CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 541 | F541F | syn | ttC | ttT | 3827 | 3827 | 1 | 23183-23185 | |
S | 541 | F541L | nonsyn | Ttc | Ctc | 33 | 22 | 0.666667 | 23183-23185 | |
S | 541 | F541L | nonsyn | ttC | ttA | 33 | 9 | 0.272727 | 23183-23185 | |
S | 541 | F541L | nonsyn | ttC | ttG | 33 | 2 | 0.0606061 | 23183-23185 | |
S | 541 | F541del | del | TTC | --- | 23 | 23 | 1 | 23183-23185 | |
S | 541 | F541S | nonsyn | tTc | tCc | 3 | 3 | 1 | 23183-23185 | |
S | 541 | F541I | nonsyn | Ttc | Atc | 2 | 2 | 1 | 23183-23185 | |
S | 541 | F541X | nonsyn | tTC | tAA | 2 | 1 | 0.5 | 23183-23185 | |
S | 541 | F541X | nonsyn | tTC | tGA | 2 | 1 | 0.5 | 23183-23185 | |
S | 541 | F541Y | nonsyn | tTc | tAc | 1 | 1 | 1 | 23183-23185 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 541 | F541F | ttC | ttT | 3827 | 3827 | All | 0.000732 |
S | 541 | F541F | ttC | ttT | 1178 | 1178 | B.1.1.7 | 0.001055 |
S | 541 | F541F | ttC | ttT | 343 | 343 | B.6.6 | 0.304889 |
S | 541 | F541F | ttC | ttT | 258 | 258 | AY.4 | 0.000402 |
S | 541 | F541F | ttC | ttT | 180 | 180 | B.1.564 | 0.076661 |
S | 541 | F541F | ttC | ttT | 154 | 154 | AY.43 | 0.000682 |
S | 541 | F541F | ttC | ttT | 104 | 104 | B.1.2 | 0.000916 |
S | 541 | F541F | ttC | ttT | 96 | 96 | B.1.617.2 | 0.000361 |
S | 541 | F541F | ttC | ttT | 89 | 89 | AY.120.1 | 0.028571 |
S | 541 | F541F | ttC | ttT | 85 | 85 | B.1.160 | 0.002651 |
S | 541 | F541F | ttC | ttT | 81 | 81 | B.1.1.318 | 0.024442 |
S | 541 | F541F | ttC | ttT | 68 | 68 | B.1.1.234 | 0.819277 |
S | 541 | F541F | ttC | ttT | 60 | 60 | B.1 | 0.00055 |
S | 541 | F541F | ttC | ttT | 59 | 59 | B.1.1.230 | 0.541284 |
S | 541 | F541F | ttC | ttT | 57 | 57 | AY.103 | 0.000354 |
S | 541 | F541F | ttC | ttT | 54 | 54 | AY.25 | 0.000325 |
S | 541 | F541F | ttC | ttT | 52 | 52 | B.1.1 | 0.000943 |
S | 541 | F541F | ttC | ttT | 52 | 52 | B.1.177 | 0.000685 |
S | 541 | F541F | ttC | ttT | 46 | 46 | AY.44 | 0.00028 |
S | 541 | F541F | ttC | ttT | 39 | 39 | P.1 | 0.000614 |
S | 541 | F541F | ttC | ttT | 38 | 38 | AY.9.2 | 0.001396 |
S | 541 | F541L | Ttc | Ctc | 22 | 33 | All | 0.000004 |
S | 541 | F541L | ttC | ttA | 9 | 33 | All | 0.000002 |
S | 541 | F541L | ttC | ttG | 2 | 33 | All | 0 |
S | 541 | F541F | ttC | ttT | 28 | 28 | AY.46.4 | 0.004606 |
S | 541 | F541F | ttC | ttT | 26 | 26 | A.1 | 0.007328 |
S | 541 | F541F | ttC | ttT | 26 | 26 | AY.39.1.1 | 0.018841 |
S | 541 | F541F | ttC | ttT | 24 | 24 | AY.3 | 0.000239 |
S | 541 | F541F | ttC | ttT | 24 | 24 | AY.98 | 0.001896 |
S | 541 | F541del | TTC | --- | 23 | 23 | All | 0.000004 |
S | 541 | F541F | ttC | ttT | 20 | 20 | B.1.240 | 0.004311 |
S | 541 | F541F | ttC | ttT | 18 | 18 | C.8 | 0.080357 |
S | 541 | F541F | ttC | ttT | 17 | 17 | B.1.1.397 | 0.038288 |
S | 541 | F541F | ttC | ttT | 16 | 16 | B.1.351 | 0.000476 |
S | 541 | F541F | ttC | ttT | 16 | 16 | B.1.36.29 | 0.008277 |
S | 541 | F541F | ttC | ttT | 14 | 14 | B.1.221 | 0.000994 |
S | 541 | F541F | ttC | ttT | 13 | 13 | AY.120 | 0.000483 |
S | 541 | F541F | ttC | ttT | 13 | 13 | AY.47 | 0.000404 |
S | 541 | F541F | ttC | ttT | 13 | 13 | B.1.177.72 | 0.044068 |
S | 541 | F541F | ttC | ttT | 12 | 12 | B.1.361 | 0.015464 |
S | 541 | F541F | ttC | ttT | 12 | 12 | B.1.427 | 0.000606 |
S | 541 | F541F | ttC | ttT | 11 | 11 | AY.102 | 0.000292 |
S | 541 | F541F | ttC | ttT | 11 | 11 | AY.39 | 0.000272 |
S | 541 | F541F | ttC | ttT | 11 | 11 | P.2 | 0.002053 |
S | 541 | F541F | ttC | ttT | 10 | 10 | AY.27 | 0.000647 |
S | 541 | F541F | ttC | ttT | 10 | 10 | B.1.1.198 | 0.014684 |
S | 541 | F541F | ttC | ttT | 10 | 10 | B.1.1.214 | 0.000555 |
S | 541 | F541F | ttC | ttT | 10 | 10 | B.1.1.512 | 0.285714 |
S | 541 | F541L | Ttc | Ctc | 10 | 10 | B.1.1.7 | 0.000009 |
S | 541 | F541F | ttC | ttT | 10 | 10 | B.1.621 | 0.000885 |
S | 541 | F541F | ttC | ttT | 9 | 9 | B.1.429 | 0.000212 |
S | 541 | F541F | ttC | ttT | 8 | 8 | AY.100 | 0.000368 |
S | 541 | F541F | ttC | ttT | 8 | 8 | AY.98.1 | 0.000387 |
S | 541 | F541F | ttC | ttT | 8 | 8 | B.1.1.28 | 0.00249 |
S | 541 | F541L | Ttc | Ctc | 8 | 8 | B.1.525 | 0.000905 |
S | 541 | F541F | ttC | ttT | 8 | 8 | R.1 | 0.00072 |
S | 541 | F541F | ttC | ttT | 7 | 7 | AY.113 | 0.000997 |
S | 541 | F541F | ttC | ttT | 7 | 7 | AY.4.2 | 0.000152 |
S | 541 | F541F | ttC | ttT | 7 | 7 | B.1.596 | 0.00061 |
S | 541 | F541F | ttC | ttT | 7 | 7 | Q.3 | 0.001015 |
S | 541 | F541F | ttC | ttT | 6 | 6 | AY.54 | 0.000572 |
S | 541 | F541F | ttC | ttT | 6 | 6 | B.1.1.27 | 0.033898 |
S | 541 | F541F | ttC | ttT | 6 | 6 | B.1.36.22 | 0.007246 |
S | 541 | F541F | ttC | ttT | 6 | 6 | B.1.396 | 0.004234 |
S | 541 | F541F | ttC | ttT | 5 | 5 | AY.61 | 0.000524 |
S | 541 | F541F | ttC | ttT | 5 | 5 | B.1.1.519 | 0.000199 |
S | 541 | F541F | ttC | ttT | 5 | 5 | B.1.177.54 | 0.003032 |
S | 541 | F541F | ttC | ttT | 5 | 5 | B.1.243 | 0.000348 |
S | 541 | F541F | ttC | ttT | 5 | 5 | B.1.595 | 0.001305 |
S | 541 | F541F | ttC | ttT | 5 | 5 | C.37 | 0.00058 |
S | 541 | F541F | ttC | ttT | 5 | 5 | P.1.1 | 0.001588 |
S | 541 | F541F | ttC | ttT | 5 | 5 | P.1.15 | 0.001162 |
S | 541 | F541F | ttC | ttT | 5 | 5 | Q.4 | 0.002274 |
S | 541 | F541F | ttC | ttT | 4 | 4 | AY.20 | 0.000155 |
S | 541 | F541del | TTC | --- | 4 | 4 | AY.25 | 0.000024 |
S | 541 | F541F | ttC | ttT | 4 | 4 | AY.26 | 0.000113 |
S | 541 | F541F | ttC | ttT | 4 | 4 | AY.34 | 0.000388 |
S | 541 | F541F | ttC | ttT | 4 | 4 | AY.93 | 0.001092 |
S | 541 | F541F | ttC | ttT | 4 | 4 | B.1.1.157 | 0.003653 |
S | 541 | F541F | ttC | ttT | 4 | 4 | B.1.1.57 | 0.045977 |
S | 541 | F541F | ttC | ttT | 4 | 4 | B.1.177.86 | 0.000734 |
S | 541 | F541F | ttC | ttT | 4 | 4 | B.1.258.24 | 0.043011 |
S | 541 | F541F | ttC | ttT | 4 | 4 | B.1.628 | 0.001409 |
S | 541 | F541F | ttC | ttT | 4 | 4 | P.1.14 | 0.000191 |
S | 541 | F541S | tTc | tCc | 3 | 3 | All | 0.000001 |
S | 541 | F541F | ttC | ttT | 3 | 3 | AY.118 | 0.000188 |
S | 541 | F541F | ttC | ttT | 3 | 3 | AY.119 | 0.000106 |
S | 541 | F541F | ttC | ttT | 3 | 3 | AY.38 | 0.001498 |
S | 541 | F541F | ttC | ttT | 3 | 3 | AY.5 | 0.000062 |
S | 541 | F541F | ttC | ttT | 3 | 3 | AY.62 | 0.001307 |
S | 541 | F541F | ttC | ttT | 3 | 3 | AY.75 | 0.000168 |
S | 541 | F541L | ttC | ttA | 2 | 3 | B.1 | 0.000018 |
S | 541 | F541L | Ttc | Ctc | 1 | 3 | B.1 | 0.000009 |
S | 541 | F541F | ttC | ttT | 3 | 3 | B.1.1.284 | 0.000322 |
S | 541 | F541F | ttC | ttT | 3 | 3 | B.1.1.33 | 0.001263 |
S | 541 | F541F | ttC | ttT | 3 | 3 | B.1.1.434 | 0.001046 |
S | 541 | F541F | ttC | ttT | 3 | 3 | B.1.1.54 | 0.009063 |
S | 541 | F541F | ttC | ttT | 3 | 3 | B.1.258 | 0.0002 |
S | 541 | F541F | ttC | ttT | 3 | 3 | B.1.36 | 0.000438 |
S | 541 | F541F | ttC | ttT | 3 | 3 | B.1.466.2 | 0.001174 |
S | 541 | F541F | ttC | ttT | 3 | 3 | B.1.517 | 0.001281 |
S | 541 | F541F | ttC | ttT | 3 | 3 | B.1.526 | 0.000071 |
S | 541 | F541F | ttC | ttT | 3 | 3 | B.1.637 | 0.000219 |
S | 541 | F541F | ttC | ttT | 3 | 3 | C.16 | 0.003181 |
S | 541 | F541F | ttC | ttT | 2 | 2 | A | 0.000774 |
S | 541 | F541F | ttC | ttT | 2 | 2 | A.2.5 | 0.000998 |
S | 541 | F541F | ttC | ttT | 2 | 2 | A.30 | 0.285714 |
S | 541 | F541I | Ttc | Atc | 2 | 2 | All | 0 |
S | 541 | F541X | tTC | tGA | 1 | 2 | All | 0 |
S | 541 | F541X | tTC | tAA | 1 | 2 | All | 0 |
S | 541 | F541F | ttC | ttT | 2 | 2 | AY.108 | 0.002205 |
S | 541 | F541F | ttC | ttT | 2 | 2 | AY.12 | 0.000632 |
S | 541 | F541F | ttC | ttT | 2 | 2 | AY.24 | 0.000862 |
S | 541 | F541F | ttC | ttT | 2 | 2 | AY.3.1 | 0.000171 |
S | 541 | F541F | ttC | ttT | 2 | 2 | AY.33 | 0.000134 |
S | 541 | F541del | TTC | --- | 2 | 2 | AY.33 | 0.000134 |
S | 541 | F541F | ttC | ttT | 2 | 2 | AY.36 | 0.000296 |
S | 541 | F541F | ttC | ttT | 2 | 2 | AY.42 | 0.00008 |
S | 541 | F541del | TTC | --- | 2 | 2 | AY.43 | 0.000009 |
S | 541 | F541F | ttC | ttT | 2 | 2 | AY.56 | 0.00321 |
S | 541 | F541F | ttC | ttT | 2 | 2 | AY.67 | 0.000929 |
S | 541 | F541F | ttC | ttT | 2 | 2 | AY.7.1 | 0.000225 |
S | 541 | F541F | ttC | ttT | 2 | 2 | AY.90 | 0.001369 |
S | 541 | F541F | ttC | ttT | 2 | 2 | B | 0.000256 |
S | 541 | F541F | ttC | ttT | 2 | 2 | B.1.1.216 | 0.001781 |
S | 541 | F541F | ttC | ttT | 2 | 2 | B.1.1.317 | 0.000823 |
S | 541 | F541F | ttC | ttT | 2 | 2 | B.1.1.409 | 0.005666 |
S | 541 | F541F | ttC | ttT | 2 | 2 | B.1.1.526 | 0.007092 |
S | 541 | F541del | TTC | --- | 2 | 2 | B.1.1.7 | 0.000002 |
S | 541 | F541F | ttC | ttT | 2 | 2 | B.1.232 | 0.001075 |
S | 541 | F541F | ttC | ttT | 2 | 2 | B.1.381 | 0.015625 |
S | 541 | F541F | ttC | ttT | 2 | 2 | B.1.398 | 0.005952 |
S | 541 | F541F | ttC | ttT | 2 | 2 | B.1.438.1 | 0.000215 |
S | 541 | F541F | ttC | ttT | 2 | 2 | B.1.582 | 0.000981 |
S | 541 | F541del | TTC | --- | 2 | 2 | B.1.617.2 | 0.000008 |
S | 541 | F541F | ttC | ttT | 2 | 2 | B.23 | 0.005848 |
S | 541 | F541F | ttC | ttT | 2 | 2 | B.6 | 0.00182 |
S | 541 | F541F | ttC | ttT | 2 | 2 | C.36 | 0.001821 |
S | 541 | F541F | ttC | ttT | 2 | 2 | P.1.7 | 0.000639 |
S | 541 | F541F | ttC | ttT | 2 | 2 | P.3 | 0.00319 |
S | 541 | F541F | ttC | ttT | 2 | 2 | Q.8 | 0.00033 |
S | 541 | F541L | ttC | ttA | 1 | 1 | A | 0.000387 |
S | 541 | F541F | ttC | ttT | 1 | 1 | AD.2 | 0.000219 |
S | 541 | F541F | ttC | ttT | 1 | 1 | AE.5 | 0.018519 |
S | 541 | F541Y | tTc | tAc | 1 | 1 | All | 0 |
S | 541 | F541L | ttC | ttA | 1 | 1 | AY.103 | 0.000006 |
S | 541 | F541F | ttC | ttT | 1 | 1 | AY.109 | 0.00074 |
S | 541 | F541F | ttC | ttT | 1 | 1 | AY.117 | 0.000085 |
S | 541 | F541F | ttC | ttT | 1 | 1 | AY.120.2.1 | 0.000498 |
S | 541 | F541L | Ttc | Ctc | 1 | 1 | AY.121 | 0.000135 |
S | 541 | F541F | ttC | ttT | 1 | 1 | AY.121 | 0.000135 |
S | 541 | F541F | ttC | ttT | 1 | 1 | AY.15 | 0.002222 |
S | 541 | F541F | ttC | ttT | 1 | 1 | AY.23 | 0.00007 |
S | 541 | F541L | ttC | ttG | 1 | 1 | AY.23 | 0.00007 |
S | 541 | F541F | ttC | ttT | 1 | 1 | AY.29 | 0.000016 |
S | 541 | F541F | ttC | ttT | 1 | 1 | AY.30 | 0.000396 |
S | 541 | F541F | ttC | ttT | 1 | 1 | AY.35 | 0.000233 |
S | 541 | F541del | TTC | --- | 1 | 1 | AY.38 | 0.000499 |
S | 541 | F541del | TTC | --- | 1 | 1 | AY.4 | 0.000002 |
S | 541 | F541S | tTc | tCc | 1 | 1 | AY.4 | 0.000002 |
S | 541 | F541L | ttC | ttA | 1 | 1 | AY.4 | 0.000002 |
S | 541 | F541F | ttC | ttT | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 541 | F541F | ttC | ttT | 1 | 1 | AY.4.5 | 0.000107 |
S | 541 | F541F | ttC | ttT | 1 | 1 | AY.45 | 0.000122 |
S | 541 | F541F | ttC | ttT | 1 | 1 | AY.46 | 0.000104 |
S | 541 | F541del | TTC | --- | 1 | 1 | AY.46.6 | 0.000072 |
S | 541 | F541F | ttC | ttT | 1 | 1 | AY.50 | 0.000799 |
S | 541 | F541F | ttC | ttT | 1 | 1 | AY.6 | 0.000041 |
S | 541 | F541del | TTC | --- | 1 | 1 | AY.75 | 0.000056 |
S | 541 | F541F | ttC | ttT | 1 | 1 | AY.75.1 | 0.00018 |
S | 541 | F541F | ttC | ttT | 1 | 1 | AY.85 | 0.000427 |
S | 541 | F541F | ttC | ttT | 1 | 1 | AY.88 | 0.000884 |
S | 541 | F541F | ttC | ttT | 1 | 1 | AY.9 | 0.000068 |
S | 541 | F541del | TTC | --- | 1 | 1 | AY.99 | 0.001049 |
S | 541 | F541F | ttC | ttT | 1 | 1 | AY.99.1 | 0.001553 |
S | 541 | F541L | ttC | ttA | 1 | 1 | B | 0.000128 |
S | 541 | F541X | tTC | tGA | 1 | 1 | B | 0.000128 |
S | 541 | F541S | tTc | tCc | 1 | 1 | B.1 | 0.000009 |
S | 541 | F541del | TTC | --- | 1 | 1 | B.1 | 0.000009 |
S | 541 | F541X | tTC | tAA | 1 | 1 | B.1 | 0.000009 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.1.148 | 0.008772 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.1.180 | 0.010753 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.1.291 | 0.000742 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.1.294 | 0.001266 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.1.336 | 0.016667 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.1.372 | 0.000689 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.1.41 | 0.006329 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.1.5 | 0.008333 |
S | 541 | F541L | ttC | ttA | 1 | 1 | B.1.1.519 | 0.00004 |
S | 541 | F541Y | tTc | tAc | 1 | 1 | B.1.160 | 0.000031 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.160.29 | 0.004219 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.160.9 | 0.007194 |
S | 541 | F541I | Ttc | Atc | 1 | 1 | B.1.177 | 0.000013 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.177.17 | 0.000821 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.177.23 | 0.003236 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.177.58 | 0.001332 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.177.7 | 0.000165 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.177.73 | 0.000566 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.177.81 | 0.000189 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.177.82 | 0.000477 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.177.84 | 0.006667 |
S | 541 | F541S | tTc | tCc | 1 | 1 | B.1.2 | 0.000009 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.210 | 0.002132 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.23 | 0.006061 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.234 | 0.000132 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.238 | 0.014925 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.258.17 | 0.000104 |
S | 541 | F541L | ttC | ttA | 1 | 1 | B.1.301 | 0.005917 |
S | 541 | F541del | TTC | --- | 1 | 1 | B.1.311 | 0.000275 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.349 | 0.000715 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.351.2 | 0.000303 |
S | 541 | F541del | TTC | --- | 1 | 1 | B.1.36.18 | 0.00042 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.36.36 | 0.000602 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.36.7 | 0.004 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.36.8 | 0.001 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.369 | 0.000285 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.382 | 0.008929 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.397 | 0.004854 |
S | 541 | F541del | TTC | --- | 1 | 1 | B.1.415 | 0.014286 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.420 | 0.010417 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.424 | 0.008065 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.426 | 0.001009 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.451 | 0.008197 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.456 | 0.003268 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.499 | 0.00105 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.524 | 0.001406 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.525 | 0.000113 |
S | 541 | F541I | Ttc | Atc | 1 | 1 | B.1.525 | 0.000113 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.540 | 0.009709 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.576 | 0.000907 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.577 | 0.000687 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.1.612 | 0.002653 |
S | 541 | F541L | Ttc | Ctc | 1 | 1 | B.1.617.2 | 0.000004 |
S | 541 | F541del | TTC | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 541 | F541L | Ttc | Ctc | 1 | 1 | B.1.636 | 0.006711 |
S | 541 | F541F | ttC | ttT | 1 | 1 | B.40 | 0.000364 |
S | 541 | F541L | ttC | ttA | 1 | 1 | B.6 | 0.00091 |
S | 541 | F541F | ttC | ttT | 1 | 1 | C.1.2 | 0.004255 |
S | 541 | F541F | ttC | ttT | 1 | 1 | C.26 | 0.007353 |
S | 541 | F541del | TTC | --- | 1 | 1 | D.2 | 0.000075 |
S | 541 | F541F | ttC | ttT | 1 | 1 | D.2 | 0.000075 |
S | 541 | F541L | ttC | ttG | 1 | 1 | P.1.1 | 0.000318 |
S | 541 | F541F | ttC | ttT | 1 | 1 | P.1.17 | 0.000162 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|