CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 583 & Codon = gaT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S583E583DnonsyngaGgaT1258682770.65763523309-23311

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S583E583DgaGgaT827712586All0.001583
S583E583DgaGgaT29173630B.1.1.70.002611
S583E583DgaGgaT614709AY.40.000956
S583E583DgaGgaT1699B.1.177.190.001431
S583E583DgaGgaT483483B.1.6210.042755
S583E583DgaGgaT407478AY.430.001803
S583E583DgaGgaT390390B.1.177.300.979899
S583E583DgaGgaT70344B.1.1770.000922
S583E583DgaGgaT221341B.1.617.20.000832
S583E583DgaGgaT259259B.1.36.350.674479
S583E583DgaGgaT165210AY.1030.001024
S583E583DgaGgaT151206AY.250.000908
S583E583DgaGgaT171205B.1.20.001506
S583E583DgaGgaT135181P.10.002127
S583E583DgaGgaT115164AY.440.0007
S583E583DgaGgaT110133B.10.001008
S583E583DgaGgaT115115B.1.1.4620.991379
S583E583DgaGgaT8997AY.1020.00236
S583E583DgaGgaT4792B.1.2580.003128
S583E583DgaGgaT8080B.1.30.209424
S583E583DgaGgaT3773AY.1210.005007
S583E583DgaGgaT6970Q.80.011379
S583E583DgaGgaT5265B.1.1600.001622
S583E583DgaGgaT4364AY.98.10.002083
S583E583DgaGgaT6363B.1.258.70.120459
S583E583DgaGgaT5662B.1.2430.003897
S583E583DgaGgaT6060P.1.10.01906
S583E583DgaGgaT3759B.1.10.000671
S583E583DgaGgaT2951AY.4.20.000629
S583E583DgaGgaT3349AY.390.000815
S583E583DgaGgaT3248B.1.5260.000752
S583E583DgaGgaT4646AY.20.016382
S583E583DgaGgaT2745AY.30.000269
S583E583DgaGgaT1742AY.260.000481
S583E583DgaGgaT4041AY.420.001609
S583E583DgaGgaT2636B.1.3510.000773
S583E583DgaGgaT3334AY.200.001283
S583E583DgaGgaT3434B.1.36.80.034
S583E583DgaGgaT1132AY.1000.000506
S583E583DgaGgaT1831B.1.4290.000424
S583E583DgaGgaT2230AY.290.000347
S583E583DgaGgaT2328AY.330.001536
S583E583DgaGgaT2728AY.340.002618
S583E583DgaGgaT1927AY.50.000392
S583E583DgaGgaT2627B.1.177.810.004922
S583E583DgaGgaT1226AY.750.000672
S583E583DgaGgaT2526B.1.3690.007131
S583E583DgaGgaT724AY.39.10.000277
S583E583DgaGgaT2123D.20.001576
S583E583DgaGgaT1718AY.9.10.001423
S583E583DgaGgaT1818B.1.1.2040.054711
S583E583DgaGgaT1518B.1.2210.001065
S583E583DgaGgaT718B.1.36.170.003458
S583E583DgaGgaT1718P.1.140.000813
S583E583DgaGgaT1417AY.1190.000494
S583E583DgaGgaT1417AY.1200.000521
S583E583DgaGgaT1717AY.75.10.003065
S583E583DgaGgaT1616P.1.100.004312
S583E583DgaGgaT1315AY.9.20.000477
S583E583DgaGgaT1515B.1.5950.003914
S583E583DgaGgaT815C.370.000929
S583E583DgaGgaT1414AY.1110.002564
S583E583DgaGgaT1114AY.540.001049
S583E583DgaGgaT1214AY.60.000494
S583E583DgaGgaT1113AY.450.001339
S583E583DgaGgaT1212B.1.177.600.002621
S583E583DgaGgaT312P.1.150.000697
S583E583DgaGgaT711AY.230.000488
S583E583DgaGgaT711AY.3.10.000597
S583E583DgaGgaT711B.1.1.2140.000388
S583E583DgaGgaT1111B.1.1.490.192982
S583E583DgaGgaT911B.1.5960.000784
S583E583DgaGgaT810AY.1170.000676
S583E583DgaGgaT610AY.980.000474
S583E583DgaGgaT1010B.1.1.2650.031546
S583E583DgaGgaT1010B.1.1.330.004209
S583E583DgaGgaT79AY.46.60.000505
S583E583DgaGgaT89AY.90.000541
S583E583DgaGgaT99B.1.1060.28125
S583E583DgaGgaT39B.1.2340.000396
S583E583DgaGgaT78AY.1180.000439
S583E583DgaGgaT68AY.460.000624
S583E583DgaGgaT68B.1.1.5190.000238
S583E583DgaGgaT67AY.120.10.001926
S583E583DgaGgaT77AY.270.000453
S583E583DgaGgaT77AY.730.004657
S583E583DgaGgaT67AY.99.20.000553
S583E583DgaGgaT77B0.000895
S583E583DgaGgaT77B.1.1.2680.104478
S583E583DgaGgaT57B.1.6090.002397
S583E583DgaGgaT67C.36.30.003403
S583E583DgaGgaT47P.1.170.000647
S583E583DgaGgaT66AY.140.000528
S583E583DgaGgaT66AY.680.001642
S583E583DgaGgaT66AY.740.000694
S583E583DgaGgaT66B.1.177.440.003114
S583E583DgaGgaT56B.1.177.860.000917
S583E583DgaGgaT66B.1.3010.035503
S583E583DgaGgaT46B.1.351.20.00121
S583E583DgaGgaT66B.1.3630.077922
S583E583DgaGgaT66B.1.4330.019169
S583E583DgaGgaT46B.1.5250.000453
S583E583DgaGgaT36P.1.120.001452
S583E583DgaGgaT55A.2.5.10.024038
S583E583DgaGgaT55AY.1060.001674
S583E583DgaGgaT45AY.1160.001147
S583E583DgaGgaT45AY.370.001264
S583E583DgaGgaT35AY.46.20.001906
S583E583DgaGgaT45AY.470.000124
S583E583DgaGgaT55B.1.177.210.000382
S583E583DgaGgaT55B.1.177.50.006211
S583E583DgaGgaT55B.1.220.006588
S583E583DgaGgaT55B.1.4710.013661
S583E583DgaGgaT55B.1.4970.001574
S583E583DgaGgaT55B.1.6370.000365
S583E583DgaGgaT24AY.130.000322
S583E583DgaGgaT14AY.350.000233
S583E583DgaGgaT44AY.4.40.001637
S583E583DgaGgaT44AY.4.50.00043
S583E583DgaGgaT34AY.510.002727
S583E583DgaGgaT44AY.530.00115
S583E583DgaGgaT44AY.7.10.000451
S583E583DgaGgaT44AY.850.001709
S583E583DgaGgaT44AZ.30.006079
S583E583DgaGgaT44B.1.1.280.001245
S583E583DgaGgaT34B.1.1.2840.000322
S583E583DgaGgaT44B.1.1.3260.007042
S583E583DgaGgaT44B.1.1.700.001364
S583E583DgaGgaT44B.1.160.90.028777
S583E583DgaGgaT44B.1.258.170.000416
S583E583DgaGgaT44B.1.2650.005083
S583E583DgaGgaT14B.1.3060.005714
S583E583DgaGgaT44B.1.3490.002859
S583E583DgaGgaT24B.1.617.10.000258
S583E583DgaGgaT44Q.10.000505
S583E583DgaGgaT13A.2.50.000499
S583E583DgaGgaT33A.280.007937
S583E583DgaGgaT23AY.1050.001286
S583E583DgaGgaT13AY.16.10.00047
S583E583DgaGgaT33AY.320.001597
S583E583DgaGgaT33AY.46.50.000595
S583E583DgaGgaT13AY.5.40.000277
S583E583DgaGgaT33AY.690.00056
S583E583DgaGgaT33AY.930.000819
S583E583DgaGgaT33B.1.1.1350.014085
S583E583DgaGgaT33B.1.1.2980.002586
S583E583DgaGgaT33B.1.1.3520.09375
S583E583DgaGgaT33B.1.1420.008696
S583E583DgaGgaT33B.1.177.100.002634
S583E583DgaGgaT33B.1.177.120.000455
S583E583DgaGgaT23B.1.177.350.001382
S583E583DgaGgaT23B.1.177.70.00033
S583E583DgaGgaT33B.1.1990.012397
S583E583DgaGgaT13B.1.360.000146
S583E583DgaGgaT33B.1.36.10.003421
S583E583DgaGgaT23B.1.3660.009756
S583E583DgaGgaT13B.1.4000.000429
S583E583DgaGgaT23B.1.4360.002058
S583E583DgaGgaT33B.1.5160.005871
S583E583DgaGgaT33B.1.5610.001191
S583E583DgaGgaT13B.1.5650.00081
S583E583DgaGgaT13B.1.6280.000352
S583E583DgaGgaT22A0.000774
S583E583DgaGgaT22AY.1040.003968
S583E583DgaGgaT22AY.1140.000462
S583E583DgaGgaT22AY.240.000862
S583E583DgaGgaT22AY.4.2.10.000298
S583E583DgaGgaT22AY.410.000588
S583E583DgaGgaT12AY.5.30.000337
S583E583DgaGgaT12AY.550.000917
S583E583DgaGgaT22AY.570.001312
S583E583DgaGgaT22AY.70.000392
S583E583DgaGgaT22AY.940.000885
S583E583DgaGgaT12AY.99.10.001553
S583E583DgaGgaT12B.1.1.10.000327
S583E583DgaGgaT22B.1.1.2220.000408
S583E583DgaGgaT22B.1.1.2440.030769
S583E583DgaGgaT22B.1.1.2940.002532
S583E583DgaGgaT22B.1.1.3180.000604
S583E583DgaGgaT22B.1.1.4640.002946
S583E583DgaGgaT12B.1.110.30.000718
S583E583DgaGgaT12B.1.1570.002985
S583E583DgaGgaT22B.1.177.560.001335
S583E583DgaGgaT12B.1.177.570.000281
S583E583DgaGgaT22B.1.177.60.001953
S583E583DgaGgaT12B.1.177.760.002494
S583E583DgaGgaT12B.1.2360.002053
S583E583DgaGgaT22B.1.351.30.001753
S583E583DgaGgaT22B.1.6230.001073
S583E583DgaGgaT22C.360.001821
S583E583DgaGgaT22P.1.70.000639
S583E583DgaGgaT22P.1.80.009569
S583E583DgaGgaT12P.20.000187
S583E583DgaGgaT22Q.40.00091
S583E583DgaGgaT11A.20.000662
S583E583DgaGgaT11AD.20.000219
S583E583DgaGgaT11AY.1010.00049
S583E583DgaGgaT11AY.1080.001103
S583E583DgaGgaT11AY.1130.000142
S583E583DgaGgaT11AY.160.00038
S583E583DgaGgaT11AY.29.10.000221
S583E583DgaGgaT11AY.360.000148
S583E583DgaGgaT11AY.39.20.001541
S583E583DgaGgaT11AY.400.000964
S583E583DgaGgaT11AY.46.10.001027
S583E583DgaGgaT11AY.600.000938
S583E583DgaGgaT11AY.620.000436
S583E583DgaGgaT11AY.660.00107
S583E583DgaGgaT11AY.700.000209
S583E583DgaGgaT11AY.790.001211
S583E583DgaGgaT11AY.880.000884
S583E583DgaGgaT11AY.910.00073
S583E583DgaGgaT11AY.920.000287
S583E583DgaGgaT11AY.950.000761
S583E583DgaGgaT11AY.990.001049
S583E583DgaGgaT11B.1.1.1540.04
S583E583DgaGgaT11B.1.1.1960.005714
S583E583DgaGgaT11B.1.1.2050.003717
S583E583DgaGgaT11B.1.1.2160.00089
S583E583DgaGgaT11B.1.1.2890.002083
S583E583DgaGgaT11B.1.1.3110.000358
S583E583DgaGgaT11B.1.1.3150.008475
S583E583DgaGgaT11B.1.1.3160.000925
S583E583DgaGgaT11B.1.1.3390.010526
S583E583DgaGgaT11B.1.1.3690.000446
S583E583DgaGgaT11B.1.1.390.00051
S583E583DgaGgaT11B.1.1.3980.003226
S583E583DgaGgaT11B.1.1.4120.007634
S583E583DgaGgaT11B.1.1.4160.000905
S583E583DgaGgaT11B.1.1.500.000679
S583E583DgaGgaT11B.1.1.80.003584
S583E583DgaGgaT11B.1.1.890.006061
S583E583DgaGgaT11B.1.130.002375
S583E583DgaGgaT11B.1.1450.052632
S583E583DgaGgaT11B.1.1460.004237
S583E583DgaGgaT11B.1.177.110.001698
S583E583DgaGgaT11B.1.177.160.000664
S583E583DgaGgaT11B.1.177.450.000381
S583E583DgaGgaT11B.1.177.730.000566
S583E583DgaGgaT11B.1.177.770.000726
S583E583DgaGgaT11B.1.1810.019608
S583E583DgaGgaT11B.1.2100.002132
S583E583DgaGgaT11B.1.214.20.0006
S583E583DgaGgaT11B.1.221.10.002907
S583E583DgaGgaT11B.1.2350.002519
S583E583DgaGgaT11B.1.2410.000812
S583E583DgaGgaT11B.1.2790.000514
S583E583DgaGgaT11B.1.3200.001245
S583E583DgaGgaT11B.1.3560.001727
S583E583DgaGgaT11B.1.36.180.00042
S583E583DgaGgaT11B.1.36.260.002857
S583E583DgaGgaT11B.1.36.290.000517
S583E583DgaGgaT11B.1.36.380.001642
S583E583DgaGgaT11B.1.3610.001289
S583E583DgaGgaT11B.1.3910.001127
S583E583DgaGgaT11B.1.3980.002976
S583E583DgaGgaT11B.1.400.019608
S583E583DgaGgaT11B.1.400.10.015152
S583E583DgaGgaT11B.1.4020.009804
S583E583DgaGgaT11B.1.4090.000781
S583E583DgaGgaT11B.1.4220.000812
S583E583DgaGgaT11B.1.4250.002994
S583E583DgaGgaT11B.1.5050.004386
S583E583DgaGgaT11B.1.5560.007519
S583E583DgaGgaT11B.1.5580.004566
S583E583DgaGgaT11B.1.5760.000907
S583E583DgaGgaT11B.1.5770.000687
S583E583DgaGgaT11B.1.5850.027778
S583E583DgaGgaT11B.1.5900.004545
S583E583DgaGgaT11B.1.5970.00463
S583E583DgaGgaT11B.1.617.30.002985
S583E583DgaGgaT11B.1.6200.000946
S583E583DgaGgaT11B.1.6250.002353
S583E583DgaGgaT11B.1.910.002075
S583E583DgaGgaT11B.100.008264
S583E583DgaGgaT11B.400.000364
S583E583DgaGgaT11B.60.00091
S583E583DgaGgaT11P.60.003145
S583E583DgaGgaT11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.