3490.014296
S6V6VgtTgtC1920B.1.5640.008092
S6V6VgtTgtG120B.1.5640.000426
S6V6FGttTtt1818AY.5.30.006073
S6V6VgtTgtC1717B.1.1.70.000015
S6V6FGttTtt1515AY.1020.000398
S6V6IGttAtt1515AY.9.20.000551
S6V6IGttAtt1515P.10.000236
S6V6IGttAtt1414AY.1030.000087
S6V6delGTT---1414AY.440.000085
S6V6FGttTtt1414B.1.1770.000184
S6V6LGttCtt1313P.10.000205
S6V6IGttAtt1212B.10.00011
S6V6IGttAtt1212B.1.1.250.006822
S6V6FGttTtt1212B.1.5280.571429
S6V6GgTtgGt1111All0.000002
S6V6LGttCtt1111AY.250.000066
S6V6LGttCtt1111AY.430.000049
S6V6FGttTtt1111AY.50.000227
S6V6del1Gtt-tt610All0.000001
S6V6del1gTtg-t310All0.000001
S6V6del1gtTgt-110All0
S6V6FGttTtt1010AY.1200.000372
S6V6FGttTtt1010AY.250.00006
S6V6FGttTtt1010AY.470.000311
S6V6IGttAtt1010AY.98.10.000484
S6V6FGttTtt1010B.1.1600.000312
S6V6FGttTtt1010B.1.3510.000297
S6V6FGttTtt99B.1.4290.000212
S6V6FGttTtt99B.1.5260.000212
S6V6FGttTtt99P.50.123288
S6V6FGttTtt88AY.1190.000282
S6V6VgtTgtC88AY.1200.000297
S6V6FGttTtt88AY.200.000311
S6V6IGttAtt88AY.30.00008
S6V6LGttCtt88AY.40.000012
S6V6FGttTtt88AY.930.002185
S6V6VgtTgtC68B.10.000055
S6V6VgtTgtA18B.10.000009
S6V6VgtTgtG18B.10.000009
S6V6FGttTtt88B.1.1.4410.4
S6V6FGttTtt88B.1.1.5190.000318
S6V6FGttTtt88B.1.2430.000557
S6V6IGttAtt88B.1.2430.000557
S6V6VgtTgtC88B.1.617.20.00003
S6V6delGTT---88B.1.617.20.00003
S6V6FGttTtt88B.1.6370.000585
S6V6FGttTtt77AY.260.000198
S6V6FGttTtt77AY.90.000473
S6V6FGttTtt77P.1.170.001132
S6V6FGttTtt66AY.1000.000276
S6V6VgtTgtC56AY.1030.000031
S6V6VgtTgtA16AY.1030.000006
S6V6FGttTtt66AY.1130.000854
S6V6delGTT---66AY.330.000401
S6V6IGttAtt66AY.50.000124
S6V6FGttTtt66AY.640.003571
S6V6FGttTtt66AY.750.000336
S6V6FGttTtt66B.1.177.440.003114
S6V6FGttTtt66B.1.177.570.001686
S6V6VgtTgtC66P.20.00112
S6V6DgTtgAt55All0.000001
S6V6IGttAtt55AY.250.00003
S6V6AgTtgCt55AY.40.000008
S6V6FGttTtt55AY.420.000201
S6V6FGttTtt55AY.780.007704
S6V6AgTtgCt55B.1.10.000091
S6V6FGttTtt55B.1.1.2140.000277
S6V6FGttTtt55B.1.1.2840.000537
S6V6delGTT---55B.1.1.70.000004
S6V6IGttAtt55B.1.20.000044
S6V6FGttTtt55B.1.360.00073
S6V6LGtTCtA240.111111
S6V6LGttCtt240.111111
S6V6FGttTtt44A.280.010582
S6V6IGttAtt44AY.1000.000184
S6V6VgtTgtC34AY.1000.000138
S6V6VgtTgtA14AY.1000.000046
S6V6FGttTtt44AY.390.000099
S6V6FGttTtt44AY.4.20.000087
S6V6IGttAtt44AY.430.000018
S6V6VgtTgtC44AY.750.000224
S6V6FGttTtt44AY.98.10.000194
S6V6delGTT---44B.1.10.000073
S6V6VgtTgtC44B.1.110.30.002874
S6V6FGttTtt44B.1.177.600.000874
S6V6AgTtgCt34B.1.2210.000213
S6V6AgTTgCC14B.1.2210.000071
S6V6FGttTtt44B.1.2320.002149
S6V6IGttAtt44B.1.3960.002823
S6V6FGttTtt44B.1.4000.001716
S6V6FGttTtt44B.1.5960.000349
S6V6IGttAtt33A.2.50.001497
S6V6FGttTtt33AE.80.001467
S6V6CGTtTGt33All0.000001
S6V6HGTtCAt23All0
S6V6EgTTgAA23All0
S6V6del2gTTg--23All0
S6V6EgTTgAG13All0
S6V6del2GTt--t13All0
S6V6HGTTCAC13All0
S6V6IGttAtt33AY.1020.00008
S6V6FGttTtt33AY.1180.000188
S6V6FGttTtt33AY.190.003421
S6V6VgtTgtC33AY.250.000018
S6V6IGttAtt33AY.260.000085
S6V6FGttTtt33AY.290.000047
S6V6AgTtgCt33AY.360.000445
S6V6FGttTtt33AY.39.10.000119
S6V6delGTT---33AY.430.000013
S6V6FGttTtt33AY.460.000312
S6V6FGttTtt33AY.60.000123
S6V6LGttCtt33AY.610.000314
S6V6FGttTtt33AY.700.000626
S6V6delGTT---33B.10.000027
S6V6VgtTgtC33B.1.10.000054
S6V6FGttTtt33B.1.1.3170.001235
S6V6LGttCtt33B.1.1.70.000003
S6V6GgTtgGt33B.1.1.70.000003
S6V6AgTtgCt33B.1.1600.000094
S6V6FGttTtt33B.1.2340.000396
S6V6VgtTgtC23B.1.4290.000047
S6V6VgtTgtG13B.1.4290.000024
S6V6FGttTtt33B.1.466.20.001174
S6V6IGttAtt33B.1.5170.001281
S6V6VgtTgtC33B.1.5260.000071
S6V6VgtTgtA33B.1.5960.000261
S6V6FGttTtt33B.1.617.10.000387
S6V6FGttTtt33B.1.617.30.008955
S6V6delGTT---33P.10.000047
S6V6FGttTtt33P.1.20.003468
S6V6FGttTtt33Q.10.000379
S6V6QGTTCAA220.111111
S6V6DgTtgAt220.111111
S6V6HGTtCAt220.111111
S6V6EgTTgAA220.111111
S6V6VgtTgtA220.111111
S6V6FGttTtt22A0.000774
S6V6FGttTtt22A.2.50.000998
S6V6FGttTtt22A.23.10.001408
S6V6QGTTCAA22All0
S6V6TGTtACt22All0
S6V6FGttTtt22AY.1060.00067
S6V6FGttTtt22AY.116.10.000623
S6V6FGttTtt22AY.230.000139
S6V6delGTT---22AY.250.000012
S6V6FGttTtt22AY.29.10.000441
S6V6AgTtgCt22AY.30.00002
S6V6FGttTtt22AY.3.10.000171
S6V6IGttAtt22AY.330.000134
S6V6FGttTtt22AY.34.10.00102
S6V6FGttTtt22AY.4.50.000215
S6V6AgTtgCt22AY.430.000009
S6V6LGttCtt22AY.440.000012
S6V6VgtTgtC22AY.440.000012
S6V6IGttAtt22AY.450.000243
S6V6VgtTgtG22AY.46.50.000397
S6V6FGttTtt22AY.610.00021
S6V6IGttAtt22AY.690.000373
S6V6FGttTtt22AY.710.00095
S6V6FGttTtt22AY.9.20.000073
S6V6FGttTtt22AY.980.000158
S6V6AgTtgCt22B.10.000018
S6V6AgTtgCt22B.1.1.1530.002191
S6V6FGttTtt22B.1.1.2200.003717
S6V6FGttTtt22B.1.1.2580.006515
S6V6FGttTtt22B.1.1.3060.000877
S6V6TGTtACt22B.1.1.4160.00181
S6V6VgtTgtC22B.1.160.70.004158
S6V6IGttAtt22B.1.1770.000026
S6V6delGTT---22B.1.20.000018
S6V6VgtTgtC12B.1.20.000009
S6V6VgtTgtG12B.1.20.000009
S6V6FGttTtt22B.1.2210.000142
S6V6FGttTtt22B.1.2410.001623
S6V6FGttTtt22B.1.2580.000133
S6V6VgtTgtC22B.1.2580.000133
S6V6FGttTtt22B.1.2650.002541
S6V6GgTtgGt22B.1.3510.000059
S6V6AgTtgCt22B.1.3510.000059
S6V6IGttAtt22B.1.360.000292
S6V6FGttTtt22B.1.36.80.002
S6V6delGTT---22B.1.5250.000226
S6V6FGttTtt22B.1.5950.000522
S6V6FGttTtt22B.1.595.10.011696
S6V6FGttTtt22B.1.6090.000959
S6V6AgTtgCt22B.1.617.20.000008
S6V6IGttAtt22B.1.6180.008065
S6V6FGttTtt22B.1.6190.001742
S6V6FGttTtt22B.1.6210.000177
S6V6FGttTtt22B.1.6280.000705
S6V6FGttTtt22D.20.00015
S6V6VgtTgtC22P.10.000032
S6V6IGttAtt22P.20.000373
S6V6VgtTgtG22Q.80.00033
S6V6LGttCtt11A.10.000282
S6V6FGttTtt11A.20.000662
S6V6delGTT---11A.2.40.003367
S6V6VgtTgtG11A.2.40.003367
S6V6FGttTtt11AD.20.000219
S6V6NGTtAAt11All0
S6V6FGttTtt11AY.100.00053
S6V6delGTT---11AY.1000.000046
S6V6del1gtTgt-11AY.1030.000006
S6V6delGTT---11AY.1030.000006
S6V6FGttTtt11AY.1050.000643
S6V6IGttAtt11AY.1070.000466
S6V6FGttTtt11AY.1080.001103
S6V6AgTtgCt11AY.1130.000142
S6V6FGttTtt11AY.1140.000231
S6V6delGTT---11AY.140.000088
S6V6LGttCtt11AY.150.002222
S6V6FGttTtt11AY.160.00038
S6V6FGttTtt11AY.16.10.00047
S6V6IGttAtt11AY.200.000039
S6V6AgTtgCt11AY.200.000039
S6V6VgtTgtC11AY.230.00007
S6V6FGttTtt11AY.23.10.000417
S6V6AgTtgCt11AY.23.10.000417
S6V6AgTtgCt11AY.240.000431
S6V6GgTtgGt11AY.250.000006
S6V6AgTtgCt11AY.260.000028
S6V6LGttCtt11AY.270.000065
S6V6FGttTtt11AY.270.000065
S6V6LGttCtt11AY.290.000016
S6V6AgTtgCt11AY.290.000016
S6V6VgtTgtG11AY.30.00001
S6V6delGTT---11AY.30.00001
S6V6IGttAtt11AY.3.10.000085
S6V6FGttTtt11AY.300.000396
S6V6FGttTtt11AY.330.000067
S6V6IGttAtt11AY.350.000233
S6V6CGTtTGt11AY.360.000148
S6V6delGTT---11AY.380.000499
S6V6IGttAtt11AY.39.10.00004
S6V6del1Gtt-tt11AY.40.000002
S6V6FGttTtt11AY.4.2.10.000149
S6V6delGTT---11AY.4.30.000842
S6V6FGttTtt11AY.410.000294
S6V6AgTtgCt11AY.420.00004
S6V6delGTT---11AY.420.00004
S6V6del1Gtt-tt11AY.430.000004
S6V6AgTtgCt11AY.460.000104
S6V6FGttTtt11AY.46.10.001027
S6V6del1Gtt-tt11AY.46.60.000072
S6V6AgTtgCt11AY.46.60.000072
S6V6IGttAtt11AY.46.60.000072
S6V6VgtTgtA11AY.50.000021
S6V6AgTtgCt11AY.50.000021
S6V6FGttTtt11AY.530.000288
S6V6VgtTgtA11AY.530.000288
S6V6delGTT---11AY.540.000095
S6V6VgtTgtC11AY.550.000917
S6V6FGttTtt11AY.550.000917
S6V6IGttAtt11AY.590.00053
S6V6IGttAtt11AY.60.000041
S6V6AgTtgCt11AY.610.000105
S6V6IGttAtt11AY.670.000464
S6V6delGTT---11AY.680.000274
S6V6AgTtgCt11AY.690.000187
S6V6VgtTgtC11AY.7.10.000113
S6V6FGttTtt11AY.720.001361
S6V6FGttTtt11AY.740.000116
S6V6FGttTtt11AY.880.000884
S6V6FGttTtt11AY.9.10.000084
S6V6FGttTtt11AY.900.000684
S6V6FGttTtt11AY.99.10.001553
S6V6AgTtgCt11AY.99.20.000092
S6V6LGttCtt11B.10.000009
S6V6del1gTtg-t11B.10.000009
S6V6GgTtgGt11B.10.000009
S6V6IGttAtt11B.1.10.000018
S6V6GgTtgGt11B.1.10.000018
S6V6LGttCtt11B.1.10.000018
S6V6IGttAtt11B.1.1.100.001115
S6V6GgTtgGt11B.1.1.1570.000913
S6V6FGttTtt11B.1.1.1630.007634
S6V6VgtTgtC11B.1.1.1700.001247
S6V6EgTTgAG11B.1.1.2140.000055
S6V6LGttCtt11B.1.1.2400.004695
S6V6FGttTtt11B.1.1.2410.00207
S6V6FGttTtt11B.1.1.280.000311
S6V6FGttTtt11B.1.1.2830.023256
S6V6AgTtgCt11B.1.1.3060.000438
S6V6delGTT---11B.1.1.3150.008475
S6V6FGttTtt11B.1.1.370.000193
S6V6FGttTtt11B.1.1.3780.007299
S6V6FGttTtt11B.1.1.390.00051
S6V6VgtTgtC11B.1.1.390.00051
S6V6FGttTtt11B.1.1.4320.001266
S6V6delGTT---11B.1.1.460.004367
S6V6FGttTtt11B.1.1.500.000679
S6V6AgTtgCt11B.1.1.500.000679
S6V6AgTtgCt11B.1.1.5190.00004
S6V6VgtTgtG11B.1.1.5190.00004
S6V6FGttTtt11B.1.1.560.017857
S6V6VgtTgtC11B.1.1.630.000386
S6V6del1Gtt-tt11B.1.1.70.000001
S6V6DgTtgAt11B.1.1.70.000001
S6V6NGTtAAt11B.1.1.70.000001
S6V6FGttTtt11B.1.1.700.000341
S6V6CGTtTGt11B.1.110.30.000718
S6V6FGttTtt11B.1.1110.001175
S6V6FGttTtt11B.1.1430.021277
S6V6CGTtTGt11B.1.1600.000031
S6V6DgTtgAt11B.1.1600.000031
S6V6FGttTtt11B.1.160.120.00641
S6V6FGttTtt11B.1.160.320.004292
S6V6VgtTgtG11B.1.1770.000013
S6V6DgTtgAt11B.1.1770.000013
S6V6del1Gtt-tt11B.1.177.120.000152
S6V6FGttTtt11B.1.177.160.000664
S6V6AgTtgCt11B.1.177.170.000821
S6V6FGttTtt11B.1.177.170.000821
S6V6FGttTtt11B.1.177.310.011494
S6V6FGttTtt11B.1.177.40.000211
S6V6LGttCtt11B.1.177.40.000211
S6V6delGTT---11B.1.177.680.015152
S6V6FGttTtt11B.1.177.730.000566
S6V6delGTT---11B.1.177.830.001481
S6V6FGttTtt11B.1.177.860.000183
S6V6FGttTtt11B.1.1990.004132
S6V6del2gTTg--11B.1.20.000009
S6V6delGTT---11B.1.2320.000537
S6V6AgTtgCt11B.1.2430.00007
S6V6delGTT---11B.1.258.160.001637
S6V6VgtTgtC11B.1.3110.000275
S6V6VgtTgtC11B.1.3510.00003
S6V6FGttTtt11B.1.3560.001727
S6V6VgtTgtC11B.1.360.000146
S6V6AgTtgCt11B.1.360.000146
S6V6FGttTtt11B.1.36.310.001751
S6V6FGttTtt11B.1.36.390.002217
S6V6GgTtgGt11B.1.36.80.001
S6V6AgTtgCt11B.1.3690.000285
S6V6FGttTtt11B.1.3690.000285
S6V6FGttTtt11B.1.3890.001002
S6V6FGttTtt11B.1.3960.000706
S6V6AgTtgCt11B.1.4270.00005
S6V6AgTtgCt11B.1.4280.00102
S6V6IGttAtt11B.1.4290.000024
S6V6delGTT---11B.1.4530.003236
S6V6del1gTtg-t11B.1.4590.004082
S6V6FGttTtt11B.1.5030.002488
S6V6FGttTtt11B.1.5100.026316
S6V6FGttTtt11B.1.5250.000113
S6V6delGTT---11B.1.5260.000024
S6V6VgtTgtC11B.1.5270.003704
S6V6FGttTtt11B.1.5600.00463
S6V6VgtTgtC11B.1.5650.00081
S6V6IGttAtt11B.1.5750.000303
S6V6FGttTtt11B.1.5800.004065
S6V6IGttAtt11B.1.5890.007576
S6V6del2GTt--t11B.1.617.20.000004
S6V6del2gTTg--11B.1.617.30.002985
S6V6delGTT---11B.1.6200.000946
S6V6AgTtgCt11B.1.6200.000946
S6V6del1Gtt-tt11B.1.6210.000089
S6V6IGttAtt11B.1.6210.000089
S6V6delGTT---11B.1.6370.000073
S6V6FGttTtt11B.1.970.025641
S6V6FGttTtt11B.270.015385
S6V6FGttTtt11B.6.10.026316
S6V6VgtTgtA11C.180.002591
S6V6FGttTtt11C.300.001727
S6V6FGttTtt11C.36.3.10.002717
S6V6GgTtgGt11D.20.000075
S6V6HGTTCAC11P.10.000016
S6V6del1gTtg-t11P.10.000016
S6V6delGTT---11P.1.100.000269
S6V6FGttTtt11P.1.140.000048
S6V6AgTtgCt11P.1.140.000048
S6V6VgtTgtC11P.1.140.000048
S6V6LGttCtt11P.1.40.000977
S6V6FGttTtt11P.1.70.000319
S6V6FGttTtt11P.20.000187
S6V6delGTT---11Q.80.000165
S6V6FGttTtt11W.10.008696