CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 583 | E583D | nonsyn | gaG | gaT | 12586 | 8277 | 0.657635 | 23309-23311 | |
S | 583 | E583D | nonsyn | gaG | gaC | 12586 | 4309 | 0.342365 | 23309-23311 | |
S | 583 | E583Q | nonsyn | Gag | Cag | 986 | 986 | 1 | 23309-23311 | |
S | 583 | E583E | syn | gaG | gaA | 436 | 436 | 1 | 23309-23311 | |
S | 583 | E583A | nonsyn | gAg | gCg | 157 | 157 | 1 | 23309-23311 | |
S | 583 | E583K | nonsyn | Gag | Aag | 86 | 86 | 1 | 23309-23311 | |
S | 583 | E583G | nonsyn | gAg | gGg | 25 | 24 | 0.96 | 23309-23311 | |
S | 583 | E583G | nonsyn | gAG | gGA | 25 | 1 | 0.04 | 23309-23311 | |
S | 583 | E583X | nonsyn | Gag | Tag | 16 | 16 | 1 | 23309-23311 | |
S | 583 | E583del | del | GAG | --- | 13 | 13 | 1 | 23309-23311 | |
S | 583 | E583V | nonsyn | gAg | gTg | 9 | 9 | 1 | 23309-23311 | |
S | 583 | E583Y | nonsyn | GaG | TaT | 2 | 2 | 1 | 23309-23311 | |
S | 583 | E583del2 | del | gAG | g-- | 2 | 1 | 0.5 | 23309-23311 | |
S | 583 | E583del1 | del | gAg | g-g | 2 | 1 | 0.5 | 23309-23311 | |
S | 583 | E583del2 | del | GAg | --g | 2 | 1 | 0.5 | 23309-23311 | |
S | 583 | E583del1 | del | GAg | -Tg | 2 | 1 | 0.5 | 23309-23311 | |
S | 583 | E583I | nonsyn | GAG | ATT | 1 | 1 | 1 | 23309-23311 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 583 | E583D | gaG | gaT | 8277 | 12586 | All | 0.001583 |
S | 583 | E583D | gaG | gaC | 4309 | 12586 | All | 0.000824 |
S | 583 | E583D | gaG | gaT | 2917 | 3630 | B.1.1.7 | 0.002611 |
S | 583 | E583D | gaG | gaC | 713 | 3630 | B.1.1.7 | 0.000638 |
S | 583 | E583Q | Gag | Cag | 986 | 986 | All | 0.000189 |
S | 583 | E583D | gaG | gaC | 861 | 861 | B.1.177.18 | 0.99884 |
S | 583 | E583D | gaG | gaT | 614 | 709 | AY.4 | 0.000956 |
S | 583 | E583D | gaG | gaC | 95 | 709 | AY.4 | 0.000148 |
S | 583 | E583D | gaG | gaC | 698 | 699 | B.1.177.19 | 0.998569 |
S | 583 | E583D | gaG | gaT | 1 | 699 | B.1.177.19 | 0.001431 |
S | 583 | E583D | gaG | gaC | 659 | 659 | B.1.177.20 | 1 |
S | 583 | E583D | gaG | gaT | 483 | 483 | B.1.621 | 0.042755 |
S | 583 | E583D | gaG | gaT | 407 | 478 | AY.43 | 0.001803 |
S | 583 | E583D | gaG | gaC | 71 | 478 | AY.43 | 0.000315 |
S | 583 | E583E | gaG | gaA | 436 | 436 | All | 0.000083 |
S | 583 | E583D | gaG | gaT | 390 | 390 | B.1.177.30 | 0.979899 |
S | 583 | E583D | gaG | gaC | 274 | 344 | B.1.177 | 0.003608 |
S | 583 | E583D | gaG | gaT | 70 | 344 | B.1.177 | 0.000922 |
S | 583 | E583D | gaG | gaT | 221 | 341 | B.1.617.2 | 0.000832 |
S | 583 | E583D | gaG | gaC | 120 | 341 | B.1.617.2 | 0.000452 |
S | 583 | E583D | gaG | gaT | 259 | 259 | B.1.36.35 | 0.674479 |
S | 583 | E583D | gaG | gaT | 165 | 210 | AY.103 | 0.001024 |
S | 583 | E583D | gaG | gaC | 45 | 210 | AY.103 | 0.000279 |
S | 583 | E583D | gaG | gaT | 151 | 206 | AY.25 | 0.000908 |
S | 583 | E583D | gaG | gaC | 55 | 206 | AY.25 | 0.000331 |
S | 583 | E583D | gaG | gaT | 171 | 205 | B.1.2 | 0.001506 |
S | 583 | E583D | gaG | gaC | 34 | 205 | B.1.2 | 0.000299 |
S | 583 | E583D | gaG | gaT | 135 | 181 | P.1 | 0.002127 |
S | 583 | E583D | gaG | gaC | 46 | 181 | P.1 | 0.000725 |
S | 583 | E583D | gaG | gaT | 115 | 164 | AY.44 | 0.0007 |
S | 583 | E583D | gaG | gaC | 49 | 164 | AY.44 | 0.000298 |
S | 583 | E583A | gAg | gCg | 157 | 157 | All | 0.00003 |
S | 583 | E583Q | Gag | Cag | 145 | 145 | B.1.1.7 | 0.00013 |
S | 583 | E583Q | Gag | Cag | 143 | 143 | B.1.177.26 | 1 |
S | 583 | E583D | gaG | gaT | 110 | 133 | B.1 | 0.001008 |
S | 583 | E583D | gaG | gaC | 23 | 133 | B.1 | 0.000211 |
S | 583 | E583Q | Gag | Cag | 127 | 127 | AY.120 | 0.004722 |
S | 583 | E583D | gaG | gaT | 115 | 115 | B.1.1.462 | 0.991379 |
S | 583 | E583D | gaG | gaT | 89 | 97 | AY.102 | 0.00236 |
S | 583 | E583D | gaG | gaC | 8 | 97 | AY.102 | 0.000212 |
S | 583 | E583Q | Gag | Cag | 95 | 95 | B.1.1.170 | 0.118454 |
S | 583 | E583A | gAg | gCg | 92 | 92 | B.1.160 | 0.002869 |
S | 583 | E583D | gaG | gaT | 47 | 92 | B.1.258 | 0.003128 |
S | 583 | E583D | gaG | gaC | 45 | 92 | B.1.258 | 0.002995 |
S | 583 | E583K | Gag | Aag | 86 | 86 | All | 0.000016 |
S | 583 | E583D | gaG | gaT | 80 | 80 | B.1.3 | 0.209424 |
S | 583 | E583E | gaG | gaA | 75 | 75 | B.1.2 | 0.00066 |
S | 583 | E583D | gaG | gaT | 37 | 73 | AY.121 | 0.005007 |
S | 583 | E583D | gaG | gaC | 36 | 73 | AY.121 | 0.004871 |
S | 583 | E583D | gaG | gaT | 69 | 70 | Q.8 | 0.011379 |
S | 583 | E583D | gaG | gaC | 1 | 70 | Q.8 | 0.000165 |
S | 583 | E583D | gaG | gaT | 52 | 65 | B.1.160 | 0.001622 |
S | 583 | E583D | gaG | gaC | 13 | 65 | B.1.160 | 0.000405 |
S | 583 | E583D | gaG | gaT | 43 | 64 | AY.98.1 | 0.002083 |
S | 583 | E583D | gaG | gaC | 21 | 64 | AY.98.1 | 0.001017 |
S | 583 | E583D | gaG | gaT | 63 | 63 | B.1.258.7 | 0.120459 |
S | 583 | E583D | gaG | gaT | 56 | 62 | B.1.243 | 0.003897 |
S | 583 | E583D | gaG | gaC | 6 | 62 | B.1.243 | 0.000418 |
S | 583 | E583Q | Gag | Cag | 61 | 61 | AY.4 | 0.000095 |
S | 583 | E583Q | Gag | Cag | 61 | 61 | AY.7 | 0.011956 |
S | 583 | E583D | gaG | gaT | 60 | 60 | P.1.1 | 0.01906 |
S | 583 | E583D | gaG | gaT | 37 | 59 | B.1.1 | 0.000671 |
S | 583 | E583D | gaG | gaC | 22 | 59 | B.1.1 | 0.000399 |
S | 583 | E583E | gaG | gaA | 58 | 58 | B.1.1.214 | 0.003217 |
S | 583 | E583D | gaG | gaT | 29 | 51 | AY.4.2 | 0.000629 |
S | 583 | E583D | gaG | gaC | 22 | 51 | AY.4.2 | 0.000477 |
S | 583 | E583D | gaG | gaT | 33 | 49 | AY.39 | 0.000815 |
S | 583 | E583D | gaG | gaC | 16 | 49 | AY.39 | 0.000395 |
S | 583 | E583D | gaG | gaT | 32 | 48 | B.1.526 | 0.000752 |
S | 583 | E583D | gaG | gaC | 16 | 48 | B.1.526 | 0.000376 |
S | 583 | E583Q | Gag | Cag | 48 | 48 | B.1.617.2 | 0.000181 |
S | 583 | E583D | gaG | gaT | 46 | 46 | AY.2 | 0.016382 |
S | 583 | E583E | gaG | gaA | 46 | 46 | B.1.617.2 | 0.000173 |
S | 583 | E583D | gaG | gaT | 27 | 45 | AY.3 | 0.000269 |
S | 583 | E583D | gaG | gaC | 18 | 45 | AY.3 | 0.000179 |
S | 583 | E583D | gaG | gaC | 25 | 42 | AY.26 | 0.000708 |
S | 583 | E583D | gaG | gaT | 17 | 42 | AY.26 | 0.000481 |
S | 583 | E583D | gaG | gaT | 40 | 41 | AY.42 | 0.001609 |
S | 583 | E583D | gaG | gaC | 1 | 41 | AY.42 | 0.00004 |
S | 583 | E583E | gaG | gaA | 41 | 41 | B.1.1.7 | 0.000037 |
S | 583 | E583D | gaG | gaT | 26 | 36 | B.1.351 | 0.000773 |
S | 583 | E583D | gaG | gaC | 10 | 36 | B.1.351 | 0.000297 |
S | 583 | E583D | gaG | gaT | 33 | 34 | AY.20 | 0.001283 |
S | 583 | E583D | gaG | gaC | 1 | 34 | AY.20 | 0.000039 |
S | 583 | E583D | gaG | gaT | 34 | 34 | B.1.36.8 | 0.034 |
S | 583 | E583D | gaG | gaC | 21 | 32 | AY.100 | 0.000966 |
S | 583 | E583D | gaG | gaT | 11 | 32 | AY.100 | 0.000506 |
S | 583 | E583K | Gag | Aag | 32 | 32 | AY.4 | 0.00005 |
S | 583 | E583D | gaG | gaT | 18 | 31 | B.1.429 | 0.000424 |
S | 583 | E583D | gaG | gaC | 13 | 31 | B.1.429 | 0.000306 |
S | 583 | E583D | gaG | gaT | 22 | 30 | AY.29 | 0.000347 |
S | 583 | E583D | gaG | gaC | 8 | 30 | AY.29 | 0.000126 |
S | 583 | E583D | gaG | gaT | 23 | 28 | AY.33 | 0.001536 |
S | 583 | E583D | gaG | gaC | 5 | 28 | AY.33 | 0.000334 |
S | 583 | E583D | gaG | gaT | 27 | 28 | AY.34 | 0.002618 |
S | 583 | E583D | gaG | gaC | 1 | 28 | AY.34 | 0.000097 |
S | 583 | E583D | gaG | gaT | 19 | 27 | AY.5 | 0.000392 |
S | 583 | E583D | gaG | gaC | 8 | 27 | AY.5 | 0.000165 |
S | 583 | E583D | gaG | gaT | 26 | 27 | B.1.177.81 | 0.004922 |
S | 583 | E583D | gaG | gaC | 1 | 27 | B.1.177.81 | 0.000189 |
S | 583 | E583Q | Gag | Cag | 26 | 26 | AY.3 | 0.000259 |
S | 583 | E583D | gaG | gaC | 26 | 26 | AY.65 | 0.013859 |
S | 583 | E583D | gaG | gaC | 14 | 26 | AY.75 | 0.000784 |
S | 583 | E583D | gaG | gaT | 12 | 26 | AY.75 | 0.000672 |
S | 583 | E583Q | Gag | Cag | 26 | 26 | B.1.1.222 | 0.005304 |
S | 583 | E583D | gaG | gaT | 25 | 26 | B.1.369 | 0.007131 |
S | 583 | E583D | gaG | gaC | 1 | 26 | B.1.369 | 0.000285 |
S | 583 | E583G | gAg | gGg | 24 | 25 | All | 0.000005 |
S | 583 | E583G | gAG | gGA | 1 | 25 | All | 0 |
S | 583 | E583D | gaG | gaC | 17 | 24 | AY.39.1 | 0.000673 |
S | 583 | E583D | gaG | gaT | 7 | 24 | AY.39.1 | 0.000277 |
S | 583 | E583E | gaG | gaA | 24 | 24 | AY.4 | 0.000037 |
S | 583 | E583D | gaG | gaT | 21 | 23 | D.2 | 0.001576 |
S | 583 | E583D | gaG | gaC | 2 | 23 | D.2 | 0.00015 |
S | 583 | E583A | gAg | gCg | 22 | 22 | B.1.1.7 | 0.00002 |
S | 583 | E583Q | Gag | Cag | 21 | 21 | AY.44 | 0.000128 |
S | 583 | E583E | gaG | gaA | 20 | 20 | B.1.258 | 0.001331 |
S | 583 | E583D | gaG | gaT | 17 | 18 | AY.9.1 | 0.001423 |
S | 583 | E583D | gaG | gaC | 1 | 18 | AY.9.1 | 0.000084 |
S | 583 | E583D | gaG | gaT | 18 | 18 | B.1.1.204 | 0.054711 |
S | 583 | E583D | gaG | gaT | 15 | 18 | B.1.221 | 0.001065 |
S | 583 | E583D | gaG | gaC | 3 | 18 | B.1.221 | 0.000213 |
S | 583 | E583D | gaG | gaC | 11 | 18 | B.1.36.17 | 0.005435 |
S | 583 | E583D | gaG | gaT | 7 | 18 | B.1.36.17 | 0.003458 |
S | 583 | E583D | gaG | gaT | 17 | 18 | P.1.14 | 0.000813 |
S | 583 | E583D | gaG | gaC | 1 | 18 | P.1.14 | 0.000048 |
S | 583 | E583D | gaG | gaT | 14 | 17 | AY.119 | 0.000494 |
S | 583 | E583D | gaG | gaC | 3 | 17 | AY.119 | 0.000106 |
S | 583 | E583D | gaG | gaT | 14 | 17 | AY.120 | 0.000521 |
S | 583 | E583D | gaG | gaC | 3 | 17 | AY.120 | 0.000112 |
S | 583 | E583D | gaG | gaT | 17 | 17 | AY.75.1 | 0.003065 |
S | 583 | E583X | Gag | Tag | 16 | 16 | All | 0.000003 |
S | 583 | E583Q | Gag | Cag | 16 | 16 | AY.25 | 0.000096 |
S | 583 | E583E | gaG | gaA | 16 | 16 | AY.43 | 0.000071 |
S | 583 | E583D | gaG | gaT | 16 | 16 | P.1.10 | 0.004312 |
S | 583 | E583A | gAg | gCg | 15 | 15 | AY.25 | 0.00009 |
S | 583 | E583D | gaG | gaT | 13 | 15 | AY.9.2 | 0.000477 |
S | 583 | E583D | gaG | gaC | 2 | 15 | AY.9.2 | 0.000073 |
S | 583 | E583E | gaG | gaA | 15 | 15 | B.1 | 0.000137 |
S | 583 | E583D | gaG | gaT | 15 | 15 | B.1.595 | 0.003914 |
S | 583 | E583D | gaG | gaT | 8 | 15 | C.37 | 0.000929 |
S | 583 | E583D | gaG | gaC | 7 | 15 | C.37 | 0.000812 |
S | 583 | E583D | gaG | gaT | 14 | 14 | AY.111 | 0.002564 |
S | 583 | E583E | gaG | gaA | 14 | 14 | AY.25 | 0.000084 |
S | 583 | E583D | gaG | gaT | 11 | 14 | AY.54 | 0.001049 |
S | 583 | E583D | gaG | gaC | 3 | 14 | AY.54 | 0.000286 |
S | 583 | E583D | gaG | gaT | 12 | 14 | AY.6 | 0.000494 |
S | 583 | E583D | gaG | gaC | 2 | 14 | AY.6 | 0.000082 |
S | 583 | E583del | GAG | --- | 13 | 13 | All | 0.000002 |
S | 583 | E583D | gaG | gaT | 11 | 13 | AY.45 | 0.001339 |
S | 583 | E583D | gaG | gaC | 2 | 13 | AY.45 | 0.000243 |
S | 583 | E583Q | Gag | Cag | 12 | 12 | AY.103 | 0.000075 |
S | 583 | E583Q | Gag | Cag | 12 | 12 | AY.43 | 0.000053 |
S | 583 | E583Q | Gag | Cag | 12 | 12 | B.1.177 | 0.000158 |
S | 583 | E583D | gaG | gaT | 12 | 12 | B.1.177.60 | 0.002621 |
S | 583 | E583D | gaG | gaC | 9 | 12 | P.1.15 | 0.002091 |
S | 583 | E583D | gaG | gaT | 3 | 12 | P.1.15 | 0.000697 |
S | 583 | E583K | Gag | Aag | 11 | 11 | AY.118 | 0.000689 |
S | 583 | E583D | gaG | gaT | 7 | 11 | AY.23 | 0.000488 |
S | 583 | E583D | gaG | gaC | 4 | 11 | AY.23 | 0.000279 |
S | 583 | E583D | gaG | gaT | 7 | 11 | AY.3.1 | 0.000597 |
S | 583 | E583D | gaG | gaC | 4 | 11 | AY.3.1 | 0.000341 |
S | 583 | E583Q | Gag | Cag | 11 | 11 | AY.39 | 0.000272 |
S | 583 | E583D | gaG | gaT | 7 | 11 | B.1.1.214 | 0.000388 |
S | 583 | E583D | gaG | gaC | 4 | 11 | B.1.1.214 | 0.000222 |
S | 583 | E583D | gaG | gaT | 11 | 11 | B.1.1.49 | 0.192982 |
S | 583 | E583D | gaG | gaT | 9 | 11 | B.1.596 | 0.000784 |
S | 583 | E583D | gaG | gaC | 2 | 11 | B.1.596 | 0.000174 |
S | 583 | E583D | gaG | gaT | 8 | 10 | AY.117 | 0.000676 |
S | 583 | E583D | gaG | gaC | 2 | 10 | AY.117 | 0.000169 |
S | 583 | E583Q | Gag | Cag | 10 | 10 | AY.121 | 0.001353 |
S | 583 | E583D | gaG | gaT | 6 | 10 | AY.98 | 0.000474 |
S | 583 | E583D | gaG | gaC | 4 | 10 | AY.98 | 0.000316 |
S | 583 | E583Q | Gag | Cag | 10 | 10 | B.1 | 0.000092 |
S | 583 | E583D | gaG | gaT | 10 | 10 | B.1.1.265 | 0.031546 |
S | 583 | E583D | gaG | gaT | 10 | 10 | B.1.1.33 | 0.004209 |
S | 583 | E583V | gAg | gTg | 9 | 9 | All | 0.000002 |
S | 583 | E583E | gaG | gaA | 9 | 9 | AY.3 | 0.00009 |
S | 583 | E583D | gaG | gaT | 7 | 9 | AY.46.6 | 0.000505 |
S | 583 | E583D | gaG | gaC | 2 | 9 | AY.46.6 | 0.000144 |
S | 583 | E583D | gaG | gaT | 8 | 9 | AY.9 | 0.000541 |
S | 583 | E583D | gaG | gaC | 1 | 9 | AY.9 | 0.000068 |
S | 583 | E583K | Gag | Aag | 9 | 9 | B.1.1 | 0.000163 |
S | 583 | E583D | gaG | gaT | 9 | 9 | B.1.106 | 0.28125 |
S | 583 | E583D | gaG | gaC | 6 | 9 | B.1.234 | 0.000792 |
S | 583 | E583D | gaG | gaT | 3 | 9 | B.1.234 | 0.000396 |
S | 583 | E583D | gaG | gaT | 7 | 8 | AY.118 | 0.000439 |
S | 583 | E583D | gaG | gaC | 1 | 8 | AY.118 | 0.000063 |
S | 583 | E583D | gaG | gaT | 6 | 8 | AY.46 | 0.000624 |
S | 583 | E583D | gaG | gaC | 2 | 8 | AY.46 | 0.000208 |
S | 583 | E583E | gaG | gaA | 8 | 8 | B.1.1 | 0.000145 |
S | 583 | E583D | gaG | gaT | 6 | 8 | B.1.1.519 | 0.000238 |
S | 583 | E583D | gaG | gaC | 2 | 8 | B.1.1.519 | 0.000079 |
S | 583 | E583K | Gag | Aag | 8 | 8 | B.1.1.7 | 0.000007 |
S | 583 | E583Q | Gag | Cag | 8 | 8 | B.1.160 | 0.00025 |
S | 583 | E583E | gaG | gaA | 7 | 7 | AY.102 | 0.000186 |
S | 583 | E583E | gaG | gaA | 7 | 7 | AY.106 | 0.002344 |
S | 583 | E583D | gaG | gaT | 6 | 7 | AY.120.1 | 0.001926 |
S | 583 | E583D | gaG | gaC | 1 | 7 | AY.120.1 | 0.000321 |
S | 583 | E583D | gaG | gaT | 7 | 7 | AY.27 | 0.000453 |
S | 583 | E583D | gaG | gaT | 7 | 7 | AY.73 | 0.004657 |
S | 583 | E583Q | Gag | Cag | 7 | 7 | AY.75.1 | 0.001262 |
S | 583 | E583D | gaG | gaT | 6 | 7 | AY.99.2 | 0.000553 |
S | 583 | E583D | gaG | gaC | 1 | 7 | AY.99.2 | 0.000092 |
S | 583 | E583D | gaG | gaT | 7 | 7 | B | 0.000895 |
S | 583 | E583D | gaG | gaT | 7 | 7 | B.1.1.268 | 0.104478 |
S | 583 | E583E | gaG | gaA | 7 | 7 | B.1.526 | 0.000165 |
S | 583 | E583D | gaG | gaT | 5 | 7 | B.1.609 | 0.002397 |
S | 583 | E583D | gaG | gaC | 2 | 7 | B.1.609 | 0.000959 |
S | 583 | E583D | gaG | gaT | 6 | 7 | C.36.3 | 0.003403 |
S | 583 | E583D | gaG | gaC | 1 | 7 | C.36.3 | 0.000567 |
S | 583 | E583E | gaG | gaA | 7 | 7 | P.1 | 0.00011 |
S | 583 | E583D | gaG | gaT | 4 | 7 | P.1.17 | 0.000647 |
S | 583 | E583D | gaG | gaC | 3 | 7 | P.1.17 | 0.000485 |
S | 583 | E583D | gaG | gaT | 6 | 6 | AY.14 | 0.000528 |
S | 583 | E583D | gaG | gaT | 6 | 6 | AY.68 | 0.001642 |
S | 583 | E583D | gaG | gaT | 6 | 6 | AY.74 | 0.000694 |
S | 583 | E583A | gAg | gCg | 6 | 6 | B.1 | 0.000055 |
S | 583 | E583Q | Gag | Cag | 6 | 6 | B.1.1 | 0.000109 |
S | 583 | E583Q | Gag | Cag | 6 | 6 | B.1.1.216 | 0.005343 |
S | 583 | E583Q | Gag | Cag | 6 | 6 | B.1.1.318 | 0.001811 |
S | 583 | E583D | gaG | gaT | 6 | 6 | B.1.177.44 | 0.003114 |
S | 583 | E583D | gaG | gaT | 5 | 6 | B.1.177.86 | 0.000917 |
S | 583 | E583D | gaG | gaC | 1 | 6 | B.1.177.86 | 0.000183 |
S | 583 | E583D | gaG | gaT | 6 | 6 | B.1.301 | 0.035503 |
S | 583 | E583D | gaG | gaT | 4 | 6 | B.1.351.2 | 0.00121 |
S | 583 | E583D | gaG | gaC | 2 | 6 | B.1.351.2 | 0.000605 |
S | 583 | E583D | gaG | gaT | 6 | 6 | B.1.363 | 0.077922 |
S | 583 | E583D | gaG | gaT | 6 | 6 | B.1.433 | 0.019169 |
S | 583 | E583D | gaG | gaT | 4 | 6 | B.1.525 | 0.000453 |
S | 583 | E583D | gaG | gaC | 2 | 6 | B.1.525 | 0.000226 |
S | 583 | E583K | Gag | Aag | 6 | 6 | B.1.617.2 | 0.000023 |
S | 583 | E583D | gaG | gaC | 3 | 6 | P.1.12 | 0.001452 |
S | 583 | E583D | gaG | gaT | 3 | 6 | P.1.12 | 0.001452 |
S | 583 | E583D | gaG | gaT | 5 | 5 | A.2.5.1 | 0.024038 |
S | 583 | E583D | gaG | gaT | 5 | 5 | AY.106 | 0.001674 |
S | 583 | E583Q | Gag | Cag | 5 | 5 | AY.110 | 0.000563 |
S | 583 | E583D | gaG | gaT | 4 | 5 | AY.116 | 0.001147 |
S | 583 | E583D | gaG | gaC | 1 | 5 | AY.116 | 0.000287 |
S | 583 | E583D | gaG | gaT | 4 | 5 | AY.37 | 0.001264 |
S | 583 | E583D | gaG | gaC | 1 | 5 | AY.37 | 0.000316 |
S | 583 | E583K | Gag | Aag | 5 | 5 | AY.39 | 0.000124 |
S | 583 | E583A | gAg | gCg | 5 | 5 | AY.4 | 0.000008 |
S | 583 | E583D | gaG | gaT | 3 | 5 | AY.46.2 | 0.001906 |
S | 583 | E583D | gaG | gaC | 2 | 5 | AY.46.2 | 0.001271 |
S | 583 | E583D | gaG | gaT | 4 | 5 | AY.47 | 0.000124 |
S | 583 | E583D | gaG | gaC | 1 | 5 | AY.47 | 0.000031 |
S | 583 | E583X | Gag | Tag | 5 | 5 | B.1 | 0.000046 |
S | 583 | E583D | gaG | gaC | 5 | 5 | B.1.1.63 | 0.001929 |
S | 583 | E583D | gaG | gaT | 5 | 5 | B.1.177.21 | 0.000382 |
S | 583 | E583D | gaG | gaT | 5 | 5 | B.1.177.5 | 0.006211 |
S | 583 | E583D | gaG | gaT | 5 | 5 | B.1.22 | 0.006588 |
S | 583 | E583Q | Gag | Cag | 5 | 5 | B.1.351 | 0.000149 |
S | 583 | E583D | gaG | gaT | 5 | 5 | B.1.471 | 0.013661 |
S | 583 | E583D | gaG | gaT | 5 | 5 | B.1.497 | 0.001574 |
S | 583 | E583D | gaG | gaT | 5 | 5 | B.1.637 | 0.000365 |
S | 583 | E583Q | Gag | Cag | 5 | 5 | P.1 | 0.000079 |
S | 583 | E583Q | Gag | Cag | 4 | 4 | AY.102 | 0.000106 |
S | 583 | E583E | gaG | gaA | 4 | 4 | AY.114 | 0.000924 |
S | 583 | E583D | gaG | gaC | 2 | 4 | AY.13 | 0.000322 |
S | 583 | E583D | gaG | gaT | 2 | 4 | AY.13 | 0.000322 |
S | 583 | E583Q | Gag | Cag | 4 | 4 | AY.29 | 0.000063 |
S | 583 | E583D | gaG | gaC | 3 | 4 | AY.35 | 0.000699 |
S | 583 | E583D | gaG | gaT | 1 | 4 | AY.35 | 0.000233 |
S | 583 | E583D | gaG | gaT | 4 | 4 | AY.4.4 | 0.001637 |
S | 583 | E583D | gaG | gaT | 4 | 4 | AY.4.5 | 0.00043 |
S | 583 | E583D | gaG | gaT | 3 | 4 | AY.51 | 0.002727 |
S | 583 | E583D | gaG | gaC | 1 | 4 | AY.51 | 0.000909 |
S | 583 | E583D | gaG | gaT | 4 | 4 | AY.53 | 0.00115 |
S | 583 | E583Q | Gag | Cag | 4 | 4 | AY.6 | 0.000165 |
S | 583 | E583D | gaG | gaT | 4 | 4 | AY.7.1 | 0.000451 |
S | 583 | E583D | gaG | gaT | 4 | 4 | AY.85 | 0.001709 |
S | 583 | E583Q | Gag | Cag | 4 | 4 | AY.91 | 0.002922 |
S | 583 | E583E | gaG | gaA | 4 | 4 | AY.98 | 0.000316 |
S | 583 | E583D | gaG | gaT | 4 | 4 | AZ.3 | 0.006079 |
S | 583 | E583D | gaG | gaT | 4 | 4 | B.1.1.28 | 0.001245 |
S | 583 | E583D | gaG | gaT | 3 | 4 | B.1.1.284 | 0.000322 |
S | 583 | E583D | gaG | gaC | 1 | 4 | B.1.1.284 | 0.000107 |
S | 583 | E583D | gaG | gaT | 4 | 4 | B.1.1.326 | 0.007042 |
S | 583 | E583D | gaG | gaT | 4 | 4 | B.1.1.70 | 0.001364 |
S | 583 | E583D | gaG | gaT | 4 | 4 | B.1.160.9 | 0.028777 |
S | 583 | E583D | gaG | gaT | 4 | 4 | B.1.258.17 | 0.000416 |
S | 583 | E583D | gaG | gaT | 4 | 4 | B.1.265 | 0.005083 |
S | 583 | E583D | gaG | gaC | 3 | 4 | B.1.306 | 0.017143 |
S | 583 | E583D | gaG | gaT | 1 | 4 | B.1.306 | 0.005714 |
S | 583 | E583D | gaG | gaT | 4 | 4 | B.1.349 | 0.002859 |
S | 583 | E583E | gaG | gaA | 4 | 4 | B.1.351 | 0.000119 |
S | 583 | E583D | gaG | gaT | 2 | 4 | B.1.617.1 | 0.000258 |
S | 583 | E583D | gaG | gaC | 2 | 4 | B.1.617.1 | 0.000258 |
S | 583 | E583A | gAg | gCg | 4 | 4 | B.1.617.2 | 0.000015 |
S | 583 | E583Q | Gag | Cag | 4 | 4 | B.1.637 | 0.000292 |
S | 583 | E583D | gaG | gaT | 4 | 4 | Q.1 | 0.000505 |
S | 583 | E583D | gaG | gaC | 4 | 4 | R.1 | 0.00036 |
S | 583 | E583D | gaG | gaC | 2 | 3 | A.2.5 | 0.000998 |
S | 583 | E583D | gaG | gaT | 1 | 3 | A.2.5 | 0.000499 |
S | 583 | E583D | gaG | gaT | 3 | 3 | A.28 | 0.007937 |
S | 583 | E583E | gaG | gaA | 3 | 3 | AY.1 | 0.001187 |
S | 583 | E583D | gaG | gaT | 2 | 3 | AY.105 | 0.001286 |
S | 583 | E583D | gaG | gaC | 1 | 3 | AY.105 | 0.000643 |
S | 583 | E583Q | Gag | Cag | 3 | 3 | AY.119 | 0.000106 |
S | 583 | E583Q | Gag | Cag | 3 | 3 | AY.12 | 0.000948 |
S | 583 | E583D | gaG | gaC | 2 | 3 | AY.16.1 | 0.00094 |
S | 583 | E583D | gaG | gaT | 1 | 3 | AY.16.1 | 0.00047 |
S | 583 | E583Q | Gag | Cag | 3 | 3 | AY.23 | 0.000209 |
S | 583 | E583D | gaG | gaT | 3 | 3 | AY.32 | 0.001597 |
S | 583 | E583G | gAg | gGg | 3 | 3 | AY.39 | 0.000074 |
S | 583 | E583D | gaG | gaT | 3 | 3 | AY.46.5 | 0.000595 |
S | 583 | E583D | gaG | gaC | 2 | 3 | AY.5.4 | 0.000553 |
S | 583 | E583D | gaG | gaT | 1 | 3 | AY.5.4 | 0.000277 |
S | 583 | E583D | gaG | gaT | 3 | 3 | AY.69 | 0.00056 |
S | 583 | E583G | gAg | gGg | 3 | 3 | AY.75 | 0.000168 |
S | 583 | E583E | gaG | gaA | 3 | 3 | AY.75.1 | 0.000541 |
S | 583 | E583D | gaG | gaT | 3 | 3 | AY.93 | 0.000819 |
S | 583 | E583D | gaG | gaT | 3 | 3 | B.1.1.135 | 0.014085 |
S | 583 | E583D | gaG | gaC | 3 | 3 | B.1.1.266 | 0.036585 |
S | 583 | E583D | gaG | gaT | 3 | 3 | B.1.1.298 | 0.002586 |
S | 583 | E583D | gaG | gaT | 3 | 3 | B.1.1.352 | 0.09375 |
S | 583 | E583E | gaG | gaA | 3 | 3 | B.1.1.63 | 0.001157 |
S | 583 | E583D | gaG | gaT | 3 | 3 | B.1.142 | 0.008696 |
S | 583 | E583D | gaG | gaT | 3 | 3 | B.1.177.10 | 0.002634 |
S | 583 | E583D | gaG | gaT | 3 | 3 | B.1.177.12 | 0.000455 |
S | 583 | E583D | gaG | gaT | 2 | 3 | B.1.177.35 | 0.001382 |
S | 583 | E583D | gaG | gaC | 1 | 3 | B.1.177.35 | 0.000691 |
S | 583 | E583D | gaG | gaT | 2 | 3 | B.1.177.7 | 0.00033 |
S | 583 | E583D | gaG | gaC | 1 | 3 | B.1.177.7 | 0.000165 |
S | 583 | E583D | gaG | gaT | 3 | 3 | B.1.199 | 0.012397 |
S | 583 | E583Q | Gag | Cag | 3 | 3 | B.1.2 | 0.000026 |
S | 583 | E583Q | Gag | Cag | 3 | 3 | B.1.240 | 0.000647 |
S | 583 | E583D | gaG | gaC | 2 | 3 | B.1.36 | 0.000292 |
S | 583 | E583D | gaG | gaT | 1 | 3 | B.1.36 | 0.000146 |
S | 583 | E583D | gaG | gaT | 3 | 3 | B.1.36.1 | 0.003421 |
S | 583 | E583D | gaG | gaT | 2 | 3 | B.1.366 | 0.009756 |
S | 583 | E583D | gaG | gaC | 1 | 3 | B.1.366 | 0.004878 |
S | 583 | E583D | gaG | gaC | 2 | 3 | B.1.400 | 0.000858 |
S | 583 | E583D | gaG | gaT | 1 | 3 | B.1.400 | 0.000429 |
S | 583 | E583D | gaG | gaT | 2 | 3 | B.1.436 | 0.002058 |
S | 583 | E583D | gaG | gaC | 1 | 3 | B.1.436 | 0.001029 |
S | 583 | E583D | gaG | gaT | 3 | 3 | B.1.516 | 0.005871 |
S | 583 | E583D | gaG | gaT | 3 | 3 | B.1.561 | 0.001191 |
S | 583 | E583D | gaG | gaC | 2 | 3 | B.1.565 | 0.001621 |
S | 583 | E583D | gaG | gaT | 1 | 3 | B.1.565 | 0.00081 |
S | 583 | E583E | gaG | gaA | 3 | 3 | B.1.568 | 0.003333 |
S | 583 | E583G | gAg | gGg | 3 | 3 | B.1.617.2 | 0.000011 |
S | 583 | E583D | gaG | gaC | 2 | 3 | B.1.628 | 0.000705 |
S | 583 | E583D | gaG | gaT | 1 | 3 | B.1.628 | 0.000352 |
S | 583 | E583Q | Gag | Cag | 3 | 3 | B.3.1 | 0.004975 |
S | 583 | E583Q | Gag | Cag | 3 | 3 | P.1.14 | 0.000143 |
S | 583 | E583E | gaG | gaA | 3 | 3 | P.2 | 0.00056 |
S | 583 | E583D | gaG | gaC | 3 | 3 | Q.3 | 0.000435 |
S | 583 | E583Q | Gag | Cag | 3 | 3 | Q.8 | 0.000495 |
S | 583 | E583E | gaG | gaA | 3 | 3 | R.1 | 0.00027 |
S | 583 | E583D | gaG | gaT | 2 | 2 | A | 0.000774 |
S | 583 | E583Y | GaG | TaT | 2 | 2 | All | 0 |
S | 583 | E583del1 | GAg | -Tg | 1 | 2 | All | 0 |
S | 583 | E583del2 | gAG | g-- | 1 | 2 | All | 0 |
S | 583 | E583del1 | gAg | g-g | 1 | 2 | All | 0 |
S | 583 | E583del2 | GAg | --g | 1 | 2 | All | 0 |
S | 583 | E583Q | Gag | Cag | 2 | 2 | AY.100 | 0.000092 |
S | 583 | E583A | gAg | gCg | 2 | 2 | AY.102 | 0.000053 |
S | 583 | E583D | gaG | gaT | 2 | 2 | AY.104 | 0.003968 |
S | 583 | E583D | gaG | gaT | 2 | 2 | AY.114 | 0.000462 |
S | 583 | E583D | gaG | gaT | 2 | 2 | AY.24 | 0.000862 |
S | 583 | E583G | gAg | gGg | 2 | 2 | AY.3 | 0.00002 |
S | 583 | E583E | gaG | gaA | 2 | 2 | AY.3.1 | 0.000171 |
S | 583 | E583Q | Gag | Cag | 2 | 2 | AY.34.1 | 0.00102 |
S | 583 | E583E | gaG | gaA | 2 | 2 | AY.39.1 | 0.000079 |
S | 583 | E583G | gAg | gGg | 2 | 2 | AY.4 | 0.000003 |
S | 583 | E583Q | Gag | Cag | 2 | 2 | AY.4.2 | 0.000043 |
S | 583 | E583D | gaG | gaT | 2 | 2 | AY.4.2.1 | 0.000298 |
S | 583 | E583D | gaG | gaT | 2 | 2 | AY.41 | 0.000588 |
S | 583 | E583K | Gag | Aag | 2 | 2 | AY.43 | 0.000009 |
S | 583 | E583G | gAg | gGg | 1 | 2 | AY.44 | 0.000006 |
S | 583 | E583G | gAG | gGA | 1 | 2 | AY.44 | 0.000006 |
S | 583 | E583Q | Gag | Cag | 2 | 2 | AY.45 | 0.000243 |
S | 583 | E583E | gaG | gaA | 2 | 2 | AY.46.6 | 0.000144 |
S | 583 | E583E | gaG | gaA | 2 | 2 | AY.5 | 0.000041 |
S | 583 | E583D | gaG | gaT | 1 | 2 | AY.5.3 | 0.000337 |
S | 583 | E583D | gaG | gaC | 1 | 2 | AY.5.3 | 0.000337 |
S | 583 | E583D | gaG | gaT | 1 | 2 | AY.55 | 0.000917 |
S | 583 | E583D | gaG | gaC | 1 | 2 | AY.55 | 0.000917 |
S | 583 | E583D | gaG | gaT | 2 | 2 | AY.57 | 0.001312 |
S | 583 | E583D | gaG | gaC | 2 | 2 | AY.61 | 0.00021 |
S | 583 | E583D | gaG | gaT | 2 | 2 | AY.7 | 0.000392 |
S | 583 | E583E | gaG | gaA | 2 | 2 | AY.75 | 0.000112 |
S | 583 | E583A | gAg | gCg | 2 | 2 | AY.9.2 | 0.000073 |
S | 583 | E583D | gaG | gaT | 2 | 2 | AY.94 | 0.000885 |
S | 583 | E583D | gaG | gaC | 1 | 2 | AY.99.1 | 0.001553 |
S | 583 | E583D | gaG | gaT | 1 | 2 | AY.99.1 | 0.001553 |
S | 583 | E583del2 | gAG | g-- | 1 | 2 | B.1 | 0.000009 |
S | 583 | E583del2 | GAg | --g | 1 | 2 | B.1 | 0.000009 |
S | 583 | E583X | Gag | Tag | 2 | 2 | B.1.1 | 0.000036 |
S | 583 | E583D | gaG | gaC | 1 | 2 | B.1.1.1 | 0.000327 |
S | 583 | E583D | gaG | gaT | 1 | 2 | B.1.1.1 | 0.000327 |
S | 583 | E583D | gaG | gaT | 2 | 2 | B.1.1.222 | 0.000408 |
S | 583 | E583D | gaG | gaT | 2 | 2 | B.1.1.244 | 0.030769 |
S | 583 | E583D | gaG | gaT | 2 | 2 | B.1.1.294 | 0.002532 |
S | 583 | E583D | gaG | gaT | 2 | 2 | B.1.1.318 | 0.000604 |
S | 583 | E583Q | Gag | Cag | 2 | 2 | B.1.1.348 | 0.001592 |
S | 583 | E583D | gaG | gaT | 2 | 2 | B.1.1.464 | 0.002946 |
S | 583 | E583Q | Gag | Cag | 2 | 2 | B.1.1.519 | 0.000079 |
S | 583 | E583G | gAg | gGg | 2 | 2 | B.1.1.7 | 0.000002 |
S | 583 | E583del | GAG | --- | 2 | 2 | B.1.1.7 | 0.000002 |
S | 583 | E583D | gaG | gaC | 1 | 2 | B.1.110.3 | 0.000718 |
S | 583 | E583D | gaG | gaT | 1 | 2 | B.1.110.3 | 0.000718 |
S | 583 | E583D | gaG | gaC | 1 | 2 | B.1.157 | 0.002985 |
S | 583 | E583D | gaG | gaT | 1 | 2 | B.1.157 | 0.002985 |
S | 583 | E583E | gaG | gaA | 2 | 2 | B.1.160 | 0.000062 |
S | 583 | E583A | gAg | gCg | 2 | 2 | B.1.160.8 | 0.002577 |
S | 583 | E583Q | Gag | Cag | 2 | 2 | B.1.177.21 | 0.000153 |
S | 583 | E583D | gaG | gaT | 2 | 2 | B.1.177.56 | 0.001335 |
S | 583 | E583D | gaG | gaT | 1 | 2 | B.1.177.57 | 0.000281 |
S | 583 | E583D | gaG | gaC | 1 | 2 | B.1.177.57 | 0.000281 |
S | 583 | E583D | gaG | gaT | 2 | 2 | B.1.177.6 | 0.001953 |
S | 583 | E583D | gaG | gaC | 1 | 2 | B.1.177.76 | 0.002494 |
S | 583 | E583D | gaG | gaT | 1 | 2 | B.1.177.76 | 0.002494 |
S | 583 | E583X | Gag | Tag | 2 | 2 | B.1.2 | 0.000018 |
S | 583 | E583K | Gag | Aag | 2 | 2 | B.1.2 | 0.000018 |
S | 583 | E583E | gaG | gaA | 2 | 2 | B.1.221.4 | 0.008333 |
S | 583 | E583D | gaG | gaC | 1 | 2 | B.1.236 | 0.002053 |
S | 583 | E583D | gaG | gaT | 1 | 2 | B.1.236 | 0.002053 |
S | 583 | E583D | gaG | gaT | 2 | 2 | B.1.351.3 | 0.001753 |
S | 583 | E583E | gaG | gaA | 2 | 2 | B.1.36.21 | 0.00432 |
S | 583 | E583D | gaG | gaC | 2 | 2 | B.1.466.2 | 0.000782 |
S | 583 | E583Q | Gag | Cag | 2 | 2 | B.1.617.1 | 0.000258 |
S | 583 | E583D | gaG | gaT | 2 | 2 | B.1.623 | 0.001073 |
S | 583 | E583D | gaG | gaT | 2 | 2 | C.36 | 0.001821 |
S | 583 | E583E | gaG | gaA | 2 | 2 | D.2 | 0.00015 |
S | 583 | E583D | gaG | gaT | 2 | 2 | P.1.7 | 0.000639 |
S | 583 | E583D | gaG | gaT | 2 | 2 | P.1.8 | 0.009569 |
S | 583 | E583D | gaG | gaC | 1 | 2 | P.2 | 0.000187 |
S | 583 | E583D | gaG | gaT | 1 | 2 | P.2 | 0.000187 |
S | 583 | E583E | gaG | gaA | 2 | 2 | Q.1 | 0.000253 |
S | 583 | E583D | gaG | gaT | 2 | 2 | Q.4 | 0.00091 |
S | 583 | E583X | Gag | Tag | 1 | 1 | A | 0.000387 |
S | 583 | E583Y | GaG | TaT | 1 | 1 | A | 0.000387 |
S | 583 | E583D | gaG | gaT | 1 | 1 | A.2 | 0.000662 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | A.2.5 | 0.000499 |
S | 583 | E583D | gaG | gaT | 1 | 1 | AD.2 | 0.000219 |
S | 583 | E583D | gaG | gaC | 1 | 1 | AE.1 | 0.011364 |
S | 583 | E583I | GAG | ATT | 1 | 1 | All | 0 |
S | 583 | E583D | gaG | gaC | 1 | 1 | AP.1 | 0.001502 |
S | 583 | E583E | gaG | gaA | 1 | 1 | AY.100 | 0.000046 |
S | 583 | E583D | gaG | gaT | 1 | 1 | AY.101 | 0.00049 |
S | 583 | E583E | gaG | gaA | 1 | 1 | AY.103 | 0.000006 |
S | 583 | E583G | gAg | gGg | 1 | 1 | AY.103 | 0.000006 |
S | 583 | E583D | gaG | gaT | 1 | 1 | AY.108 | 0.001103 |
S | 583 | E583D | gaG | gaC | 1 | 1 | AY.109 | 0.00074 |
S | 583 | E583K | Gag | Aag | 1 | 1 | AY.109 | 0.00074 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | AY.109 | 0.00074 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | AY.111 | 0.000183 |
S | 583 | E583D | gaG | gaT | 1 | 1 | AY.113 | 0.000142 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | AY.116.1 | 0.000311 |
S | 583 | E583del1 | gAg | g-g | 1 | 1 | AY.117 | 0.000085 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | AY.117 | 0.000085 |
S | 583 | E583E | gaG | gaA | 1 | 1 | AY.117 | 0.000085 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | AY.118 | 0.000063 |
S | 583 | E583V | gAg | gTg | 1 | 1 | AY.118 | 0.000063 |
S | 583 | E583E | gaG | gaA | 1 | 1 | AY.119 | 0.000035 |
S | 583 | E583D | gaG | gaC | 1 | 1 | AY.120.2 | 0.001285 |
S | 583 | E583E | gaG | gaA | 1 | 1 | AY.121 | 0.000135 |
S | 583 | E583D | gaG | gaT | 1 | 1 | AY.16 | 0.00038 |
S | 583 | E583D | gaG | gaC | 1 | 1 | AY.17 | 0.008197 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | AY.19 | 0.00114 |
S | 583 | E583E | gaG | gaA | 1 | 1 | AY.23 | 0.00007 |
S | 583 | E583K | Gag | Aag | 1 | 1 | AY.23.1 | 0.000417 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | AY.24 | 0.000431 |
S | 583 | E583V | gAg | gTg | 1 | 1 | AY.25 | 0.000006 |
S | 583 | E583K | Gag | Aag | 1 | 1 | AY.25 | 0.000006 |
S | 583 | E583G | gAg | gGg | 1 | 1 | AY.25 | 0.000006 |
S | 583 | E583K | Gag | Aag | 1 | 1 | AY.26 | 0.000028 |
S | 583 | E583E | gaG | gaA | 1 | 1 | AY.26 | 0.000028 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | AY.26 | 0.000028 |
S | 583 | E583A | gAg | gCg | 1 | 1 | AY.29 | 0.000016 |
S | 583 | E583E | gaG | gaA | 1 | 1 | AY.29 | 0.000016 |
S | 583 | E583D | gaG | gaT | 1 | 1 | AY.29.1 | 0.000221 |
S | 583 | E583D | gaG | gaC | 1 | 1 | AY.30 | 0.000396 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | AY.32 | 0.000532 |
S | 583 | E583D | gaG | gaT | 1 | 1 | AY.36 | 0.000148 |
S | 583 | E583del | GAG | --- | 1 | 1 | AY.38 | 0.000499 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | AY.39.1 | 0.00004 |
S | 583 | E583D | gaG | gaT | 1 | 1 | AY.39.2 | 0.001541 |
S | 583 | E583del | GAG | --- | 1 | 1 | AY.4 | 0.000002 |
S | 583 | E583X | Gag | Tag | 1 | 1 | AY.4 | 0.000002 |
S | 583 | E583del1 | GAg | -Tg | 1 | 1 | AY.4 | 0.000002 |
S | 583 | E583V | gAg | gTg | 1 | 1 | AY.4 | 0.000002 |
S | 583 | E583K | Gag | Aag | 1 | 1 | AY.4.2 | 0.000022 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | AY.4.5 | 0.000107 |
S | 583 | E583D | gaG | gaT | 1 | 1 | AY.40 | 0.000964 |
S | 583 | E583E | gaG | gaA | 1 | 1 | AY.41 | 0.000294 |
S | 583 | E583G | gAg | gGg | 1 | 1 | AY.43 | 0.000004 |
S | 583 | E583del | GAG | --- | 1 | 1 | AY.43 | 0.000004 |
S | 583 | E583D | gaG | gaT | 1 | 1 | AY.46.1 | 0.001027 |
S | 583 | E583E | gaG | gaA | 1 | 1 | AY.46.4 | 0.000165 |
S | 583 | E583A | gAg | gCg | 1 | 1 | AY.46.6 | 0.000072 |
S | 583 | E583G | gAg | gGg | 1 | 1 | AY.47 | 0.000031 |
S | 583 | E583E | gaG | gaA | 1 | 1 | AY.47 | 0.000031 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | AY.47 | 0.000031 |
S | 583 | E583D | gaG | gaC | 1 | 1 | AY.5.2 | 0.002463 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | AY.50 | 0.000799 |
S | 583 | E583X | Gag | Tag | 1 | 1 | AY.52 | 0.000814 |
S | 583 | E583K | Gag | Aag | 1 | 1 | AY.54 | 0.000095 |
S | 583 | E583E | gaG | gaA | 1 | 1 | AY.56 | 0.001605 |
S | 583 | E583D | gaG | gaC | 1 | 1 | AY.59 | 0.00053 |
S | 583 | E583D | gaG | gaT | 1 | 1 | AY.60 | 0.000938 |
S | 583 | E583D | gaG | gaT | 1 | 1 | AY.62 | 0.000436 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | AY.65 | 0.000533 |
S | 583 | E583D | gaG | gaT | 1 | 1 | AY.66 | 0.00107 |
S | 583 | E583del | GAG | --- | 1 | 1 | AY.66 | 0.00107 |
S | 583 | E583D | gaG | gaT | 1 | 1 | AY.70 | 0.000209 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | AY.74 | 0.000116 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | AY.75 | 0.000056 |
S | 583 | E583G | gAg | gGg | 1 | 1 | AY.75.1 | 0.00018 |
S | 583 | E583D | gaG | gaT | 1 | 1 | AY.79 | 0.001211 |
S | 583 | E583E | gaG | gaA | 1 | 1 | AY.84 | 0.000437 |
S | 583 | E583D | gaG | gaC | 1 | 1 | AY.84 | 0.000437 |
S | 583 | E583D | gaG | gaT | 1 | 1 | AY.88 | 0.000884 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | AY.88 | 0.000884 |
S | 583 | E583K | Gag | Aag | 1 | 1 | AY.89 | 0.004902 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | AY.9.2 | 0.000037 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | AY.90 | 0.000684 |
S | 583 | E583D | gaG | gaC | 1 | 1 | AY.90 | 0.000684 |
S | 583 | E583D | gaG | gaT | 1 | 1 | AY.91 | 0.00073 |
S | 583 | E583E | gaG | gaA | 1 | 1 | AY.92 | 0.000287 |
S | 583 | E583D | gaG | gaT | 1 | 1 | AY.92 | 0.000287 |
S | 583 | E583del | GAG | --- | 1 | 1 | AY.93 | 0.000273 |
S | 583 | E583E | gaG | gaA | 1 | 1 | AY.93 | 0.000273 |
S | 583 | E583D | gaG | gaT | 1 | 1 | AY.95 | 0.000761 |
S | 583 | E583E | gaG | gaA | 1 | 1 | AY.96 | 0.002075 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | AY.98 | 0.000079 |
S | 583 | E583D | gaG | gaT | 1 | 1 | AY.99 | 0.001049 |
S | 583 | E583K | Gag | Aag | 1 | 1 | B.1 | 0.000009 |
S | 583 | E583Y | GaG | TaT | 1 | 1 | B.1 | 0.000009 |
S | 583 | E583A | gAg | gCg | 1 | 1 | B.1.1 | 0.000018 |
S | 583 | E583G | gAg | gGg | 1 | 1 | B.1.1.1 | 0.000327 |
S | 583 | E583del | GAG | --- | 1 | 1 | B.1.1.139 | 0.022727 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.1.154 | 0.04 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.1.196 | 0.005714 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.1.205 | 0.003717 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.1.216 | 0.00089 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | B.1.1.28 | 0.000311 |
S | 583 | E583E | gaG | gaA | 1 | 1 | B.1.1.28 | 0.000311 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.1.289 | 0.002083 |
S | 583 | E583E | gaG | gaA | 1 | 1 | B.1.1.294 | 0.001266 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | B.1.1.302 | 0.002075 |
S | 583 | E583V | gAg | gTg | 1 | 1 | B.1.1.310 | 0.015152 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.1.311 | 0.000358 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.1.315 | 0.008475 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.1.316 | 0.000925 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | B.1.1.317 | 0.000412 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.1.339 | 0.010526 |
S | 583 | E583D | gaG | gaC | 1 | 1 | B.1.1.348 | 0.000796 |
S | 583 | E583D | gaG | gaC | 1 | 1 | B.1.1.355 | 0.015385 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.1.369 | 0.000446 |
S | 583 | E583D | gaG | gaC | 1 | 1 | B.1.1.376 | 0.005952 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.1.39 | 0.00051 |
S | 583 | E583A | gAg | gCg | 1 | 1 | B.1.1.39 | 0.00051 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.1.398 | 0.003226 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.1.412 | 0.007634 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.1.416 | 0.000905 |
S | 583 | E583E | gaG | gaA | 1 | 1 | B.1.1.45 | 0.014085 |
S | 583 | E583E | gaG | gaA | 1 | 1 | B.1.1.464 | 0.001473 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.1.50 | 0.000679 |
S | 583 | E583E | gaG | gaA | 1 | 1 | B.1.1.519 | 0.00004 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | B.1.1.526 | 0.003546 |
S | 583 | E583D | gaG | gaC | 1 | 1 | B.1.1.59 | 0.006494 |
S | 583 | E583V | gAg | gTg | 1 | 1 | B.1.1.7 | 0.000001 |
S | 583 | E583X | Gag | Tag | 1 | 1 | B.1.1.7 | 0.000001 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.1.8 | 0.003584 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.1.89 | 0.006061 |
S | 583 | E583D | gaG | gaC | 1 | 1 | B.1.12 | 0.008 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.13 | 0.002375 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.145 | 0.052632 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.146 | 0.004237 |
S | 583 | E583D | gaG | gaC | 1 | 1 | B.1.160.26 | 0.002421 |
S | 583 | E583D | gaG | gaC | 1 | 1 | B.1.160.27 | 0.015152 |
S | 583 | E583V | gAg | gTg | 1 | 1 | B.1.177 | 0.000013 |
S | 583 | E583K | Gag | Aag | 1 | 1 | B.1.177 | 0.000013 |
S | 583 | E583E | gaG | gaA | 1 | 1 | B.1.177 | 0.000013 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.177.11 | 0.001698 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.177.16 | 0.000664 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.177.45 | 0.000381 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | B.1.177.45 | 0.000381 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | B.1.177.61 | 0.043478 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.177.73 | 0.000566 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.177.77 | 0.000726 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.181 | 0.019608 |
S | 583 | E583G | gAg | gGg | 1 | 1 | B.1.2 | 0.000009 |
S | 583 | E583V | gAg | gTg | 1 | 1 | B.1.206 | 0.000816 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.210 | 0.002132 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.214.2 | 0.0006 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.221.1 | 0.002907 |
S | 583 | E583del | GAG | --- | 1 | 1 | B.1.234 | 0.000132 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.235 | 0.002519 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | B.1.236 | 0.002053 |
S | 583 | E583D | gaG | gaC | 1 | 1 | B.1.237 | 0.004975 |
S | 583 | E583D | gaG | gaC | 1 | 1 | B.1.240 | 0.000216 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.241 | 0.000812 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | B.1.258 | 0.000067 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | B.1.258.17 | 0.000104 |
S | 583 | E583A | gAg | gCg | 1 | 1 | B.1.258.24 | 0.010753 |
S | 583 | E583D | gaG | gaC | 1 | 1 | B.1.258.3 | 0.001675 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.279 | 0.000514 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.320 | 0.001245 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | B.1.351.2 | 0.000303 |
S | 583 | E583X | Gag | Tag | 1 | 1 | B.1.351.3 | 0.000876 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.356 | 0.001727 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.36.18 | 0.00042 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.36.26 | 0.002857 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | B.1.36.29 | 0.000517 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.36.29 | 0.000517 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.36.38 | 0.001642 |
S | 583 | E583K | Gag | Aag | 1 | 1 | B.1.36.8 | 0.001 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.361 | 0.001289 |
S | 583 | E583V | gAg | gTg | 1 | 1 | B.1.362 | 0.001541 |
S | 583 | E583E | gaG | gaA | 1 | 1 | B.1.377 | 0.004566 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.391 | 0.001127 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | B.1.396 | 0.000706 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.398 | 0.002976 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.40 | 0.019608 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.400.1 | 0.015152 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.402 | 0.009804 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.409 | 0.000781 |
S | 583 | E583D | gaG | gaC | 1 | 1 | B.1.416 | 0.001269 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.422 | 0.000812 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.425 | 0.002994 |
S | 583 | E583E | gaG | gaA | 1 | 1 | B.1.426 | 0.001009 |
S | 583 | E583D | gaG | gaC | 1 | 1 | B.1.427 | 0.00005 |
S | 583 | E583E | gaG | gaA | 1 | 1 | B.1.427 | 0.00005 |
S | 583 | E583E | gaG | gaA | 1 | 1 | B.1.436 | 0.001029 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.505 | 0.004386 |
S | 583 | E583E | gaG | gaA | 1 | 1 | B.1.509 | 0.000866 |
S | 583 | E583D | gaG | gaC | 1 | 1 | B.1.524 | 0.001406 |
S | 583 | E583E | gaG | gaA | 1 | 1 | B.1.525 | 0.000113 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | B.1.525 | 0.000113 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | B.1.526 | 0.000024 |
S | 583 | E583del | GAG | --- | 1 | 1 | B.1.526 | 0.000024 |
S | 583 | E583A | gAg | gCg | 1 | 1 | B.1.526 | 0.000024 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.556 | 0.007519 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.558 | 0.004566 |
S | 583 | E583K | Gag | Aag | 1 | 1 | B.1.561 | 0.000397 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | B.1.565 | 0.00081 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.576 | 0.000907 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.577 | 0.000687 |
S | 583 | E583D | gaG | gaC | 1 | 1 | B.1.582 | 0.000491 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.585 | 0.027778 |
S | 583 | E583E | gaG | gaA | 1 | 1 | B.1.590 | 0.004545 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.590 | 0.004545 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.597 | 0.00463 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | B.1.609 | 0.000479 |
S | 583 | E583I | GAG | ATT | 1 | 1 | B.1.609 | 0.000479 |
S | 583 | E583del | GAG | --- | 1 | 1 | B.1.617.2 | 0.000004 |
S | 583 | E583V | gAg | gTg | 1 | 1 | B.1.617.2 | 0.000004 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.617.3 | 0.002985 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.620 | 0.000946 |
S | 583 | E583del | GAG | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 583 | E583E | gaG | gaA | 1 | 1 | B.1.621 | 0.000089 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | B.1.621 | 0.000089 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.625 | 0.002353 |
S | 583 | E583E | gaG | gaA | 1 | 1 | B.1.628 | 0.000352 |
S | 583 | E583E | gaG | gaA | 1 | 1 | B.1.637 | 0.000073 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.1.91 | 0.002075 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.10 | 0.008264 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.40 | 0.000364 |
S | 583 | E583D | gaG | gaT | 1 | 1 | B.6 | 0.00091 |
S | 583 | E583A | gAg | gCg | 1 | 1 | C.35 | 0.000774 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | C.36 | 0.000911 |
S | 583 | E583D | gaG | gaC | 1 | 1 | C.39 | 0.018868 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | D.2 | 0.000075 |
S | 583 | E583X | Gag | Tag | 1 | 1 | D.2 | 0.000075 |
S | 583 | E583X | Gag | Tag | 1 | 1 | P.1.14 | 0.000048 |
S | 583 | E583G | gAg | gGg | 1 | 1 | P.1.4 | 0.000977 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | P.1.7 | 0.000319 |
S | 583 | E583Q | Gag | Cag | 1 | 1 | P.2 | 0.000187 |
S | 583 | E583D | gaG | gaT | 1 | 1 | P.6 | 0.003145 |
S | 583 | E583D | gaG | gaT | 1 | 1 | Q.7 | 0.001111 |
S | 583 | E583del | GAG | --- | 1 | 1 | Q.8 | 0.000165 |
S | 583 | E583D | gaG | gaC | 1 | 1 | W.3 | 0.005263 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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