CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 588 & Codon = acG

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S588T588TsynacAacG3883720.95876323324-23326

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S588T588TacAacG372388All0.000071
S588T588TacAacG339339AY.270.02194
S588T588TacAacG15AY.40.000002
S588T588TacAacG25B.1.1.70.000002
S588T588TacAacG55B.1.177.560.003338
S588T588TacAacG33B.10.000027
S588T588TacAacG33B.1.1600.000094
S588T588TacAacG12AY.250.000006
S588T588TacAacG22AY.450.000243
S588T588TacAacG12AY.50.000021
S588T588TacAacG22B.1.10.000036
S588T588TacAacG22B.1.110.30.001437
S588T588TacAacG22B.1.617.20.000008
S588T588TacAacG11AY.230.00007
S588T588TacAacG11AY.350.000233
S588T588TacAacG11AY.380.000499
S588T588TacAacG11AY.420.00004
S588T588TacAacG11AY.610.000105
S588T588TacAacG11B.1.1770.000013
S588T588TacAacG11B.1.20.000009
S588T588TacAacG11B.1.351.50.0006
S588T588TacAacG11P.10.000016

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.