CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 572 | T572I | nonsyn | aCt | aTt | 19058 | 19058 | 1 | 23276-23278 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 572 | T572I | aCt | aTt | 19058 | 19058 | All | 0.003645 |
S | 572 | T572I | aCt | aTt | 6081 | 6081 | B.1.1.7 | 0.005444 |
S | 572 | T572I | aCt | aTt | 1959 | 1959 | AY.44 | 0.011924 |
S | 572 | T572I | aCt | aTt | 1479 | 1479 | AY.32 | 0.78754 |
S | 572 | T572I | aCt | aTt | 1363 | 1363 | AY.4 | 0.002121 |
S | 572 | T572I | aCt | aTt | 1024 | 1024 | AY.95 | 0.7793 |
S | 572 | T572I | aCt | aTt | 800 | 800 | AY.43 | 0.003544 |
S | 572 | T572I | aCt | aTt | 627 | 627 | B.1.1.486 | 0.988959 |
S | 572 | T572I | aCt | aTt | 523 | 523 | AY.25 | 0.003146 |
S | 572 | T572I | aCt | aTt | 501 | 501 | B.1.617.2 | 0.001886 |
S | 572 | T572I | aCt | aTt | 320 | 320 | AY.104 | 0.634921 |
S | 572 | T572I | aCt | aTt | 320 | 320 | AY.39 | 0.007908 |
S | 572 | T572I | aCt | aTt | 273 | 273 | B.1.2 | 0.002404 |
S | 572 | T572I | aCt | aTt | 257 | 257 | B.1.621 | 0.022749 |
S | 572 | T572I | aCt | aTt | 249 | 249 | AY.103 | 0.001546 |
S | 572 | T572I | aCt | aTt | 175 | 175 | B.1 | 0.001603 |
S | 572 | T572I | aCt | aTt | 147 | 147 | C.37.1 | 0.384817 |
S | 572 | T572I | aCt | aTt | 142 | 142 | P.1 | 0.002237 |
S | 572 | T572I | aCt | aTt | 120 | 120 | C.37 | 0.013928 |
S | 572 | T572I | aCt | aTt | 116 | 116 | P.1.14 | 0.005545 |
S | 572 | T572I | aCt | aTt | 115 | 115 | B.1.177 | 0.001514 |
S | 572 | T572I | aCt | aTt | 111 | 111 | AY.4.2 | 0.002407 |
S | 572 | T572I | aCt | aTt | 89 | 89 | B.1.429 | 0.002094 |
S | 572 | T572I | aCt | aTt | 81 | 81 | B.1.177.88 | 1 |
S | 572 | T572I | aCt | aTt | 71 | 71 | AY.3 | 0.000706 |
S | 572 | T572I | aCt | aTt | 64 | 64 | AY.46.6 | 0.004621 |
S | 572 | T572I | aCt | aTt | 61 | 61 | B.1.177.7 | 0.010056 |
S | 572 | T572I | aCt | aTt | 60 | 60 | B.1.526 | 0.00141 |
S | 572 | T572I | aCt | aTt | 59 | 59 | B.1.1 | 0.00107 |
S | 572 | T572I | aCt | aTt | 50 | 50 | B.1.617.1 | 0.006448 |
S | 572 | T572I | aCt | aTt | 44 | 44 | AY.116.1 | 0.013703 |
S | 572 | T572I | aCt | aTt | 44 | 44 | AY.39.1 | 0.001743 |
S | 572 | T572I | aCt | aTt | 42 | 42 | B.1.160 | 0.00131 |
S | 572 | T572I | aCt | aTt | 42 | 42 | B.1.351 | 0.001249 |
S | 572 | T572I | aCt | aTt | 40 | 40 | AY.102 | 0.001061 |
S | 572 | T572I | aCt | aTt | 40 | 40 | AY.29 | 0.000631 |
S | 572 | T572I | aCt | aTt | 40 | 40 | AY.42 | 0.001609 |
S | 572 | T572I | aCt | aTt | 38 | 38 | AY.26 | 0.001076 |
S | 572 | T572I | aCt | aTt | 35 | 35 | AY.23 | 0.002441 |
S | 572 | T572I | aCt | aTt | 34 | 34 | AY.119 | 0.0012 |
S | 572 | T572I | aCt | aTt | 34 | 34 | AY.16 | 0.012908 |
S | 572 | T572I | aCt | aTt | 31 | 31 | B.1.1.39 | 0.0158 |
S | 572 | T572I | aCt | aTt | 31 | 31 | B.1.397 | 0.150485 |
S | 572 | T572I | aCt | aTt | 30 | 30 | AY.99.2 | 0.002765 |
S | 572 | T572I | aCt | aTt | 29 | 29 | B.1.284 | 0.381579 |
S | 572 | T572I | aCt | aTt | 28 | 28 | AY.5 | 0.000578 |
S | 572 | T572I | aCt | aTt | 25 | 25 | AY.75 | 0.001401 |
S | 572 | T572I | aCt | aTt | 24 | 24 | AY.121 | 0.003248 |
S | 572 | T572I | aCt | aTt | 24 | 24 | B.1.1.519 | 0.000953 |
S | 572 | T572I | aCt | aTt | 24 | 24 | Q.1 | 0.003032 |
S | 572 | T572I | aCt | aTt | 23 | 23 | B.1.258.17 | 0.002391 |
S | 572 | T572I | aCt | aTt | 23 | 23 | B.1.36.8 | 0.023 |
S | 572 | T572I | aCt | aTt | 21 | 21 | AY.100 | 0.000966 |
S | 572 | T572I | aCt | aTt | 21 | 21 | AY.46 | 0.002186 |
S | 572 | T572I | aCt | aTt | 21 | 21 | B.1.637 | 0.001535 |
S | 572 | T572I | aCt | aTt | 20 | 20 | AY.91 | 0.014609 |
S | 572 | T572I | aCt | aTt | 20 | 20 | B.1.177.10 | 0.017559 |
S | 572 | T572I | aCt | aTt | 20 | 20 | B.1.399 | 0.038685 |
S | 572 | T572I | aCt | aTt | 19 | 19 | B.1.36.39 | 0.042129 |
S | 572 | T572I | aCt | aTt | 18 | 18 | AY.4.5 | 0.001935 |
S | 572 | T572I | aCt | aTt | 18 | 18 | B.1.398 | 0.053571 |
S | 572 | T572I | aCt | aTt | 18 | 18 | B.1.576 | 0.016319 |
S | 572 | T572I | aCt | aTt | 16 | 16 | AY.47 | 0.000498 |
S | 572 | T572I | aCt | aTt | 16 | 16 | AY.54 | 0.001526 |
S | 572 | T572I | aCt | aTt | 16 | 16 | AY.55 | 0.014679 |
S | 572 | T572I | aCt | aTt | 15 | 15 | AY.20 | 0.000583 |
S | 572 | T572I | aCt | aTt | 15 | 15 | AY.33 | 0.001002 |
S | 572 | T572I | aCt | aTt | 15 | 15 | B.1.427 | 0.000757 |
S | 572 | T572I | aCt | aTt | 15 | 15 | B.1.596.1 | 0.140187 |
S | 572 | T572I | aCt | aTt | 14 | 14 | AY.45 | 0.001704 |
S | 572 | T572I | aCt | aTt | 14 | 14 | B.1.595 | 0.003653 |
S | 572 | T572I | aCt | aTt | 13 | 13 | AY.117 | 0.001099 |
S | 572 | T572I | aCt | aTt | 13 | 13 | AY.27 | 0.000841 |
S | 572 | T572I | aCt | aTt | 13 | 13 | B.1.177.81 | 0.002461 |
S | 572 | T572I | aCt | aTt | 13 | 13 | B.1.596 | 0.001133 |
S | 572 | T572I | aCt | aTt | 12 | 12 | AY.36 | 0.001779 |
S | 572 | T572I | aCt | aTt | 12 | 12 | AY.98 | 0.000948 |
S | 572 | T572I | aCt | aTt | 12 | 12 | B.1.1.37 | 0.002314 |
S | 572 | T572I | aCt | aTt | 12 | 12 | B.1.36.18 | 0.005042 |
S | 572 | T572I | aCt | aTt | 11 | 11 | AY.113 | 0.001566 |
S | 572 | T572I | aCt | aTt | 11 | 11 | AY.98.1 | 0.000533 |
S | 572 | T572I | aCt | aTt | 11 | 11 | C.16 | 0.011665 |
S | 572 | T572I | aCt | aTt | 10 | 10 | AY.70 | 0.002085 |
S | 572 | T572I | aCt | aTt | 10 | 10 | B.1.1.317 | 0.004117 |
S | 572 | T572I | aCt | aTt | 10 | 10 | B.1.36 | 0.001459 |
S | 572 | T572I | aCt | aTt | 9 | 9 | Q.8 | 0.001484 |
S | 572 | T572I | aCt | aTt | 8 | 8 | AY.61 | 0.000838 |
S | 572 | T572I | aCt | aTt | 8 | 8 | AY.7.1 | 0.000902 |
S | 572 | T572I | aCt | aTt | 8 | 8 | AY.74 | 0.000925 |
S | 572 | T572I | aCt | aTt | 8 | 8 | AY.89 | 0.039216 |
S | 572 | T572I | aCt | aTt | 8 | 8 | B | 0.001022 |
S | 572 | T572I | aCt | aTt | 8 | 8 | B.1.1.333 | 0.008611 |
S | 572 | T572I | aCt | aTt | 8 | 8 | B.1.234 | 0.001056 |
S | 572 | T572I | aCt | aTt | 8 | 8 | B.1.525 | 0.000905 |
S | 572 | T572I | aCt | aTt | 8 | 8 | Q.3 | 0.00116 |
S | 572 | T572I | aCt | aTt | 7 | 7 | AY.118 | 0.000439 |
S | 572 | T572I | aCt | aTt | 7 | 7 | AY.14 | 0.000616 |
S | 572 | T572I | aCt | aTt | 7 | 7 | AY.3.1 | 0.000597 |
S | 572 | T572I | aCt | aTt | 7 | 7 | AY.46.3 | 0.006536 |
S | 572 | T572I | aCt | aTt | 7 | 7 | AY.72 | 0.009524 |
S | 572 | T572I | aCt | aTt | 7 | 7 | B.1.1.284 | 0.000752 |
S | 572 | T572I | aCt | aTt | 7 | 7 | B.1.243 | 0.000487 |
S | 572 | T572I | aCt | aTt | 7 | 7 | B.1.311 | 0.001922 |
S | 572 | T572I | aCt | aTt | 7 | 7 | C.36 | 0.006375 |
S | 572 | T572I | aCt | aTt | 7 | 7 | P.2 | 0.001306 |
S | 572 | T572I | aCt | aTt | 7 | 7 | R.1 | 0.00063 |
S | 572 | T572I | aCt | aTt | 6 | 6 | AY.111 | 0.001099 |
S | 572 | T572I | aCt | aTt | 6 | 6 | AY.114 | 0.001387 |
S | 572 | T572I | aCt | aTt | 6 | 6 | AY.24 | 0.002586 |
S | 572 | T572I | aCt | aTt | 6 | 6 | AY.4.4 | 0.002455 |
S | 572 | T572I | aCt | aTt | 6 | 6 | AY.46.5 | 0.00119 |
S | 572 | T572I | aCt | aTt | 6 | 6 | AY.9.2 | 0.00022 |
S | 572 | T572I | aCt | aTt | 6 | 6 | B.1.221 | 0.000426 |
S | 572 | T572I | aCt | aTt | 6 | 6 | B.1.369 | 0.001711 |
S | 572 | T572I | aCt | aTt | 6 | 6 | B.4 | 0.013245 |
S | 572 | T572I | aCt | aTt | 6 | 6 | C.36.3 | 0.003403 |
S | 572 | T572I | aCt | aTt | 6 | 6 | P.1.15 | 0.001394 |
S | 572 | T572I | aCt | aTt | 5 | 5 | AY.116 | 0.001434 |
S | 572 | T572I | aCt | aTt | 5 | 5 | AY.7 | 0.00098 |
S | 572 | T572I | aCt | aTt | 5 | 5 | AY.84 | 0.002187 |
S | 572 | T572I | aCt | aTt | 5 | 5 | B.1.1.192 | 0.011547 |
S | 572 | T572I | aCt | aTt | 4 | 4 | A.2.5 | 0.001996 |
S | 572 | T572I | aCt | aTt | 4 | 4 | AY.108 | 0.00441 |
S | 572 | T572I | aCt | aTt | 4 | 4 | AY.12 | 0.001264 |
S | 572 | T572I | aCt | aTt | 4 | 4 | AY.120 | 0.000149 |
S | 572 | T572I | aCt | aTt | 4 | 4 | AY.13 | 0.000644 |
S | 572 | T572I | aCt | aTt | 4 | 4 | AY.41 | 0.001176 |
S | 572 | T572I | aCt | aTt | 4 | 4 | AY.59 | 0.002119 |
S | 572 | T572I | aCt | aTt | 4 | 4 | AY.99 | 0.004197 |
S | 572 | T572I | aCt | aTt | 4 | 4 | B.1.1.214 | 0.000222 |
S | 572 | T572I | aCt | aTt | 4 | 4 | B.1.1.222 | 0.000816 |
S | 572 | T572I | aCt | aTt | 4 | 4 | B.1.1.318 | 0.001207 |
S | 572 | T572I | aCt | aTt | 4 | 4 | B.1.177.86 | 0.000734 |
S | 572 | T572I | aCt | aTt | 4 | 4 | B.1.258 | 0.000266 |
S | 572 | T572I | aCt | aTt | 4 | 4 | B.1.351.2 | 0.00121 |
S | 572 | T572I | aCt | aTt | 4 | 4 | B.1.438.1 | 0.000429 |
S | 572 | T572I | aCt | aTt | 4 | 4 | B.1.470 | 0.005618 |
S | 572 | T572I | aCt | aTt | 4 | 4 | B.1.561 | 0.001588 |
S | 572 | T572I | aCt | aTt | 4 | 4 | B.1.609 | 0.001918 |
S | 572 | T572I | aCt | aTt | 4 | 4 | B.1.623 | 0.002146 |
S | 572 | T572I | aCt | aTt | 4 | 4 | P.1.7 | 0.001277 |
S | 572 | T572I | aCt | aTt | 4 | 4 | U.1 | 0.051282 |
S | 572 | T572I | aCt | aTt | 3 | 3 | A.3 | 0.006289 |
S | 572 | T572I | aCt | aTt | 3 | 3 | AY.34 | 0.000291 |
S | 572 | T572I | aCt | aTt | 3 | 3 | AY.35 | 0.000699 |
S | 572 | T572I | aCt | aTt | 3 | 3 | AY.46.1 | 0.00308 |
S | 572 | T572I | aCt | aTt | 3 | 3 | AY.52 | 0.002443 |
S | 572 | T572I | aCt | aTt | 3 | 3 | AY.69 | 0.00056 |
S | 572 | T572I | aCt | aTt | 3 | 3 | AY.75.1 | 0.000541 |
S | 572 | T572I | aCt | aTt | 3 | 3 | AY.92 | 0.000862 |
S | 572 | T572I | aCt | aTt | 3 | 3 | AZ.3 | 0.004559 |
S | 572 | T572I | aCt | aTt | 3 | 3 | B.1.1.348 | 0.002389 |
S | 572 | T572I | aCt | aTt | 3 | 3 | B.1.139 | 0.002199 |
S | 572 | T572I | aCt | aTt | 3 | 3 | B.1.160.29 | 0.012658 |
S | 572 | T572I | aCt | aTt | 3 | 3 | B.1.177.73 | 0.001699 |
S | 572 | T572I | aCt | aTt | 3 | 3 | B.1.208 | 0.12 |
S | 572 | T572I | aCt | aTt | 3 | 3 | B.1.349 | 0.002144 |
S | 572 | T572I | aCt | aTt | 3 | 3 | B.1.356 | 0.005181 |
S | 572 | T572I | aCt | aTt | 3 | 3 | B.1.361 | 0.003866 |
S | 572 | T572I | aCt | aTt | 3 | 3 | B.1.404 | 0.003906 |
S | 572 | T572I | aCt | aTt | 3 | 3 | D.2 | 0.000225 |
S | 572 | T572I | aCt | aTt | 3 | 3 | P.1.10 | 0.000808 |
S | 572 | T572I | aCt | aTt | 3 | 3 | P.1.2 | 0.003468 |
S | 572 | T572I | aCt | aTt | 3 | 3 | P.3 | 0.004785 |
S | 572 | T572I | aCt | aTt | 2 | 2 | A | 0.000774 |
S | 572 | T572I | aCt | aTt | 2 | 2 | A.1 | 0.000564 |
S | 572 | T572I | aCt | aTt | 2 | 2 | A.2 | 0.001324 |
S | 572 | T572I | aCt | aTt | 2 | 2 | A.5 | 0.003846 |
S | 572 | T572I | aCt | aTt | 2 | 2 | AE.8 | 0.000978 |
S | 572 | T572I | aCt | aTt | 2 | 2 | AY.109 | 0.001479 |
S | 572 | T572I | aCt | aTt | 2 | 2 | AY.16.1 | 0.00094 |
S | 572 | T572I | aCt | aTt | 2 | 2 | AY.30 | 0.000791 |
S | 572 | T572I | aCt | aTt | 2 | 2 | AY.34.1 | 0.00102 |
S | 572 | T572I | aCt | aTt | 2 | 2 | AY.4.2.1 | 0.000298 |
S | 572 | T572I | aCt | aTt | 2 | 2 | AY.5.1 | 0.007519 |
S | 572 | T572I | aCt | aTt | 2 | 2 | AY.5.3 | 0.000675 |
S | 572 | T572I | aCt | aTt | 2 | 2 | AY.6 | 0.000082 |
S | 572 | T572I | aCt | aTt | 2 | 2 | AY.67 | 0.000929 |
S | 572 | T572I | aCt | aTt | 2 | 2 | AY.71 | 0.00095 |
S | 572 | T572I | aCt | aTt | 2 | 2 | AY.77 | 0.002255 |
S | 572 | T572I | aCt | aTt | 2 | 2 | AY.80 | 0.002257 |
S | 572 | T572I | aCt | aTt | 2 | 2 | AY.82 | 0.002714 |
S | 572 | T572I | aCt | aTt | 2 | 2 | AY.9 | 0.000135 |
S | 572 | T572I | aCt | aTt | 2 | 2 | AY.90 | 0.001369 |
S | 572 | T572I | aCt | aTt | 2 | 2 | B.1.1.10 | 0.00223 |
S | 572 | T572I | aCt | aTt | 2 | 2 | B.1.1.176 | 0.000879 |
S | 572 | T572I | aCt | aTt | 2 | 2 | B.1.1.28 | 0.000622 |
S | 572 | T572I | aCt | aTt | 2 | 2 | B.1.1.374 | 0.004751 |
S | 572 | T572I | aCt | aTt | 2 | 2 | B.1.1.407 | 0.083333 |
S | 572 | T572I | aCt | aTt | 2 | 2 | B.1.1.432 | 0.002532 |
S | 572 | T572I | aCt | aTt | 2 | 2 | B.1.1.70 | 0.000682 |
S | 572 | T572I | aCt | aTt | 2 | 2 | B.1.177.54 | 0.001213 |
S | 572 | T572I | aCt | aTt | 2 | 2 | B.1.177.57 | 0.000562 |
S | 572 | T572I | aCt | aTt | 2 | 2 | B.1.189 | 0.008584 |
S | 572 | T572I | aCt | aTt | 2 | 2 | B.1.199 | 0.008264 |
S | 572 | T572I | aCt | aTt | 2 | 2 | B.1.214.3 | 0.014286 |
S | 572 | T572I | aCt | aTt | 2 | 2 | B.1.36.38 | 0.003284 |
S | 572 | T572I | aCt | aTt | 2 | 2 | B.1.438 | 0.013072 |
S | 572 | T572I | aCt | aTt | 2 | 2 | B.1.517 | 0.000854 |
S | 572 | T572I | aCt | aTt | 2 | 2 | B.1.582 | 0.000981 |
S | 572 | T572I | aCt | aTt | 2 | 2 | B.6 | 0.00182 |
S | 572 | T572I | aCt | aTt | 2 | 2 | P.1.16 | 0.000748 |
S | 572 | T572I | aCt | aTt | 2 | 2 | Q.4 | 0.00091 |
S | 572 | T572I | aCt | aTt | 2 | 2 | Q.7 | 0.002222 |
S | 572 | T572I | aCt | aTt | 1 | 1 | A.27 | 0.001656 |
S | 572 | T572I | aCt | aTt | 1 | 1 | AD.2 | 0.000219 |
S | 572 | T572I | aCt | aTt | 1 | 1 | AS.2 | 0.015625 |
S | 572 | T572I | aCt | aTt | 1 | 1 | AY.106 | 0.000335 |
S | 572 | T572I | aCt | aTt | 1 | 1 | AY.120.1 | 0.000321 |
S | 572 | T572I | aCt | aTt | 1 | 1 | AY.120.2.1 | 0.000498 |
S | 572 | T572I | aCt | aTt | 1 | 1 | AY.2 | 0.000356 |
S | 572 | T572I | aCt | aTt | 1 | 1 | AY.23.1 | 0.000417 |
S | 572 | T572I | aCt | aTt | 1 | 1 | AY.37 | 0.000316 |
S | 572 | T572I | aCt | aTt | 1 | 1 | AY.38 | 0.000499 |
S | 572 | T572I | aCt | aTt | 1 | 1 | AY.39.2 | 0.001541 |
S | 572 | T572I | aCt | aTt | 1 | 1 | AY.4.3 | 0.000842 |
S | 572 | T572I | aCt | aTt | 1 | 1 | AY.40 | 0.000964 |
S | 572 | T572I | aCt | aTt | 1 | 1 | AY.46.2 | 0.000635 |
S | 572 | T572I | aCt | aTt | 1 | 1 | AY.46.4 | 0.000165 |
S | 572 | T572I | aCt | aTt | 1 | 1 | AY.48 | 0.000465 |
S | 572 | T572I | aCt | aTt | 1 | 1 | AY.51 | 0.000909 |
S | 572 | T572I | aCt | aTt | 1 | 1 | AY.58 | 0.000907 |
S | 572 | T572I | aCt | aTt | 1 | 1 | AY.7.2 | 0.000559 |
S | 572 | T572I | aCt | aTt | 1 | 1 | AY.78 | 0.001541 |
S | 572 | T572I | aCt | aTt | 1 | 1 | AY.86 | 0.00083 |
S | 572 | T572I | aCt | aTt | 1 | 1 | AY.9.1 | 0.000084 |
S | 572 | T572I | aCt | aTt | 1 | 1 | AY.93 | 0.000273 |
S | 572 | T572I | aCt | aTt | 1 | 1 | AY.94 | 0.000443 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.1.1 | 0.000327 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.1.101 | 0.01 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.1.194 | 0.00495 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.1.198 | 0.001468 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.1.216 | 0.00089 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.1.241 | 0.00207 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.1.253 | 0.002506 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.1.254 | 0.011236 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.1.263 | 0.001558 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.1.305 | 0.003861 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.1.312 | 0.001912 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.1.316 | 0.000925 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.1.33 | 0.000421 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.1.368 | 0.003086 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.1.369 | 0.000446 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.1.372 | 0.000689 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.1.409 | 0.002833 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.1.412 | 0.007634 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.1.434 | 0.000349 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.1.44 | 0.00241 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.1.517 | 0.006803 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.1.63 | 0.000386 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.1.71 | 0.006061 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.111 | 0.001175 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.128 | 0.000635 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.157 | 0.002985 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.160.9 | 0.007194 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.177.12 | 0.000152 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.177.15 | 0.000631 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.177.19 | 0.001431 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.177.21 | 0.000076 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.177.35 | 0.000691 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.177.46 | 0.000918 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.177.50 | 0.004695 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.177.56 | 0.000668 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.177.58 | 0.001332 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.177.60 | 0.000218 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.177.62 | 0.001192 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.177.69 | 0.001484 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.177.83 | 0.001481 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.177.9 | 0.001332 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.214.1 | 0.02 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.214.2 | 0.0006 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.232 | 0.000537 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.236 | 0.002053 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.237 | 0.004975 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.239 | 0.001221 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.240 | 0.000216 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.258.3 | 0.001675 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.273 | 0.012987 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.279 | 0.000514 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.332 | 0.003497 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.336 | 0.002439 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.36.10 | 0.004785 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.36.17 | 0.000494 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.36.21 | 0.00216 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.36.29 | 0.000517 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.362.2 | 0.004717 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.400 | 0.000429 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.408 | 0.00369 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.409 | 0.000781 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.416 | 0.001269 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.420 | 0.010417 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.423 | 0.010204 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.426 | 0.001009 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.429.1 | 0.012048 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.451 | 0.008197 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.452 | 0.013699 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.453 | 0.003236 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.466.2 | 0.000391 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.467 | 0.04 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.471 | 0.002732 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.474 | 0.001901 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.480 | 0.002488 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.498 | 0.020408 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.501 | 0.007353 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.509 | 0.000866 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.524 | 0.001406 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.527 | 0.003704 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.538 | 0.008065 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.551 | 0.00129 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.555 | 0.022222 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.567 | 0.003333 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.572 | 0.025 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.575 | 0.000303 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.577 | 0.000687 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.580 | 0.004065 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.603 | 0.010638 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.620 | 0.000946 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.631 | 0.003367 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.1.636 | 0.006711 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.11 | 0.005128 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.3.1 | 0.001658 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.4.7 | 0.010101 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.56 | 0.028571 |
S | 572 | T572I | aCt | aTt | 1 | 1 | B.6.6 | 0.000889 |
S | 572 | T572I | aCt | aTt | 1 | 1 | C.1.2 | 0.004255 |
S | 572 | T572I | aCt | aTt | 1 | 1 | C.35 | 0.000774 |
S | 572 | T572I | aCt | aTt | 1 | 1 | N.4 | 0.004255 |
S | 572 | T572I | aCt | aTt | 1 | 1 | P.1.12 | 0.000484 |
S | 572 | T572I | aCt | aTt | 1 | 1 | P.1.17 | 0.000162 |
S | 572 | T572I | aCt | aTt | 1 | 1 | P.1.6 | 0.001946 |
S | 572 | T572I | aCt | aTt | 1 | 1 | Q.2 | 0.000613 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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