CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 570 & Codon = gAt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S570A570DnonsyngCtgAt114467511445830.9999223270-23272

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S570A570DgCtgAt11445831144675All0.218915
S570A570DgCtgAt11128511112940B.1.1.70.99625
S570A570DgCtgAt78937893Q.10.997094
S570A570DgCtgAt68736873Q.30.996809
S570A570DgCtgAt58875889Q.80.970811
S570A570DgCtgAt31643165B.1.10.057398
S570A570DgCtgAt21972197Q.40.99909
S570A570DgCtgAt16281628Q.20.998773
S570A570DgCtgAt13441344B.10.01231
S570A570DgCtgAt898898Q.70.997778
S570A570DgCtgAt214214B.1.177.730.121178
S570A570DgCtgAt151151Q.61
S570A570DgCtgAt7878B.1.3750.063934
S570A570DgCtgAt7777B.1.1770.001014
S570A570DgCtgAt6464B.1.20.000564
S570A570DgCtgAt5959Q.51
S570A570DgCtgAt5454B0.006902
S570A570DgCtgAt5353B.1.5760.048051
S570A570DgCtgAt5252B.1.2210.003694
S570A570DgCtgAt4646B.1.5260.001081
S570A570DgCtgAt4545XA1
S570A570DgCtgAt4343B.1.1.4090.121813
S570A570DgCtgAt4141P.10.000646
S570A570DgCtgAt3939AY.440.000237
S570A570DgCtgAt3030B.1.617.20.000113
S570A570DgCtgAt2929AY.430.000128
S570A570DgCtgAt2929B.1.1.5070.252174
S570A570DgCtgAt2929B.1.5960.002527
S570A570DgCtgAt2424AY.260.000679
S570A570DgCtgAt2121B.1.1.3120.040153
S570A570DgCtgAt2020B.1.1.2200.037175
S570A570DgCtgAt2020B.1.4290.000471
S570A570DgCtgAt1919P.1.10.006036
S570A570DgCtgAt1818B.1.1.5280.086538
S570A570DgCtgAt1818B.1.6370.001315
S570A570DgCtgAt1717B.1.1.5190.000675
S570A570DgCtgAt1616B.1.1.1610.056537
S570A570DgCtgAt1414A.2.50.006986
S570A570DgCtgAt1414AY.290.000221
S570A570DgCtgAt1414B.1.1600.000437
S570A570DgCtgAt12120.666667
S570A570DgCtgAt1212P.1.160.004489
S570A570DgCtgAt1111B.1.3510.000327
S570A570DgCtgAt1010AY.300.003957
S570A570DgCtgAt1010C.370.001161
S570A570DgCtgAt1010P.1.150.002323
S570A570DgCtgAt99AY.1020.000239
S570A570DgCtgAt99B.1.177.70.001484
S570A570DgCtgAt99C.36.30.005105
S570A570DgCtgAt88AY.420.000322
S570A570DgCtgAt88B.1.1.390.004077
S570A570DgCtgAt77AY.1000.000322
S570A570DgCtgAt77AY.390.000173
S570A570DgCtgAt77B.1.1390.005132
S570A570DgCtgAt77B.1.4270.000353
S570A570DgCtgAt77B.1.6090.003356
S570A570DgCtgAt77B.1.6230.003755
S570A570DgCtgAt77B.1.6280.002467
S570A570DgCtgAt66AY.1030.000037
S570A570DgCtgAt66AY.920.001724
S570A570DgCtgAt66B.1.1.700.002046
S570A570DgCtgAt66B.1.2580.000399
S570A570DgCtgAt66B.1.5250.000679
S570A570DgCtgAt66B.1.5950.001566
S570A570DgCtgAt66P.1.120.002904
S570A570DgCtgAt66P.1.170.000971
S570A570DgCtgAt55AY.680.001369
S570A570DgCtgAt55B.1.1.100.005574
S570A570DgCtgAt55B.1.1.2940.006329
S570A570DgCtgAt55B.1.1570.014925
S570A570DgCtgAt55B.1.4110.018519
S570A570DgCtgAt55B.1.5640.002129
S570A570DgCtgAt44A0.001548
S570A570DgCtgAt44AY.470.000124
S570A570DgCtgAt44AY.9.20.000147
S570A570DgCtgAt44B.1.1.280.001245
S570A570DgCtgAt44B.1.1.5230.00625
S570A570DgCtgAt44B.1.1.5250.021858
S570A570DgCtgAt44B.1.3670.00317
S570A570DgCtgAt33AY.1180.000188
S570A570DgCtgAt33AY.230.000209
S570A570DgCtgAt33AY.30.00003
S570A570DgCtgAt33AY.40.000005
S570A570DgCtgAt33AY.460.000312
S570A570DgCtgAt33AY.520.002443
S570A570DgCtgAt33B.1.1.2050.011152
S570A570DgCtgAt33B.1.1.3170.001235
S570A570DgCtgAt33B.1.177.310.034483
S570A570DgCtgAt33B.1.177.860.00055
S570A570DgCtgAt33B.1.2060.002447
S570A570DgCtgAt33B.1.214.20.001799
S570A570DgCtgAt33B.1.3110.000824
S570A570DgCtgAt33B.1.351.50.001799
S570A570DgCtgAt33B.1.4620.021739
S570A570DgCtgAt33B.1.5330.028846
S570A570DgCtgAt33B.1.5800.012195
S570A570DgCtgAt33B.1.5820.001472
S570A570DgCtgAt33B.1.5990.010949
S570A570DgCtgAt33B.1.6270.006061
S570A570DgCtgAt33B.1.6330.125
S570A570DgCtgAt22AY.1130.000285
S570A570DgCtgAt22AY.20.000712
S570A570DgCtgAt22AY.240.000862
S570A570DgCtgAt22AY.330.000134
S570A570DgCtgAt22AY.450.000243
S570A570DgCtgAt22AY.50.000041
S570A570DgCtgAt22AY.590.001059
S570A570DgCtgAt22AY.620.000871
S570A570DgCtgAt22AY.75.10.000361
S570A570DgCtgAt22AY.9.10.000167
S570A570DgCtgAt22AY.950.001522
S570A570DgCtgAt22B.1.1.1480.017544
S570A570DgCtgAt22B.1.1.2070.002364
S570A570DgCtgAt22B.1.1.2160.001781
S570A570DgCtgAt22B.1.1.2910.001485
S570A570DgCtgAt22B.1.1.3150.016949
S570A570DgCtgAt22B.1.1.3700.025316
S570A570DgCtgAt22B.1.1.3740.004751
S570A570DgCtgAt22B.1.1.990.047619
S570A570DgCtgAt22B.1.160.160.001859
S570A570DgCtgAt22B.1.1700.008621
S570A570DgCtgAt22B.1.177.440.001038
S570A570DgCtgAt22B.1.360.000292
S570A570DgCtgAt22B.1.36.100.009569
S570A570DgCtgAt22B.1.3960.001411
S570A570DgCtgAt22B.1.3970.009709
S570A570DgCtgAt22B.1.5240.002813
S570A570DgCtgAt22B.1.5650.001621
S570A570DgCtgAt22B.1.5770.001375
S570A570DgCtgAt22B.1.617.10.000258
S570A570DgCtgAt22B.1.6190.001742
S570A570DgCtgAt22B.1.6200.001892
S570A570DgCtgAt22B.1.6210.000177
S570A570DgCtgAt22B.1.6360.013423
S570A570DgCtgAt22C.350.001548
S570A570DgCtgAt22P.1.130.001797
S570A570DgCtgAt22P.1.70.000639
S570A570DgCtgAt22R.10.00018
S570A570DgCtgAt11A.2.5.20.001572
S570A570DgCtgAt11A.270.001656
S570A570DgCtgAt11AJ.10.045455
S570A570DgCtgAt11AY.1110.000183
S570A570DgCtgAt11AY.1170.000085
S570A570DgCtgAt11AY.1190.000035
S570A570DgCtgAt11AY.1210.000135
S570A570DgCtgAt11AY.16.10.00047
S570A570DgCtgAt11AY.250.000006
S570A570DgCtgAt11AY.340.000097
S570A570DgCtgAt11AY.34.10.00051
S570A570DgCtgAt11AY.4.30.000842
S570A570DgCtgAt11AY.550.000917
S570A570DgCtgAt11AY.750.000056
S570A570DgCtgAt11AY.840.000437
S570A570DgCtgAt11AY.850.000427
S570A570DgCtgAt11AY.990.001049
S570A570DgCtgAt11AZ.30.00152
S570A570DgCtgAt11B.1.1.10.000327
S570A570DgCtgAt11B.1.1.1350.004695
S570A570DgCtgAt11B.1.1.1410.002012
S570A570DgCtgAt11B.1.1.1710.003676
S570A570DgCtgAt11B.1.1.2220.000204
S570A570DgCtgAt11B.1.1.2310.003096
S570A570DgCtgAt11B.1.1.2360.006897
S570A570DgCtgAt11B.1.1.2370.005405
S570A570DgCtgAt11B.1.1.250.000569
S570A570DgCtgAt11B.1.1.2650.003155
S570A570DgCtgAt11B.1.1.2690.001353
S570A570DgCtgAt11B.1.1.2770.000759
S570A570DgCtgAt11B.1.1.2990.012195
S570A570DgCtgAt11B.1.1.340.013158
S570A570DgCtgAt11B.1.1.3650.005587
S570A570DgCtgAt11B.1.1.3720.000689
S570A570DgCtgAt11B.1.1.3890.006061
S570A570DgCtgAt11B.1.1.4170.002703
S570A570DgCtgAt11B.1.1.4320.001266
S570A570DgCtgAt11B.1.1.4620.008621
S570A570DgCtgAt11B.1.1.4640.001473
S570A570DgCtgAt11B.1.1.5240.020833
S570A570DgCtgAt11B.1.1.5260.003546
S570A570DgCtgAt11B.1.1.540.003021
S570A570DgCtgAt11B.1.1.550.012987
S570A570DgCtgAt11B.1.1.560.017857
S570A570DgCtgAt11B.1.1.830.00271
S570A570DgCtgAt11B.1.1.890.006061
S570A570DgCtgAt11B.1.160.140.002119
S570A570DgCtgAt11B.1.160.70.002079
S570A570DgCtgAt11B.1.177.120.000152
S570A570DgCtgAt11B.1.177.150.000631
S570A570DgCtgAt11B.1.177.510.004566
S570A570DgCtgAt11B.1.177.560.000668
S570A570DgCtgAt11B.1.177.580.001332
S570A570DgCtgAt11B.1.177.60.000977
S570A570DgCtgAt11B.1.177.750.001041
S570A570DgCtgAt11B.1.2100.002132
S570A570DgCtgAt11B.1.2140.003663
S570A570DgCtgAt11B.1.2340.000132
S570A570DgCtgAt11B.1.2370.004975
S570A570DgCtgAt11B.1.2410.000812
S570A570DgCtgAt11B.1.2420.018868
S570A570DgCtgAt11B.1.2430.00007
S570A570DgCtgAt11B.1.258.110.000396
S570A570DgCtgAt11B.1.258.140.00098
S570A570DgCtgAt11B.1.258.170.000104
S570A570DgCtgAt11B.1.2600.003344
S570A570DgCtgAt11B.1.3010.005917
S570A570DgCtgAt11B.1.3360.002439
S570A570DgCtgAt11B.1.3490.000715
S570A570DgCtgAt11B.1.3620.001541
S570A570DgCtgAt11B.1.3690.000285
S570A570DgCtgAt11B.1.3990.001934
S570A570DgCtgAt11B.1.415.10.007576
S570A570DgCtgAt11B.1.416.10.001563
S570A570DgCtgAt11B.1.4170.028571
S570A570DgCtgAt11B.1.466.20.000391
S570A570DgCtgAt11B.1.4730.019231
S570A570DgCtgAt11B.1.5170.000427
S570A570DgCtgAt11B.1.5210.004975
S570A570DgCtgAt11B.1.5300.007143
S570A570DgCtgAt11B.1.5670.003333
S570A570DgCtgAt11B.1.5740.002151
S570A570DgCtgAt11B.1.5750.000303
S570A570DgCtgAt11B.1.5900.004545
S570A570DgCtgAt11B.1.6060.006024
S570A570DgCtgAt11B.1.621.10.000506
S570A570DgCtgAt11B.1.6250.002353
S570A570DgCtgAt11B.1.6310.003367
S570A570DgCtgAt11B.1.6320.006711
S570A570DgCtgAt11B.1.6340.003425
S570A570DgCtgAt11B.1.780.008547
S570A570DgCtgAt11B.1.940.027027
S570A570DgCtgAt11C.360.000911
S570A570DgCtgAt11C.380.008065
S570A570DgCtgAt11C.390.018868
S570A570DgCtgAt11D.20.000075
S570A570DgCtgAt11P.1.100.000269
S570A570DgCtgAt11W.10.008696

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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