CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 557

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S557K557KsynaaAaaG151151123231-23233
S557K557del1delAaa-aa35330.94285723231-23233
S557K557del1delaaAaa-3520.057142923231-23233
S557K557deldelAAA---2424123231-23233
S557K557NnonsynaaAaaC1060.623231-23233
S557K557NnonsynaaAaaT1040.423231-23233
S557K557TnonsynaAaaCa55123231-23233
S557K557EnonsynAaaGaa44123231-23233
S557K557del2delAAa--a430.7523231-23233
S557K557del2delaAAa--410.2523231-23233
S557K557XnonsynAaaTaa33123231-23233
S557K557QnonsynAaaCaa33123231-23233
S557K557InonsynaAaaTa33123231-23233
S557K557RnonsynaAaaGa11123231-23233

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S557K557KaaAaaG151151All0.000029
S557K557KaaAaaG7373B.1.1.3750.869048
S557K557del1Aaa-aa3335All0.000006
S557K557del1aaAaa-235All0
S557K557delAAA---2424All0.000005
S557K557KaaAaaG1111B.1.1.70.00001
S557K557KaaAaaG1111B.1.3510.000327
S557K557NaaAaaC610All0.000001
S557K557NaaAaaT410All0.000001
S557K557del1Aaa-aa67B.1.1.70.000005
S557K557del1aaAaa-17B.1.1.70.000001
S557K557KaaAaaG77C.1.10.538462
S557K557delAAA---66AY.250.000036
S557K557TaAaaCa55All0.000001
S557K557KaaAaaG55AY.1030.000031
S557K557del1Aaa-aa440.222222
S557K557EAaaGaa44All0.000001
S557K557del2AAa--a34All0.000001
S557K557del2aAAa--14All0
S557K557IaAaaTa33All0.000001
S557K557XAaaTaa33All0.000001
S557K557QAaaCaa33All0.000001
S557K557KaaAaaG33AY.230.000209
S557K557del1Aaa-aa33AY.440.000018
S557K557del1Aaa-aa33B.10.000027
S557K557NaaAaaC33B.1.1.70.000003
S557K557KaaAaaG33B.1.177.790.007026
S557K557KaaAaaG22AY.30.00002
S557K557delAAA---22AY.430.000009
S557K557KaaAaaG22AY.440.000012
S557K557KaaAaaG22AY.660.002139
S557K557KaaAaaG22AY.920.000575
S557K557KaaAaaG22B.10.000018
S557K557KaaAaaG22B.1.1.3720.001377
S557K557KaaAaaG22B.1.1460.008475
S557K557XAaaTaa22B.1.20.000018
S557K557del1Aaa-aa22B.1.20.000018
S557K557KaaAaaG22B.1.2580.000133
S557K557KaaAaaG22C.60.074074
S557K557KaaAaaG22P.10.000032
S557K557del1Aaa-aa22P.1.140.000096
S557K557NaaAaaT11A.270.001656
S557K557RaAaaGa11All0
S557K557delAAA---11AY.1170.000085
S557K557del1Aaa-aa11AY.120.10.000321
S557K557KaaAaaG11AY.16.10.00047
S557K557KaaAaaG11AY.200.000039
S557K557del1aaAaa-11AY.250.000006
S557K557KaaAaaG11AY.250.000006
S557K557NaaAaaT11AY.260.000028
S557K557KaaAaaG11AY.3.10.000085
S557K557delAAA---11AY.330.000067
S557K557delAAA---11AY.350.000233
S557K557delAAA---11AY.380.000499
S557K557del1Aaa-aa11AY.390.000025
S557K557KaaAaaG11AY.39.10.00004
S557K557KaaAaaG11AY.40.000002
S557K557delAAA---11AY.40.000002
S557K557IaAaaTa11AY.40.000002
S557K557del2aAAa--11AY.4.20.000022
S557K557KaaAaaG11AY.430.000004
S557K557TaAaaCa11AY.430.000004
S557K557delAAA---11AY.440.000006
S557K557delAAA---11AY.46.40.000165
S557K557delAAA---11AY.46.60.000072
S557K557del1Aaa-aa11AY.470.000031
S557K557KaaAaaG11AY.610.000105
S557K557KaaAaaG11AY.670.000464
S557K557delAAA---11AY.750.000056
S557K557delAAA---11AY.75.10.00018
S557K557KaaAaaG11AY.75.10.00018
S557K557del1Aaa-aa11AY.790.001211
S557K557KaaAaaG11AY.9.20.000037
S557K557del1Aaa-aa11AY.950.000761
S557K557delAAA---11AY.990.001049
S557K557EAaaGaa11B.10.000009
S557K557TaAaaCa11B.10.000009
S557K557del2AAa--a11B.10.000009
S557K557del2AAa--a11B.1.10.000018
S557K557del1Aaa-aa11B.1.10.000018
S557K557KaaAaaG11B.1.1.10.000327
S557K557EAaaGaa11B.1.1.2910.000742
S557K557KaaAaaG11B.1.1.3220.008772
S557K557EAaaGaa11B.1.1.70.000001
S557K557IaAaaTa11B.1.1.70.000001
S557K557TaAaaCa11B.1.1.70.000001
S557K557delAAA---11B.1.1.70.000001
S557K557RaAaaGa11B.1.1600.000031
S557K557del1Aaa-aa11B.1.1600.000031
S557K557NaaAaaC11B.1.160.120.00641
S557K557KaaAaaG11B.1.177.100.000878
S557K557del1Aaa-aa11B.1.177.530.002392
S557K557TaAaaCa11B.1.20.000009
S557K557del2AAa--a11B.1.20.000009
S557K557del1Aaa-aa11B.1.2060.000816
S557K557del1Aaa-aa11B.1.2210.000071
S557K557NaaAaaT11B.1.2210.000071
S557K557NaaAaaT11B.1.2340.000132
S557K557NaaAaaC11B.1.3500.002933
S557K557del1Aaa-aa11B.1.3510.00003
S557K557QAaaCaa11B.1.3510.00003
S557K557KaaAaaG11B.1.36.70.004
S557K557delAAA---11B.1.4150.014286
S557K557EAaaGaa11B.1.4270.00005
S557K557QAaaCaa11B.1.4290.000024
S557K557KaaAaaG11B.1.438.10.000107
S557K557IaAaaTa11B.1.438.10.000107
S557K557KaaAaaG11B.1.5240.001406
S557K557NaaAaaC11B.1.5250.000113
S557K557TaAaaCa11B.1.5640.000426
S557K557del1Aaa-aa11B.1.5800.004065
S557K557del1Aaa-aa11B.1.617.20.000004
S557K557delAAA---11B.1.617.20.000004
S557K557delAAA---11B.1.6200.000946
S557K557QAaaCaa11D.20.000075
S557K557XAaaTaa11D.20.000075
S557K557delAAA---11Q.20.000613
S557K557KaaAaaG11Q.70.001111