CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 583 & Codon = gaC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S583E583DnonsyngaGgaC1258643090.34236523309-23311

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S583E583DgaGgaC430912586All0.000824
S583E583DgaGgaC7133630B.1.1.70.000638
S583E583DgaGgaC861861B.1.177.180.99884
S583E583DgaGgaC95709AY.40.000148
S583E583DgaGgaC698699B.1.177.190.998569
S583E583DgaGgaC659659B.1.177.201
S583E583DgaGgaC71478AY.430.000315
S583E583DgaGgaC274344B.1.1770.003608
S583E583DgaGgaC120341B.1.617.20.000452
S583E583DgaGgaC45210AY.1030.000279
S583E583DgaGgaC55206AY.250.000331
S583E583DgaGgaC34205B.1.20.000299
S583E583DgaGgaC46181P.10.000725
S583E583DgaGgaC49164AY.440.000298
S583E583DgaGgaC23133B.10.000211
S583E583DgaGgaC897AY.1020.000212
S583E583DgaGgaC4592B.1.2580.002995
S583E583DgaGgaC3673AY.1210.004871
S583E583DgaGgaC170Q.80.000165
S583E583DgaGgaC1365B.1.1600.000405
S583E583DgaGgaC2164AY.98.10.001017
S583E583DgaGgaC662B.1.2430.000418
S583E583DgaGgaC2259B.1.10.000399
S583E583DgaGgaC2251AY.4.20.000477
S583E583DgaGgaC1649AY.390.000395
S583E583DgaGgaC1648B.1.5260.000376
S583E583DgaGgaC1845AY.30.000179
S583E583DgaGgaC2542AY.260.000708
S583E583DgaGgaC141AY.420.00004
S583E583DgaGgaC1036B.1.3510.000297
S583E583DgaGgaC134AY.200.000039
S583E583DgaGgaC2132AY.1000.000966
S583E583DgaGgaC1331B.1.4290.000306
S583E583DgaGgaC830AY.290.000126
S583E583DgaGgaC528AY.330.000334
S583E583DgaGgaC128AY.340.000097
S583E583DgaGgaC827AY.50.000165
S583E583DgaGgaC127B.1.177.810.000189
S583E583DgaGgaC2626AY.650.013859
S583E583DgaGgaC1426AY.750.000784
S583E583DgaGgaC126B.1.3690.000285
S583E583DgaGgaC1724AY.39.10.000673
S583E583DgaGgaC223D.20.00015
S583E583DgaGgaC118AY.9.10.000084
S583E583DgaGgaC318B.1.2210.000213
S583E583DgaGgaC1118B.1.36.170.005435
S583E583DgaGgaC118P.1.140.000048
S583E583DgaGgaC317AY.1190.000106
S583E583DgaGgaC317AY.1200.000112
S583E583DgaGgaC215AY.9.20.000073
S583E583DgaGgaC715C.370.000812
S583E583DgaGgaC314AY.540.000286
S583E583DgaGgaC214AY.60.000082
S583E583DgaGgaC213AY.450.000243
S583E583DgaGgaC912P.1.150.002091
S583E583DgaGgaC411AY.230.000279
S583E583DgaGgaC411AY.3.10.000341
S583E583DgaGgaC411B.1.1.2140.000222
S583E583DgaGgaC211B.1.5960.000174
S583E583DgaGgaC210AY.1170.000169
S583E583DgaGgaC410AY.980.000316
S583E583DgaGgaC29AY.46.60.000144
S583E583DgaGgaC19AY.90.000068
S583E583DgaGgaC69B.1.2340.000792
S583E583DgaGgaC18AY.1180.000063
S583E583DgaGgaC28AY.460.000208
S583E583DgaGgaC28B.1.1.5190.000079
S583E583DgaGgaC17AY.120.10.000321
S583E583DgaGgaC17AY.99.20.000092
S583E583DgaGgaC27B.1.6090.000959
S583E583DgaGgaC17C.36.30.000567
S583E583DgaGgaC37P.1.170.000485
S583E583DgaGgaC16B.1.177.860.000183
S583E583DgaGgaC26B.1.351.20.000605
S583E583DgaGgaC26B.1.5250.000226
S583E583DgaGgaC36P.1.120.001452
S583E583DgaGgaC15AY.1160.000287
S583E583DgaGgaC15AY.370.000316
S583E583DgaGgaC25AY.46.20.001271
S583E583DgaGgaC15AY.470.000031
S583E583DgaGgaC55B.1.1.630.001929
S583E583DgaGgaC24AY.130.000322
S583E583DgaGgaC34AY.350.000699
S583E583DgaGgaC14AY.510.000909
S583E583DgaGgaC14B.1.1.2840.000107
S583E583DgaGgaC34B.1.3060.017143
S583E583DgaGgaC24B.1.617.10.000258
S583E583DgaGgaC44R.10.00036
S583E583DgaGgaC23A.2.50.000998
S583E583DgaGgaC13AY.1050.000643
S583E583DgaGgaC23AY.16.10.00094
S583E583DgaGgaC23AY.5.40.000553
S583E583DgaGgaC33B.1.1.2660.036585
S583E583DgaGgaC13B.1.177.350.000691
S583E583DgaGgaC13B.1.177.70.000165
S583E583DgaGgaC23B.1.360.000292
S583E583DgaGgaC13B.1.3660.004878
S583E583DgaGgaC23B.1.4000.000858
S583E583DgaGgaC13B.1.4360.001029
S583E583DgaGgaC23B.1.5650.001621
S583E583DgaGgaC23B.1.6280.000705
S583E583DgaGgaC33Q.30.000435
S583E583DgaGgaC12AY.5.30.000337
S583E583DgaGgaC12AY.550.000917
S583E583DgaGgaC22AY.610.00021
S583E583DgaGgaC12AY.99.10.001553
S583E583DgaGgaC12B.1.1.10.000327
S583E583DgaGgaC12B.1.110.30.000718
S583E583DgaGgaC12B.1.1570.002985
S583E583DgaGgaC12B.1.177.570.000281
S583E583DgaGgaC12B.1.177.760.002494
S583E583DgaGgaC12B.1.2360.002053
S583E583DgaGgaC22B.1.466.20.000782
S583E583DgaGgaC12P.20.000187
S583E583DgaGgaC11AE.10.011364
S583E583DgaGgaC11AP.10.001502
S583E583DgaGgaC11AY.1090.00074
S583E583DgaGgaC11AY.120.20.001285
S583E583DgaGgaC11AY.170.008197
S583E583DgaGgaC11AY.300.000396
S583E583DgaGgaC11AY.5.20.002463
S583E583DgaGgaC11AY.590.00053
S583E583DgaGgaC11AY.840.000437
S583E583DgaGgaC11AY.900.000684
S583E583DgaGgaC11B.1.1.3480.000796
S583E583DgaGgaC11B.1.1.3550.015385
S583E583DgaGgaC11B.1.1.3760.005952
S583E583DgaGgaC11B.1.1.590.006494
S583E583DgaGgaC11B.1.120.008
S583E583DgaGgaC11B.1.160.260.002421
S583E583DgaGgaC11B.1.160.270.015152
S583E583DgaGgaC11B.1.2370.004975
S583E583DgaGgaC11B.1.2400.000216
S583E583DgaGgaC11B.1.258.30.001675
S583E583DgaGgaC11B.1.4160.001269
S583E583DgaGgaC11B.1.4270.00005
S583E583DgaGgaC11B.1.5240.001406
S583E583DgaGgaC11B.1.5820.000491
S583E583DgaGgaC11C.390.018868
S583E583DgaGgaC11W.30.005263

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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