CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 583

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S583E583DnonsyngaGgaT1258682770.65763523309-23311
S583E583DnonsyngaGgaC1258643090.34236523309-23311
S583E583QnonsynGagCag986986123309-23311
S583E583EsyngaGgaA436436123309-23311
S583E583AnonsyngAggCg157157123309-23311
S583E583KnonsynGagAag8686123309-23311
S583E583GnonsyngAggGg25240.9623309-23311
S583E583GnonsyngAGgGA2510.0423309-23311
S583E583XnonsynGagTag1616123309-23311
S583E583deldelGAG---1313123309-23311
S583E583VnonsyngAggTg99123309-23311
S583E583YnonsynGaGTaT22123309-23311
S583E583del2delgAGg--210.523309-23311
S583E583del1delgAgg-g210.523309-23311
S583E583del2delGAg--g210.523309-23311
S583E583del1delGAg-Tg210.523309-23311
S583E583InonsynGAGATT11123309-23311

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S583E583DgaGgaT827712586All0.001583
S583E583DgaGgaC430912586All0.000824
S583E583DgaGgaT29173630B.1.1.70.002611
S583E583DgaGgaC7133630B.1.1.70.000638
S583E583QGagCag986986All0.000189
S583E583DgaGgaC861861B.1.177.180.99884
S583E583DgaGgaT614709AY.40.000956
S583E583DgaGgaC95709AY.40.000148
S583E583DgaGgaC698699B.1.177.190.998569
S583E583DgaGgaT1699B.1.177.190.001431
S583E583DgaGgaC659659B.1.177.201
S583E583DgaGgaT483483B.1.6210.042755
S583E583DgaGgaT407478AY.430.001803
S583E583DgaGgaC71478AY.430.000315
S583E583EgaGgaA436436All0.000083
S583E583DgaGgaT390390B.1.177.300.979899
S583E583DgaGgaC274344B.1.1770.003608
S583E583DgaGgaT70344B.1.1770.000922
S583E583DgaGgaT221341B.1.617.20.000832
S583E583DgaGgaC120341B.1.617.20.000452
S583E583DgaGgaT259259B.1.36.350.674479
S583E583DgaGgaT165210AY.1030.001024
S583E583DgaGgaC45210AY.1030.000279
S583E583DgaGgaT151206AY.250.000908
S583E583DgaGgaC55206AY.250.000331
S583E583DgaGgaT171205B.1.20.001506
S583E583DgaGgaC34205B.1.20.000299
S583E583DgaGgaT135181P.10.002127
S583E583DgaGgaC46181P.10.000725
S583E583DgaGgaT115164AY.440.0007
S583E583DgaGgaC49164AY.440.000298
S583E583AgAggCg157157All0.00003
S583E583QGagCag145145B.1.1.70.00013
S583E583QGagCag143143B.1.177.261
S583E583DgaGgaT110133B.10.001008
S583E583DgaGgaC23133B.10.000211
S583E583QGagCag127127AY.1200.004722
S583E583DgaGgaT115115B.1.1.4620.991379
S583E583DgaGgaT8997AY.1020.00236
S583E583DgaGgaC897AY.1020.000212
S583E583QGagCag9595B.1.1.1700.118454
S583E583AgAggCg9292B.1.1600.002869
S583E583DgaGgaT4792B.1.2580.003128
S583E583DgaGgaC4592B.1.2580.002995
S583E583KGagAag8686All0.000016
S583E583DgaGgaT8080B.1.30.209424
S583E583EgaGgaA7575B.1.20.00066
S583E583DgaGgaT3773AY.1210.005007
S583E583DgaGgaC3673AY.1210.004871
S583E583DgaGgaT6970Q.80.011379
S583E583DgaGgaC170Q.80.000165
S583E583DgaGgaT5265B.1.1600.001622
S583E583DgaGgaC1365B.1.1600.000405
S583E583DgaGgaT4364AY.98.10.002083
S583E583DgaGgaC2164AY.98.10.001017
S583E583DgaGgaT6363B.1.258.70.120459
S583E583DgaGgaT5662B.1.2430.003897
S583E583DgaGgaC662B.1.2430.000418
S583E583QGagCag6161AY.40.000095
S583E583QGagCag6161AY.70.011956
S583E583DgaGgaT6060P.1.10.01906
S583E583DgaGgaT3759B.1.10.000671
S583E583DgaGgaC2259B.1.10.000399
S583E583EgaGgaA5858B.1.1.2140.003217
S583E583DgaGgaT2951AY.4.20.000629
S583E583DgaGgaC2251AY.4.20.000477
S583E583DgaGgaT3349AY.390.000815
S583E583DgaGgaC1649AY.390.000395
S583E583DgaGgaT3248B.1.5260.000752
S583E583DgaGgaC1648B.1.5260.000376
S583E583QGagCag4848B.1.617.20.000181
S583E583DgaGgaT4646AY.20.016382
S583E583EgaGgaA4646B.1.617.20.000173
S583E583DgaGgaT2745AY.30.000269
S583E583DgaGgaC1845AY.30.000179
S583E583DgaGgaC2542AY.260.000708
S583E583DgaGgaT1742AY.260.000481
S583E583DgaGgaT4041AY.420.001609
S583E583DgaGgaC141AY.420.00004
S583E583EgaGgaA4141B.1.1.70.000037
S583E583DgaGgaT2636B.1.3510.000773
S583E583DgaGgaC1036B.1.3510.000297
S583E583DgaGgaT3334AY.200.001283
S583E583DgaGgaC134AY.200.000039
S583E583DgaGgaT3434B.1.36.80.034
S583E583DgaGgaC2132AY.1000.000966
S583E583DgaGgaT1132AY.1000.000506
S583E583KGagAag3232AY.40.00005
S583E583DgaGgaT1831B.1.4290.000424
S583E583DgaGgaC1331B.1.4290.000306
S583E583DgaGgaT2230AY.290.000347
S583E583DgaGgaC830AY.290.000126
S583E583DgaGgaT2328AY.330.001536
S583E583DgaGgaC528AY.330.000334
S583E583DgaGgaT2728AY.340.002618
S583E583DgaGgaC128AY.340.000097
S583E583DgaGgaT1927AY.50.000392
S583E583DgaGgaC827AY.50.000165
S583E583DgaGgaT2627B.1.177.810.004922
S583E583DgaGgaC127B.1.177.810.000189
S583E583QGagCag2626AY.30.000259
S583E583DgaGgaC2626AY.650.013859
S583E583DgaGgaC1426AY.750.000784
S583E583DgaGgaT1226AY.750.000672
S583E583QGagCag2626B.1.1.2220.005304
S583E583DgaGgaT2526B.1.3690.007131
S583E583DgaGgaC126B.1.3690.000285
S583E583GgAggGg2425All0.000005
S583E583GgAGgGA125All0
S583E583DgaGgaC1724AY.39.10.000673
S583E583DgaGgaT724AY.39.10.000277
S583E583EgaGgaA2424AY.40.000037
S583E583DgaGgaT2123D.20.001576
S583E583DgaGgaC223D.20.00015
S583E583AgAggCg2222B.1.1.70.00002
S583E583QGagCag2121AY.440.000128
S583E583EgaGgaA2020B.1.2580.001331
S583E583DgaGgaT1718AY.9.10.001423
S583E583DgaGgaC118AY.9.10.000084
S583E583DgaGgaT1818B.1.1.2040.054711
S583E583DgaGgaT1518B.1.2210.001065
S583E583DgaGgaC318B.1.2210.000213
S583E583DgaGgaC1118B.1.36.170.005435
S583E583DgaGgaT718B.1.36.170.003458
S583E583DgaGgaT1718P.1.140.000813
S583E583DgaGgaC118P.1.140.000048
S583E583DgaGgaT1417AY.1190.000494
S583E583DgaGgaC317AY.1190.000106
S583E583DgaGgaT1417AY.1200.000521
S583E583DgaGgaC317AY.1200.000112
S583E583DgaGgaT1717AY.75.10.003065
S583E583XGagTag1616All0.000003
S583E583QGagCag1616AY.250.000096
S583E583EgaGgaA1616AY.430.000071
S583E583DgaGgaT1616P.1.100.004312
S583E583AgAggCg1515AY.250.00009
S583E583DgaGgaT1315AY.9.20.000477
S583E583DgaGgaC215AY.9.20.000073
S583E583EgaGgaA1515B.10.000137
S583E583DgaGgaT1515B.1.5950.003914
S583E583DgaGgaT815C.370.000929
S583E583DgaGgaC715C.370.000812
S583E583DgaGgaT1414AY.1110.002564
S583E583EgaGgaA1414AY.250.000084
S583E583DgaGgaT1114AY.540.001049
S583E583DgaGgaC314AY.540.000286
S583E583DgaGgaT1214AY.60.000494
S583E583DgaGgaC214AY.60.000082
S583E583delGAG---1313All0.000002
S583E583DgaGgaT1113AY.450.001339
S583E583DgaGgaC213AY.450.000243
S583E583QGagCag1212AY.1030.000075
S583E583QGagCag1212AY.430.000053
S583E583QGagCag1212B.1.1770.000158
S583E583DgaGgaT1212B.1.177.600.002621
S583E583DgaGgaC912P.1.150.002091
S583E583DgaGgaT312P.1.150.000697
S583E583KGagAag1111AY.1180.000689
S583E583DgaGgaT711AY.230.000488
S583E583DgaGgaC411AY.230.000279
S583E583DgaGgaT711AY.3.10.000597
S583E583DgaGgaC411AY.3.10.000341
S583E583QGagCag1111AY.390.000272
S583E583DgaGgaT711B.1.1.2140.000388
S583E583DgaGgaC411B.1.1.2140.000222
S583E583DgaGgaT1111B.1.1.490.192982
S583E583DgaGgaT911B.1.5960.000784
S583E583DgaGgaC211B.1.5960.000174
S583E583DgaGgaT810AY.1170.000676
S583E583DgaGgaC210AY.1170.000169
S583E583QGagCag1010AY.1210.001353
S583E583DgaGgaT610AY.980.000474
S583E583DgaGgaC410AY.980.000316
S583E583QGagCag1010B.10.000092
S583E583DgaGgaT1010B.1.1.2650.031546
S583E583DgaGgaT1010B.1.1.330.004209
S583E583VgAggTg99All0.000002
S583E583EgaGgaA99AY.30.00009
S583E583DgaGgaT79AY.46.60.000505
S583E583DgaGgaC29AY.46.60.000144
S583E583DgaGgaT89AY.90.000541
S583E583DgaGgaC19AY.90.000068
S583E583KGagAag99B.1.10.000163
S583E583DgaGgaT99B.1.1060.28125
S583E583DgaGgaC69B.1.2340.000792
S583E583DgaGgaT39B.1.2340.000396
S583E583DgaGgaT78AY.1180.000439
S583E583DgaGgaC18AY.1180.000063
S583E583DgaGgaT68AY.460.000624
S583E583DgaGgaC28AY.460.000208
S583E583EgaGgaA88B.1.10.000145
S583E583DgaGgaT68B.1.1.5190.000238
S583E583DgaGgaC28B.1.1.5190.000079
S583E583KGagAag88B.1.1.70.000007
S583E583QGagCag88B.1.1600.00025
S583E583EgaGgaA77AY.1020.000186
S583E583EgaGgaA77AY.1060.002344
S583E583DgaGgaT67AY.120.10.001926
S583E583DgaGgaC17AY.120.10.000321
S583E583DgaGgaT77AY.270.000453
S583E583DgaGgaT77AY.730.004657
S583E583QGagCag77AY.75.10.001262
S583E583DgaGgaT67AY.99.20.000553
S583E583DgaGgaC17AY.99.20.000092
S583E583DgaGgaT77B0.000895
S583E583DgaGgaT77B.1.1.2680.104478
S583E583EgaGgaA77B.1.5260.000165
S583E583DgaGgaT57B.1.6090.002397
S583E583DgaGgaC27B.1.6090.000959
S583E583DgaGgaT67C.36.30.003403
S583E583DgaGgaC17C.36.30.000567
S583E583EgaGgaA77P.10.00011
S583E583DgaGgaT47P.1.170.000647
S583E583DgaGgaC37P.1.170.000485
S583E583DgaGgaT66AY.140.000528
S583E583DgaGgaT66AY.680.001642
S583E583DgaGgaT66AY.740.000694
S583E583AgAggCg66B.10.000055
S583E583QGagCag66B.1.10.000109
S583E583QGagCag66B.1.1.2160.005343
S583E583QGagCag66B.1.1.3180.001811
S583E583DgaGgaT66B.1.177.440.003114
S583E583DgaGgaT56B.1.177.860.000917
S583E583DgaGgaC16B.1.177.860.000183
S583E583DgaGgaT66B.1.3010.035503
S583E583DgaGgaT46B.1.351.20.00121
S583E583DgaGgaC26B.1.351.20.000605
S583E583DgaGgaT66B.1.3630.077922
S583E583DgaGgaT66B.1.4330.019169
S583E583DgaGgaT46B.1.5250.000453
S583E583DgaGgaC26B.1.5250.000226
S583E583KGagAag66B.1.617.20.000023
S583E583DgaGgaC36P.1.120.001452
S583E583DgaGgaT36P.1.120.001452
S583E583DgaGgaT55A.2.5.10.024038
S583E583DgaGgaT55AY.1060.001674
S583E583QGagCag55AY.1100.000563
S583E583DgaGgaT45AY.1160.001147
S583E583DgaGgaC15AY.1160.000287
S583E583DgaGgaT45AY.370.001264
S583E583DgaGgaC15AY.370.000316
S583E583KGagAag55AY.390.000124
S583E583AgAggCg55AY.40.000008
S583E583DgaGgaT35AY.46.20.001906
S583E583DgaGgaC25AY.46.20.001271
S583E583DgaGgaT45AY.470.000124
S583E583DgaGgaC15AY.470.000031
S583E583XGagTag55B.10.000046
S583E583DgaGgaC55B.1.1.630.001929
S583E583DgaGgaT55B.1.177.210.000382
S583E583DgaGgaT55B.1.177.50.006211
S583E583DgaGgaT55B.1.220.006588
S583E583QGagCag55B.1.3510.000149
S583E583DgaGgaT55B.1.4710.013661
S583E583DgaGgaT55B.1.4970.001574
S583E583DgaGgaT55B.1.6370.000365
S583E583QGagCag55P.10.000079
S583E583QGagCag44AY.1020.000106
S583E583EgaGgaA44AY.1140.000924
S583E583DgaGgaC24AY.130.000322
S583E583DgaGgaT24AY.130.000322
S583E583QGagCag44AY.290.000063
S583E583DgaGgaC34AY.350.000699
S583E583DgaGgaT14AY.350.000233
S583E583DgaGgaT44AY.4.40.001637
S583E583DgaGgaT44AY.4.50.00043
S583E583DgaGgaT34AY.510.002727
S583E583DgaGgaC14AY.510.000909
S583E583DgaGgaT44AY.530.00115
S583E583QGagCag44AY.60.000165
S583E583DgaGgaT44AY.7.10.000451
S583E583DgaGgaT44AY.850.001709
S583E583QGagCag44AY.910.002922
S583E583EgaGgaA44AY.980.000316
S583E583DgaGgaT44AZ.30.006079
S583E583DgaGgaT44B.1.1.280.001245
S583E583DgaGgaT34B.1.1.2840.000322
S583E583DgaGgaC14B.1.1.2840.000107
S583E583DgaGgaT44B.1.1.3260.007042
S583E583DgaGgaT44B.1.1.700.001364
S583E583DgaGgaT44B.1.160.90.028777
S583E583DgaGgaT44B.1.258.170.000416
S583E583DgaGgaT44B.1.2650.005083
S583E583DgaGgaC34B.1.3060.017143
S583E583DgaGgaT14B.1.3060.005714
S583E583DgaGgaT44B.1.3490.002859
S583E583EgaGgaA44B.1.3510.000119
S583E583DgaGgaT24B.1.617.10.000258
S583E583DgaGgaC24B.1.617.10.000258
S583E583AgAggCg44B.1.617.20.000015
S583E583QGagCag44B.1.6370.000292
S583E583DgaGgaT44Q.10.000505
S583E583DgaGgaC44R.10.00036
S583E583DgaGgaC23A.2.50.000998
S583E583DgaGgaT13A.2.50.000499
S583E583DgaGgaT33A.280.007937
S583E583EgaGgaA33AY.10.001187
S583E583DgaGgaT23AY.1050.001286
S583E583DgaGgaC13AY.1050.000643
S583E583QGagCag33AY.1190.000106
S583E583QGagCag33AY.120.000948
S583E583DgaGgaC23AY.16.10.00094
S583E583DgaGgaT13AY.16.10.00047
S583E583QGagCag33AY.230.000209
S583E583DgaGgaT33AY.320.001597
S583E583GgAggGg33AY.390.000074
S583E583DgaGgaT33AY.46.50.000595
S583E583DgaGgaC23AY.5.40.000553
S583E583DgaGgaT13AY.5.40.000277
S583E583DgaGgaT33AY.690.00056
S583E583GgAggGg33AY.750.000168
S583E583EgaGgaA33AY.75.10.000541
S583E583DgaGgaT33AY.930.000819
S583E583DgaGgaT33B.1.1.1350.014085
S583E583DgaGgaC33B.1.1.2660.036585
S583E583DgaGgaT33B.1.1.2980.002586
S583E583DgaGgaT33B.1.1.3520.09375
S583E583EgaGgaA33B.1.1.630.001157
S583E583DgaGgaT33B.1.1420.008696
S583E583DgaGgaT33B.1.177.100.002634
S583E583DgaGgaT33B.1.177.120.000455
S583E583DgaGgaT23B.1.177.350.001382
S583E583DgaGgaC13B.1.177.350.000691
S583E583DgaGgaT23B.1.177.70.00033
S583E583DgaGgaC13B.1.177.70.000165
S583E583DgaGgaT33B.1.1990.012397
S583E583QGagCag33B.1.20.000026
S583E583QGagCag33B.1.2400.000647
S583E583DgaGgaC23B.1.360.000292
S583E583DgaGgaT13B.1.360.000146
S583E583DgaGgaT33B.1.36.10.003421
S583E583DgaGgaT23B.1.3660.009756
S583E583DgaGgaC13B.1.3660.004878
S583E583DgaGgaC23B.1.4000.000858
S583E583DgaGgaT13B.1.4000.000429
S583E583DgaGgaT23B.1.4360.002058
S583E583DgaGgaC13B.1.4360.001029
S583E583DgaGgaT33B.1.5160.005871
S583E583DgaGgaT33B.1.5610.001191
S583E583DgaGgaC23B.1.5650.001621
S583E583DgaGgaT13B.1.5650.00081
S583E583EgaGgaA33B.1.5680.003333
S583E583GgAggGg33B.1.617.20.000011
S583E583DgaGgaC23B.1.6280.000705
S583E583DgaGgaT13B.1.6280.000352
S583E583QGagCag33B.3.10.004975
S583E583QGagCag33P.1.140.000143
S583E583EgaGgaA33P.20.00056
S583E583DgaGgaC33Q.30.000435
S583E583QGagCag33Q.80.000495
S583E583EgaGgaA33R.10.00027
S583E583DgaGgaT22A0.000774
S583E583YGaGTaT22All0
S583E583del1GAg-Tg12All0
S583E583del2gAGg--12All0
S583E583del1gAgg-g12All0
S583E583del2GAg--g12All0
S583E583QGagCag22AY.1000.000092
S583E583AgAggCg22AY.1020.000053
S583E583DgaGgaT22AY.1040.003968
S583E583DgaGgaT22AY.1140.000462
S583E583DgaGgaT22AY.240.000862
S583E583GgAggGg22AY.30.00002
S583E583EgaGgaA22AY.3.10.000171
S583E583QGagCag22AY.34.10.00102
S583E583EgaGgaA22AY.39.10.000079
S583E583GgAggGg22AY.40.000003
S583E583QGagCag22AY.4.20.000043
S583E583DgaGgaT22AY.4.2.10.000298
S583E583DgaGgaT22AY.410.000588
S583E583KGagAag22AY.430.000009
S583E583GgAggGg12AY.440.000006
S583E583GgAGgGA12AY.440.000006
S583E583QGagCag22AY.450.000243
S583E583EgaGgaA22AY.46.60.000144
S583E583EgaGgaA22AY.50.000041
S583E583DgaGgaT12AY.5.30.000337
S583E583DgaGgaC12AY.5.30.000337
S583E583DgaGgaT12AY.550.000917
S583E583DgaGgaC12AY.550.000917
S583E583DgaGgaT22AY.570.001312
S583E583DgaGgaC22AY.610.00021
S583E583DgaGgaT22AY.70.000392
S583E583EgaGgaA22AY.750.000112
S583E583AgAggCg22AY.9.20.000073
S583E583DgaGgaT22AY.940.000885
S583E583DgaGgaC12AY.99.10.001553
S583E583DgaGgaT12AY.99.10.001553
S583E583del2gAGg--12B.10.000009
S583E583del2GAg--g12B.10.000009
S583E583XGagTag22B.1.10.000036
S583E583DgaGgaC12B.1.1.10.000327
S583E583DgaGgaT12B.1.1.10.000327
S583E583DgaGgaT22B.1.1.2220.000408
S583E583DgaGgaT22B.1.1.2440.030769
S583E583DgaGgaT22B.1.1.2940.002532
S583E583DgaGgaT22B.1.1.3180.000604
S583E583QGagCag22B.1.1.3480.001592
S583E583DgaGgaT22B.1.1.4640.002946
S583E583QGagCag22B.1.1.5190.000079
S583E583GgAggGg22B.1.1.70.000002
S583E583delGAG---22B.1.1.70.000002
S583E583DgaGgaC12B.1.110.30.000718
S583E583DgaGgaT12B.1.110.30.000718
S583E583DgaGgaC12B.1.1570.002985
S583E583DgaGgaT12B.1.1570.002985
S583E583EgaGgaA22B.1.1600.000062
S583E583AgAggCg22B.1.160.80.002577
S583E583QGagCag22B.1.177.210.000153
S583E583DgaGgaT22B.1.177.560.001335
S583E583DgaGgaT12B.1.177.570.000281
S583E583DgaGgaC12B.1.177.570.000281
S583E583DgaGgaT22B.1.177.60.001953
S583E583DgaGgaC12B.1.177.760.002494
S583E583DgaGgaT12B.1.177.760.002494
S583E583XGagTag22B.1.20.000018
S583E583KGagAag22B.1.20.000018
S583E583EgaGgaA22B.1.221.40.008333
S583E583DgaGgaC12B.1.2360.002053
S583E583DgaGgaT12B.1.2360.002053
S583E583DgaGgaT22B.1.351.30.001753
S583E583EgaGgaA22B.1.36.210.00432
S583E583DgaGgaC22B.1.466.20.000782
S583E583QGagCag22B.1.617.10.000258
S583E583DgaGgaT22B.1.6230.001073
S583E583DgaGgaT22C.360.001821
S583E583EgaGgaA22D.20.00015
S583E583DgaGgaT22P.1.70.000639
S583E583DgaGgaT22P.1.80.009569
S583E583DgaGgaC12P.20.000187
S583E583DgaGgaT12P.20.000187
S583E583EgaGgaA22Q.10.000253
S583E583DgaGgaT22Q.40.00091
S583E583XGagTag11A0.000387
S583E583YGaGTaT11A0.000387
S583E583DgaGgaT11A.20.000662
S583E583QGagCag11A.2.50.000499
S583E583DgaGgaT11AD.20.000219
S583E583DgaGgaC11AE.10.011364
S583E583IGAGATT11All0
S583E583DgaGgaC11AP.10.001502
S583E583EgaGgaA11AY.1000.000046
S583E583DgaGgaT11AY.1010.00049
S583E583EgaGgaA11AY.1030.000006
S583E583GgAggGg11AY.1030.000006
S583E583DgaGgaT11AY.1080.001103
S583E583DgaGgaC11AY.1090.00074
S583E583KGagAag11AY.1090.00074
S583E583QGagCag11AY.1090.00074
S583E583QGagCag11AY.1110.000183
S583E583DgaGgaT11AY.1130.000142
S583E583QGagCag11AY.116.10.000311
S583E583del1gAgg-g11AY.1170.000085
S583E583QGagCag11AY.1170.000085
S583E583EgaGgaA11AY.1170.000085
S583E583QGagCag11AY.1180.000063
S583E583VgAggTg11AY.1180.000063
S583E583EgaGgaA11AY.1190.000035
S583E583DgaGgaC11AY.120.20.001285
S583E583EgaGgaA11AY.1210.000135
S583E583DgaGgaT11AY.160.00038
S583E583DgaGgaC11AY.170.008197
S583E583QGagCag11AY.190.00114
S583E583EgaGgaA11AY.230.00007
S583E583KGagAag11AY.23.10.000417
S583E583QGagCag11AY.240.000431
S583E583VgAggTg11AY.250.000006
S583E583KGagAag11AY.250.000006
S583E583GgAggGg11AY.250.000006
S583E583KGagAag11AY.260.000028
S583E583EgaGgaA11AY.260.000028
S583E583QGagCag11AY.260.000028
S583E583AgAggCg11AY.290.000016
S583E583EgaGgaA11AY.290.000016
S583E583DgaGgaT11AY.29.10.000221
S583E583DgaGgaC11AY.300.000396
S583E583QGagCag11AY.320.000532
S583E583DgaGgaT11AY.360.000148
S583E583delGAG---11AY.380.000499
S583E583QGagCag11AY.39.10.00004
S583E583DgaGgaT11AY.39.20.001541
S583E583delGAG---11AY.40.000002
S583E583XGagTag11AY.40.000002
S583E583del1GAg-Tg11AY.40.000002
S583E583VgAggTg11AY.40.000002
S583E583KGagAag11AY.4.20.000022
S583E583QGagCag11AY.4.50.000107
S583E583DgaGgaT11AY.400.000964
S583E583EgaGgaA11AY.410.000294
S583E583GgAggGg11AY.430.000004
S583E583delGAG---11AY.430.000004
S583E583DgaGgaT11AY.46.10.001027
S583E583EgaGgaA11AY.46.40.000165
S583E583AgAggCg11AY.46.60.000072
S583E583GgAggGg11AY.470.000031
S583E583EgaGgaA11AY.470.000031
S583E583QGagCag11AY.470.000031
S583E583DgaGgaC11AY.5.20.002463
S583E583QGagCag11AY.500.000799
S583E583XGagTag11AY.520.000814
S583E583KGagAag11AY.540.000095
S583E583EgaGgaA11AY.560.001605
S583E583DgaGgaC11AY.590.00053
S583E583DgaGgaT11AY.600.000938
S583E583DgaGgaT11AY.620.000436
S583E583QGagCag11AY.650.000533
S583E583DgaGgaT11AY.660.00107
S583E583delGAG---11AY.660.00107
S583E583DgaGgaT11AY.700.000209
S583E583QGagCag11AY.740.000116
S583E583QGagCag11AY.750.000056
S583E583GgAggGg11AY.75.10.00018
S583E583DgaGgaT11AY.790.001211
S583E583EgaGgaA11AY.840.000437
S583E583DgaGgaC11AY.840.000437
S583E583DgaGgaT11AY.880.000884
S583E583QGagCag11AY.880.000884
S583E583KGagAag11AY.890.004902
S583E583QGagCag11AY.9.20.000037
S583E583QGagCag11AY.900.000684
S583E583DgaGgaC11AY.900.000684
S583E583DgaGgaT11AY.910.00073
S583E583EgaGgaA11AY.920.000287
S583E583DgaGgaT11AY.920.000287
S583E583delGAG---11AY.930.000273
S583E583EgaGgaA11AY.930.000273
S583E583DgaGgaT11AY.950.000761
S583E583EgaGgaA11AY.960.002075
S583E583QGagCag11AY.980.000079
S583E583DgaGgaT11AY.990.001049
S583E583KGagAag11B.10.000009
S583E583YGaGTaT11B.10.000009
S583E583AgAggCg11B.1.10.000018
S583E583GgAggGg11B.1.1.10.000327
S583E583delGAG---11B.1.1.1390.022727
S583E583DgaGgaT11B.1.1.1540.04
S583E583DgaGgaT11B.1.1.1960.005714
S583E583DgaGgaT11B.1.1.2050.003717
S583E583DgaGgaT11B.1.1.2160.00089
S583E583QGagCag11B.1.1.280.000311
S583E583EgaGgaA11B.1.1.280.000311
S583E583DgaGgaT11B.1.1.2890.002083
S583E583EgaGgaA11B.1.1.2940.001266
S583E583QGagCag11B.1.1.3020.002075
S583E583VgAggTg11B.1.1.3100.015152
S583E583DgaGgaT11B.1.1.3110.000358
S583E583DgaGgaT11B.1.1.3150.008475
S583E583DgaGgaT11B.1.1.3160.000925
S583E583QGagCag11B.1.1.3170.000412
S583E583DgaGgaT11B.1.1.3390.010526
S583E583DgaGgaC11B.1.1.3480.000796
S583E583DgaGgaC11B.1.1.3550.015385
S583E583DgaGgaT11B.1.1.3690.000446
S583E583DgaGgaC11B.1.1.3760.005952
S583E583DgaGgaT11B.1.1.390.00051
S583E583AgAggCg11B.1.1.390.00051
S583E583DgaGgaT11B.1.1.3980.003226
S583E583DgaGgaT11B.1.1.4120.007634
S583E583DgaGgaT11B.1.1.4160.000905
S583E583EgaGgaA11B.1.1.450.014085
S583E583EgaGgaA11B.1.1.4640.001473
S583E583DgaGgaT11B.1.1.500.000679
S583E583EgaGgaA11B.1.1.5190.00004
S583E583QGagCag11B.1.1.5260.003546
S583E583DgaGgaC11B.1.1.590.006494
S583E583VgAggTg11B.1.1.70.000001
S583E583XGagTag11B.1.1.70.000001
S583E583DgaGgaT11B.1.1.80.003584
S583E583DgaGgaT11B.1.1.890.006061
S583E583DgaGgaC11B.1.120.008
S583E583DgaGgaT11B.1.130.002375
S583E583DgaGgaT11B.1.1450.052632
S583E583DgaGgaT11B.1.1460.004237
S583E583DgaGgaC11B.1.160.260.002421
S583E583DgaGgaC11B.1.160.270.015152
S583E583VgAggTg11B.1.1770.000013
S583E583KGagAag11B.1.1770.000013
S583E583EgaGgaA11B.1.1770.000013
S583E583DgaGgaT11B.1.177.110.001698
S583E583DgaGgaT11B.1.177.160.000664
S583E583DgaGgaT11B.1.177.450.000381
S583E583QGagCag11B.1.177.450.000381
S583E583QGagCag11B.1.177.610.043478
S583E583DgaGgaT11B.1.177.730.000566
S583E583DgaGgaT11B.1.177.770.000726
S583E583DgaGgaT11B.1.1810.019608
S583E583GgAggGg11B.1.20.000009
S583E583VgAggTg11B.1.2060.000816
S583E583DgaGgaT11B.1.2100.002132
S583E583DgaGgaT11B.1.214.20.0006
S583E583DgaGgaT11B.1.221.10.002907
S583E583delGAG---11B.1.2340.000132
S583E583DgaGgaT11B.1.2350.002519
S583E583QGagCag11B.1.2360.002053
S583E583DgaGgaC11B.1.2370.004975
S583E583DgaGgaC11B.1.2400.000216
S583E583DgaGgaT11B.1.2410.000812
S583E583QGagCag11B.1.2580.000067
S583E583QGagCag11B.1.258.170.000104
S583E583AgAggCg11B.1.258.240.010753
S583E583DgaGgaC11B.1.258.30.001675
S583E583DgaGgaT11B.1.2790.000514
S583E583DgaGgaT11B.1.3200.001245
S583E583QGagCag11B.1.351.20.000303
S583E583XGagTag11B.1.351.30.000876
S583E583DgaGgaT11B.1.3560.001727
S583E583DgaGgaT11B.1.36.180.00042
S583E583DgaGgaT11B.1.36.260.002857
S583E583QGagCag11B.1.36.290.000517
S583E583DgaGgaT11B.1.36.290.000517
S583E583DgaGgaT11B.1.36.380.001642
S583E583KGagAag11B.1.36.80.001
S583E583DgaGgaT11B.1.3610.001289
S583E583VgAggTg11B.1.3620.001541
S583E583EgaGgaA11B.1.3770.004566
S583E583DgaGgaT11B.1.3910.001127
S583E583QGagCag11B.1.3960.000706
S583E583DgaGgaT11B.1.3980.002976
S583E583DgaGgaT11B.1.400.019608
S583E583DgaGgaT11B.1.400.10.015152
S583E583DgaGgaT11B.1.4020.009804
S583E583DgaGgaT11B.1.4090.000781
S583E583DgaGgaC11B.1.4160.001269
S583E583DgaGgaT11B.1.4220.000812
S583E583DgaGgaT11B.1.4250.002994
S583E583EgaGgaA11B.1.4260.001009
S583E583DgaGgaC11B.1.4270.00005
S583E583EgaGgaA11B.1.4270.00005
S583E583EgaGgaA11B.1.4360.001029
S583E583DgaGgaT11B.1.5050.004386
S583E583EgaGgaA11B.1.5090.000866
S583E583DgaGgaC11B.1.5240.001406
S583E583EgaGgaA11B.1.5250.000113
S583E583QGagCag11B.1.5250.000113
S583E583QGagCag11B.1.5260.000024
S583E583delGAG---11B.1.5260.000024
S583E583AgAggCg11B.1.5260.000024
S583E583DgaGgaT11B.1.5560.007519
S583E583DgaGgaT11B.1.5580.004566
S583E583KGagAag11B.1.5610.000397
S583E583QGagCag11B.1.5650.00081
S583E583DgaGgaT11B.1.5760.000907
S583E583DgaGgaT11B.1.5770.000687
S583E583DgaGgaC11B.1.5820.000491
S583E583DgaGgaT11B.1.5850.027778
S583E583EgaGgaA11B.1.5900.004545
S583E583DgaGgaT11B.1.5900.004545
S583E583DgaGgaT11B.1.5970.00463
S583E583QGagCag11B.1.6090.000479
S583E583IGAGATT11B.1.6090.000479
S583E583delGAG---11B.1.617.20.000004
S583E583VgAggTg11B.1.617.20.000004
S583E583DgaGgaT11B.1.617.30.002985
S583E583DgaGgaT11B.1.6200.000946
S583E583delGAG---11B.1.6200.000946
S583E583EgaGgaA11B.1.6210.000089
S583E583QGagCag11B.1.6210.000089
S583E583DgaGgaT11B.1.6250.002353
S583E583EgaGgaA11B.1.6280.000352
S583E583EgaGgaA11B.1.6370.000073
S583E583DgaGgaT11B.1.910.002075
S583E583DgaGgaT11B.100.008264
S583E583DgaGgaT11B.400.000364
S583E583DgaGgaT11B.60.00091
S583E583AgAggCg11C.350.000774
S583E583QGagCag11C.360.000911
S583E583DgaGgaC11C.390.018868
S583E583QGagCag11D.20.000075
S583E583XGagTag11D.20.000075
S583E583XGagTag11P.1.140.000048
S583E583GgAggGg11P.1.40.000977
S583E583QGagCag11P.1.70.000319
S583E583QGagCag11P.20.000187
S583E583DgaGgaT11P.60.003145
S583E583DgaGgaT11Q.70.001111
S583E583delGAG---11Q.80.000165
S583E583DgaGgaC11W.30.005263

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.