CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 575

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S575A575AsyngcTgcC808379350.9816923285-23287
S575A575AsyngcTgcA80831150.014227423285-23287
S575A575AsyngcTgcG8083330.0040826423285-23287
S575A575SnonsynGctTct165116450.99636623285-23287
S575A575SnonsynGcTTcC165140.0024227723285-23287
S575A575SnonsynGCtAGt165120.0012113923285-23287
S575A575VnonsyngCtgTt3131123285-23287
S575A575GnonsyngCtgGt2626123285-23287
S575A575TnonsynGctAct22210.95454523285-23287
S575A575TnonsynGcTAcC2210.045454523285-23287
S575A575deldelGCT---1313123285-23287
S575A575del1delGct-ct830.37523285-23287
S575A575del1delgcTgc-830.37523285-23287
S575A575del1delgCtg-t820.2523285-23287
S575A575DnonsyngCtgAt55123285-23287
S575A575PnonsynGctCct44123285-23287
S575A575YnonsynGCtTAt11123285-23287

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S575A575AgcTgcC79358083All0.001518
S575A575AgcTgcA1158083All0.000022
S575A575AgcTgcG338083All0.000006
S575A575AgcTgcC32823282B.1.1.3180.990344
S575A575SGctTct16451651All0.000315
S575A575SGcTTcC41651All0.000001
S575A575SGCtAGt21651All0
S575A575AgcTgcC12051205AZ.20.989327
S575A575AgcTgcC11391139AZ.10.987858
S575A575AgcTgcC655655AZ.30.995441
S575A575SGctTct612612B.1.1.70.000548
S575A575AgcTgcC294298AY.430.001303
S575A575AgcTgcA3298AY.430.000013
S575A575AgcTgcG1298AY.430.000004
S575A575AgcTgcC298298AZ.41
S575A575AgcTgcC284284AZ.50.996491
S575A575SGctTct177177B.1.20.001559
S575A575AgcTgcC123123AZ.2.11
S575A575AgcTgcC119119AZ.61
S575A575AgcTgcC4886B.1.1.70.000043
S575A575AgcTgcA3486B.1.1.70.00003
S575A575AgcTgcG486B.1.1.70.000004
S575A575AgcTgcC6868B.1.2210.00483
S575A575SGctTct6767AY.40.000104
S575A575SGctTct5858B.1.2400.012503
S575A575SGctTct5454B.1.10.00098
S575A575AgcTgcC5353B.1.10.000961
S575A575SGctTct5151B.10.000467
S575A575AgcTgcC4148B.1.617.20.000154
S575A575AgcTgcA648B.1.617.20.000023
S575A575AgcTgcG148B.1.617.20.000004
S575A575AgcTgcA3439B.1.1770.000448
S575A575AgcTgcC439B.1.1770.000053
S575A575AgcTgcG139B.1.1770.000013
S575A575SGctTct3939B.1.617.20.000147
S575A575SGctTct3232AY.1200.00119
S575A575VgCtgTt3131All0.000006
S575A575SGctTct3030B.1.360.004377
S575A575AgcTgcC1929P.10.000299
S575A575AgcTgcG529P.10.000079
S575A575AgcTgcA529P.10.000079
S575A575AgcTgcC2828A.10.007892
S575A575SGctTct2727C.370.003134
S575A575GgCtgGt2626All0.000005
S575A575SGctTct2626B.1.1.500.017651
S575A575SGctTct2525B.1.160.280.073099
S575A575AgcTgcC2323AY.390.000568
S575A575TGctAct2122All0.000004
S575A575TGcTAcC122All0
S575A575AgcTgcC1422AY.40.000022
S575A575AgcTgcA822AY.40.000012
S575A575SGctTct2222B.1.1600.000686
S575A575SGctTct2121B.1.1.2220.004284
S575A575AgcTgcC1720AY.1020.000451
S575A575AgcTgcA320AY.1020.00008
S575A575SGctTct1818AY.1190.000636
S575A575AgcTgcC1818AY.4.50.001935
S575A575SGctTct1515AY.1020.000398
S575A575SGctTct1515AY.1170.001268
S575A575AgcTgcC1015AY.440.000061
S575A575AgcTgcA515AY.440.00003
S575A575SGctTct1414B.1.177.570.003934
S575A575SGctTct1414B.1.4290.000329
S575A575delGCT---1313All0.000002
S575A575SGctTct1313AY.330.000868
S575A575SGctTct1313AY.440.000079
S575A575AgcTgcC1313AY.46.40.002139
S575A575SGctTct1212AY.430.000053
S575A575SGctTct1212B.1.3510.000357
S575A575AgcTgcC1111AY.990.011542
S575A575AgcTgcC1111B.10.000101
S575A575SGctTct1111B.1.2210.000781
S575A575SGctTct1111B.1.2980.023256
S575A575AgcTgcC810AY.1030.00005
S575A575AgcTgcA210AY.1030.000012
S575A575AgcTgcC910AY.230.000628
S575A575AgcTgcA110AY.230.00007
S575A575SGctTct1010AY.30.000099
S575A575SGctTct1010AY.340.00097
S575A575AgcTgcC1010AY.50.000206
S575A575AgcTgcG1010B.1.1.1390.227273
S575A575SGctTct1010B.1.1.5190.000397
S575A575AgcTgcC910B.1.617.10.001161
S575A575AgcTgcA110B.1.617.10.000129
S575A575SGctTct99AY.250.000054
S575A575SGctTct99AY.50.000186
S575A575SGctTct99B.1.1.2840.000967
S575A575AgcTgcC89B.1.20.00007
S575A575AgcTgcA19B.1.20.000009
S575A575SGctTct89D.20.0006
S575A575SGCtAGt19D.20.000075
S575A575del1Gct-ct38All0.000001
S575A575del1gcTgc-38All0.000001
S575A575del1gCtg-t28All0
S575A575VgCtgTt88B.10.000073
S575A575SGctTct88P.20.001493
S575A575AgcTgcC77AT.10.035897
S575A575SGctTct77B.1.36.10.007982
S575A575SGctTct77B.1.5950.001827
S575A575SGctTct66AY.1000.000276
S575A575GgCtgGt66AY.480.002791
S575A575SGctTct66B.1.1770.000079
S575A575SGctTct66R.10.00054
S575A575DgCtgAt55All0.000001
S575A575SGctTct55AY.1030.000031
S575A575AgcTgcC55AY.250.00003
S575A575SGctTct55AY.4.20.000108
S575A575AgcTgcC55B.1.1.280.001556
S575A575AgcTgcC55B.1.1.4090.014164
S575A575AgcTgcG55B.1.2910.096154
S575A575SGctTct55B.1.4270.000252
S575A575SGctTct55B.1.5260.000118
S575A575SGctTct55B.4.70.050505
S575A575VgCtgTt55D.20.000375
S575A575PGctCct44All0.000001
S575A575VgCtgTt44AY.40.000006
S575A575GgCtgGt44AY.40.000006
S575A575AgcTgcA34AY.4.20.000065
S575A575AgcTgcC14AY.4.20.000022
S575A575TGctAct44AY.60.000165
S575A575AgcTgcC44AY.720.005442
S575A575del1Gct-ct34B.10.000027
S575A575del1gCtg-t14B.10.000009
S575A575SGctTct44B.1.1.280.001245
S575A575SGcTTcC44B.1.1.3180.001207
S575A575AgcTgcC44B.1.1.4110.058824
S575A575AgcTgcC44B.1.1.4480.00813
S575A575AgcTgcC44B.1.110.30.002874
S575A575AgcTgcC44B.1.2340.000528
S575A575SGctTct44B.1.617.10.000516
S575A575GgCtgGt44B.1.617.20.000015
S575A575SGctTct44P.10.000063
S575A575SGctTct33A0.001161
S575A575AgcTgcC33A0.001161
S575A575AgcTgcC33AY.1140.000693
S575A575AgcTgcC23AY.200.000078
S575A575AgcTgcG13AY.200.000039
S575A575GgCtgGt33AY.250.000018
S575A575AgcTgcC33AY.30.00003
S575A575AgcTgcC33AY.300.001187
S575A575SGctTct33AY.350.000699
S575A575SGctTct33AY.420.000121
S575A575SGctTct33AY.610.000314
S575A575DgCtgAt33B.10.000027
S575A575SGctTct33B.1.2580.0002
S575A575AgcTgcC23B.1.3510.000059
S575A575AgcTgcG13B.1.3510.00003
S575A575AgcTgcC33B.1.5250.000339
S575A575AgcTgcC33B.1.5760.00272
S575A575AgcTgcC33B.1.5960.000261
S575A575delGCT---33B.1.617.20.000011
S575A575SGctTct33B.1.6190.002613
S575A575AgcTgcC33B.1.6210.000266
S575A575SGctTct33P.1.140.000143
S575A575AgcTgcC12A.2.50.000499
S575A575AgcTgcA12A.2.50.000499
S575A575SGctTct22AY.230.000139
S575A575SGctTct22AY.29.10.000441
S575A575SGctTct22AY.3.10.000171
S575A575AgcTgcC12AY.340.000097
S575A575AgcTgcA12AY.340.000097
S575A575SGctTct22AY.390.000049
S575A575AgcTgcC22AY.39.10.000079
S575A575TGctAct22AY.40.000003
S575A575SGctTct22AY.4.30.001684
S575A575TGctAct12AY.430.000004
S575A575TGcTAcC12AY.430.000004
S575A575SGctTct22AY.46.40.000329
S575A575AgcTgcC22AY.46.60.000144
S575A575AgcTgcC22AY.470.000062
S575A575SGctTct22AY.740.000231
S575A575SGctTct22AY.750.000112
S575A575AgcTgcC12B0.000128
S575A575AgcTgcG12B0.000128
S575A575delGCT---22B.10.000018
S575A575TGctAct22B.10.000018
S575A575SGctTct22B.1.1.100.00223
S575A575SGctTct22B.1.1.1920.004619
S575A575AgcTgcC22B.1.1.4840.2
S575A575delGCT---22B.1.1.70.000002
S575A575SGctTct22B.1.177.210.000153
S575A575SGctTct22B.1.2340.000264
S575A575SGctTct22B.1.36.80.002
S575A575AgcTgcA22B.1.3960.001411
S575A575SGctTct22B.1.4560.006536
S575A575SGctTct22B.1.466.20.000782
S575A575SGctTct22B.1.5250.000226
S575A575AgcTgcG12B.1.5260.000024
S575A575AgcTgcA12B.1.5260.000024
S575A575AgcTgcA22B.1.5610.000794
S575A575AgcTgcC22B.1.5750.000607
S575A575VgCtgTt22B.1.5820.000981
S575A575SGctTct22B.1.5960.000174
S575A575SGctTct22B.1.6210.000177
S575A575AgcTgcG22B.230.005848
S575A575TGctAct22D.20.00015
S575A575GgCtgGt22D.20.00015
S575A575AgcTgcC22N.50.003534
S575A575SGctTct11A.10.000282
S575A575SGctTct11A.190.009434
S575A575PGctCct11A.20.000662
S575A575YGCtTAt11All0
S575A575GgCtgGt11AY.1000.000046
S575A575TGctAct11AY.1030.000006
S575A575SGctTct11AY.1080.001103
S575A575AgcTgcC11AY.1100.000113
S575A575SGctTct11AY.1180.000063
S575A575AgcTgcC11AY.1190.000035
S575A575SGctTct11AY.1210.000135
S575A575AgcTgcA11AY.130.000161
S575A575AgcTgcC11AY.140.000088
S575A575AgcTgcC11AY.260.000028
S575A575AgcTgcC11AY.270.000065
S575A575AgcTgcC11AY.290.000016
S575A575SGctTct11AY.290.000016
S575A575VgCtgTt11AY.320.000532
S575A575AgcTgcC11AY.360.000148
S575A575delGCT---11AY.380.000499
S575A575delGCT---11AY.40.000002
S575A575TGctAct11AY.4.20.000022
S575A575SGctTct11AY.4.50.000107
S575A575AgcTgcC11AY.420.00004
S575A575delGCT---11AY.430.000004
S575A575VgCtgTt11AY.430.000004
S575A575del1gcTgc-11AY.430.000004
S575A575VgCtgTt11AY.440.000006
S575A575TGctAct11AY.440.000006
S575A575SGctTct11AY.470.000031
S575A575VgCtgTt11AY.470.000031
S575A575SGctTct11AY.5.20.002463
S575A575SGctTct11AY.5.30.000337
S575A575SGctTct11AY.530.000288
S575A575AgcTgcC11AY.590.00053
S575A575VgCtgTt11AY.590.00053
S575A575SGctTct11AY.60.000041
S575A575AgcTgcC11AY.670.000464
S575A575SGctTct11AY.7.20.000559
S575A575AgcTgcC11AY.710.000475
S575A575AgcTgcC11AY.750.000056
S575A575AgcTgcC11AY.75.10.00018
S575A575SGctTct11AY.780.001541
S575A575SGctTct11AY.810.001992
S575A575SGctTct11AY.9.20.000037
S575A575AgcTgcC11AY.9.20.000037
S575A575SGctTct11AY.900.000684
S575A575SGctTct11AY.920.000287
S575A575SGctTct11AY.930.000273
S575A575SGctTct11AY.980.000079
S575A575SGctTct11AY.99.20.000092
S575A575del1gCtg-t11B0.000128
S575A575SGctTct11B0.000128
S575A575GgCtgGt11B.10.000009
S575A575PGctCct11B.1.10.000018
S575A575SGctTct11B.1.1.1410.002012
S575A575AgcTgcC11B.1.1.1420.017544
S575A575SGctTct11B.1.1.1760.000439
S575A575SGctTct11B.1.1.2080.012195
S575A575SGctTct11B.1.1.2140.000055
S575A575AgcTgcC11B.1.1.2220.000204
S575A575SGctTct11B.1.1.2660.012195
S575A575VgCtgTt11B.1.1.2860.002899
S575A575AgcTgcC11B.1.1.3070.002532
S575A575SGctTct11B.1.1.3110.000358
S575A575SGctTct11B.1.1.330.000421
S575A575SGctTct11B.1.1.340.013158
S575A575SGctTct11B.1.1.370.000193
S575A575VgCtgTt11B.1.1.390.00051
S575A575SGctTct11B.1.1.3980.003226
S575A575SGctTct11B.1.1.4280.009434
S575A575SGctTct11B.1.1.4340.000349
S575A575SGctTct11B.1.1.520.012195
S575A575SGctTct11B.1.1.5280.004808
S575A575TGctAct11B.1.1.70.000001
S575A575PGctCct11B.1.1.70.000001
S575A575GgCtgGt11B.1.1.70.000001
S575A575del1gcTgc-11B.1.1.700.000341
S575A575DgCtgAt11B.1.1100.004525
S575A575SGctTct11B.1.1280.000635
S575A575AgcTgcA11B.1.1600.000031
S575A575delGCT---11B.1.1600.000031
S575A575AgcTgcC11B.1.177.160.000664
S575A575TGctAct11B.1.177.190.001431
S575A575SGctTct11B.1.177.350.000691
S575A575AgcTgcC11B.1.177.570.000281
S575A575AgcTgcC11B.1.177.70.000165
S575A575TGctAct11B.1.177.70.000165
S575A575VgCtgTt11B.1.177.730.000566
S575A575VgCtgTt11B.1.177.820.000477
S575A575TGctAct11B.1.177.860.000183
S575A575delGCT---11B.1.20.000009
S575A575GgCtgGt11B.1.20.000009
S575A575VgCtgTt11B.1.20.000009
S575A575AgcTgcC11B.1.2180.005155
S575A575GgCtgGt11B.1.2210.000071
S575A575SGctTct11B.1.2230.002778
S575A575SGctTct11B.1.2240.025
S575A575VgCtgTt11B.1.2320.000537
S575A575TGctAct11B.1.2430.00007
S575A575GgCtgGt11B.1.2430.00007
S575A575SGCtAGt11B.1.2430.00007
S575A575SGctTct11B.1.30.002618
S575A575VgCtgTt11B.1.3110.000275
S575A575SGctTct11B.1.3240.001605
S575A575GgCtgGt11B.1.351.20.000303
S575A575SGctTct11B.1.351.20.000303
S575A575SGctTct11B.1.36.100.004785
S575A575SGctTct11B.1.3610.001289
S575A575SGctTct11B.1.3630.012987
S575A575AgcTgcC11B.1.3690.000285
S575A575SGctTct11B.1.4090.000781
S575A575AgcTgcC11B.1.4290.000024
S575A575SGctTct11B.1.4590.004082
S575A575AgcTgcC11B.1.4700.001404
S575A575TGctAct11B.1.5260.000024
S575A575delGCT---11B.1.6200.000946
S575A575AgcTgcC11B.1.6200.000946
S575A575SGctTct11B.1.6270.00202
S575A575SGctTct11B.4.10.018868
S575A575SGctTct11B.400.000364
S575A575AgcTgcC11B.580.010204
S575A575SGctTct11B.6.60.000889
S575A575DgCtgAt11D.20.000075
S575A575YGCtTAt11D.20.000075
S575A575del1gcTgc-11D.20.000075
S575A575AgcTgcC11D.20.000075
S575A575SGctTct11K.20.04
S575A575PGctCct11P.10.000016
S575A575SGctTct11P.1.160.000374
S575A575TGctAct11P.1.20.001156
S575A575AgcTgcC11P.1.70.000319
S575A575SGctTct11Q.10.000126
S575A575SGctTct11Q.30.000145
S575A575SGctTct11Q.80.000165