CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 570 | A570D | nonsyn | gCt | gAt | 1144675 | 1144583 | 0.99992 | 23270-23272 | |
S | 570 | A570D | nonsyn | gCT | gAC | 1144675 | 92 | 0.0000803722 | 23270-23272 | |
S | 570 | A570S | nonsyn | Gct | Tct | 3215 | 3215 | 1 | 23270-23272 | |
S | 570 | A570V | nonsyn | gCt | gTt | 913 | 911 | 0.997809 | 23270-23272 | |
S | 570 | A570V | nonsyn | gCT | gTC | 913 | 1 | 0.00109529 | 23270-23272 | |
S | 570 | A570V | nonsyn | gCT | gTG | 913 | 1 | 0.00109529 | 23270-23272 | |
S | 570 | A570A | syn | gcT | gcC | 231 | 169 | 0.731602 | 23270-23272 | |
S | 570 | A570A | syn | gcT | gcG | 231 | 39 | 0.168831 | 23270-23272 | |
S | 570 | A570A | syn | gcT | gcA | 231 | 23 | 0.0995671 | 23270-23272 | |
S | 570 | A570Y | nonsyn | GCt | TAt | 144 | 144 | 1 | 23270-23272 | |
S | 570 | A570T | nonsyn | Gct | Act | 86 | 86 | 1 | 23270-23272 | |
S | 570 | A570G | nonsyn | gCt | gGt | 40 | 40 | 1 | 23270-23272 | |
S | 570 | A570del | del | GCT | --- | 12 | 12 | 1 | 23270-23272 | |
S | 570 | A570H | nonsyn | GCt | CAt | 5 | 5 | 1 | 23270-23272 | |
S | 570 | A570P | nonsyn | Gct | Cct | 4 | 4 | 1 | 23270-23272 | |
S | 570 | A570del1 | del | gCt | g-t | 2 | 2 | 1 | 23270-23272 | |
S | 570 | A570R | nonsyn | GCT | AGA | 2 | 2 | 1 | 23270-23272 | |
S | 570 | A570E | nonsyn | gCT | gAA | 1 | 1 | 1 | 23270-23272 | |
S | 570 | A570N | nonsyn | GCt | AAt | 1 | 1 | 1 | 23270-23272 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 570 | A570D | gCt | gAt | 1144583 | 1144675 | All | 0.218915 |
S | 570 | A570D | gCT | gAC | 92 | 1144675 | All | 0.000018 |
S | 570 | A570D | gCt | gAt | 1112851 | 1112940 | B.1.1.7 | 0.99625 |
S | 570 | A570D | gCT | gAC | 89 | 1112940 | B.1.1.7 | 0.00008 |
S | 570 | A570D | gCt | gAt | 7893 | 7893 | Q.1 | 0.997094 |
S | 570 | A570D | gCt | gAt | 6873 | 6873 | Q.3 | 0.996809 |
S | 570 | A570D | gCt | gAt | 5887 | 5889 | Q.8 | 0.970811 |
S | 570 | A570D | gCT | gAC | 2 | 5889 | Q.8 | 0.00033 |
S | 570 | A570S | Gct | Tct | 3215 | 3215 | All | 0.000615 |
S | 570 | A570D | gCt | gAt | 3164 | 3165 | B.1.1 | 0.057398 |
S | 570 | A570D | gCT | gAC | 1 | 3165 | B.1.1 | 0.000018 |
S | 570 | A570D | gCt | gAt | 2197 | 2197 | Q.4 | 0.99909 |
S | 570 | A570D | gCt | gAt | 1628 | 1628 | Q.2 | 0.998773 |
S | 570 | A570D | gCt | gAt | 1344 | 1344 | B.1 | 0.01231 |
S | 570 | A570S | Gct | Tct | 1201 | 1201 | AY.43 | 0.005321 |
S | 570 | A570S | Gct | Tct | 1033 | 1033 | B.1.617.2 | 0.00389 |
S | 570 | A570V | gCt | gTt | 911 | 913 | All | 0.000174 |
S | 570 | A570V | gCT | gTG | 1 | 913 | All | 0 |
S | 570 | A570V | gCT | gTC | 1 | 913 | All | 0 |
S | 570 | A570D | gCt | gAt | 898 | 898 | Q.7 | 0.997778 |
S | 570 | A570V | gCt | gTt | 323 | 323 | B.1.2 | 0.002844 |
S | 570 | A570A | gcT | gcC | 169 | 231 | All | 0.000032 |
S | 570 | A570A | gcT | gcG | 39 | 231 | All | 0.000007 |
S | 570 | A570A | gcT | gcA | 23 | 231 | All | 0.000004 |
S | 570 | A570D | gCt | gAt | 214 | 214 | B.1.177.73 | 0.121178 |
S | 570 | A570S | Gct | Tct | 196 | 196 | B.1.438.1 | 0.021023 |
S | 570 | A570S | Gct | Tct | 178 | 178 | AY.4 | 0.000277 |
S | 570 | A570D | gCt | gAt | 151 | 151 | Q.6 | 1 |
S | 570 | A570Y | GCt | TAt | 144 | 144 | All | 0.000028 |
S | 570 | A570Y | GCt | TAt | 143 | 143 | B.1.1.7 | 0.000128 |
S | 570 | A570T | Gct | Act | 86 | 86 | All | 0.000016 |
S | 570 | A570D | gCt | gAt | 78 | 78 | B.1.375 | 0.063934 |
S | 570 | A570D | gCt | gAt | 77 | 77 | B.1.177 | 0.001014 |
S | 570 | A570V | gCt | gTt | 70 | 70 | AY.4 | 0.000109 |
S | 570 | A570D | gCt | gAt | 64 | 64 | B.1.2 | 0.000564 |
S | 570 | A570S | Gct | Tct | 63 | 63 | AY.103 | 0.000391 |
S | 570 | A570D | gCt | gAt | 59 | 59 | Q.5 | 1 |
S | 570 | A570D | gCt | gAt | 54 | 54 | B | 0.006902 |
S | 570 | A570D | gCt | gAt | 53 | 53 | B.1.576 | 0.048051 |
S | 570 | A570V | gCt | gTt | 52 | 52 | B.1.1 | 0.000943 |
S | 570 | A570D | gCt | gAt | 52 | 52 | B.1.221 | 0.003694 |
S | 570 | A570V | gCt | gTt | 47 | 47 | B.1 | 0.00043 |
S | 570 | A570D | gCt | gAt | 46 | 46 | B.1.526 | 0.001081 |
S | 570 | A570D | gCt | gAt | 45 | 45 | XA | 1 |
S | 570 | A570A | gcT | gcC | 39 | 44 | B.1.617.2 | 0.000147 |
S | 570 | A570A | gcT | gcG | 4 | 44 | B.1.617.2 | 0.000015 |
S | 570 | A570A | gcT | gcA | 1 | 44 | B.1.617.2 | 0.000004 |
S | 570 | A570S | Gct | Tct | 43 | 43 | AY.44 | 0.000262 |
S | 570 | A570S | Gct | Tct | 43 | 43 | AY.7.2 | 0.024049 |
S | 570 | A570D | gCt | gAt | 43 | 43 | B.1.1.409 | 0.121813 |
S | 570 | A570D | gCt | gAt | 41 | 41 | P.1 | 0.000646 |
S | 570 | A570G | gCt | gGt | 40 | 40 | All | 0.000008 |
S | 570 | A570D | gCt | gAt | 39 | 39 | AY.44 | 0.000237 |
S | 570 | A570V | gCt | gTt | 34 | 34 | B.1.1.7 | 0.00003 |
S | 570 | A570V | gCt | gTt | 31 | 31 | B.1.526 | 0.000729 |
S | 570 | A570D | gCt | gAt | 30 | 30 | B.1.617.2 | 0.000113 |
S | 570 | A570D | gCt | gAt | 29 | 29 | AY.43 | 0.000128 |
S | 570 | A570A | gcT | gcC | 29 | 29 | AY.7.1 | 0.003268 |
S | 570 | A570D | gCt | gAt | 29 | 29 | B.1.1.507 | 0.252174 |
S | 570 | A570D | gCt | gAt | 29 | 29 | B.1.596 | 0.002527 |
S | 570 | A570D | gCt | gAt | 24 | 24 | AY.26 | 0.000679 |
S | 570 | A570D | gCt | gAt | 21 | 21 | B.1.1.312 | 0.040153 |
S | 570 | A570S | Gct | Tct | 21 | 21 | B.1.2 | 0.000185 |
S | 570 | A570S | Gct | Tct | 20 | 20 | AY.102 | 0.00053 |
S | 570 | A570S | Gct | Tct | 20 | 20 | AY.39 | 0.000494 |
S | 570 | A570D | gCt | gAt | 20 | 20 | B.1.1.220 | 0.037175 |
S | 570 | A570D | gCt | gAt | 20 | 20 | B.1.429 | 0.000471 |
S | 570 | A570V | gCt | gTt | 20 | 20 | B.1.617.2 | 0.000075 |
S | 570 | A570V | gCt | gTt | 20 | 20 | P.1 | 0.000315 |
S | 570 | A570V | gCt | gTt | 19 | 19 | A.28 | 0.050265 |
S | 570 | A570S | Gct | Tct | 19 | 19 | AY.23 | 0.001325 |
S | 570 | A570V | gCt | gTt | 19 | 19 | B.1.525 | 0.00215 |
S | 570 | A570T | Gct | Act | 19 | 19 | B.1.617.2 | 0.000072 |
S | 570 | A570S | Gct | Tct | 19 | 19 | P.1 | 0.000299 |
S | 570 | A570D | gCt | gAt | 19 | 19 | P.1.1 | 0.006036 |
S | 570 | A570D | gCt | gAt | 18 | 18 | B.1.1.528 | 0.086538 |
S | 570 | A570G | gCt | gGt | 18 | 18 | B.1.1.7 | 0.000016 |
S | 570 | A570D | gCt | gAt | 18 | 18 | B.1.637 | 0.001315 |
S | 570 | A570V | gCt | gTt | 17 | 17 | AY.25 | 0.000102 |
S | 570 | A570D | gCt | gAt | 17 | 17 | B.1.1.519 | 0.000675 |
S | 570 | A570S | Gct | Tct | 17 | 17 | B.1.36 | 0.00248 |
S | 570 | A570A | gcT | gcG | 16 | 17 | B.1.637 | 0.001169 |
S | 570 | A570A | gcT | gcC | 1 | 17 | B.1.637 | 0.000073 |
S | 570 | A570A | gcT | gcC | 15 | 16 | AY.25 | 0.00009 |
S | 570 | A570A | gcT | gcG | 1 | 16 | AY.25 | 0.000006 |
S | 570 | A570S | Gct | Tct | 16 | 16 | B.1 | 0.000147 |
S | 570 | A570D | gCt | gAt | 16 | 16 | B.1.1.161 | 0.056537 |
S | 570 | A570S | Gct | Tct | 15 | 15 | AY.100 | 0.00069 |
S | 570 | A570V | gCt | gTt | 15 | 15 | AY.44 | 0.000091 |
S | 570 | A570G | gCt | gGt | 15 | 15 | B.1.617.2 | 0.000056 |
S | 570 | A570D | gCt | gAt | 14 | 14 | A.2.5 | 0.006986 |
S | 570 | A570D | gCt | gAt | 14 | 14 | AY.29 | 0.000221 |
S | 570 | A570T | Gct | Act | 14 | 14 | AY.4 | 0.000022 |
S | 570 | A570V | gCt | gTt | 14 | 14 | AY.4.2 | 0.000304 |
S | 570 | A570A | gcT | gcC | 13 | 14 | AY.43 | 0.000058 |
S | 570 | A570A | gcT | gcA | 1 | 14 | AY.43 | 0.000004 |
S | 570 | A570D | gCt | gAt | 14 | 14 | B.1.160 | 0.000437 |
S | 570 | A570V | gCt | gTt | 14 | 14 | B.1.177.87 | 0.010189 |
S | 570 | A570D | gCt | gAt | 12 | 12 | 0.666667 | |
S | 570 | A570del | GCT | --- | 12 | 12 | All | 0.000002 |
S | 570 | A570S | Gct | Tct | 12 | 12 | AY.118 | 0.000752 |
S | 570 | A570S | Gct | Tct | 12 | 12 | AY.84 | 0.005249 |
S | 570 | A570D | gCt | gAt | 12 | 12 | P.1.16 | 0.004489 |
S | 570 | A570S | Gct | Tct | 11 | 11 | AY.119 | 0.000388 |
S | 570 | A570D | gCt | gAt | 11 | 11 | B.1.351 | 0.000327 |
S | 570 | A570D | gCt | gAt | 10 | 10 | AY.30 | 0.003957 |
S | 570 | A570A | gcT | gcC | 6 | 10 | AY.44 | 0.000037 |
S | 570 | A570A | gcT | gcA | 3 | 10 | AY.44 | 0.000018 |
S | 570 | A570A | gcT | gcG | 1 | 10 | AY.44 | 0.000006 |
S | 570 | A570S | Gct | Tct | 10 | 10 | AY.45 | 0.001217 |
S | 570 | A570D | gCt | gAt | 10 | 10 | C.37 | 0.001161 |
S | 570 | A570D | gCt | gAt | 10 | 10 | P.1.15 | 0.002323 |
S | 570 | A570D | gCt | gAt | 9 | 9 | AY.102 | 0.000239 |
S | 570 | A570S | Gct | Tct | 9 | 9 | AY.120.2.1 | 0.004484 |
S | 570 | A570S | Gct | Tct | 9 | 9 | AY.25 | 0.000054 |
S | 570 | A570T | Gct | Act | 9 | 9 | AY.25 | 0.000054 |
S | 570 | A570A | gcT | gcC | 9 | 9 | AY.29 | 0.000142 |
S | 570 | A570V | gCt | gTt | 9 | 9 | AY.42 | 0.000362 |
S | 570 | A570V | gCt | gTt | 9 | 9 | B.1.177.56 | 0.006008 |
S | 570 | A570D | gCt | gAt | 9 | 9 | B.1.177.7 | 0.001484 |
S | 570 | A570D | gCt | gAt | 9 | 9 | C.36.3 | 0.005105 |
S | 570 | A570A | gcT | gcC | 7 | 8 | AY.102 | 0.000186 |
S | 570 | A570A | gcT | gcA | 1 | 8 | AY.102 | 0.000027 |
S | 570 | A570V | gCt | gTt | 8 | 8 | AY.26 | 0.000226 |
S | 570 | A570A | gcT | gcC | 5 | 8 | AY.4 | 0.000008 |
S | 570 | A570A | gcT | gcA | 3 | 8 | AY.4 | 0.000005 |
S | 570 | A570D | gCt | gAt | 8 | 8 | AY.42 | 0.000322 |
S | 570 | A570A | gcT | gcG | 6 | 8 | AY.47 | 0.000187 |
S | 570 | A570A | gcT | gcA | 2 | 8 | AY.47 | 0.000062 |
S | 570 | A570D | gCt | gAt | 8 | 8 | B.1.1.39 | 0.004077 |
S | 570 | A570S | Gct | Tct | 8 | 8 | B.1.1.426 | 0.285714 |
S | 570 | A570A | gcT | gcC | 7 | 8 | B.1.2 | 0.000062 |
S | 570 | A570A | gcT | gcA | 1 | 8 | B.1.2 | 0.000009 |
S | 570 | A570V | gCt | gTt | 8 | 8 | B.1.221 | 0.000568 |
S | 570 | A570D | gCt | gAt | 7 | 7 | AY.100 | 0.000322 |
S | 570 | A570T | Gct | Act | 7 | 7 | AY.20 | 0.000272 |
S | 570 | A570S | Gct | Tct | 7 | 7 | AY.26 | 0.000198 |
S | 570 | A570D | gCt | gAt | 7 | 7 | AY.39 | 0.000173 |
S | 570 | A570S | Gct | Tct | 7 | 7 | AY.42 | 0.000282 |
S | 570 | A570V | gCt | gTt | 7 | 7 | AY.43 | 0.000031 |
S | 570 | A570S | Gct | Tct | 7 | 7 | B.1.1 | 0.000127 |
S | 570 | A570D | gCt | gAt | 7 | 7 | B.1.139 | 0.005132 |
S | 570 | A570S | Gct | Tct | 7 | 7 | B.1.177.57 | 0.001967 |
S | 570 | A570D | gCt | gAt | 7 | 7 | B.1.427 | 0.000353 |
S | 570 | A570D | gCt | gAt | 7 | 7 | B.1.609 | 0.003356 |
S | 570 | A570D | gCt | gAt | 7 | 7 | B.1.623 | 0.003755 |
S | 570 | A570D | gCt | gAt | 7 | 7 | B.1.628 | 0.002467 |
S | 570 | A570V | gCt | gTt | 6 | 6 | A | 0.002322 |
S | 570 | A570D | gCt | gAt | 6 | 6 | AY.103 | 0.000037 |
S | 570 | A570S | Gct | Tct | 6 | 6 | AY.3 | 0.00006 |
S | 570 | A570S | Gct | Tct | 6 | 6 | AY.33 | 0.000401 |
S | 570 | A570S | Gct | Tct | 6 | 6 | AY.69 | 0.00112 |
S | 570 | A570D | gCt | gAt | 6 | 6 | AY.92 | 0.001724 |
S | 570 | A570D | gCt | gAt | 6 | 6 | B.1.1.70 | 0.002046 |
S | 570 | A570S | Gct | Tct | 6 | 6 | B.1.177.85 | 0.032609 |
S | 570 | A570D | gCt | gAt | 6 | 6 | B.1.258 | 0.000399 |
S | 570 | A570T | Gct | Act | 6 | 6 | B.1.351 | 0.000178 |
S | 570 | A570S | Gct | Tct | 6 | 6 | B.1.351 | 0.000178 |
S | 570 | A570V | gCt | gTt | 6 | 6 | B.1.36.18 | 0.002521 |
S | 570 | A570S | Gct | Tct | 6 | 6 | B.1.509 | 0.005195 |
S | 570 | A570D | gCt | gAt | 6 | 6 | B.1.525 | 0.000679 |
S | 570 | A570D | gCt | gAt | 6 | 6 | B.1.595 | 0.001566 |
S | 570 | A570D | gCt | gAt | 6 | 6 | P.1.12 | 0.002904 |
S | 570 | A570D | gCt | gAt | 6 | 6 | P.1.17 | 0.000971 |
S | 570 | A570H | GCt | CAt | 5 | 5 | All | 0.000001 |
S | 570 | A570V | gCt | gTt | 5 | 5 | AY.100 | 0.00023 |
S | 570 | A570S | Gct | Tct | 5 | 5 | AY.111 | 0.000916 |
S | 570 | A570A | gcT | gcC | 4 | 5 | AY.3 | 0.00004 |
S | 570 | A570A | gcT | gcA | 1 | 5 | AY.3 | 0.00001 |
S | 570 | A570V | gCt | gTt | 5 | 5 | AY.33 | 0.000334 |
S | 570 | A570S | Gct | Tct | 5 | 5 | AY.39.1 | 0.000198 |
S | 570 | A570S | Gct | Tct | 5 | 5 | AY.5.4 | 0.001384 |
S | 570 | A570D | gCt | gAt | 5 | 5 | AY.68 | 0.001369 |
S | 570 | A570D | gCt | gAt | 5 | 5 | B.1.1.10 | 0.005574 |
S | 570 | A570D | gCt | gAt | 5 | 5 | B.1.1.294 | 0.006329 |
S | 570 | A570V | gCt | gTt | 5 | 5 | B.1.1.519 | 0.000199 |
S | 570 | A570S | Gct | Tct | 5 | 5 | B.1.1.519 | 0.000199 |
S | 570 | A570H | GCt | CAt | 5 | 5 | B.1.1.7 | 0.000004 |
S | 570 | A570D | gCt | gAt | 5 | 5 | B.1.157 | 0.014925 |
S | 570 | A570V | gCt | gTt | 5 | 5 | B.1.177 | 0.000066 |
S | 570 | A570S | Gct | Tct | 5 | 5 | B.1.177.86 | 0.000917 |
S | 570 | A570D | gCt | gAt | 5 | 5 | B.1.411 | 0.018519 |
S | 570 | A570S | Gct | Tct | 5 | 5 | B.1.429 | 0.000118 |
S | 570 | A570D | gCt | gAt | 5 | 5 | B.1.564 | 0.002129 |
S | 570 | A570V | gCt | gTt | 5 | 5 | B.1.596 | 0.000436 |
S | 570 | A570D | gCt | gAt | 4 | 4 | A | 0.001548 |
S | 570 | A570V | gCt | gTt | 4 | 4 | AD.2 | 0.000876 |
S | 570 | A570P | Gct | Cct | 4 | 4 | All | 0.000001 |
S | 570 | A570S | Gct | Tct | 4 | 4 | AY.16 | 0.001519 |
S | 570 | A570V | gCt | gTt | 4 | 4 | AY.29 | 0.000063 |
S | 570 | A570G | gCt | gGt | 4 | 4 | AY.4 | 0.000006 |
S | 570 | A570A | gcT | gcC | 4 | 4 | AY.46.1 | 0.004107 |
S | 570 | A570V | gCt | gTt | 4 | 4 | AY.47 | 0.000124 |
S | 570 | A570D | gCt | gAt | 4 | 4 | AY.47 | 0.000124 |
S | 570 | A570S | Gct | Tct | 4 | 4 | AY.5 | 0.000083 |
S | 570 | A570D | gCt | gAt | 4 | 4 | AY.9.2 | 0.000147 |
S | 570 | A570A | gcT | gcC | 3 | 4 | B.1 | 0.000027 |
S | 570 | A570A | gcT | gcG | 1 | 4 | B.1 | 0.000009 |
S | 570 | A570S | Gct | Tct | 4 | 4 | B.1.1.218 | 0.030769 |
S | 570 | A570D | gCt | gAt | 4 | 4 | B.1.1.28 | 0.001245 |
S | 570 | A570D | gCt | gAt | 4 | 4 | B.1.1.523 | 0.00625 |
S | 570 | A570D | gCt | gAt | 4 | 4 | B.1.1.525 | 0.021858 |
S | 570 | A570S | Gct | Tct | 4 | 4 | B.1.160 | 0.000125 |
S | 570 | A570V | gCt | gTt | 4 | 4 | B.1.177.73 | 0.002265 |
S | 570 | A570V | gCt | gTt | 3 | 4 | B.1.351 | 0.000089 |
S | 570 | A570V | gCT | gTG | 1 | 4 | B.1.351 | 0.00003 |
S | 570 | A570S | Gct | Tct | 4 | 4 | B.1.36.22 | 0.004831 |
S | 570 | A570D | gCt | gAt | 4 | 4 | B.1.367 | 0.00317 |
S | 570 | A570A | gcT | gcC | 4 | 4 | B.1.526 | 0.000094 |
S | 570 | A570S | Gct | Tct | 4 | 4 | B.1.595 | 0.001044 |
S | 570 | A570S | Gct | Tct | 4 | 4 | C.37 | 0.000464 |
S | 570 | A570A | gcT | gcC | 3 | 3 | AY.103 | 0.000019 |
S | 570 | A570D | gCt | gAt | 3 | 3 | AY.118 | 0.000188 |
S | 570 | A570S | Gct | Tct | 3 | 3 | AY.120 | 0.000112 |
S | 570 | A570V | gCt | gTt | 3 | 3 | AY.20 | 0.000117 |
S | 570 | A570D | gCt | gAt | 3 | 3 | AY.23 | 0.000209 |
S | 570 | A570A | gcT | gcG | 2 | 3 | AY.27 | 0.000129 |
S | 570 | A570A | gcT | gcC | 1 | 3 | AY.27 | 0.000065 |
S | 570 | A570D | gCt | gAt | 3 | 3 | AY.3 | 0.00003 |
S | 570 | A570S | Gct | Tct | 3 | 3 | AY.34.1 | 0.00153 |
S | 570 | A570D | gCt | gAt | 3 | 3 | AY.4 | 0.000005 |
S | 570 | A570D | gCt | gAt | 3 | 3 | AY.46 | 0.000312 |
S | 570 | A570D | gCt | gAt | 3 | 3 | AY.52 | 0.002443 |
S | 570 | A570S | Gct | Tct | 3 | 3 | AY.75 | 0.000168 |
S | 570 | A570V | gCt | gTt | 3 | 3 | AY.75 | 0.000168 |
S | 570 | A570V | gCt | gTt | 3 | 3 | AY.94 | 0.001328 |
S | 570 | A570D | gCt | gAt | 3 | 3 | B.1.1.205 | 0.011152 |
S | 570 | A570A | gcT | gcG | 3 | 3 | B.1.1.280 | 0.009259 |
S | 570 | A570D | gCt | gAt | 3 | 3 | B.1.1.317 | 0.001235 |
S | 570 | A570V | gCt | gTt | 3 | 3 | B.1.1.342 | 0.1875 |
S | 570 | A570V | gCt | gTt | 3 | 3 | B.1.1.83 | 0.00813 |
S | 570 | A570S | Gct | Tct | 3 | 3 | B.1.177 | 0.00004 |
S | 570 | A570V | gCt | gTt | 3 | 3 | B.1.177.12 | 0.000455 |
S | 570 | A570D | gCt | gAt | 3 | 3 | B.1.177.31 | 0.034483 |
S | 570 | A570D | gCt | gAt | 3 | 3 | B.1.177.86 | 0.00055 |
S | 570 | A570T | Gct | Act | 3 | 3 | B.1.2 | 0.000026 |
S | 570 | A570D | gCt | gAt | 3 | 3 | B.1.206 | 0.002447 |
S | 570 | A570D | gCt | gAt | 3 | 3 | B.1.214.2 | 0.001799 |
S | 570 | A570D | gCt | gAt | 3 | 3 | B.1.311 | 0.000824 |
S | 570 | A570D | gCt | gAt | 3 | 3 | B.1.351.5 | 0.001799 |
S | 570 | A570V | gCt | gTt | 3 | 3 | B.1.375 | 0.002459 |
S | 570 | A570D | gCt | gAt | 3 | 3 | B.1.462 | 0.021739 |
S | 570 | A570S | Gct | Tct | 3 | 3 | B.1.466.2 | 0.001174 |
S | 570 | A570S | Gct | Tct | 3 | 3 | B.1.470 | 0.004213 |
S | 570 | A570D | gCt | gAt | 3 | 3 | B.1.533 | 0.028846 |
S | 570 | A570S | Gct | Tct | 3 | 3 | B.1.561 | 0.001191 |
S | 570 | A570D | gCt | gAt | 3 | 3 | B.1.580 | 0.012195 |
S | 570 | A570D | gCt | gAt | 3 | 3 | B.1.582 | 0.001472 |
S | 570 | A570D | gCt | gAt | 3 | 3 | B.1.599 | 0.010949 |
S | 570 | A570A | gcT | gcC | 2 | 3 | B.1.617.1 | 0.000258 |
S | 570 | A570A | gcT | gcG | 1 | 3 | B.1.617.1 | 0.000129 |
S | 570 | A570del | GCT | --- | 3 | 3 | B.1.617.2 | 0.000011 |
S | 570 | A570D | gCt | gAt | 3 | 3 | B.1.627 | 0.006061 |
S | 570 | A570D | gCt | gAt | 3 | 3 | B.1.633 | 0.125 |
S | 570 | A570S | Gct | Tct | 3 | 3 | D.2 | 0.000225 |
S | 570 | A570S | Gct | Tct | 2 | 2 | A.2.5 | 0.000998 |
S | 570 | A570del1 | gCt | g-t | 2 | 2 | All | 0 |
S | 570 | A570R | GCT | AGA | 2 | 2 | All | 0 |
S | 570 | A570V | gCt | gTt | 2 | 2 | AY.102 | 0.000053 |
S | 570 | A570S | Gct | Tct | 2 | 2 | AY.110 | 0.000225 |
S | 570 | A570D | gCt | gAt | 2 | 2 | AY.113 | 0.000285 |
S | 570 | A570S | Gct | Tct | 2 | 2 | AY.116 | 0.000574 |
S | 570 | A570S | Gct | Tct | 2 | 2 | AY.12 | 0.000632 |
S | 570 | A570T | Gct | Act | 2 | 2 | AY.120 | 0.000074 |
S | 570 | A570S | Gct | Tct | 2 | 2 | AY.120.1 | 0.000642 |
S | 570 | A570S | Gct | Tct | 2 | 2 | AY.121 | 0.000271 |
S | 570 | A570S | Gct | Tct | 2 | 2 | AY.2 | 0.000712 |
S | 570 | A570D | gCt | gAt | 2 | 2 | AY.2 | 0.000712 |
S | 570 | A570S | Gct | Tct | 2 | 2 | AY.20 | 0.000078 |
S | 570 | A570D | gCt | gAt | 2 | 2 | AY.24 | 0.000862 |
S | 570 | A570S | Gct | Tct | 2 | 2 | AY.29 | 0.000032 |
S | 570 | A570V | gCt | gTt | 2 | 2 | AY.3 | 0.00002 |
S | 570 | A570D | gCt | gAt | 2 | 2 | AY.33 | 0.000134 |
S | 570 | A570S | Gct | Tct | 2 | 2 | AY.34 | 0.000194 |
S | 570 | A570T | Gct | Act | 2 | 2 | AY.4.2 | 0.000043 |
S | 570 | A570S | Gct | Tct | 2 | 2 | AY.4.2 | 0.000043 |
S | 570 | A570T | Gct | Act | 2 | 2 | AY.44 | 0.000012 |
S | 570 | A570G | gCt | gGt | 2 | 2 | AY.44 | 0.000012 |
S | 570 | A570D | gCt | gAt | 2 | 2 | AY.45 | 0.000243 |
S | 570 | A570V | gCt | gTt | 2 | 2 | AY.46 | 0.000208 |
S | 570 | A570S | Gct | Tct | 2 | 2 | AY.46 | 0.000208 |
S | 570 | A570V | gCt | gTt | 2 | 2 | AY.5 | 0.000041 |
S | 570 | A570D | gCt | gAt | 2 | 2 | AY.5 | 0.000041 |
S | 570 | A570S | Gct | Tct | 2 | 2 | AY.5.3 | 0.000675 |
S | 570 | A570D | gCt | gAt | 2 | 2 | AY.59 | 0.001059 |
S | 570 | A570A | gcT | gcG | 2 | 2 | AY.6 | 0.000082 |
S | 570 | A570A | gcT | gcA | 2 | 2 | AY.61 | 0.00021 |
S | 570 | A570D | gCt | gAt | 2 | 2 | AY.62 | 0.000871 |
S | 570 | A570V | gCt | gTt | 2 | 2 | AY.7 | 0.000392 |
S | 570 | A570T | Gct | Act | 2 | 2 | AY.70 | 0.000417 |
S | 570 | A570D | gCt | gAt | 2 | 2 | AY.75.1 | 0.000361 |
S | 570 | A570V | gCt | gTt | 2 | 2 | AY.75.1 | 0.000361 |
S | 570 | A570D | gCt | gAt | 2 | 2 | AY.9.1 | 0.000167 |
S | 570 | A570V | gCt | gTt | 1 | 2 | AY.9.2 | 0.000037 |
S | 570 | A570V | gCT | gTC | 1 | 2 | AY.9.2 | 0.000037 |
S | 570 | A570S | Gct | Tct | 2 | 2 | AY.91 | 0.001461 |
S | 570 | A570D | gCt | gAt | 2 | 2 | AY.95 | 0.001522 |
S | 570 | A570S | Gct | Tct | 2 | 2 | AY.98 | 0.000158 |
S | 570 | A570T | Gct | Act | 2 | 2 | B.1 | 0.000018 |
S | 570 | A570D | gCt | gAt | 2 | 2 | B.1.1.148 | 0.017544 |
S | 570 | A570D | gCt | gAt | 2 | 2 | B.1.1.207 | 0.002364 |
S | 570 | A570D | gCt | gAt | 2 | 2 | B.1.1.216 | 0.001781 |
S | 570 | A570V | gCt | gTt | 2 | 2 | B.1.1.28 | 0.000622 |
S | 570 | A570D | gCt | gAt | 2 | 2 | B.1.1.291 | 0.001485 |
S | 570 | A570D | gCt | gAt | 2 | 2 | B.1.1.315 | 0.016949 |
S | 570 | A570D | gCt | gAt | 2 | 2 | B.1.1.370 | 0.025316 |
S | 570 | A570D | gCt | gAt | 2 | 2 | B.1.1.374 | 0.004751 |
S | 570 | A570del | GCT | --- | 2 | 2 | B.1.1.7 | 0.000002 |
S | 570 | A570D | gCt | gAt | 2 | 2 | B.1.1.99 | 0.047619 |
S | 570 | A570D | gCt | gAt | 2 | 2 | B.1.160.16 | 0.001859 |
S | 570 | A570D | gCt | gAt | 2 | 2 | B.1.170 | 0.008621 |
S | 570 | A570T | Gct | Act | 2 | 2 | B.1.177 | 0.000026 |
S | 570 | A570V | gCt | gTt | 2 | 2 | B.1.177.15 | 0.001262 |
S | 570 | A570V | gCt | gTt | 2 | 2 | B.1.177.21 | 0.000153 |
S | 570 | A570D | gCt | gAt | 2 | 2 | B.1.177.44 | 0.001038 |
S | 570 | A570S | Gct | Tct | 2 | 2 | B.1.239 | 0.002442 |
S | 570 | A570V | gCt | gTt | 2 | 2 | B.1.240 | 0.000431 |
S | 570 | A570V | gCt | gTt | 2 | 2 | B.1.243 | 0.000139 |
S | 570 | A570T | Gct | Act | 2 | 2 | B.1.258 | 0.000133 |
S | 570 | A570A | gcT | gcG | 1 | 2 | B.1.258 | 0.000067 |
S | 570 | A570A | gcT | gcC | 1 | 2 | B.1.258 | 0.000067 |
S | 570 | A570S | Gct | Tct | 2 | 2 | B.1.351.2 | 0.000605 |
S | 570 | A570V | gCt | gTt | 2 | 2 | B.1.351.5 | 0.001199 |
S | 570 | A570D | gCt | gAt | 2 | 2 | B.1.36 | 0.000292 |
S | 570 | A570D | gCt | gAt | 2 | 2 | B.1.36.10 | 0.009569 |
S | 570 | A570A | gcT | gcA | 2 | 2 | B.1.362.2 | 0.009434 |
S | 570 | A570S | Gct | Tct | 2 | 2 | B.1.367 | 0.001585 |
S | 570 | A570V | gCt | gTt | 2 | 2 | B.1.369 | 0.00057 |
S | 570 | A570S | Gct | Tct | 2 | 2 | B.1.369 | 0.00057 |
S | 570 | A570D | gCt | gAt | 2 | 2 | B.1.396 | 0.001411 |
S | 570 | A570D | gCt | gAt | 2 | 2 | B.1.397 | 0.009709 |
S | 570 | A570V | gCt | gTt | 2 | 2 | B.1.416 | 0.002538 |
S | 570 | A570V | gCt | gTt | 2 | 2 | B.1.427 | 0.000101 |
S | 570 | A570V | gCt | gTt | 2 | 2 | B.1.429 | 0.000047 |
S | 570 | A570D | gCt | gAt | 2 | 2 | B.1.524 | 0.002813 |
S | 570 | A570V | gCt | gTt | 2 | 2 | B.1.541 | 0.00885 |
S | 570 | A570D | gCt | gAt | 2 | 2 | B.1.565 | 0.001621 |
S | 570 | A570V | gCt | gTt | 2 | 2 | B.1.576 | 0.001813 |
S | 570 | A570D | gCt | gAt | 2 | 2 | B.1.577 | 0.001375 |
S | 570 | A570S | Gct | Tct | 2 | 2 | B.1.596 | 0.000174 |
S | 570 | A570S | Gct | Tct | 2 | 2 | B.1.599 | 0.007299 |
S | 570 | A570S | Gct | Tct | 2 | 2 | B.1.617.1 | 0.000258 |
S | 570 | A570D | gCt | gAt | 2 | 2 | B.1.617.1 | 0.000258 |
S | 570 | A570D | gCt | gAt | 2 | 2 | B.1.619 | 0.001742 |
S | 570 | A570D | gCt | gAt | 2 | 2 | B.1.620 | 0.001892 |
S | 570 | A570D | gCt | gAt | 2 | 2 | B.1.621 | 0.000177 |
S | 570 | A570V | gCt | gTt | 2 | 2 | B.1.628 | 0.000705 |
S | 570 | A570D | gCt | gAt | 2 | 2 | B.1.636 | 0.013423 |
S | 570 | A570S | Gct | Tct | 2 | 2 | C.1 | 0.004785 |
S | 570 | A570D | gCt | gAt | 2 | 2 | C.35 | 0.001548 |
S | 570 | A570S | Gct | Tct | 2 | 2 | N.6 | 0.014184 |
S | 570 | A570D | gCt | gAt | 2 | 2 | P.1.13 | 0.001797 |
S | 570 | A570D | gCt | gAt | 2 | 2 | P.1.7 | 0.000639 |
S | 570 | A570S | Gct | Tct | 2 | 2 | P.7 | 0.008734 |
S | 570 | A570D | gCt | gAt | 2 | 2 | R.1 | 0.00018 |
S | 570 | A570D | gCt | gAt | 1 | 1 | A.2.5.2 | 0.001572 |
S | 570 | A570D | gCt | gAt | 1 | 1 | A.27 | 0.001656 |
S | 570 | A570V | gCt | gTt | 1 | 1 | AE.1 | 0.011364 |
S | 570 | A570D | gCt | gAt | 1 | 1 | AJ.1 | 0.045455 |
S | 570 | A570E | gCT | gAA | 1 | 1 | All | 0 |
S | 570 | A570N | GCt | AAt | 1 | 1 | All | 0 |
S | 570 | A570V | gCt | gTt | 1 | 1 | AU.3 | 0.00211 |
S | 570 | A570T | Gct | Act | 1 | 1 | AY.102 | 0.000027 |
S | 570 | A570V | gCt | gTt | 1 | 1 | AY.106 | 0.000335 |
S | 570 | A570S | Gct | Tct | 1 | 1 | AY.106 | 0.000335 |
S | 570 | A570A | gcT | gcC | 1 | 1 | AY.106 | 0.000335 |
S | 570 | A570S | Gct | Tct | 1 | 1 | AY.109 | 0.00074 |
S | 570 | A570V | gCt | gTt | 1 | 1 | AY.11 | 0.001339 |
S | 570 | A570D | gCt | gAt | 1 | 1 | AY.111 | 0.000183 |
S | 570 | A570V | gCt | gTt | 1 | 1 | AY.113 | 0.000142 |
S | 570 | A570S | Gct | Tct | 1 | 1 | AY.114 | 0.000231 |
S | 570 | A570T | Gct | Act | 1 | 1 | AY.117 | 0.000085 |
S | 570 | A570S | Gct | Tct | 1 | 1 | AY.117 | 0.000085 |
S | 570 | A570D | gCt | gAt | 1 | 1 | AY.117 | 0.000085 |
S | 570 | A570del1 | gCt | g-t | 1 | 1 | AY.117 | 0.000085 |
S | 570 | A570V | gCt | gTt | 1 | 1 | AY.119 | 0.000035 |
S | 570 | A570D | gCt | gAt | 1 | 1 | AY.119 | 0.000035 |
S | 570 | A570A | gcT | gcC | 1 | 1 | AY.119 | 0.000035 |
S | 570 | A570V | gCt | gTt | 1 | 1 | AY.121 | 0.000135 |
S | 570 | A570D | gCt | gAt | 1 | 1 | AY.121 | 0.000135 |
S | 570 | A570A | gcT | gcA | 1 | 1 | AY.14 | 0.000088 |
S | 570 | A570D | gCt | gAt | 1 | 1 | AY.16.1 | 0.00047 |
S | 570 | A570A | gcT | gcC | 1 | 1 | AY.20 | 0.000039 |
S | 570 | A570D | gCt | gAt | 1 | 1 | AY.25 | 0.000006 |
S | 570 | A570del | GCT | --- | 1 | 1 | AY.25 | 0.000006 |
S | 570 | A570S | Gct | Tct | 1 | 1 | AY.3.1 | 0.000085 |
S | 570 | A570V | gCt | gTt | 1 | 1 | AY.3.1 | 0.000085 |
S | 570 | A570V | gCt | gTt | 1 | 1 | AY.32 | 0.000532 |
S | 570 | A570S | Gct | Tct | 1 | 1 | AY.32 | 0.000532 |
S | 570 | A570T | Gct | Act | 1 | 1 | AY.33 | 0.000067 |
S | 570 | A570T | Gct | Act | 1 | 1 | AY.34 | 0.000097 |
S | 570 | A570D | gCt | gAt | 1 | 1 | AY.34 | 0.000097 |
S | 570 | A570D | gCt | gAt | 1 | 1 | AY.34.1 | 0.00051 |
S | 570 | A570del | GCT | --- | 1 | 1 | AY.38 | 0.000499 |
S | 570 | A570T | Gct | Act | 1 | 1 | AY.39 | 0.000025 |
S | 570 | A570del | GCT | --- | 1 | 1 | AY.4 | 0.000002 |
S | 570 | A570D | gCt | gAt | 1 | 1 | AY.4.3 | 0.000842 |
S | 570 | A570S | Gct | Tct | 1 | 1 | AY.4.3 | 0.000842 |
S | 570 | A570A | gcT | gcC | 1 | 1 | AY.4.5 | 0.000107 |
S | 570 | A570V | gCt | gTt | 1 | 1 | AY.4.5 | 0.000107 |
S | 570 | A570A | gcT | gcA | 1 | 1 | AY.42 | 0.00004 |
S | 570 | A570del | GCT | --- | 1 | 1 | AY.43 | 0.000004 |
S | 570 | A570del | GCT | --- | 1 | 1 | AY.44 | 0.000006 |
S | 570 | A570A | gcT | gcC | 1 | 1 | AY.46 | 0.000104 |
S | 570 | A570S | Gct | Tct | 1 | 1 | AY.46.2 | 0.000635 |
S | 570 | A570V | gCt | gTt | 1 | 1 | AY.46.4 | 0.000165 |
S | 570 | A570S | Gct | Tct | 1 | 1 | AY.46.6 | 0.000072 |
S | 570 | A570S | Gct | Tct | 1 | 1 | AY.47 | 0.000031 |
S | 570 | A570T | Gct | Act | 1 | 1 | AY.47 | 0.000031 |
S | 570 | A570A | gcT | gcC | 1 | 1 | AY.5 | 0.000021 |
S | 570 | A570V | gCt | gTt | 1 | 1 | AY.5.3 | 0.000337 |
S | 570 | A570D | gCt | gAt | 1 | 1 | AY.55 | 0.000917 |
S | 570 | A570T | Gct | Act | 1 | 1 | AY.55 | 0.000917 |
S | 570 | A570A | gcT | gcC | 1 | 1 | AY.59 | 0.00053 |
S | 570 | A570S | Gct | Tct | 1 | 1 | AY.6 | 0.000041 |
S | 570 | A570V | gCt | gTt | 1 | 1 | AY.61 | 0.000105 |
S | 570 | A570S | Gct | Tct | 1 | 1 | AY.61 | 0.000105 |
S | 570 | A570T | Gct | Act | 1 | 1 | AY.67 | 0.000464 |
S | 570 | A570V | gCt | gTt | 1 | 1 | AY.68 | 0.000274 |
S | 570 | A570S | Gct | Tct | 1 | 1 | AY.7.1 | 0.000113 |
S | 570 | A570S | Gct | Tct | 1 | 1 | AY.71 | 0.000475 |
S | 570 | A570S | Gct | Tct | 1 | 1 | AY.73 | 0.000665 |
S | 570 | A570S | Gct | Tct | 1 | 1 | AY.74 | 0.000116 |
S | 570 | A570D | gCt | gAt | 1 | 1 | AY.75 | 0.000056 |
S | 570 | A570V | gCt | gTt | 1 | 1 | AY.78 | 0.001541 |
S | 570 | A570S | Gct | Tct | 1 | 1 | AY.82 | 0.001357 |
S | 570 | A570D | gCt | gAt | 1 | 1 | AY.84 | 0.000437 |
S | 570 | A570D | gCt | gAt | 1 | 1 | AY.85 | 0.000427 |
S | 570 | A570A | gcT | gcC | 1 | 1 | AY.85 | 0.000427 |
S | 570 | A570V | gCt | gTt | 1 | 1 | AY.9 | 0.000068 |
S | 570 | A570A | gcT | gcC | 1 | 1 | AY.93 | 0.000273 |
S | 570 | A570S | Gct | Tct | 1 | 1 | AY.93 | 0.000273 |
S | 570 | A570S | Gct | Tct | 1 | 1 | AY.95 | 0.000761 |
S | 570 | A570S | Gct | Tct | 1 | 1 | AY.97 | 0.001701 |
S | 570 | A570S | Gct | Tct | 1 | 1 | AY.98.1 | 0.000048 |
S | 570 | A570V | gCt | gTt | 1 | 1 | AY.98.1 | 0.000048 |
S | 570 | A570D | gCt | gAt | 1 | 1 | AY.99 | 0.001049 |
S | 570 | A570T | Gct | Act | 1 | 1 | AY.99.2 | 0.000092 |
S | 570 | A570S | Gct | Tct | 1 | 1 | AZ.2 | 0.000821 |
S | 570 | A570D | gCt | gAt | 1 | 1 | AZ.3 | 0.00152 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B | 0.000128 |
S | 570 | A570S | Gct | Tct | 1 | 1 | B | 0.000128 |
S | 570 | A570del | GCT | --- | 1 | 1 | B.1 | 0.000009 |
S | 570 | A570P | Gct | Cct | 1 | 1 | B.1 | 0.000009 |
S | 570 | A570R | GCT | AGA | 1 | 1 | B.1 | 0.000009 |
S | 570 | A570Y | GCt | TAt | 1 | 1 | B.1 | 0.000009 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.1.1 | 0.000327 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.1.135 | 0.004695 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.1.141 | 0.002012 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.1.171 | 0.003676 |
S | 570 | A570S | Gct | Tct | 1 | 1 | B.1.1.192 | 0.002309 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.1.214 | 0.000055 |
S | 570 | A570S | Gct | Tct | 1 | 1 | B.1.1.214 | 0.000055 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.1.220 | 0.001859 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.1.222 | 0.000204 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.1.231 | 0.003096 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.1.236 | 0.006897 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.1.237 | 0.005405 |
S | 570 | A570S | Gct | Tct | 1 | 1 | B.1.1.241 | 0.00207 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.1.25 | 0.000569 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.1.265 | 0.003155 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.1.269 | 0.001353 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.1.269 | 0.001353 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.1.27 | 0.00565 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.1.277 | 0.000759 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.1.299 | 0.012195 |
S | 570 | A570R | GCT | AGA | 1 | 1 | B.1.1.306 | 0.000438 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.1.306 | 0.000438 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.1.307 | 0.002532 |
S | 570 | A570A | gcT | gcC | 1 | 1 | B.1.1.311 | 0.000358 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.1.34 | 0.013158 |
S | 570 | A570S | Gct | Tct | 1 | 1 | B.1.1.34 | 0.013158 |
S | 570 | A570S | Gct | Tct | 1 | 1 | B.1.1.348 | 0.000796 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.1.354 | 0.004386 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.1.365 | 0.005587 |
S | 570 | A570S | Gct | Tct | 1 | 1 | B.1.1.372 | 0.000689 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.1.372 | 0.000689 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.1.389 | 0.006061 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.1.417 | 0.002703 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.1.417 | 0.002703 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.1.432 | 0.001266 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.1.462 | 0.008621 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.1.464 | 0.001473 |
S | 570 | A570A | gcT | gcA | 1 | 1 | B.1.1.519 | 0.00004 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.1.523 | 0.001563 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.1.524 | 0.020833 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.1.526 | 0.003546 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.1.54 | 0.003021 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.1.55 | 0.012987 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.1.56 | 0.017857 |
S | 570 | A570N | GCt | AAt | 1 | 1 | B.1.1.7 | 0.000001 |
S | 570 | A570del1 | gCt | g-t | 1 | 1 | B.1.1.7 | 0.000001 |
S | 570 | A570E | gCT | gAA | 1 | 1 | B.1.1.7 | 0.000001 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.1.83 | 0.00271 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.1.89 | 0.006061 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.131 | 0.008772 |
S | 570 | A570S | Gct | Tct | 1 | 1 | B.1.134 | 0.005464 |
S | 570 | A570S | Gct | Tct | 1 | 1 | B.1.139 | 0.000733 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.160 | 0.000031 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.160.14 | 0.002119 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.160.7 | 0.002079 |
S | 570 | A570A | gcT | gcC | 1 | 1 | B.1.160.7 | 0.002079 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.177.12 | 0.000152 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.177.15 | 0.000631 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.177.16 | 0.000664 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.177.19 | 0.001431 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.177.33 | 0.001645 |
S | 570 | A570S | Gct | Tct | 1 | 1 | B.1.177.4 | 0.000211 |
S | 570 | A570P | Gct | Cct | 1 | 1 | B.1.177.4 | 0.000211 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.177.51 | 0.004566 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.177.54 | 0.000606 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.177.56 | 0.000668 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.177.58 | 0.001332 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.177.6 | 0.000977 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.177.60 | 0.000218 |
S | 570 | A570S | Gct | Tct | 1 | 1 | B.1.177.7 | 0.000165 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.177.7 | 0.000165 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.177.75 | 0.001041 |
S | 570 | A570A | gcT | gcC | 1 | 1 | B.1.177.86 | 0.000183 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.210 | 0.002132 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.214 | 0.003663 |
S | 570 | A570A | gcT | gcG | 1 | 1 | B.1.222 | 0.001692 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.234 | 0.000132 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.234 | 0.000132 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.237 | 0.004975 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.241 | 0.000812 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.241 | 0.000812 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.242 | 0.018868 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.243 | 0.00007 |
S | 570 | A570S | Gct | Tct | 1 | 1 | B.1.258 | 0.000067 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.258.11 | 0.000396 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.258.11 | 0.000396 |
S | 570 | A570S | Gct | Tct | 1 | 1 | B.1.258.12 | 0.007874 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.258.14 | 0.00098 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.258.17 | 0.000104 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.260 | 0.003344 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.301 | 0.005917 |
S | 570 | A570S | Gct | Tct | 1 | 1 | B.1.311 | 0.000275 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.336 | 0.002439 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.344 | 0.008197 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.349 | 0.000715 |
S | 570 | A570G | gCt | gGt | 1 | 1 | B.1.351 | 0.00003 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.36.17 | 0.000494 |
S | 570 | A570S | Gct | Tct | 1 | 1 | B.1.36.29 | 0.000517 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.36.36 | 0.000602 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.362 | 0.001541 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.369 | 0.000285 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.399 | 0.001934 |
S | 570 | A570P | Gct | Cct | 1 | 1 | B.1.399 | 0.001934 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.400 | 0.000429 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.415.1 | 0.007576 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.416.1 | 0.001563 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.417 | 0.028571 |
S | 570 | A570A | gcT | gcA | 1 | 1 | B.1.425 | 0.002994 |
S | 570 | A570T | Gct | Act | 1 | 1 | B.1.427 | 0.00005 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.428 | 0.00102 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.452 | 0.013699 |
S | 570 | A570S | Gct | Tct | 1 | 1 | B.1.456 | 0.003268 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.466.2 | 0.000391 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.473 | 0.019231 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.517 | 0.000427 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.521 | 0.004975 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.521 | 0.004975 |
S | 570 | A570S | Gct | Tct | 1 | 1 | B.1.526 | 0.000024 |
S | 570 | A570P | Gct | Cct | 1 | 1 | B.1.526 | 0.000024 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.530 | 0.007143 |
S | 570 | A570A | gcT | gcA | 1 | 1 | B.1.538 | 0.008065 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.544 | 0.006024 |
S | 570 | A570T | Gct | Act | 1 | 1 | B.1.561 | 0.000397 |
S | 570 | A570A | gcT | gcC | 1 | 1 | B.1.564 | 0.000426 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.567 | 0.003333 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.574 | 0.002151 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.574 | 0.002151 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.575 | 0.000303 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.580 | 0.004065 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.588 | 0.00091 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.590 | 0.004545 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.595 | 0.000261 |
S | 570 | A570A | gcT | gcA | 1 | 1 | B.1.596 | 0.000087 |
S | 570 | A570T | Gct | Act | 1 | 1 | B.1.596 | 0.000087 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.606 | 0.006024 |
S | 570 | A570del | GCT | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 570 | A570T | Gct | Act | 1 | 1 | B.1.621 | 0.000089 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.621.1 | 0.000506 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.625 | 0.002353 |
S | 570 | A570S | Gct | Tct | 1 | 1 | B.1.628 | 0.000352 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.631 | 0.003367 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.632 | 0.006711 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.634 | 0.003425 |
S | 570 | A570S | Gct | Tct | 1 | 1 | B.1.637 | 0.000073 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.78 | 0.008547 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.1.8 | 0.001972 |
S | 570 | A570D | gCt | gAt | 1 | 1 | B.1.94 | 0.027027 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.40 | 0.000364 |
S | 570 | A570V | gCt | gTt | 1 | 1 | B.55 | 0.00295 |
S | 570 | A570S | Gct | Tct | 1 | 1 | C.16 | 0.00106 |
S | 570 | A570V | gCt | gTt | 1 | 1 | C.35 | 0.000774 |
S | 570 | A570D | gCt | gAt | 1 | 1 | C.36 | 0.000911 |
S | 570 | A570D | gCt | gAt | 1 | 1 | C.38 | 0.008065 |
S | 570 | A570D | gCt | gAt | 1 | 1 | C.39 | 0.018868 |
S | 570 | A570D | gCt | gAt | 1 | 1 | D.2 | 0.000075 |
S | 570 | A570V | gCt | gTt | 1 | 1 | D.2 | 0.000075 |
S | 570 | A570A | gcT | gcC | 1 | 1 | D.2 | 0.000075 |
S | 570 | A570T | Gct | Act | 1 | 1 | P.1 | 0.000016 |
S | 570 | A570A | gcT | gcC | 1 | 1 | P.1 | 0.000016 |
S | 570 | A570D | gCt | gAt | 1 | 1 | P.1.10 | 0.000269 |
S | 570 | A570V | gCt | gTt | 1 | 1 | P.1.12 | 0.000484 |
S | 570 | A570A | gcT | gcC | 1 | 1 | P.1.14 | 0.000048 |
S | 570 | A570V | gCt | gTt | 1 | 1 | P.1.14 | 0.000048 |
S | 570 | A570S | Gct | Tct | 1 | 1 | P.1.14 | 0.000048 |
S | 570 | A570V | gCt | gTt | 1 | 1 | P.1.17 | 0.000162 |
S | 570 | A570V | gCt | gTt | 1 | 1 | Q.1 | 0.000126 |
S | 570 | A570S | Gct | Tct | 1 | 1 | R.1 | 0.00009 |
S | 570 | A570D | gCt | gAt | 1 | 1 | W.1 | 0.008696 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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