CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 6 | V6F | nonsyn | Gtt | Ttt | 4075 | 4075 | 1 | 21578-21580 | |
S | 6 | V6A | nonsyn | gTt | gCt | 1724 | 1723 | 0.99942 | 21578-21580 | |
S | 6 | V6A | nonsyn | gTT | gCC | 1724 | 1 | 0.000580046 | 21578-21580 | |
S | 6 | V6I | nonsyn | Gtt | Att | 504 | 499 | 0.990079 | 21578-21580 | |
S | 6 | V6I | nonsyn | GtT | AtA | 504 | 5 | 0.00992064 | 21578-21580 | |
S | 6 | V6V | syn | gtT | gtC | 286 | 230 | 0.804196 | 21578-21580 | |
S | 6 | V6V | syn | gtT | gtA | 286 | 43 | 0.15035 | 21578-21580 | |
S | 6 | V6V | syn | gtT | gtG | 286 | 13 | 0.0454545 | 21578-21580 | |
S | 6 | V6L | nonsyn | Gtt | Ctt | 85 | 83 | 0.976471 | 21578-21580 | |
S | 6 | V6L | nonsyn | GtT | CtA | 85 | 2 | 0.0235294 | 21578-21580 | |
S | 6 | V6del | del | GTT | --- | 74 | 74 | 1 | 21578-21580 | |
S | 6 | V6G | nonsyn | gTt | gGt | 11 | 11 | 1 | 21578-21580 | |
S | 6 | V6del1 | del | Gtt | -tt | 10 | 6 | 0.6 | 21578-21580 | |
S | 6 | V6del1 | del | gTt | g-t | 10 | 3 | 0.3 | 21578-21580 | |
S | 6 | V6del1 | del | gtT | gt- | 10 | 1 | 0.1 | 21578-21580 | |
S | 6 | V6D | nonsyn | gTt | gAt | 5 | 5 | 1 | 21578-21580 | |
S | 6 | V6C | nonsyn | GTt | TGt | 3 | 3 | 1 | 21578-21580 | |
S | 6 | V6H | nonsyn | GTt | CAt | 3 | 2 | 0.666667 | 21578-21580 | |
S | 6 | V6del2 | del | gTT | g-- | 3 | 2 | 0.666667 | 21578-21580 | |
S | 6 | V6E | nonsyn | gTT | gAA | 3 | 2 | 0.666667 | 21578-21580 | |
S | 6 | V6E | nonsyn | gTT | gAG | 3 | 1 | 0.333333 | 21578-21580 | |
S | 6 | V6H | nonsyn | GTT | CAC | 3 | 1 | 0.333333 | 21578-21580 | |
S | 6 | V6del2 | del | GTt | --t | 3 | 1 | 0.333333 | 21578-21580 | |
S | 6 | V6Q | nonsyn | GTT | CAA | 2 | 2 | 1 | 21578-21580 | |
S | 6 | V6T | nonsyn | GTt | ACt | 2 | 2 | 1 | 21578-21580 | |
S | 6 | V6N | nonsyn | GTt | AAt | 1 | 1 | 1 | 21578-21580 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 6 | V6F | Gtt | Ttt | 4075 | 4075 | All | 0.000779 |
S | 6 | V6F | Gtt | Ttt | 1927 | 1927 | AY.43 | 0.008538 |
S | 6 | V6A | gTt | gCt | 1723 | 1724 | All | 0.00033 |
S | 6 | V6A | gTT | gCC | 1 | 1724 | All | 0 |
S | 6 | V6A | gTt | gCt | 1627 | 1627 | B.1.1.7 | 0.001457 |
S | 6 | V6I | Gtt | Att | 499 | 504 | All | 0.000095 |
S | 6 | V6I | GtT | AtA | 5 | 504 | All | 0.000001 |
S | 6 | V6V | gtT | gtC | 230 | 286 | All | 0.000044 |
S | 6 | V6V | gtT | gtA | 43 | 286 | All | 0.000008 |
S | 6 | V6V | gtT | gtG | 13 | 286 | All | 0.000002 |
S | 6 | V6F | Gtt | Ttt | 283 | 283 | B.1.1.7 | 0.000253 |
S | 6 | V6F | Gtt | Ttt | 279 | 279 | AY.44 | 0.001698 |
S | 6 | V6F | Gtt | Ttt | 216 | 216 | AY.4 | 0.000336 |
S | 6 | V6F | Gtt | Ttt | 185 | 185 | B.1.617.2 | 0.000697 |
S | 6 | V6F | Gtt | Ttt | 180 | 180 | B.1.320 | 0.224159 |
S | 6 | V6F | Gtt | Ttt | 139 | 139 | B.1.160.11 | 0.794286 |
S | 6 | V6V | gtT | gtC | 102 | 102 | B.1.1.416 | 0.092308 |
S | 6 | V6I | Gtt | Att | 102 | 102 | B.1.1.7 | 0.000091 |
S | 6 | V6L | Gtt | Ctt | 83 | 85 | All | 0.000016 |
S | 6 | V6L | GtT | CtA | 2 | 85 | All | 0 |
S | 6 | V6I | Gtt | Att | 79 | 84 | AY.4 | 0.000123 |
S | 6 | V6I | GtT | AtA | 5 | 84 | AY.4 | 0.000008 |
S | 6 | V6F | Gtt | Ttt | 81 | 81 | B.1 | 0.000742 |
S | 6 | V6del | GTT | --- | 74 | 74 | All | 0.000014 |
S | 6 | V6F | Gtt | Ttt | 67 | 67 | AY.103 | 0.000416 |
S | 6 | V6I | Gtt | Att | 63 | 63 | B.1.241 | 0.051136 |
S | 6 | V6A | gTt | gCt | 41 | 41 | AY.103 | 0.000255 |
S | 6 | V6I | Gtt | Att | 35 | 35 | B.1.36.18 | 0.014706 |
S | 6 | V6F | Gtt | Ttt | 34 | 34 | B.1.2 | 0.000299 |
S | 6 | V6F | Gtt | Ttt | 33 | 33 | AY.46.6 | 0.002383 |
S | 6 | V6I | Gtt | Att | 32 | 32 | B.1.617.2 | 0.00012 |
S | 6 | V6F | Gtt | Ttt | 31 | 31 | AY.3 | 0.000308 |
S | 6 | V6F | Gtt | Ttt | 30 | 30 | P.1 | 0.000473 |
S | 6 | V6V | gtT | gtA | 24 | 29 | AY.43 | 0.000106 |
S | 6 | V6V | gtT | gtC | 5 | 29 | AY.43 | 0.000022 |
S | 6 | V6I | Gtt | Att | 25 | 25 | AY.44 | 0.000152 |
S | 6 | V6F | Gtt | Ttt | 24 | 24 | B.1.1.483 | 0.923077 |
S | 6 | V6F | Gtt | Ttt | 21 | 21 | AY.121 | 0.002842 |
S | 6 | V6L | Gtt | Ctt | 21 | 21 | AY.4.2 | 0.000455 |
S | 6 | V6V | gtT | gtC | 11 | 20 | AY.4 | 0.000017 |
S | 6 | V6V | gtT | gtA | 8 | 20 | AY.4 | 0.000012 |
S | 6 | V6V | gtT | gtG | 1 | 20 | AY.4 | 0.000002 |
S | 6 | V6F | Gtt | Ttt | 20 | 20 | B.1.1 | 0.000363 |
S | 6 | V6F | Gtt | Ttt | 20 | 20 | B.1.1.203 | 0.338983 |
S | 6 | V6F | Gtt | Ttt | 20 | 20 | B.1.349 | 0.014296 |
S | 6 | V6V | gtT | gtC | 19 | 20 | B.1.564 | 0.008092 |
S | 6 | V6V | gtT | gtG | 1 | 20 | B.1.564 | 0.000426 |
S | 6 | V6F | Gtt | Ttt | 18 | 18 | AY.5.3 | 0.006073 |
S | 6 | V6V | gtT | gtC | 17 | 17 | B.1.1.7 | 0.000015 |
S | 6 | V6F | Gtt | Ttt | 15 | 15 | AY.102 | 0.000398 |
S | 6 | V6I | Gtt | Att | 15 | 15 | AY.9.2 | 0.000551 |
S | 6 | V6I | Gtt | Att | 15 | 15 | P.1 | 0.000236 |
S | 6 | V6I | Gtt | Att | 14 | 14 | AY.103 | 0.000087 |
S | 6 | V6del | GTT | --- | 14 | 14 | AY.44 | 0.000085 |
S | 6 | V6F | Gtt | Ttt | 14 | 14 | B.1.177 | 0.000184 |
S | 6 | V6L | Gtt | Ctt | 13 | 13 | P.1 | 0.000205 |
S | 6 | V6I | Gtt | Att | 12 | 12 | B.1 | 0.00011 |
S | 6 | V6I | Gtt | Att | 12 | 12 | B.1.1.25 | 0.006822 |
S | 6 | V6F | Gtt | Ttt | 12 | 12 | B.1.528 | 0.571429 |
S | 6 | V6G | gTt | gGt | 11 | 11 | All | 0.000002 |
S | 6 | V6L | Gtt | Ctt | 11 | 11 | AY.25 | 0.000066 |
S | 6 | V6L | Gtt | Ctt | 11 | 11 | AY.43 | 0.000049 |
S | 6 | V6F | Gtt | Ttt | 11 | 11 | AY.5 | 0.000227 |
S | 6 | V6del1 | Gtt | -tt | 6 | 10 | All | 0.000001 |
S | 6 | V6del1 | gTt | g-t | 3 | 10 | All | 0.000001 |
S | 6 | V6del1 | gtT | gt- | 1 | 10 | All | 0 |
S | 6 | V6F | Gtt | Ttt | 10 | 10 | AY.120 | 0.000372 |
S | 6 | V6F | Gtt | Ttt | 10 | 10 | AY.25 | 0.00006 |
S | 6 | V6F | Gtt | Ttt | 10 | 10 | AY.47 | 0.000311 |
S | 6 | V6I | Gtt | Att | 10 | 10 | AY.98.1 | 0.000484 |
S | 6 | V6F | Gtt | Ttt | 10 | 10 | B.1.160 | 0.000312 |
S | 6 | V6F | Gtt | Ttt | 10 | 10 | B.1.351 | 0.000297 |
S | 6 | V6F | Gtt | Ttt | 9 | 9 | B.1.429 | 0.000212 |
S | 6 | V6F | Gtt | Ttt | 9 | 9 | B.1.526 | 0.000212 |
S | 6 | V6F | Gtt | Ttt | 9 | 9 | P.5 | 0.123288 |
S | 6 | V6F | Gtt | Ttt | 8 | 8 | AY.119 | 0.000282 |
S | 6 | V6V | gtT | gtC | 8 | 8 | AY.120 | 0.000297 |
S | 6 | V6F | Gtt | Ttt | 8 | 8 | AY.20 | 0.000311 |
S | 6 | V6I | Gtt | Att | 8 | 8 | AY.3 | 0.00008 |
S | 6 | V6L | Gtt | Ctt | 8 | 8 | AY.4 | 0.000012 |
S | 6 | V6F | Gtt | Ttt | 8 | 8 | AY.93 | 0.002185 |
S | 6 | V6V | gtT | gtC | 6 | 8 | B.1 | 0.000055 |
S | 6 | V6V | gtT | gtA | 1 | 8 | B.1 | 0.000009 |
S | 6 | V6V | gtT | gtG | 1 | 8 | B.1 | 0.000009 |
S | 6 | V6F | Gtt | Ttt | 8 | 8 | B.1.1.441 | 0.4 |
S | 6 | V6F | Gtt | Ttt | 8 | 8 | B.1.1.519 | 0.000318 |
S | 6 | V6F | Gtt | Ttt | 8 | 8 | B.1.243 | 0.000557 |
S | 6 | V6I | Gtt | Att | 8 | 8 | B.1.243 | 0.000557 |
S | 6 | V6V | gtT | gtC | 8 | 8 | B.1.617.2 | 0.00003 |
S | 6 | V6del | GTT | --- | 8 | 8 | B.1.617.2 | 0.00003 |
S | 6 | V6F | Gtt | Ttt | 8 | 8 | B.1.637 | 0.000585 |
S | 6 | V6F | Gtt | Ttt | 7 | 7 | AY.26 | 0.000198 |
S | 6 | V6F | Gtt | Ttt | 7 | 7 | AY.9 | 0.000473 |
S | 6 | V6F | Gtt | Ttt | 7 | 7 | P.1.17 | 0.001132 |
S | 6 | V6F | Gtt | Ttt | 6 | 6 | AY.100 | 0.000276 |
S | 6 | V6V | gtT | gtC | 5 | 6 | AY.103 | 0.000031 |
S | 6 | V6V | gtT | gtA | 1 | 6 | AY.103 | 0.000006 |
S | 6 | V6F | Gtt | Ttt | 6 | 6 | AY.113 | 0.000854 |
S | 6 | V6del | GTT | --- | 6 | 6 | AY.33 | 0.000401 |
S | 6 | V6I | Gtt | Att | 6 | 6 | AY.5 | 0.000124 |
S | 6 | V6F | Gtt | Ttt | 6 | 6 | AY.64 | 0.003571 |
S | 6 | V6F | Gtt | Ttt | 6 | 6 | AY.75 | 0.000336 |
S | 6 | V6F | Gtt | Ttt | 6 | 6 | B.1.177.44 | 0.003114 |
S | 6 | V6F | Gtt | Ttt | 6 | 6 | B.1.177.57 | 0.001686 |
S | 6 | V6V | gtT | gtC | 6 | 6 | P.2 | 0.00112 |
S | 6 | V6D | gTt | gAt | 5 | 5 | All | 0.000001 |
S | 6 | V6I | Gtt | Att | 5 | 5 | AY.25 | 0.00003 |
S | 6 | V6A | gTt | gCt | 5 | 5 | AY.4 | 0.000008 |
S | 6 | V6F | Gtt | Ttt | 5 | 5 | AY.42 | 0.000201 |
S | 6 | V6F | Gtt | Ttt | 5 | 5 | AY.78 | 0.007704 |
S | 6 | V6A | gTt | gCt | 5 | 5 | B.1.1 | 0.000091 |
S | 6 | V6F | Gtt | Ttt | 5 | 5 | B.1.1.214 | 0.000277 |
S | 6 | V6F | Gtt | Ttt | 5 | 5 | B.1.1.284 | 0.000537 |
S | 6 | V6del | GTT | --- | 5 | 5 | B.1.1.7 | 0.000004 |
S | 6 | V6I | Gtt | Att | 5 | 5 | B.1.2 | 0.000044 |
S | 6 | V6F | Gtt | Ttt | 5 | 5 | B.1.36 | 0.00073 |
S | 6 | V6L | GtT | CtA | 2 | 4 | 0.111111 | |
S | 6 | V6L | Gtt | Ctt | 2 | 4 | 0.111111 | |
S | 6 | V6F | Gtt | Ttt | 4 | 4 | A.28 | 0.010582 |
S | 6 | V6I | Gtt | Att | 4 | 4 | AY.100 | 0.000184 |
S | 6 | V6V | gtT | gtC | 3 | 4 | AY.100 | 0.000138 |
S | 6 | V6V | gtT | gtA | 1 | 4 | AY.100 | 0.000046 |
S | 6 | V6F | Gtt | Ttt | 4 | 4 | AY.39 | 0.000099 |
S | 6 | V6F | Gtt | Ttt | 4 | 4 | AY.4.2 | 0.000087 |
S | 6 | V6I | Gtt | Att | 4 | 4 | AY.43 | 0.000018 |
S | 6 | V6V | gtT | gtC | 4 | 4 | AY.75 | 0.000224 |
S | 6 | V6F | Gtt | Ttt | 4 | 4 | AY.98.1 | 0.000194 |
S | 6 | V6del | GTT | --- | 4 | 4 | B.1.1 | 0.000073 |
S | 6 | V6V | gtT | gtC | 4 | 4 | B.1.110.3 | 0.002874 |
S | 6 | V6F | Gtt | Ttt | 4 | 4 | B.1.177.60 | 0.000874 |
S | 6 | V6A | gTt | gCt | 3 | 4 | B.1.221 | 0.000213 |
S | 6 | V6A | gTT | gCC | 1 | 4 | B.1.221 | 0.000071 |
S | 6 | V6F | Gtt | Ttt | 4 | 4 | B.1.232 | 0.002149 |
S | 6 | V6I | Gtt | Att | 4 | 4 | B.1.396 | 0.002823 |
S | 6 | V6F | Gtt | Ttt | 4 | 4 | B.1.400 | 0.001716 |
S | 6 | V6F | Gtt | Ttt | 4 | 4 | B.1.596 | 0.000349 |
S | 6 | V6I | Gtt | Att | 3 | 3 | A.2.5 | 0.001497 |
S | 6 | V6F | Gtt | Ttt | 3 | 3 | AE.8 | 0.001467 |
S | 6 | V6C | GTt | TGt | 3 | 3 | All | 0.000001 |
S | 6 | V6H | GTt | CAt | 2 | 3 | All | 0 |
S | 6 | V6E | gTT | gAA | 2 | 3 | All | 0 |
S | 6 | V6del2 | gTT | g-- | 2 | 3 | All | 0 |
S | 6 | V6E | gTT | gAG | 1 | 3 | All | 0 |
S | 6 | V6del2 | GTt | --t | 1 | 3 | All | 0 |
S | 6 | V6H | GTT | CAC | 1 | 3 | All | 0 |
S | 6 | V6I | Gtt | Att | 3 | 3 | AY.102 | 0.00008 |
S | 6 | V6F | Gtt | Ttt | 3 | 3 | AY.118 | 0.000188 |
S | 6 | V6F | Gtt | Ttt | 3 | 3 | AY.19 | 0.003421 |
S | 6 | V6V | gtT | gtC | 3 | 3 | AY.25 | 0.000018 |
S | 6 | V6I | Gtt | Att | 3 | 3 | AY.26 | 0.000085 |
S | 6 | V6F | Gtt | Ttt | 3 | 3 | AY.29 | 0.000047 |
S | 6 | V6A | gTt | gCt | 3 | 3 | AY.36 | 0.000445 |
S | 6 | V6F | Gtt | Ttt | 3 | 3 | AY.39.1 | 0.000119 |
S | 6 | V6del | GTT | --- | 3 | 3 | AY.43 | 0.000013 |
S | 6 | V6F | Gtt | Ttt | 3 | 3 | AY.46 | 0.000312 |
S | 6 | V6F | Gtt | Ttt | 3 | 3 | AY.6 | 0.000123 |
S | 6 | V6L | Gtt | Ctt | 3 | 3 | AY.61 | 0.000314 |
S | 6 | V6F | Gtt | Ttt | 3 | 3 | AY.70 | 0.000626 |
S | 6 | V6del | GTT | --- | 3 | 3 | B.1 | 0.000027 |
S | 6 | V6V | gtT | gtC | 3 | 3 | B.1.1 | 0.000054 |
S | 6 | V6F | Gtt | Ttt | 3 | 3 | B.1.1.317 | 0.001235 |
S | 6 | V6L | Gtt | Ctt | 3 | 3 | B.1.1.7 | 0.000003 |
S | 6 | V6G | gTt | gGt | 3 | 3 | B.1.1.7 | 0.000003 |
S | 6 | V6A | gTt | gCt | 3 | 3 | B.1.160 | 0.000094 |
S | 6 | V6F | Gtt | Ttt | 3 | 3 | B.1.234 | 0.000396 |
S | 6 | V6V | gtT | gtC | 2 | 3 | B.1.429 | 0.000047 |
S | 6 | V6V | gtT | gtG | 1 | 3 | B.1.429 | 0.000024 |
S | 6 | V6F | Gtt | Ttt | 3 | 3 | B.1.466.2 | 0.001174 |
S | 6 | V6I | Gtt | Att | 3 | 3 | B.1.517 | 0.001281 |
S | 6 | V6V | gtT | gtC | 3 | 3 | B.1.526 | 0.000071 |
S | 6 | V6V | gtT | gtA | 3 | 3 | B.1.596 | 0.000261 |
S | 6 | V6F | Gtt | Ttt | 3 | 3 | B.1.617.1 | 0.000387 |
S | 6 | V6F | Gtt | Ttt | 3 | 3 | B.1.617.3 | 0.008955 |
S | 6 | V6del | GTT | --- | 3 | 3 | P.1 | 0.000047 |
S | 6 | V6F | Gtt | Ttt | 3 | 3 | P.1.2 | 0.003468 |
S | 6 | V6F | Gtt | Ttt | 3 | 3 | Q.1 | 0.000379 |
S | 6 | V6Q | GTT | CAA | 2 | 2 | 0.111111 | |
S | 6 | V6D | gTt | gAt | 2 | 2 | 0.111111 | |
S | 6 | V6H | GTt | CAt | 2 | 2 | 0.111111 | |
S | 6 | V6E | gTT | gAA | 2 | 2 | 0.111111 | |
S | 6 | V6V | gtT | gtA | 2 | 2 | 0.111111 | |
S | 6 | V6F | Gtt | Ttt | 2 | 2 | A | 0.000774 |
S | 6 | V6F | Gtt | Ttt | 2 | 2 | A.2.5 | 0.000998 |
S | 6 | V6F | Gtt | Ttt | 2 | 2 | A.23.1 | 0.001408 |
S | 6 | V6Q | GTT | CAA | 2 | 2 | All | 0 |
S | 6 | V6T | GTt | ACt | 2 | 2 | All | 0 |
S | 6 | V6F | Gtt | Ttt | 2 | 2 | AY.106 | 0.00067 |
S | 6 | V6F | Gtt | Ttt | 2 | 2 | AY.116.1 | 0.000623 |
S | 6 | V6F | Gtt | Ttt | 2 | 2 | AY.23 | 0.000139 |
S | 6 | V6del | GTT | --- | 2 | 2 | AY.25 | 0.000012 |
S | 6 | V6F | Gtt | Ttt | 2 | 2 | AY.29.1 | 0.000441 |
S | 6 | V6A | gTt | gCt | 2 | 2 | AY.3 | 0.00002 |
S | 6 | V6F | Gtt | Ttt | 2 | 2 | AY.3.1 | 0.000171 |
S | 6 | V6I | Gtt | Att | 2 | 2 | AY.33 | 0.000134 |
S | 6 | V6F | Gtt | Ttt | 2 | 2 | AY.34.1 | 0.00102 |
S | 6 | V6F | Gtt | Ttt | 2 | 2 | AY.4.5 | 0.000215 |
S | 6 | V6A | gTt | gCt | 2 | 2 | AY.43 | 0.000009 |
S | 6 | V6L | Gtt | Ctt | 2 | 2 | AY.44 | 0.000012 |
S | 6 | V6V | gtT | gtC | 2 | 2 | AY.44 | 0.000012 |
S | 6 | V6I | Gtt | Att | 2 | 2 | AY.45 | 0.000243 |
S | 6 | V6V | gtT | gtG | 2 | 2 | AY.46.5 | 0.000397 |
S | 6 | V6F | Gtt | Ttt | 2 | 2 | AY.61 | 0.00021 |
S | 6 | V6I | Gtt | Att | 2 | 2 | AY.69 | 0.000373 |
S | 6 | V6F | Gtt | Ttt | 2 | 2 | AY.71 | 0.00095 |
S | 6 | V6F | Gtt | Ttt | 2 | 2 | AY.9.2 | 0.000073 |
S | 6 | V6F | Gtt | Ttt | 2 | 2 | AY.98 | 0.000158 |
S | 6 | V6A | gTt | gCt | 2 | 2 | B.1 | 0.000018 |
S | 6 | V6A | gTt | gCt | 2 | 2 | B.1.1.153 | 0.002191 |
S | 6 | V6F | Gtt | Ttt | 2 | 2 | B.1.1.220 | 0.003717 |
S | 6 | V6F | Gtt | Ttt | 2 | 2 | B.1.1.258 | 0.006515 |
S | 6 | V6F | Gtt | Ttt | 2 | 2 | B.1.1.306 | 0.000877 |
S | 6 | V6T | GTt | ACt | 2 | 2 | B.1.1.416 | 0.00181 |
S | 6 | V6V | gtT | gtC | 2 | 2 | B.1.160.7 | 0.004158 |
S | 6 | V6I | Gtt | Att | 2 | 2 | B.1.177 | 0.000026 |
S | 6 | V6del | GTT | --- | 2 | 2 | B.1.2 | 0.000018 |
S | 6 | V6V | gtT | gtC | 1 | 2 | B.1.2 | 0.000009 |
S | 6 | V6V | gtT | gtG | 1 | 2 | B.1.2 | 0.000009 |
S | 6 | V6F | Gtt | Ttt | 2 | 2 | B.1.221 | 0.000142 |
S | 6 | V6F | Gtt | Ttt | 2 | 2 | B.1.241 | 0.001623 |
S | 6 | V6F | Gtt | Ttt | 2 | 2 | B.1.258 | 0.000133 |
S | 6 | V6V | gtT | gtC | 2 | 2 | B.1.258 | 0.000133 |
S | 6 | V6F | Gtt | Ttt | 2 | 2 | B.1.265 | 0.002541 |
S | 6 | V6G | gTt | gGt | 2 | 2 | B.1.351 | 0.000059 |
S | 6 | V6A | gTt | gCt | 2 | 2 | B.1.351 | 0.000059 |
S | 6 | V6I | Gtt | Att | 2 | 2 | B.1.36 | 0.000292 |
S | 6 | V6F | Gtt | Ttt | 2 | 2 | B.1.36.8 | 0.002 |
S | 6 | V6del | GTT | --- | 2 | 2 | B.1.525 | 0.000226 |
S | 6 | V6F | Gtt | Ttt | 2 | 2 | B.1.595 | 0.000522 |
S | 6 | V6F | Gtt | Ttt | 2 | 2 | B.1.595.1 | 0.011696 |
S | 6 | V6F | Gtt | Ttt | 2 | 2 | B.1.609 | 0.000959 |
S | 6 | V6A | gTt | gCt | 2 | 2 | B.1.617.2 | 0.000008 |
S | 6 | V6I | Gtt | Att | 2 | 2 | B.1.618 | 0.008065 |
S | 6 | V6F | Gtt | Ttt | 2 | 2 | B.1.619 | 0.001742 |
S | 6 | V6F | Gtt | Ttt | 2 | 2 | B.1.621 | 0.000177 |
S | 6 | V6F | Gtt | Ttt | 2 | 2 | B.1.628 | 0.000705 |
S | 6 | V6F | Gtt | Ttt | 2 | 2 | D.2 | 0.00015 |
S | 6 | V6V | gtT | gtC | 2 | 2 | P.1 | 0.000032 |
S | 6 | V6I | Gtt | Att | 2 | 2 | P.2 | 0.000373 |
S | 6 | V6V | gtT | gtG | 2 | 2 | Q.8 | 0.00033 |
S | 6 | V6L | Gtt | Ctt | 1 | 1 | A.1 | 0.000282 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | A.2 | 0.000662 |
S | 6 | V6del | GTT | --- | 1 | 1 | A.2.4 | 0.003367 |
S | 6 | V6V | gtT | gtG | 1 | 1 | A.2.4 | 0.003367 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | AD.2 | 0.000219 |
S | 6 | V6N | GTt | AAt | 1 | 1 | All | 0 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | AY.10 | 0.00053 |
S | 6 | V6del | GTT | --- | 1 | 1 | AY.100 | 0.000046 |
S | 6 | V6del1 | gtT | gt- | 1 | 1 | AY.103 | 0.000006 |
S | 6 | V6del | GTT | --- | 1 | 1 | AY.103 | 0.000006 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | AY.105 | 0.000643 |
S | 6 | V6I | Gtt | Att | 1 | 1 | AY.107 | 0.000466 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | AY.108 | 0.001103 |
S | 6 | V6A | gTt | gCt | 1 | 1 | AY.113 | 0.000142 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | AY.114 | 0.000231 |
S | 6 | V6del | GTT | --- | 1 | 1 | AY.14 | 0.000088 |
S | 6 | V6L | Gtt | Ctt | 1 | 1 | AY.15 | 0.002222 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | AY.16 | 0.00038 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | AY.16.1 | 0.00047 |
S | 6 | V6I | Gtt | Att | 1 | 1 | AY.20 | 0.000039 |
S | 6 | V6A | gTt | gCt | 1 | 1 | AY.20 | 0.000039 |
S | 6 | V6V | gtT | gtC | 1 | 1 | AY.23 | 0.00007 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | AY.23.1 | 0.000417 |
S | 6 | V6A | gTt | gCt | 1 | 1 | AY.23.1 | 0.000417 |
S | 6 | V6A | gTt | gCt | 1 | 1 | AY.24 | 0.000431 |
S | 6 | V6G | gTt | gGt | 1 | 1 | AY.25 | 0.000006 |
S | 6 | V6A | gTt | gCt | 1 | 1 | AY.26 | 0.000028 |
S | 6 | V6L | Gtt | Ctt | 1 | 1 | AY.27 | 0.000065 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | AY.27 | 0.000065 |
S | 6 | V6L | Gtt | Ctt | 1 | 1 | AY.29 | 0.000016 |
S | 6 | V6A | gTt | gCt | 1 | 1 | AY.29 | 0.000016 |
S | 6 | V6V | gtT | gtG | 1 | 1 | AY.3 | 0.00001 |
S | 6 | V6del | GTT | --- | 1 | 1 | AY.3 | 0.00001 |
S | 6 | V6I | Gtt | Att | 1 | 1 | AY.3.1 | 0.000085 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | AY.30 | 0.000396 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | AY.33 | 0.000067 |
S | 6 | V6I | Gtt | Att | 1 | 1 | AY.35 | 0.000233 |
S | 6 | V6C | GTt | TGt | 1 | 1 | AY.36 | 0.000148 |
S | 6 | V6del | GTT | --- | 1 | 1 | AY.38 | 0.000499 |
S | 6 | V6I | Gtt | Att | 1 | 1 | AY.39.1 | 0.00004 |
S | 6 | V6del1 | Gtt | -tt | 1 | 1 | AY.4 | 0.000002 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 6 | V6del | GTT | --- | 1 | 1 | AY.4.3 | 0.000842 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | AY.41 | 0.000294 |
S | 6 | V6A | gTt | gCt | 1 | 1 | AY.42 | 0.00004 |
S | 6 | V6del | GTT | --- | 1 | 1 | AY.42 | 0.00004 |
S | 6 | V6del1 | Gtt | -tt | 1 | 1 | AY.43 | 0.000004 |
S | 6 | V6A | gTt | gCt | 1 | 1 | AY.46 | 0.000104 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | AY.46.1 | 0.001027 |
S | 6 | V6del1 | Gtt | -tt | 1 | 1 | AY.46.6 | 0.000072 |
S | 6 | V6A | gTt | gCt | 1 | 1 | AY.46.6 | 0.000072 |
S | 6 | V6I | Gtt | Att | 1 | 1 | AY.46.6 | 0.000072 |
S | 6 | V6V | gtT | gtA | 1 | 1 | AY.5 | 0.000021 |
S | 6 | V6A | gTt | gCt | 1 | 1 | AY.5 | 0.000021 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | AY.53 | 0.000288 |
S | 6 | V6V | gtT | gtA | 1 | 1 | AY.53 | 0.000288 |
S | 6 | V6del | GTT | --- | 1 | 1 | AY.54 | 0.000095 |
S | 6 | V6V | gtT | gtC | 1 | 1 | AY.55 | 0.000917 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | AY.55 | 0.000917 |
S | 6 | V6I | Gtt | Att | 1 | 1 | AY.59 | 0.00053 |
S | 6 | V6I | Gtt | Att | 1 | 1 | AY.6 | 0.000041 |
S | 6 | V6A | gTt | gCt | 1 | 1 | AY.61 | 0.000105 |
S | 6 | V6I | Gtt | Att | 1 | 1 | AY.67 | 0.000464 |
S | 6 | V6del | GTT | --- | 1 | 1 | AY.68 | 0.000274 |
S | 6 | V6A | gTt | gCt | 1 | 1 | AY.69 | 0.000187 |
S | 6 | V6V | gtT | gtC | 1 | 1 | AY.7.1 | 0.000113 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | AY.72 | 0.001361 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | AY.74 | 0.000116 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | AY.88 | 0.000884 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | AY.9.1 | 0.000084 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | AY.90 | 0.000684 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | AY.99.1 | 0.001553 |
S | 6 | V6A | gTt | gCt | 1 | 1 | AY.99.2 | 0.000092 |
S | 6 | V6L | Gtt | Ctt | 1 | 1 | B.1 | 0.000009 |
S | 6 | V6del1 | gTt | g-t | 1 | 1 | B.1 | 0.000009 |
S | 6 | V6G | gTt | gGt | 1 | 1 | B.1 | 0.000009 |
S | 6 | V6I | Gtt | Att | 1 | 1 | B.1.1 | 0.000018 |
S | 6 | V6G | gTt | gGt | 1 | 1 | B.1.1 | 0.000018 |
S | 6 | V6L | Gtt | Ctt | 1 | 1 | B.1.1 | 0.000018 |
S | 6 | V6I | Gtt | Att | 1 | 1 | B.1.1.10 | 0.001115 |
S | 6 | V6G | gTt | gGt | 1 | 1 | B.1.1.157 | 0.000913 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.1.163 | 0.007634 |
S | 6 | V6V | gtT | gtC | 1 | 1 | B.1.1.170 | 0.001247 |
S | 6 | V6E | gTT | gAG | 1 | 1 | B.1.1.214 | 0.000055 |
S | 6 | V6L | Gtt | Ctt | 1 | 1 | B.1.1.240 | 0.004695 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.1.241 | 0.00207 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.1.28 | 0.000311 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.1.283 | 0.023256 |
S | 6 | V6A | gTt | gCt | 1 | 1 | B.1.1.306 | 0.000438 |
S | 6 | V6del | GTT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.1.37 | 0.000193 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.1.378 | 0.007299 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.1.39 | 0.00051 |
S | 6 | V6V | gtT | gtC | 1 | 1 | B.1.1.39 | 0.00051 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.1.432 | 0.001266 |
S | 6 | V6del | GTT | --- | 1 | 1 | B.1.1.46 | 0.004367 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.1.50 | 0.000679 |
S | 6 | V6A | gTt | gCt | 1 | 1 | B.1.1.50 | 0.000679 |
S | 6 | V6A | gTt | gCt | 1 | 1 | B.1.1.519 | 0.00004 |
S | 6 | V6V | gtT | gtG | 1 | 1 | B.1.1.519 | 0.00004 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.1.56 | 0.017857 |
S | 6 | V6V | gtT | gtC | 1 | 1 | B.1.1.63 | 0.000386 |
S | 6 | V6del1 | Gtt | -tt | 1 | 1 | B.1.1.7 | 0.000001 |
S | 6 | V6D | gTt | gAt | 1 | 1 | B.1.1.7 | 0.000001 |
S | 6 | V6N | GTt | AAt | 1 | 1 | B.1.1.7 | 0.000001 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.1.70 | 0.000341 |
S | 6 | V6C | GTt | TGt | 1 | 1 | B.1.110.3 | 0.000718 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.111 | 0.001175 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.143 | 0.021277 |
S | 6 | V6C | GTt | TGt | 1 | 1 | B.1.160 | 0.000031 |
S | 6 | V6D | gTt | gAt | 1 | 1 | B.1.160 | 0.000031 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.160.12 | 0.00641 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.160.32 | 0.004292 |
S | 6 | V6V | gtT | gtG | 1 | 1 | B.1.177 | 0.000013 |
S | 6 | V6D | gTt | gAt | 1 | 1 | B.1.177 | 0.000013 |
S | 6 | V6del1 | Gtt | -tt | 1 | 1 | B.1.177.12 | 0.000152 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.177.16 | 0.000664 |
S | 6 | V6A | gTt | gCt | 1 | 1 | B.1.177.17 | 0.000821 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.177.17 | 0.000821 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.177.31 | 0.011494 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.177.4 | 0.000211 |
S | 6 | V6L | Gtt | Ctt | 1 | 1 | B.1.177.4 | 0.000211 |
S | 6 | V6del | GTT | --- | 1 | 1 | B.1.177.68 | 0.015152 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.177.73 | 0.000566 |
S | 6 | V6del | GTT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.177.86 | 0.000183 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.199 | 0.004132 |
S | 6 | V6del2 | gTT | g-- | 1 | 1 | B.1.2 | 0.000009 |
S | 6 | V6del | GTT | --- | 1 | 1 | B.1.232 | 0.000537 |
S | 6 | V6A | gTt | gCt | 1 | 1 | B.1.243 | 0.00007 |
S | 6 | V6del | GTT | --- | 1 | 1 | B.1.258.16 | 0.001637 |
S | 6 | V6V | gtT | gtC | 1 | 1 | B.1.311 | 0.000275 |
S | 6 | V6V | gtT | gtC | 1 | 1 | B.1.351 | 0.00003 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.356 | 0.001727 |
S | 6 | V6V | gtT | gtC | 1 | 1 | B.1.36 | 0.000146 |
S | 6 | V6A | gTt | gCt | 1 | 1 | B.1.36 | 0.000146 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.36.31 | 0.001751 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.36.39 | 0.002217 |
S | 6 | V6G | gTt | gGt | 1 | 1 | B.1.36.8 | 0.001 |
S | 6 | V6A | gTt | gCt | 1 | 1 | B.1.369 | 0.000285 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.369 | 0.000285 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.389 | 0.001002 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.396 | 0.000706 |
S | 6 | V6A | gTt | gCt | 1 | 1 | B.1.427 | 0.00005 |
S | 6 | V6A | gTt | gCt | 1 | 1 | B.1.428 | 0.00102 |
S | 6 | V6I | Gtt | Att | 1 | 1 | B.1.429 | 0.000024 |
S | 6 | V6del | GTT | --- | 1 | 1 | B.1.453 | 0.003236 |
S | 6 | V6del1 | gTt | g-t | 1 | 1 | B.1.459 | 0.004082 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.503 | 0.002488 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.510 | 0.026316 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.525 | 0.000113 |
S | 6 | V6del | GTT | --- | 1 | 1 | B.1.526 | 0.000024 |
S | 6 | V6V | gtT | gtC | 1 | 1 | B.1.527 | 0.003704 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.560 | 0.00463 |
S | 6 | V6V | gtT | gtC | 1 | 1 | B.1.565 | 0.00081 |
S | 6 | V6I | Gtt | Att | 1 | 1 | B.1.575 | 0.000303 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.580 | 0.004065 |
S | 6 | V6I | Gtt | Att | 1 | 1 | B.1.589 | 0.007576 |
S | 6 | V6del2 | GTt | --t | 1 | 1 | B.1.617.2 | 0.000004 |
S | 6 | V6del2 | gTT | g-- | 1 | 1 | B.1.617.3 | 0.002985 |
S | 6 | V6del | GTT | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 6 | V6A | gTt | gCt | 1 | 1 | B.1.620 | 0.000946 |
S | 6 | V6del1 | Gtt | -tt | 1 | 1 | B.1.621 | 0.000089 |
S | 6 | V6I | Gtt | Att | 1 | 1 | B.1.621 | 0.000089 |
S | 6 | V6del | GTT | --- | 1 | 1 | B.1.637 | 0.000073 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.1.97 | 0.025641 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.27 | 0.015385 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | B.6.1 | 0.026316 |
S | 6 | V6V | gtT | gtA | 1 | 1 | C.18 | 0.002591 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | C.30 | 0.001727 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | C.36.3.1 | 0.002717 |
S | 6 | V6G | gTt | gGt | 1 | 1 | D.2 | 0.000075 |
S | 6 | V6H | GTT | CAC | 1 | 1 | P.1 | 0.000016 |
S | 6 | V6del1 | gTt | g-t | 1 | 1 | P.1 | 0.000016 |
S | 6 | V6del | GTT | --- | 1 | 1 | P.1.10 | 0.000269 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | P.1.14 | 0.000048 |
S | 6 | V6A | gTt | gCt | 1 | 1 | P.1.14 | 0.000048 |
S | 6 | V6V | gtT | gtC | 1 | 1 | P.1.14 | 0.000048 |
S | 6 | V6L | Gtt | Ctt | 1 | 1 | P.1.4 | 0.000977 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | P.1.7 | 0.000319 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | P.2 | 0.000187 |
S | 6 | V6del | GTT | --- | 1 | 1 | Q.8 | 0.000165 |
S | 6 | V6F | Gtt | Ttt | 1 | 1 | W.1 | 0.008696 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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