CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 579

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S579P579PsynccAccG3582820.78770923297-23299
S579P579PsynccAccT358610.17039123297-23299
S579P579PsynccAccC358150.041899423297-23299
S579P579SnonsynCcaTca141141123297-23299
S579P579LnonsyncCacTa50490.9823297-23299
S579P579LnonsynCCaTTa5010.0223297-23299
S579P579QnonsyncCacAa1313123297-23299
S579P579RnonsyncCacGa1212123297-23299
S579P579deldelCCA---99123297-23299
S579P579del1delCca-ca640.66666723297-23299
S579P579del1delCCA-TC610.16666723297-23299
S579P579del1delccAcc-610.16666723297-23299
S579P579TnonsynCcaAca55123297-23299
S579P579AnonsynCcaGca44123297-23299
S579P579del2delCCa--a210.523297-23299
S579P579del2delcCAc--210.523297-23299

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S579P579PccAccG282358All0.000054
S579P579PccAccT61358All0.000012
S579P579PccAccC15358All0.000003
S579P579SCcaTca141141All0.000027
S579P579PccAccG137140B.1.1.70.000123
S579P579PccAccT3140B.1.1.70.000003
S579P579LcCacTa4950All0.000009
S579P579LCCaTTa150All0
S579P579PccAccG3838B.1.2670.703704
S579P579PccAccT2833B.1.1770.000369
S579P579PccAccG533B.1.1770.000066
S579P579SCcaTca3131B.1.1.70.000028
S579P579LcCacTa2324D.20.001726
S579P579LCCaTTa124D.20.000075
S579P579PccAccG1419AY.1030.000087
S579P579PccAccC419AY.1030.000025
S579P579PccAccT119AY.1030.000006
S579P579PccAccG1719AY.440.000103
S579P579PccAccT119AY.440.000006
S579P579PccAccC119AY.440.000006
S579P579PccAccG1416B.1.617.20.000053
S579P579PccAccC116B.1.617.20.000004
S579P579PccAccT116B.1.617.20.000004
S579P579PccAccG1015AY.30.000099
S579P579PccAccT515AY.30.00005
S579P579SCcaTca1515D.20.001126
S579P579QcCacAa1313All0.000002
S579P579RcCacGa1212All0.000002
S579P579PccAccG612AY.40.000009
S579P579PccAccT512AY.40.000008
S579P579PccAccC112AY.40.000002
S579P579SCcaTca1212AY.440.000073
S579P579SCcaTca1010AY.40.000016
S579P579delCCA---99All0.000002
S579P579SCcaTca99P.10.000142
S579P579SCcaTca88B.1.20.00007
S579P579SCcaTca77B.10.000064
S579P579del1Cca-ca46All0.000001
S579P579del1ccAcc-16All0
S579P579del1CCA-TC16All0
S579P579PccAccG66AY.430.000027
S579P579TCcaAca55All0.000001
S579P579QcCacAa55B.10.000046
S579P579RcCacGa55D.20.000375
S579P579ACcaGca44All0.000001
S579P579SCcaTca44B.1.10.000073
S579P579LcCacTa44B.1.1.70.000004
S579P579SCcaTca44P.1.140.000191
S579P579SCcaTca33AY.250.000018
S579P579SCcaTca33AY.30.00003
S579P579TCcaAca33B.10.000027
S579P579PccAccG33B.1.10.000054
S579P579LcCacTa33B.1.1770.00004
S579P579LcCacTa33B.1.20.000026
S579P579SCcaTca33B.1.617.20.000011
S579P579del2CCa--a12All0
S579P579del2cCAc--12All0
S579P579PccAccG22AY.1020.000053
S579P579SCcaTca22AY.1030.000012
S579P579PccAccT22AY.1130.000285
S579P579PccAccG22AY.1180.000125
S579P579PccAccG12AY.250.000006
S579P579PccAccT12AY.250.000006
S579P579SCcaTca22AY.260.000057
S579P579ACcaGca22AY.40.000003
S579P579PccAccT12AY.4.20.000022
S579P579PccAccG12AY.4.20.000022
S579P579PccAccG22AY.540.000191
S579P579LcCacTa22B0.000256
S579P579QcCacAa22B0.000256
S579P579LcCacTa22B.10.000018
S579P579PccAccT22B.1.1.2840.000215
S579P579delCCA---22B.1.1.70.000002
S579P579del1CCA-TC12B.1.20.000009
S579P579del1ccAcc-12B.1.20.000009
S579P579PccAccG12B.1.20.000009
S579P579PccAccT12B.1.20.000009
S579P579PccAccT12B.1.3510.00003
S579P579PccAccG12B.1.3510.00003
S579P579PccAccG22B.1.351.30.001753
S579P579PccAccT12B.1.5260.000024
S579P579PccAccG12B.1.5260.000024
S579P579SCcaTca22B.1.5950.000522
S579P579del1Cca-ca22B.1.617.20.000008
S579P579PccAccC22B.1.6200.001892
S579P579SCcaTca22B.1.6370.000146
S579P579LcCacTa11A.30.002096
S579P579PccAccT11AY.10.000396
S579P579PccAccG11AY.1000.000046
S579P579SCcaTca11AY.1020.000027
S579P579PccAccT11AY.1100.000113
S579P579PccAccT11AY.1170.000085
S579P579SCcaTca11AY.1180.000063
S579P579QcCacAa11AY.1180.000063
S579P579SCcaTca11AY.1190.000035
S579P579SCcaTca11AY.120.000316
S579P579LcCacTa11AY.120.10.000321
S579P579PccAccG11AY.140.000088
S579P579PccAccG11AY.16.10.00047
S579P579QcCacAa11AY.260.000028
S579P579PccAccT11AY.290.000016
S579P579PccAccT11AY.3.10.000085
S579P579SCcaTca11AY.300.000396
S579P579delCCA---11AY.380.000499
S579P579PccAccG11AY.390.000025
S579P579SCcaTca11AY.390.000025
S579P579RcCacGa11AY.40.000002
S579P579delCCA---11AY.40.000002
S579P579PccAccG11AY.400.000964
S579P579delCCA---11AY.430.000004
S579P579LcCacTa11AY.430.000004
S579P579SCcaTca11AY.450.000122
S579P579SCcaTca11AY.46.40.000165
S579P579PccAccG11AY.480.000465
S579P579SCcaTca11AY.50.000021
S579P579PccAccC11AY.510.000909
S579P579PccAccT11AY.550.000917
S579P579ACcaGca11AY.60.000041
S579P579SCcaTca11AY.60.000041
S579P579PccAccG11AY.610.000105
S579P579SCcaTca11AY.770.001127
S579P579SCcaTca11AY.90.000068
S579P579PccAccC11AY.9.20.000037
S579P579PccAccG11AY.98.10.000048
S579P579PccAccG11AY.99.20.000092
S579P579PccAccT11AZ.30.00152
S579P579SCcaTca11B0.000128
S579P579del2CCa--a11B0.000128
S579P579PccAccG11B.10.000009
S579P579RcCacGa11B.10.000009
S579P579del1Cca-ca11B.10.000009
S579P579delCCA---11B.1.1.1390.022727
S579P579LcCacTa11B.1.1.1480.008772
S579P579SCcaTca11B.1.1.2410.00207
S579P579PccAccC11B.1.1600.000031
S579P579LcCacTa11B.1.1600.000031
S579P579ACcaGca11B.1.1770.000013
S579P579RcCacGa11B.1.177.200.001517
S579P579TCcaAca11B.1.177.440.000519
S579P579PccAccG11B.1.177.530.002392
S579P579QcCacAa11B.1.177.870.000728
S579P579del2cCAc--11B.1.20.000009
S579P579delCCA---11B.1.20.000009
S579P579LcCacTa11B.1.2060.000816
S579P579SCcaTca11B.1.2100.002132
S579P579PccAccC11B.1.2320.000537
S579P579SCcaTca11B.1.2320.000537
S579P579RcCacGa11B.1.2340.000132
S579P579LcCacTa11B.1.2430.00007
S579P579PccAccG11B.1.2430.00007
S579P579QcCacAa11B.1.2580.000067
S579P579SCcaTca11B.1.258.170.000104
S579P579LcCacTa11B.1.3110.000275
S579P579RcCacGa11B.1.3110.000275
S579P579QcCacAa11B.1.3510.00003
S579P579PccAccC11B.1.4000.000429
S579P579PccAccG11B.1.4160.001269
S579P579PccAccC11B.1.4320.011236
S579P579LcCacTa11B.1.5160.001957
S579P579SCcaTca11B.1.5260.000024
S579P579del1Cca-ca11B.1.5900.004545
S579P579PccAccG11B.1.5950.000261
S579P579RcCacGa11B.1.5960.000087
S579P579LcCacTa11B.1.5960.000087
S579P579PccAccT11B.1.6090.000479
S579P579delCCA---11B.1.617.20.000004
S579P579RcCacGa11B.1.617.20.000004
S579P579SCcaTca11B.1.619.10.000641
S579P579delCCA---11B.1.6200.000946
S579P579PccAccG11B.1.6210.000089
S579P579PccAccG11B.1.6280.000352
S579P579TCcaAca11B.60.00091
S579P579SCcaTca11C.300.001727
S579P579LcCacTa11D.30.005917
S579P579SCcaTca11L.10.001905
S579P579PccAccG11P.10.000016
S579P579LcCacTa11P.10.000016
S579P579QcCacAa11P.1.10.000318
S579P579SCcaTca11P.1.100.000269
S579P579SCcaTca11P.1.150.000232
S579P579SCcaTca11P.1.160.000374
S579P579PccAccG11P.1.40.000977
S579P579PccAccG11Q.80.000165