CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 578

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S578D578DsyngaTgaC28862886123294-23296
S578D578YnonsynGatTat3333123294-23296
S578D578deldelGAT---1414123294-23296
S578D578GnonsyngATgGA1260.523294-23296
S578D578GnonsyngAtgGt1260.523294-23296
S578D578EnonsyngaTgaA22123294-23296
S578D578NnonsynGatAat11123294-23296
S578D578VnonsyngAtgTt11123294-23296
S578D578del2delgATg--11123294-23296
S578D578HnonsynGatCat11123294-23296

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S578D578DgaTgaC28862886All0.000552
S578D578DgaTgaC13131313B.1.1.70.001175
S578D578DgaTgaC561561AY.40.000873
S578D578DgaTgaC152152B.1.20.001338
S578D578DgaTgaC125125B.1.36.280.718391
S578D578DgaTgaC8282AY.250.000493
S578D578DgaTgaC5454B.1.617.20.000203
S578D578DgaTgaC5252A.150.825397
S578D578DgaTgaC4545AY.1030.000279
S578D578DgaTgaC4141AY.30.000408
S578D578DgaTgaC3838P.10.000599
S578D578YGatTat3333All0.000006
S578D578DgaTgaC2525B.1.1.2220.0051
S578D578DgaTgaC2121B.10.000192
S578D578DgaTgaC2020AY.1020.00053
S578D578DgaTgaC1919AY.440.000116
S578D578DgaTgaC1818AY.340.001745
S578D578DgaTgaC1616Q.80.002639
S578D578DgaTgaC1515A0.005805
S578D578delGAT---1414All0.000003
S578D578DgaTgaC1414B.1.1770.000184
S578D578DgaTgaC1414B.1.177.210.001071
S578D578GgATgGA612All0.000001
S578D578GgAtgGt612All0.000001
S578D578DgaTgaC1111B.1.1.4040.174603
S578D578DgaTgaC1111B.1.1600.000343
S578D578DgaTgaC1010AY.430.000044
S578D578DgaTgaC1010AY.9.20.000367
S578D578DgaTgaC1010B.1.6210.000885
S578D578DgaTgaC99B.1.10.000163
S578D578DgaTgaC99B.1.1.2650.028391
S578D578DgaTgaC99B.1.5260.000212
S578D578DgaTgaC77AY.1190.000247
S578D578DgaTgaC77AY.1200.00026
S578D578DgaTgaC77P.1.140.000335
S578D578DgaTgaC66AY.4.20.00013
S578D578DgaTgaC66AY.50.000124
S578D578DgaTgaC66B.1.1.3180.001811
S578D578DgaTgaC55AY.670.002321
S578D578YGatTat55B.10.000046
S578D578DgaTgaC55B.1.4290.000118
S578D578DgaTgaC55C.230.02907
S578D578YGatTat44B0.000511
S578D578DgaTgaC44B.1.3510.000119
S578D578DgaTgaC44C.370.000464
S578D578DgaTgaC33AY.1180.000188
S578D578DgaTgaC33AY.390.000074
S578D578DgaTgaC33AY.420.000121
S578D578GgAtgGt23B.10.000018
S578D578GgATgGA13B.10.000009
S578D578DgaTgaC33B.1.1.3060.001315
S578D578DgaTgaC33B.1.1.5190.000119
S578D578DgaTgaC33B.1.177.560.002003
S578D578GgATgGA33B.1.20.000026
S578D578DgaTgaC33B.1.2650.003812
S578D578DgaTgaC33B.1.360.000438
S578D578DgaTgaC33B.1.4270.000151
S578D578DgaTgaC33B.1.466.20.001174
S578D578DgaTgaC33B.1.5510.003871
S578D578DgaTgaC33B.1.5960.000261
S578D578delGAT---33B.1.617.20.000011
S578D578DgaTgaC33P.1.70.000958
S578D578EgaTgaA22All0
S578D578DgaTgaC22AY.10.000791
S578D578DgaTgaC22AY.1050.001286
S578D578DgaTgaC22AY.1110.000366
S578D578DgaTgaC22AY.1160.000574
S578D578DgaTgaC22AY.1170.000169
S578D578DgaTgaC22AY.200.000078
S578D578DgaTgaC22AY.230.000139
S578D578YGatTat22AY.250.000012
S578D578DgaTgaC22AY.270.000129
S578D578DgaTgaC22AY.3.10.000171
S578D578YGatTat22AY.40.000003
S578D578GgATgGA12AY.930.000273
S578D578GgAtgGt12AY.930.000273
S578D578delGAT---22B.10.000018
S578D578DgaTgaC22B.1.1.540.006042
S578D578delGAT---22B.1.1.70.000002
S578D578YGatTat22B.1.1.70.000002
S578D578YGatTat22B.1.20.000018
S578D578delGAT---22B.1.20.000018
S578D578DgaTgaC22B.1.2210.000142
S578D578DgaTgaC22B.1.2340.000264
S578D578DgaTgaC22B.1.5250.000226
S578D578DgaTgaC22B.1.6270.00404
S578D578DgaTgaC22B.1.6370.000146
S578D578YGatTat22D.20.00015
S578D578HGatCat11All0
S578D578del2gATg--11All0
S578D578VgAtgTt11All0
S578D578NGatAat11All0
S578D578YGatTat11AU.10.001266
S578D578GgAtgGt11AY.1000.000046
S578D578YGatTat11AY.1030.000006
S578D578VgAtgTt11AY.1030.000006
S578D578DgaTgaC11AY.1100.000113
S578D578DgaTgaC11AY.1140.000231
S578D578DgaTgaC11AY.120.000316
S578D578DgaTgaC11AY.20.000356
S578D578DgaTgaC11AY.260.000028
S578D578DgaTgaC11AY.29.10.000221
S578D578DgaTgaC11AY.360.000148
S578D578delGAT---11AY.380.000499
S578D578delGAT---11AY.40.000002
S578D578DgaTgaC11AY.4.2.10.000149
S578D578DgaTgaC11AY.4.50.000107
S578D578delGAT---11AY.430.000004
S578D578YGatTat11AY.430.000004
S578D578DgaTgaC11AY.450.000122
S578D578DgaTgaC11AY.46.40.000165
S578D578DgaTgaC11AY.470.000031
S578D578DgaTgaC11AY.5.40.000277
S578D578DgaTgaC11AY.570.000656
S578D578DgaTgaC11AY.590.00053
S578D578DgaTgaC11AY.60.000041
S578D578DgaTgaC11AY.610.000105
S578D578DgaTgaC11AY.70.000196
S578D578DgaTgaC11AY.740.000116
S578D578DgaTgaC11AY.790.001211
S578D578DgaTgaC11AY.900.000684
S578D578EgaTgaA11AY.930.000273
S578D578DgaTgaC11AY.98.10.000048
S578D578DgaTgaC11B0.000128
S578D578del2gATg--11B0.000128
S578D578NGatAat11B.10.000009
S578D578GgAtgGt11B.1.10.000018
S578D578YGatTat11B.1.10.000018
S578D578DgaTgaC11B.1.1.10.000327
S578D578delGAT---11B.1.1.1390.022727
S578D578DgaTgaC11B.1.1.1760.000439
S578D578DgaTgaC11B.1.1.2140.000055
S578D578YGatTat11B.1.1.2720.005208
S578D578YGatTat11B.1.1.3060.000438
S578D578DgaTgaC11B.1.1.3160.000925
S578D578DgaTgaC11B.1.1.330.000421
S578D578DgaTgaC11B.1.1.4090.002833
S578D578DgaTgaC11B.1.1.5180.006329
S578D578DgaTgaC11B.1.1.630.000386
S578D578HGatCat11B.1.1.70.000001
S578D578GgAtgGt11B.1.1600.000031
S578D578YGatTat11B.1.160.280.002924
S578D578DgaTgaC11B.1.177.480.003125
S578D578DgaTgaC11B.1.177.570.000281
S578D578DgaTgaC11B.1.177.600.000218
S578D578DgaTgaC11B.1.2120.016667
S578D578DgaTgaC11B.1.2580.000067
S578D578DgaTgaC11B.1.2940.032258
S578D578YGatTat11B.1.3010.005917
S578D578DgaTgaC11B.1.3110.000275
S578D578EgaTgaA11B.1.3440.008197
S578D578YGatTat11B.1.351.50.0006
S578D578DgaTgaC11B.1.3560.001727
S578D578YGatTat11B.1.3690.000285
S578D578DgaTgaC11B.1.3960.000706
S578D578DgaTgaC11B.1.4040.001302
S578D578DgaTgaC11B.1.4590.004082
S578D578DgaTgaC11B.1.4700.001404
S578D578DgaTgaC11B.1.5770.000687
S578D578YGatTat11B.1.5950.000261
S578D578YGatTat11B.1.617.10.000129
S578D578DgaTgaC11B.1.6180.004032
S578D578delGAT---11B.1.6200.000946
S578D578YGatTat11B.1.6230.000536
S578D578GgATgGA11B.1.6370.000073
S578D578DgaTgaC11B.1.930.000934
S578D578DgaTgaC11B.350.007812
S578D578YGatTat11B.6.60.000889
S578D578DgaTgaC11N.60.007092
S578D578DgaTgaC11P.1.120.000484
S578D578DgaTgaC11P.1.150.000232
S578D578DgaTgaC11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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