CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 522

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	522	A522S		nonsyn	Gca	Tca	5792	5792	1	23126-23128
S	522	A522V		nonsyn	gCa	gTa	5781	5764	0.997059	23126-23128
S	522	A522V		nonsyn	gCA	gTT	5781	9	0.00155682	23126-23128
S	522	A522V		nonsyn	gCA	gTG	5781	8	0.00138384	23126-23128
S	522	A522P		nonsyn	Gca	Cca	763	761	0.997379	23126-23128
S	522	A522P		nonsyn	GcA	CcC	763	2	0.00262123	23126-23128
S	522	A522A		syn	gcA	gcT	209	101	0.483254	23126-23128
S	522	A522A		syn	gcA	gcG	209	93	0.444976	23126-23128
S	522	A522A		syn	gcA	gcC	209	15	0.0717703	23126-23128
S	522	A522T		nonsyn	Gca	Aca	121	119	0.983471	23126-23128
S	522	A522T		nonsyn	GcA	AcG	121	2	0.0165289	23126-23128
S	522	A522E		nonsyn	gCa	gAa	42	39	0.928571	23126-23128
S	522	A522E		nonsyn	gCA	gAG	42	3	0.0714286	23126-23128
S	522	A522del		del	GCA	---	28	28	1	23126-23128
S	522	A522G		nonsyn	gCa	gGa	26	22	0.846154	23126-23128
S	522	A522G		nonsyn	gCA	gGG	26	4	0.153846	23126-23128
S	522	A522R		nonsyn	GCa	AGa	15	13	0.866667	23126-23128
S	522	A522R		nonsyn	GCA	AGG	15	2	0.133333	23126-23128
S	522	A522I		nonsyn	GCa	ATa	13	13	1	23126-23128
S	522	A522M		nonsyn	GCA	ATG	5	5	1	23126-23128
S	522	A522L		nonsyn	GCa	TTa	5	3	0.6	23126-23128
S	522	A522L		nonsyn	GCa	CTa	5	1	0.2	23126-23128
S	522	A522L		nonsyn	GCA	CTG	5	1	0.2	23126-23128
S	522	A522D		nonsyn	gCA	gAC	3	3	1	23126-23128
S	522	A522Q		nonsyn	GCa	CAa	3	2	0.666667	23126-23128
S	522	A522Q		nonsyn	GCA	CAG	3	1	0.333333	23126-23128
S	522	A522del1		del	Gca	-ca	2	2	1	23126-23128
S	522	A522K		nonsyn	GCA	AAG	2	1	0.5	23126-23128
S	522	A522K		nonsyn	GCa	AAa	2	1	0.5	23126-23128
S	522	A522del2		del	gCA	g--	1	1	1	23126-23128

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	522	A522S	Gca	Tca	5792	5792	All	0.001108
S	522	A522V	gCa	gTa	5764	5781	All	0.001102
S	522	A522V	gCA	gTT	9	5781	All	0.000002
S	522	A522V	gCA	gTG	8	5781	All	0.000002
S	522	A522V	gCa	gTa	2883	2884	AY.25	0.017341
S	522	A522V	gCA	gTT	1	2884	AY.25	0.000006
S	522	A522S	Gca	Tca	1607	1607	B.1.1.7	0.001439
S	522	A522S	Gca	Tca	1258	1258	B.1.1.317	0.517909
S	522	A522S	Gca	Tca	836	836	AY.4	0.001301
S	522	A522P	Gca	Cca	761	763	All	0.000146
S	522	A522P	GcA	CcC	2	763	All	0
S	522	A522V	gCa	gTa	431	431	AY.4	0.000671
S	522	A522P	Gca	Cca	318	318	B.1.429	0.007482
S	522	A522V	gCa	gTa	281	281	B.1.1.7	0.000252
S	522	A522S	Gca	Tca	245	245	B.1.596	0.021349
S	522	A522V	gCa	gTa	223	227	B.1.617.2	0.00084
S	522	A522V	gCA	gTG	3	227	B.1.617.2	0.000011
S	522	A522V	gCA	gTT	1	227	B.1.617.2	0.000004
S	522	A522S	Gca	Tca	221	221	B.1.2	0.001946
S	522	A522A	gcA	gcT	101	209	All	0.000019
S	522	A522A	gcA	gcG	93	209	All	0.000018
S	522	A522A	gcA	gcC	15	209	All	0.000003
S	522	A522V	gCa	gTa	187	187	AY.103	0.001161
S	522	A522V	gCa	gTa	178	179	AY.43	0.000789
S	522	A522V	gCA	gTG	1	179	AY.43	0.000004
S	522	A522S	Gca	Tca	169	169	B.1.617.2	0.000636
S	522	A522T	Gca	Aca	119	121	All	0.000023
S	522	A522T	GcA	AcG	2	121	All	0
S	522	A522S	Gca	Tca	120	120	AY.111	0.021978
S	522	A522S	Gca	Tca	106	106	B.1.1	0.001923
S	522	A522S	Gca	Tca	105	105	B.1.564	0.044719
S	522	A522P	Gca	Cca	103	103	AY.44	0.000627
S	522	A522V	gCa	gTa	100	101	B.1.2	0.000881
S	522	A522V	gCA	gTT	1	101	B.1.2	0.000009
S	522	A522V	gCa	gTa	80	81	AY.44	0.000487
S	522	A522V	gCA	gTT	1	81	AY.44	0.000006
S	522	A522P	Gca	Cca	75	75	B.1.1.7	0.000067
S	522	A522S	Gca	Tca	66	66	B.1	0.000605
S	522	A522S	Gca	Tca	62	62	AY.103	0.000385
S	522	A522V	gCa	gTa	61	62	B.1	0.000559
S	522	A522V	gCA	gTT	1	62	B.1	0.000009
S	522	A522V	gCa	gTa	59	59	B.1.36.23	0.967213
S	522	A522S	Gca	Tca	58	58	AS.2	0.90625
S	522	A522S	Gca	Tca	57	57	AY.120.2.1	0.028401
S	522	A522V	gCa	gTa	57	57	AY.26	0.001614
S	522	A522V	gCa	gTa	56	57	B.1.429	0.001318
S	522	A522V	gCA	gTT	1	57	B.1.429	0.000024
S	522	A522S	Gca	Tca	54	54	AY.43	0.000239
S	522	A522S	Gca	Tca	43	43	AY.25	0.000259
S	522	A522E	gCa	gAa	39	42	All	0.000007
S	522	A522E	gCA	gAG	3	42	All	0.000001
S	522	A522V	gCa	gTa	42	42	B.1.177	0.000553
S	522	A522V	gCa	gTa	40	40	AY.39.1	0.001585
S	522	A522V	gCa	gTa	37	37	B.1.427	0.001868
S	522	A522S	Gca	Tca	35	35	AY.49	0.111821
S	522	A522S	Gca	Tca	33	33	AY.102	0.000875
S	522	A522S	Gca	Tca	32	32	AY.13	0.005151
S	522	A522S	Gca	Tca	32	32	AY.39	0.000791
S	522	A522S	Gca	Tca	29	29	AY.44	0.000177
S	522	A522V	gCa	gTa	29	29	B.1.428.1	1
S	522	A522V	gCa	gTa	29	29	P.1	0.000457
S	522	A522del	GCA	---	28	28	All	0.000005
S	522	A522V	gCa	gTa	28	28	AY.39	0.000692
S	522	A522A	gcA	gcT	22	27	B.1.1.7	0.00002
S	522	A522A	gcA	gcG	4	27	B.1.1.7	0.000004
S	522	A522A	gcA	gcC	1	27	B.1.1.7	0.000001
S	522	A522V	gCa	gTa	27	27	B.1.351	0.000803
S	522	A522G	gCa	gGa	22	26	All	0.000004
S	522	A522G	gCA	gGG	4	26	All	0.000001
S	522	A522T	Gca	Aca	25	26	AY.43	0.000111
S	522	A522T	GcA	AcG	1	26	AY.43	0.000004
S	522	A522S	Gca	Tca	25	25	AY.29	0.000394
S	522	A522V	gCa	gTa	25	25	AY.3	0.000249
S	522	A522P	Gca	Cca	25	25	B.1.1.519	0.000993
S	522	A522V	gCa	gTa	25	25	B.1.258	0.001664
S	522	A522V	gCa	gTa	25	25	B.1.311	0.006864
S	522	A522V	gCa	gTa	24	24	B.1.1	0.000435
S	522	A522V	gCa	gTa	23	23	AY.98.1	0.001114
S	522	A522S	Gca	Tca	22	22	AY.42	0.000885
S	522	A522V	gCa	gTa	22	22	B.1.1.214	0.00122
S	522	A522S	Gca	Tca	22	22	B.1.1.50	0.014936
S	522	A522V	gCa	gTa	21	21	B.1.1.519	0.000834
S	522	A522V	gCa	gTa	19	20	AY.100	0.000874
S	522	A522V	gCA	gTT	1	20	AY.100	0.000046
S	522	A522V	gCa	gTa	20	20	AY.5	0.000413
S	522	A522T	Gca	Aca	19	19	B.1.1.7	0.000017
S	522	A522V	gCa	gTa	19	19	B.1.526	0.000447
S	522	A522A	gcA	gcG	13	19	B.1.617.2	0.000049
S	522	A522A	gcA	gcT	6	19	B.1.617.2	0.000023
S	522	A522V	gCa	gTa	18	18	AY.102	0.000477
S	522	A522V	gCa	gTa	18	18	AY.118	0.001128
S	522	A522S	Gca	Tca	18	18	B.1.1.519	0.000715
S	522	A522V	gCa	gTa	17	17	AY.3.1	0.001449
S	522	A522V	gCa	gTa	16	17	AY.42	0.000644
S	522	A522V	gCA	gTG	1	17	AY.42	0.00004
S	522	A522P	Gca	Cca	17	17	B.1.617.2	0.000064
S	522	A522S	Gca	Tca	16	16	AY.100	0.000736
S	522	A522A	gcA	gcT	11	16	AY.25	0.000066
S	522	A522A	gcA	gcC	3	16	AY.25	0.000018
S	522	A522A	gcA	gcG	2	16	AY.25	0.000012
S	522	A522P	Gca	Cca	16	16	AY.4	0.000025
S	522	A522S	Gca	Tca	16	16	AY.4.2	0.000347
S	522	A522V	gCa	gTa	16	16	AY.47	0.000498
S	522	A522S	Gca	Tca	16	16	B.1.160	0.000499
S	522	A522V	gCa	gTa	16	16	B.1.221	0.001137
S	522	A522R	GCa	AGa	13	15	All	0.000002
S	522	A522R	GCA	AGG	2	15	All	0
S	522	A522P	Gca	Cca	15	15	AY.102	0.000398
S	522	A522V	gCa	gTa	15	15	AY.113	0.002136
S	522	A522V	gCa	gTa	15	15	AY.14	0.00132
S	522	A522V	gCa	gTa	15	15	AY.46	0.001561
S	522	A522S	Gca	Tca	15	15	B.1.351	0.000446
S	522	A522V	gCa	gTa	15	15	B.58	0.153061
S	522	A522V	gCa	gTa	14	14	B.1.428	0.014286
S	522	A522T	Gca	Aca	13	14	B.1.617.2	0.000049
S	522	A522T	GcA	AcG	1	14	B.1.617.2	0.000004
S	522	A522I	GCa	ATa	13	13	All	0.000002
S	522	A522S	Gca	Tca	13	13	AY.119	0.000459
S	522	A522V	gCa	gTa	13	13	AY.120	0.000483
S	522	A522V	gCa	gTa	13	13	AY.27	0.000841
S	522	A522A	gcA	gcT	8	13	AY.4	0.000012
S	522	A522A	gcA	gcG	3	13	AY.4	0.000005
S	522	A522A	gcA	gcC	2	13	AY.4	0.000003
S	522	A522S	Gca	Tca	12	12	AY.3	0.000119
S	522	A522V	gCa	gTa	11	11	AY.119	0.000388
S	522	A522V	gCa	gTa	11	11	AY.20	0.000428
S	522	A522P	Gca	Cca	11	11	AY.5	0.000227
S	522	A522S	Gca	Tca	11	11	B.1.1.214	0.00061
S	522	A522S	Gca	Tca	11	11	B.1.617.1	0.001419
S	522	A522V	gCa	gTa	10	10	AY.117	0.000845
S	522	A522S	Gca	Tca	10	10	AY.39.1	0.000396
S	522	A522P	Gca	Cca	10	10	AY.74	0.001156
S	522	A522P	Gca	Cca	10	10	B.1	0.000092
S	522	A522V	gCa	gTa	10	10	B.1.1.289	0.020833
S	522	A522A	gcA	gcG	10	10	B.1.177	0.000132
S	522	A522S	Gca	Tca	10	10	B.1.177	0.000132
S	522	A522P	Gca	Cca	10	10	B.1.2	0.000088
S	522	A522A	gcA	gcG	10	10	B.1.293	0.125
S	522	A522P	Gca	Cca	10	10	P.1.14	0.000478
S	522	A522S	Gca	Tca	9	9	AY.120	0.000335
S	522	A522P	Gca	Cca	9	9	AY.20	0.00035
S	522	A522V	gCa	gTa	9	9	AY.29	0.000142
S	522	A522V	gCa	gTa	9	9	AY.40	0.008679
S	522	A522A	gcA	gcT	9	9	AY.5.3	0.003036
S	522	A522P	Gca	Cca	9	9	AY.99.2	0.000829
S	522	A522P	Gca	Cca	9	9	B.1.1	0.000163
S	522	A522V	gCa	gTa	9	9	B.1.1.222	0.001836
S	522	A522S	Gca	Tca	9	9	B.1.1.222	0.001836
S	522	A522V	gCa	gTa	9	9	B.1.177.4	0.0019
S	522	A522V	gCa	gTa	9	9	B.1.243	0.000626
S	522	A522S	Gca	Tca	9	9	B.1.351.2	0.002723
S	522	A522V	gCa	gTa	9	9	C.36	0.008197
S	522	A522S	Gca	Tca	9	9	P.1	0.000142
S	522	A522S	Gca	Tca	9	9	Q.8	0.001484
S	522	A522A	gcA	gcT	6	8	AY.103	0.000037
S	522	A522A	gcA	gcG	2	8	AY.103	0.000012
S	522	A522P	Gca	Cca	8	8	AY.3.1	0.000682
S	522	A522P	Gca	Cca	8	8	AY.33	0.000534
S	522	A522V	gCa	gTa	8	8	AY.6	0.000329
S	522	A522V	gCa	gTa	8	8	AY.75	0.000448
S	522	A522V	gCa	gTa	8	8	AY.85	0.003417
S	522	A522V	gCa	gTa	8	8	B	0.001022
S	522	A522S	Gca	Tca	8	8	B.1.1.33	0.003367
S	522	A522S	Gca	Tca	8	8	B.1.1.63	0.003086
S	522	A522V	gCa	gTa	8	8	B.1.177.73	0.00453
S	522	A522V	gCa	gTa	8	8	B.1.36	0.001167
S	522	A522V	gCa	gTa	8	8	B.1.596	0.000697
S	522	A522V	gCa	gTa	8	8	P.1.14	0.000382
S	522	A522S	Gca	Tca	8	8	Q.1	0.001011
S	522	A522S	Gca	Tca	7	7	A	0.002709
S	522	A522S	Gca	Tca	7	7	AY.33	0.000467
S	522	A522V	gCa	gTa	7	7	AY.4.2	0.000152
S	522	A522S	Gca	Tca	7	7	AY.4.4	0.002864
S	522	A522T	Gca	Aca	7	7	AY.44	0.000043
S	522	A522S	Gca	Tca	7	7	AY.46.4	0.001152
S	522	A522V	gCa	gTa	7	7	AY.5.4	0.001937
S	522	A522V	gCa	gTa	7	7	AY.82	0.009498
S	522	A522P	Gca	Cca	7	7	AY.9.1	0.000586
S	522	A522V	gCa	gTa	7	7	B.1.177.8	0.005267
S	522	A522S	Gca	Tca	7	7	B.1.282	0.104478
S	522	A522S	Gca	Tca	7	7	B.1.429	0.000165
S	522	A522S	Gca	Tca	7	7	P.1.7	0.002235
S	522	A522S	Gca	Tca	7	7	Q.4	0.003183
S	522	A522S	Gca	Tca	6	6	AY.114	0.001387
S	522	A522V	gCa	gTa	6	6	AY.23	0.000418
S	522	A522P	Gca	Cca	6	6	AY.25	0.000036
S	522	A522A	gcA	gcG	6	6	AY.3	0.00006
S	522	A522V	gCa	gTa	6	6	AY.33	0.000401
S	522	A522S	Gca	Tca	6	6	AY.34	0.000582
S	522	A522A	gcA	gcG	5	6	AY.43	0.000022
S	522	A522A	gcA	gcT	1	6	AY.43	0.000004
S	522	A522S	Gca	Tca	6	6	AY.46	0.000624
S	522	A522S	Gca	Tca	6	6	AY.5	0.000124
S	522	A522E	gCa	gAa	6	6	B.1	0.000055
S	522	A522A	gcA	gcT	3	6	B.1	0.000027
S	522	A522A	gcA	gcG	2	6	B.1	0.000018
S	522	A522A	gcA	gcC	1	6	B.1	0.000009
S	522	A522S	Gca	Tca	6	6	B.1.1.48	0.017241
S	522	A522E	gCa	gAa	6	6	B.1.1.7	0.000005
S	522	A522S	Gca	Tca	6	6	B.1.164	0.089552
S	522	A522A	gcA	gcT	5	6	B.1.2	0.000044
S	522	A522A	gcA	gcG	1	6	B.1.2	0.000009
S	522	A522V	gCa	gTa	6	6	B.1.234	0.000792
S	522	A522V	gCa	gTa	6	6	B.1.389	0.006012
S	522	A522S	Gca	Tca	6	6	B.1.396	0.004234
S	522	A522S	Gca	Tca	6	6	B.1.526	0.000141
S	522	A522S	Gca	Tca	6	6	B.1.561	0.002382
S	522	A522V	gCa	gTa	6	6	B.1.567	0.02
S	522	A522G	gCa	gGa	5	6	B.1.617.2	0.000019
S	522	A522G	gCA	gGG	1	6	B.1.617.2	0.000004
S	522	A522V	gCa	gTa	6	6	C.37	0.000696
S	522	A522A	gcA	gcG	6	6	P.1	0.000095
S	522	A522V	gCa	gTa	6	6	P.1.17	0.000971
S	522	A522M	GCA	ATG	5	5	All	0.000001
S	522	A522L	GCa	TTa	3	5	All	0.000001
S	522	A522L	GCa	CTa	1	5	All	0
S	522	A522L	GCA	CTG	1	5	All	0
S	522	A522P	Gca	Cca	5	5	AY.103	0.000031
S	522	A522S	Gca	Tca	5	5	AY.117	0.000423
S	522	A522T	Gca	Aca	5	5	AY.4	0.000008
S	522	A522I	GCa	ATa	5	5	AY.43	0.000022
S	522	A522T	Gca	Aca	5	5	AY.45	0.000608
S	522	A522S	Gca	Tca	5	5	B.1.1.263	0.007788
S	522	A522P	Gca	Cca	5	5	B.1.177.15	0.003155
S	522	A522V	gCa	gTa	5	5	B.1.177.79	0.01171
S	522	A522S	Gca	Tca	5	5	B.1.221	0.000355
S	522	A522S	Gca	Tca	5	5	B.1.241	0.004058
S	522	A522S	Gca	Tca	5	5	B.1.36	0.00073
S	522	A522S	Gca	Tca	5	5	B.1.369	0.001426
S	522	A522R	GCa	AGa	4	5	B.1.617.2	0.000015
S	522	A522R	GCA	AGG	1	5	B.1.617.2	0.000004
S	522	A522P	Gca	Cca	5	5	P.1	0.000079
S	522	A522S	Gca	Tca	5	5	P.1.14	0.000239
S	522	A522V	gCa	gTa	5	5	P.2	0.000933
S	522	A522V	gCa	gTa	5	5	Q.3	0.000725
S	522	A522S	Gca	Tca	5	5	Q.3	0.000725
S	522	A522P	GcA	CcC	2	4		0.111111
S	522	A522P	Gca	Cca	2	4		0.111111
S	522	A522A	gcA	gcG	4	4	AY.102	0.000106
S	522	A522V	gCa	gTa	4	4	AY.116	0.001147
S	522	A522S	Gca	Tca	4	4	AY.116	0.001147
S	522	A522P	Gca	Cca	4	4	AY.118	0.000251
S	522	A522S	Gca	Tca	4	4	AY.26	0.000113
S	522	A522V	gCa	gTa	4	4	AY.4.5	0.00043
S	522	A522G	gCa	gGa	4	4	AY.43	0.000018
S	522	A522R	GCa	AGa	4	4	AY.43	0.000018
S	522	A522V	gCa	gTa	4	4	AY.46.3	0.003735
S	522	A522V	gCa	gTa	3	4	AY.46.6	0.000217
S	522	A522V	gCA	gTG	1	4	AY.46.6	0.000072
S	522	A522V	gCa	gTa	4	4	AY.60	0.003752
S	522	A522V	gCa	gTa	4	4	AY.61	0.000419
S	522	A522V	gCa	gTa	3	4	AY.9.2	0.00011
S	522	A522V	gCA	gTG	1	4	AY.9.2	0.000037
S	522	A522S	Gca	Tca	4	4	AY.98	0.000316
S	522	A522T	Gca	Aca	4	4	B.1	0.000037
S	522	A522S	Gca	Tca	4	4	B.1.1.153	0.004381
S	522	A522V	gCa	gTa	4	4	B.1.1.25	0.002274
S	522	A522V	gCa	gTa	4	4	B.1.1.284	0.00043
S	522	A522V	gCa	gTa	4	4	B.1.1.294	0.005063
S	522	A522S	Gca	Tca	4	4	B.1.1.306	0.001754
S	522	A522S	Gca	Tca	4	4	B.1.1.372	0.002755
S	522	A522V	gCa	gTa	4	4	B.1.1.523	0.00625
S	522	A522V	gCa	gTa	4	4	B.1.160	0.000125
S	522	A522P	Gca	Cca	4	4	B.1.177	0.000053
S	522	A522S	Gca	Tca	4	4	B.1.234	0.000528
S	522	A522A	gcA	gcT	4	4	B.1.36.38	0.006568
S	522	A522S	Gca	Tca	4	4	B.1.525	0.000453
S	522	A522V	gCa	gTa	4	4	B.1.637	0.000292
S	522	A522V	gCa	gTa	4	4	C.36.3	0.002269
S	522	A522V	gCa	gTa	4	4	P.1.13	0.003594
S	522	A522S	Gca	Tca	4	4	P.2	0.000747
S	522	A522S	Gca	Tca	3	3	A.1	0.000846
S	522	A522S	Gca	Tca	3	3	A.2.3	0.014218
S	522	A522D	gCA	gAC	3	3	All	0.000001
S	522	A522Q	GCa	CAa	2	3	All	0
S	522	A522Q	GCA	CAG	1	3	All	0
S	522	A522A	gcA	gcG	3	3	AY.109	0.002219
S	522	A522V	gCa	gTa	2	3	AY.110	0.000225
S	522	A522G	gCa	gGa	2	3	AY.110	0.000225
S	522	A522G	gCA	gGG	1	3	AY.110	0.000113
S	522	A522V	gCA	gTG	1	3	AY.110	0.000113
S	522	A522S	Gca	Tca	3	3	AY.113	0.000427
S	522	A522P	Gca	Cca	3	3	AY.3	0.00003
S	522	A522V	gCa	gTa	3	3	AY.36	0.000445
S	522	A522A	gcA	gcG	2	3	AY.39	0.000049
S	522	A522A	gcA	gcT	1	3	AY.39	0.000025
S	522	A522E	gCa	gAa	3	3	AY.4	0.000005
S	522	A522T	Gca	Aca	3	3	AY.42	0.000121
S	522	A522R	GCa	AGa	2	3	AY.42	0.00008
S	522	A522G	gCa	gGa	2	3	AY.42	0.00008
S	522	A522G	gCA	gGG	1	3	AY.42	0.00004
S	522	A522R	GCA	AGG	1	3	AY.42	0.00004
S	522	A522V	gCa	gTa	3	3	AY.59	0.001589
S	522	A522V	gCa	gTa	3	3	AY.65	0.001599
S	522	A522V	gCa	gTa	3	3	AY.75.1	0.000541
S	522	A522V	gCa	gTa	3	3	AY.9	0.000203
S	522	A522E	gCa	gAa	2	3	AY.9.2	0.000073
S	522	A522E	gCA	gAG	1	3	AY.9.2	0.000037
S	522	A522V	gCa	gTa	3	3	AY.98	0.000237
S	522	A522S	Gca	Tca	3	3	B	0.000383
S	522	A522G	gCa	gGa	3	3	B.1.1	0.000054
S	522	A522V	gCa	gTa	3	3	B.1.1.113	0.020979
S	522	A522S	Gca	Tca	3	3	B.1.1.305	0.011583
S	522	A522V	gCa	gTa	3	3	B.1.1.432	0.003797
S	522	A522S	Gca	Tca	3	3	B.1.1.486	0.004732
S	522	A522del	GCA	---	3	3	B.1.1.7	0.000003
S	522	A522V	gCa	gTa	3	3	B.1.1.70	0.001023
S	522	A522S	Gca	Tca	3	3	B.1.110.3	0.002155
S	522	A522S	Gca	Tca	3	3	B.1.177.15	0.001893
S	522	A522V	gCa	gTa	3	3	B.1.177.50	0.014085
S	522	A522V	gCa	gTa	3	3	B.1.177.72	0.010169
S	522	A522V	gCa	gTa	3	3	B.1.177.81	0.000568
S	522	A522V	gCa	gTa	3	3	B.1.22	0.003953
S	522	A522S	Gca	Tca	3	3	B.1.243	0.000209
S	522	A522S	Gca	Tca	3	3	B.1.258	0.0002
S	522	A522A	gcA	gcT	3	3	B.1.258	0.0002
S	522	A522V	gCa	gTa	3	3	B.1.258.17	0.000312
S	522	A522S	Gca	Tca	3	3	B.1.349	0.002144
S	522	A522V	gCa	gTa	3	3	B.1.438.1	0.000322
S	522	A522T	Gca	Aca	3	3	B.1.526	0.000071
S	522	A522S	Gca	Tca	3	3	B.1.609	0.001438
S	522	A522V	gCa	gTa	3	3	B.1.617.1	0.000387
S	522	A522I	GCa	ATa	3	3	B.1.617.2	0.000011
S	522	A522V	gCa	gTa	3	3	B.1.621	0.000266
S	522	A522S	Gca	Tca	3	3	B.1.93	0.002801
S	522	A522S	Gca	Tca	3	3	C.36	0.002732
S	522	A522V	gCa	gTa	3	3	R.1	0.00027
S	522	A522A	gcA	gcC	2	2		0.111111
S	522	A522V	gCa	gTa	2	2	A	0.000774
S	522	A522V	gCa	gTa	2	2	A.1	0.000564
S	522	A522del1	Gca	-ca	2	2	All	0
S	522	A522K	GCA	AAG	1	2	All	0
S	522	A522K	GCa	AAa	1	2	All	0
S	522	A522T	Gca	Aca	2	2	AY.103	0.000012
S	522	A522V	gCa	gTa	2	2	AY.106	0.00067
S	522	A522T	Gca	Aca	2	2	AY.110	0.000225
S	522	A522R	GCa	AGa	2	2	AY.110	0.000225
S	522	A522S	Gca	Tca	2	2	AY.118	0.000125
S	522	A522A	gcA	gcG	2	2	AY.119	0.000071
S	522	A522V	gCa	gTa	2	2	AY.120.1	0.000642
S	522	A522V	gCa	gTa	2	2	AY.16	0.000759
S	522	A522S	Gca	Tca	2	2	AY.20	0.000078
S	522	A522S	Gca	Tca	2	2	AY.23	0.000139
S	522	A522del	GCA	---	2	2	AY.25	0.000012
S	522	A522P	Gca	Cca	2	2	AY.26	0.000057
S	522	A522P	Gca	Cca	2	2	AY.29	0.000032
S	522	A522T	Gca	Aca	2	2	AY.3	0.00002
S	522	A522del	GCA	---	2	2	AY.33	0.000134
S	522	A522P	Gca	Cca	2	2	AY.34	0.000194
S	522	A522V	gCa	gTa	2	2	AY.35	0.000466
S	522	A522P	Gca	Cca	2	2	AY.39.1	0.000079
S	522	A522P	Gca	Cca	2	2	AY.4.3	0.001684
S	522	A522V	gCa	gTa	2	2	AY.4.3	0.001684
S	522	A522S	Gca	Tca	2	2	AY.4.5	0.000215
S	522	A522S	Gca	Tca	2	2	AY.40	0.001929
S	522	A522I	GCa	ATa	2	2	AY.42	0.00008
S	522	A522del	GCA	---	2	2	AY.43	0.000009
S	522	A522E	gCA	gAG	2	2	AY.43	0.000009
S	522	A522V	gCa	gTa	2	2	AY.45	0.000243
S	522	A522I	GCa	ATa	2	2	AY.45	0.000243
S	522	A522P	Gca	Cca	2	2	AY.46	0.000208
S	522	A522V	gCa	gTa	2	2	AY.46.4	0.000329
S	522	A522G	gCa	gGa	1	2	AY.46.6	0.000072
S	522	A522A	gcA	gcT	1	2	AY.46.6	0.000072
S	522	A522A	gcA	gcG	1	2	AY.46.6	0.000072
S	522	A522G	gCA	gGG	1	2	AY.46.6	0.000072
S	522	A522T	Gca	Aca	2	2	AY.5	0.000041
S	522	A522V	gCa	gTa	2	2	AY.52	0.001629
S	522	A522V	gCa	gTa	1	2	AY.54	0.000095
S	522	A522V	gCA	gTT	1	2	AY.54	0.000095
S	522	A522P	Gca	Cca	2	2	AY.7.2	0.001119
S	522	A522A	gcA	gcG	2	2	AY.75	0.000112
S	522	A522P	Gca	Cca	2	2	AY.75	0.000112
S	522	A522P	Gca	Cca	2	2	AY.9	0.000135
S	522	A522T	Gca	Aca	2	2	AY.9.2	0.000073
S	522	A522P	Gca	Cca	2	2	AY.9.2	0.000073
S	522	A522L	GCa	CTa	1	2	AY.9.2	0.000037
S	522	A522K	GCa	AAa	1	2	AY.9.2	0.000037
S	522	A522Q	GCA	CAG	1	2	AY.9.2	0.000037
S	522	A522L	GCA	CTG	1	2	AY.9.2	0.000037
S	522	A522K	GCA	AAG	1	2	AY.9.2	0.000037
S	522	A522Q	GCa	CAa	1	2	AY.9.2	0.000037
S	522	A522V	gCa	gTa	2	2	AY.91	0.001461
S	522	A522V	gCa	gTa	2	2	AY.92	0.000575
S	522	A522V	gCa	gTa	2	2	AY.99.2	0.000184
S	522	A522E	gCa	gAa	2	2	B.1.1	0.000036
S	522	A522S	Gca	Tca	2	2	B.1.1.176	0.000879
S	522	A522S	Gca	Tca	2	2	B.1.1.232	0.00363
S	522	A522V	gCa	gTa	2	2	B.1.1.269	0.002706
S	522	A522S	Gca	Tca	2	2	B.1.1.28	0.000622
S	522	A522A	gcA	gcT	2	2	B.1.1.284	0.000215
S	522	A522S	Gca	Tca	2	2	B.1.1.316	0.00185
S	522	A522L	GCa	TTa	2	2	B.1.1.317	0.000823
S	522	A522S	Gca	Tca	2	2	B.1.1.326	0.003521
S	522	A522S	Gca	Tca	2	2	B.1.1.370	0.025316
S	522	A522V	gCa	gTa	2	2	B.1.110	0.00905
S	522	A522S	Gca	Tca	2	2	B.1.147	0.001512
S	522	A522V	gCa	gTa	2	2	B.1.177.12	0.000303
S	522	A522S	Gca	Tca	2	2	B.1.177.60	0.000437
S	522	A522P	Gca	Cca	2	2	B.1.177.83	0.002963
S	522	A522V	gCa	gTa	2	2	B.1.177.87	0.001456
S	522	A522del	GCA	---	2	2	B.1.2	0.000018
S	522	A522A	gcA	gcT	2	2	B.1.214.2	0.001199
S	522	A522V	gCa	gTa	2	2	B.1.232	0.001075
S	522	A522P	Gca	Cca	2	2	B.1.240	0.000431
S	522	A522E	gCa	gAa	2	2	B.1.243	0.000139
S	522	A522T	Gca	Aca	2	2	B.1.260	0.006689
S	522	A522V	gCa	gTa	2	2	B.1.265	0.002541
S	522	A522V	gCa	gTa	2	2	B.1.36.38	0.003284
S	522	A522V	gCa	gTa	2	2	B.1.396	0.001411
S	522	A522V	gCa	gTa	2	2	B.1.517	0.000854
S	522	A522V	gCa	gTa	2	2	B.1.561	0.000794
S	522	A522V	gCa	gTa	2	2	B.1.609	0.000959
S	522	A522del	GCA	---	2	2	B.1.617.2	0.000008
S	522	A522M	GCA	ATG	2	2	B.1.617.2	0.000008
S	522	A522E	gCa	gAa	2	2	B.1.617.2	0.000008
S	522	A522S	Gca	Tca	2	2	B.1.621	0.000177
S	522	A522P	Gca	Cca	2	2	B.1.621	0.000177
S	522	A522S	Gca	Tca	2	2	B.1.628	0.000705
S	522	A522P	Gca	Cca	2	2	B.1.637	0.000146
S	522	A522E	gCa	gAa	2	2	B.1.637	0.000146
S	522	A522V	gCa	gTa	2	2	B.40	0.000729
S	522	A522S	Gca	Tca	2	2	C.37	0.000232
S	522	A522V	gCa	gTa	2	2	D.2	0.00015
S	522	A522V	gCa	gTa	2	2	P.1.7	0.000639
S	522	A522V	gCa	gTa	2	2	Q.8	0.00033
S	522	A522V	gCa	gTa	1	1		0.055556
S	522	A522E	gCa	gAa	1	1	A	0.000387
S	522	A522V	gCa	gTa	1	1	A.2.5	0.000499
S	522	A522S	Gca	Tca	1	1	A.2.5	0.000499
S	522	A522A	gcA	gcG	1	1	A.23.1	0.000704
S	522	A522P	Gca	Cca	1	1	A.5	0.001923
S	522	A522P	Gca	Cca	1	1	AD.2	0.000219
S	522	A522V	gCa	gTa	1	1	AE.8	0.000489
S	522	A522del2	gCA	g--	1	1	All	0
S	522	A522G	gCa	gGa	1	1	AU.1	0.001266
S	522	A522V	gCa	gTa	1	1	AU.1	0.001266
S	522	A522del	GCA	---	1	1	AY.102	0.000027
S	522	A522A	gcA	gcG	1	1	AY.105	0.000643
S	522	A522del	GCA	---	1	1	AY.105	0.000643
S	522	A522S	Gca	Tca	1	1	AY.106	0.000335
S	522	A522del	GCA	---	1	1	AY.107	0.000466
S	522	A522A	gcA	gcG	1	1	AY.110	0.000113
S	522	A522S	Gca	Tca	1	1	AY.110	0.000113
S	522	A522V	gCa	gTa	1	1	AY.111	0.000183
S	522	A522E	gCa	gAa	1	1	AY.113	0.000142
S	522	A522T	Gca	Aca	1	1	AY.113	0.000142
S	522	A522T	Gca	Aca	1	1	AY.118	0.000063
S	522	A522S	Gca	Tca	1	1	AY.12	0.000316
S	522	A522del	GCA	---	1	1	AY.120	0.000037
S	522	A522V	gCa	gTa	1	1	AY.121	0.000135
S	522	A522P	Gca	Cca	1	1	AY.16	0.00038
S	522	A522S	Gca	Tca	1	1	AY.16.1	0.00047
S	522	A522V	gCa	gTa	1	1	AY.16.1	0.00047
S	522	A522T	Gca	Aca	1	1	AY.16.1	0.00047
S	522	A522A	gcA	gcT	1	1	AY.20	0.000039
S	522	A522P	Gca	Cca	1	1	AY.23	0.00007
S	522	A522A	gcA	gcT	1	1	AY.23	0.00007
S	522	A522E	gCa	gAa	1	1	AY.25	0.000006
S	522	A522T	Gca	Aca	1	1	AY.26	0.000028
S	522	A522S	Gca	Tca	1	1	AY.27	0.000065
S	522	A522S	Gca	Tca	1	1	AY.3.1	0.000085
S	522	A522V	gCa	gTa	1	1	AY.30	0.000396
S	522	A522V	gCa	gTa	1	1	AY.32	0.000532
S	522	A522A	gcA	gcC	1	1	AY.33	0.000067
S	522	A522V	gCa	gTa	1	1	AY.34	0.000097
S	522	A522T	Gca	Aca	1	1	AY.34	0.000097
S	522	A522A	gcA	gcG	1	1	AY.34	0.000097
S	522	A522A	gcA	gcT	1	1	AY.34.1	0.00051
S	522	A522P	Gca	Cca	1	1	AY.34.1	0.00051
S	522	A522S	Gca	Tca	1	1	AY.36	0.000148
S	522	A522V	gCa	gTa	1	1	AY.38	0.000499
S	522	A522T	Gca	Aca	1	1	AY.39	0.000025
S	522	A522A	gcA	gcT	1	1	AY.39.1	0.00004
S	522	A522S	Gca	Tca	1	1	AY.39.1.1	0.000725
S	522	A522del	GCA	---	1	1	AY.4	0.000002
S	522	A522D	gCA	gAC	1	1	AY.4	0.000002
S	522	A522G	gCa	gGa	1	1	AY.4	0.000002
S	522	A522P	Gca	Cca	1	1	AY.4.2	0.000022
S	522	A522V	gCa	gTa	1	1	AY.4.4	0.000409
S	522	A522P	Gca	Cca	1	1	AY.41	0.000294
S	522	A522S	Gca	Tca	1	1	AY.41	0.000294
S	522	A522M	GCA	ATG	1	1	AY.42	0.00004
S	522	A522M	GCA	ATG	1	1	AY.43	0.000004
S	522	A522G	gCa	gGa	1	1	AY.44	0.000006
S	522	A522A	gcA	gcG	1	1	AY.44	0.000006
S	522	A522E	gCa	gAa	1	1	AY.45	0.000122
S	522	A522R	GCa	AGa	1	1	AY.45	0.000122
S	522	A522S	Gca	Tca	1	1	AY.45	0.000122
S	522	A522T	Gca	Aca	1	1	AY.46	0.000104
S	522	A522A	gcA	gcT	1	1	AY.46	0.000104
S	522	A522V	gCa	gTa	1	1	AY.46.2	0.000635
S	522	A522P	Gca	Cca	1	1	AY.46.6	0.000072
S	522	A522S	Gca	Tca	1	1	AY.46.6	0.000072
S	522	A522S	Gca	Tca	1	1	AY.47	0.000031
S	522	A522P	Gca	Cca	1	1	AY.47	0.000031
S	522	A522S	Gca	Tca	1	1	AY.48	0.000465
S	522	A522V	gCa	gTa	1	1	AY.48	0.000465
S	522	A522V	gCa	gTa	1	1	AY.5.3	0.000337
S	522	A522T	Gca	Aca	1	1	AY.5.4	0.000277
S	522	A522S	Gca	Tca	1	1	AY.53	0.000288
S	522	A522V	gCa	gTa	1	1	AY.55	0.000917
S	522	A522T	Gca	Aca	1	1	AY.58	0.000907
S	522	A522S	Gca	Tca	1	1	AY.59	0.00053
S	522	A522S	Gca	Tca	1	1	AY.6	0.000041
S	522	A522A	gcA	gcT	1	1	AY.6	0.000041
S	522	A522P	Gca	Cca	1	1	AY.61	0.000105
S	522	A522V	gCa	gTa	1	1	AY.62	0.000436
S	522	A522V	gCa	gTa	1	1	AY.64	0.000595
S	522	A522V	gCa	gTa	1	1	AY.66	0.00107
S	522	A522S	Gca	Tca	1	1	AY.68	0.000274
S	522	A522V	gCa	gTa	1	1	AY.7	0.000196
S	522	A522S	Gca	Tca	1	1	AY.7.1	0.000113
S	522	A522E	gCa	gAa	1	1	AY.7.2	0.000559
S	522	A522V	gCa	gTa	1	1	AY.72	0.001361
S	522	A522V	gCa	gTa	1	1	AY.73	0.000665
S	522	A522V	gCa	gTa	1	1	AY.74	0.000116
S	522	A522S	Gca	Tca	1	1	AY.74	0.000116
S	522	A522del	GCA	---	1	1	AY.75	0.000056
S	522	A522P	Gca	Cca	1	1	AY.75.1	0.00018
S	522	A522S	Gca	Tca	1	1	AY.77	0.001127
S	522	A522S	Gca	Tca	1	1	AY.78	0.001541
S	522	A522S	Gca	Tca	1	1	AY.8	0.000606
S	522	A522T	Gca	Aca	1	1	AY.84	0.000437
S	522	A522P	Gca	Cca	1	1	AY.85	0.000427
S	522	A522P	Gca	Cca	1	1	AY.88	0.000884
S	522	A522A	gcA	gcT	1	1	AY.9.1	0.000084
S	522	A522I	GCa	ATa	1	1	AY.9.2	0.000037
S	522	A522G	gCa	gGa	1	1	AY.9.2	0.000037
S	522	A522A	gcA	gcT	1	1	AY.9.2	0.000037
S	522	A522M	GCA	ATG	1	1	AY.9.2	0.000037
S	522	A522D	gCA	gAC	1	1	AY.9.2	0.000037
S	522	A522V	gCa	gTa	1	1	AY.91.1	0.004065
S	522	A522S	Gca	Tca	1	1	AY.92	0.000287
S	522	A522S	Gca	Tca	1	1	AY.94	0.000443
S	522	A522V	gCa	gTa	1	1	AY.95	0.000761
S	522	A522T	Gca	Aca	1	1	AY.98	0.000079
S	522	A522A	gcA	gcT	1	1	AY.98.1	0.000048
S	522	A522P	Gca	Cca	1	1	AY.98.1	0.000048
S	522	A522T	Gca	Aca	1	1	AY.99	0.001049
S	522	A522del	GCA	---	1	1	AY.99	0.001049
S	522	A522A	gcA	gcG	1	1	B	0.000128
S	522	A522A	gcA	gcG	1	1	B.1.1	0.000018
S	522	A522L	GCa	TTa	1	1	B.1.1	0.000018
S	522	A522V	gCa	gTa	1	1	B.1.1.1	0.000327
S	522	A522S	Gca	Tca	1	1	B.1.1.1	0.000327
S	522	A522V	gCa	gTa	1	1	B.1.1.10	0.001115
S	522	A522S	Gca	Tca	1	1	B.1.1.128	0.007092
S	522	A522V	gCa	gTa	1	1	B.1.1.141	0.002012
S	522	A522V	gCa	gTa	1	1	B.1.1.153	0.001095
S	522	A522S	Gca	Tca	1	1	B.1.1.161	0.003534
S	522	A522V	gCa	gTa	1	1	B.1.1.170	0.001247
S	522	A522T	Gca	Aca	1	1	B.1.1.198	0.001468
S	522	A522S	Gca	Tca	1	1	B.1.1.198	0.001468
S	522	A522S	Gca	Tca	1	1	B.1.1.207	0.001182
S	522	A522P	Gca	Cca	1	1	B.1.1.214	0.000055
S	522	A522V	gCa	gTa	1	1	B.1.1.216	0.00089
S	522	A522T	Gca	Aca	1	1	B.1.1.216	0.00089
S	522	A522V	gCa	gTa	1	1	B.1.1.220	0.001859
S	522	A522S	Gca	Tca	1	1	B.1.1.227	0.004348
S	522	A522A	gcA	gcG	1	1	B.1.1.228	0.003049
S	522	A522A	gcA	gcT	1	1	B.1.1.241	0.00207
S	522	A522A	gcA	gcC	1	1	B.1.1.25	0.000569
S	522	A522T	Gca	Aca	1	1	B.1.1.25	0.000569
S	522	A522V	gCa	gTa	1	1	B.1.1.253	0.002506
S	522	A522E	gCa	gAa	1	1	B.1.1.254	0.011236
S	522	A522S	Gca	Tca	1	1	B.1.1.255	0.00303
S	522	A522V	gCa	gTa	1	1	B.1.1.263	0.001558
S	522	A522S	Gca	Tca	1	1	B.1.1.265	0.003155
S	522	A522V	gCa	gTa	1	1	B.1.1.277	0.000759
S	522	A522V	gCa	gTa	1	1	B.1.1.288	0.001916
S	522	A522V	gCa	gTa	1	1	B.1.1.301	0.001179
S	522	A522del2	gCA	g--	1	1	B.1.1.306	0.000438
S	522	A522S	Gca	Tca	1	1	B.1.1.311	0.000358
S	522	A522V	gCa	gTa	1	1	B.1.1.312	0.001912
S	522	A522A	gcA	gcG	1	1	B.1.1.354	0.004386
S	522	A522V	gCa	gTa	1	1	B.1.1.354	0.004386
S	522	A522V	gCa	gTa	1	1	B.1.1.369	0.000446
S	522	A522S	Gca	Tca	1	1	B.1.1.369	0.000446
S	522	A522P	Gca	Cca	1	1	B.1.1.373	0.02381
S	522	A522V	gCa	gTa	1	1	B.1.1.382	0.035714
S	522	A522A	gcA	gcG	1	1	B.1.1.39	0.00051
S	522	A522V	gCa	gTa	1	1	B.1.1.398	0.003226
S	522	A522A	gcA	gcC	1	1	B.1.1.409	0.002833
S	522	A522E	gCa	gAa	1	1	B.1.1.418	0.022727
S	522	A522V	gCa	gTa	1	1	B.1.1.433	0.001425
S	522	A522S	Gca	Tca	1	1	B.1.1.456	0.055556
S	522	A522P	Gca	Cca	1	1	B.1.1.462	0.008621
S	522	A522V	gCa	gTa	1	1	B.1.1.518	0.006329
S	522	A522S	Gca	Tca	1	1	B.1.1.52	0.012195
S	522	A522S	Gca	Tca	1	1	B.1.1.521	0.005348
S	522	A522S	Gca	Tca	1	1	B.1.1.523	0.001563
S	522	A522S	Gca	Tca	1	1	B.1.1.525	0.005464
S	522	A522V	gCa	gTa	1	1	B.1.1.525	0.005464
S	522	A522V	gCa	gTa	1	1	B.1.1.63	0.000386
S	522	A522V	gCa	gTa	1	1	B.1.1.67	0.004566
S	522	A522del1	Gca	-ca	1	1	B.1.1.7	0.000001
S	522	A522G	gCa	gGa	1	1	B.1.1.7	0.000001
S	522	A522V	gCa	gTa	1	1	B.1.119	0.010526
S	522	A522S	Gca	Tca	1	1	B.1.128	0.000635
S	522	A522T	Gca	Aca	1	1	B.1.160	0.000031
S	522	A522P	Gca	Cca	1	1	B.1.160	0.000031
S	522	A522V	gCa	gTa	1	1	B.1.160.25	0.011111
S	522	A522V	gCa	gTa	1	1	B.1.164	0.014925
S	522	A522S	Gca	Tca	1	1	B.1.177.10	0.000878
S	522	A522V	gCa	gTa	1	1	B.1.177.11	0.001698
S	522	A522S	Gca	Tca	1	1	B.1.177.21	0.000076
S	522	A522S	Gca	Tca	1	1	B.1.177.4	0.000211
S	522	A522P	Gca	Cca	1	1	B.1.177.43	0.001477
S	522	A522P	Gca	Cca	1	1	B.1.177.46	0.000918
S	522	A522V	gCa	gTa	1	1	B.1.177.46	0.000918
S	522	A522V	gCa	gTa	1	1	B.1.177.48	0.003125
S	522	A522V	gCa	gTa	1	1	B.1.177.51	0.004566
S	522	A522V	gCa	gTa	1	1	B.1.177.58	0.001332
S	522	A522V	gCa	gTa	1	1	B.1.177.6	0.000977
S	522	A522P	Gca	Cca	1	1	B.1.177.60	0.000218
S	522	A522V	gCa	gTa	1	1	B.1.177.62	0.001192
S	522	A522A	gcA	gcG	1	1	B.1.177.7	0.000165
S	522	A522S	Gca	Tca	1	1	B.1.177.7	0.000165
S	522	A522V	gCa	gTa	1	1	B.1.177.7	0.000165
S	522	A522Q	GCa	CAa	1	1	B.1.177.73	0.000566
S	522	A522S	Gca	Tca	1	1	B.1.177.76	0.002494
S	522	A522E	gCa	gAa	1	1	B.1.177.81	0.000189
S	522	A522S	Gca	Tca	1	1	B.1.177.86	0.000183
S	522	A522S	Gca	Tca	1	1	B.1.189	0.004292
S	522	A522S	Gca	Tca	1	1	B.1.194	0.04
S	522	A522V	gCa	gTa	1	1	B.1.195	0.005025
S	522	A522E	gCa	gAa	1	1	B.1.2	0.000009
S	522	A522T	Gca	Aca	1	1	B.1.2	0.000009
S	522	A522A	gcA	gcT	1	1	B.1.210	0.002132
S	522	A522V	gCa	gTa	1	1	B.1.210	0.002132
S	522	A522S	Gca	Tca	1	1	B.1.210	0.002132
S	522	A522T	Gca	Aca	1	1	B.1.221	0.000071
S	522	A522A	gcA	gcG	1	1	B.1.221	0.000071
S	522	A522V	gCa	gTa	1	1	B.1.222	0.001692
S	522	A522A	gcA	gcC	1	1	B.1.234	0.000132
S	522	A522V	gCA	gTT	1	1	B.1.239	0.001221
S	522	A522S	Gca	Tca	1	1	B.1.239	0.001221
S	522	A522E	gCa	gAa	1	1	B.1.240	0.000216
S	522	A522A	gcA	gcC	1	1	B.1.243	0.00007
S	522	A522S	Gca	Tca	1	1	B.1.258.14	0.00098
S	522	A522V	gCa	gTa	1	1	B.1.258.4	0.003448
S	522	A522E	gCa	gAa	1	1	B.1.279	0.000514
S	522	A522S	Gca	Tca	1	1	B.1.298	0.002114
S	522	A522A	gcA	gcG	1	1	B.1.311	0.000275
S	522	A522V	gCa	gTa	1	1	B.1.325	0.006897
S	522	A522V	gCa	gTa	1	1	B.1.340	0.004292
S	522	A522V	gCa	gTa	1	1	B.1.346	0.001311
S	522	A522V	gCa	gTa	1	1	B.1.349	0.000715
S	522	A522E	gCa	gAa	1	1	B.1.351	0.00003
S	522	A522T	Gca	Aca	1	1	B.1.351	0.00003
S	522	A522del	GCA	---	1	1	B.1.351	0.00003
S	522	A522A	gcA	gcT	1	1	B.1.351	0.00003
S	522	A522P	Gca	Cca	1	1	B.1.351	0.00003
S	522	A522V	gCa	gTa	1	1	B.1.351.2	0.000303
S	522	A522P	Gca	Cca	1	1	B.1.36	0.000146
S	522	A522V	gCa	gTa	1	1	B.1.36.17	0.000494
S	522	A522del	GCA	---	1	1	B.1.36.18	0.00042
S	522	A522S	Gca	Tca	1	1	B.1.36.29	0.000517
S	522	A522S	Gca	Tca	1	1	B.1.36.36	0.000602
S	522	A522S	Gca	Tca	1	1	B.1.36.8	0.001
S	522	A522T	Gca	Aca	1	1	B.1.36.9	0.003215
S	522	A522S	Gca	Tca	1	1	B.1.362	0.001541
S	522	A522S	Gca	Tca	1	1	B.1.367	0.000792
S	522	A522V	gCa	gTa	1	1	B.1.369	0.000285
S	522	A522S	Gca	Tca	1	1	B.1.389	0.001002
S	522	A522S	Gca	Tca	1	1	B.1.398	0.002976
S	522	A522V	gCa	gTa	1	1	B.1.398	0.002976
S	522	A522S	Gca	Tca	1	1	B.1.402	0.009804
S	522	A522S	Gca	Tca	1	1	B.1.408	0.00369
S	522	A522del	GCA	---	1	1	B.1.415	0.014286
S	522	A522S	Gca	Tca	1	1	B.1.427	0.00005
S	522	A522A	gcA	gcT	1	1	B.1.429	0.000024
S	522	A522S	Gca	Tca	1	1	B.1.438.1	0.000107
S	522	A522P	Gca	Cca	1	1	B.1.438.1	0.000107
S	522	A522V	gCa	gTa	1	1	B.1.439	0.005917
S	522	A522V	gCa	gTa	1	1	B.1.453	0.003236
S	522	A522P	Gca	Cca	1	1	B.1.456	0.003268
S	522	A522V	gCa	gTa	1	1	B.1.462	0.007246
S	522	A522V	gCa	gTa	1	1	B.1.466.2	0.000391
S	522	A522V	gCa	gTa	1	1	B.1.469	0.00361
S	522	A522V	gCa	gTa	1	1	B.1.505	0.004386
S	522	A522V	gCa	gTa	1	1	B.1.525	0.000113
S	522	A522A	gcA	gcT	1	1	B.1.526	0.000024
S	522	A522del	GCA	---	1	1	B.1.526	0.000024
S	522	A522V	gCa	gTa	1	1	B.1.533	0.009615
S	522	A522V	gCa	gTa	1	1	B.1.536	0.02381
S	522	A522S	Gca	Tca	1	1	B.1.558	0.004566
S	522	A522E	gCa	gAa	1	1	B.1.564	0.000426
S	522	A522P	Gca	Cca	1	1	B.1.567	0.003333
S	522	A522V	gCa	gTa	1	1	B.1.573	0.006098
S	522	A522S	Gca	Tca	1	1	B.1.575	0.000303
S	522	A522V	gCa	gTa	1	1	B.1.576	0.000907
S	522	A522T	Gca	Aca	1	1	B.1.582	0.000491
S	522	A522S	Gca	Tca	1	1	B.1.587	0.001898
S	522	A522S	Gca	Tca	1	1	B.1.597	0.00463
S	522	A522S	Gca	Tca	1	1	B.1.599	0.00365
S	522	A522V	gCa	gTa	1	1	B.1.606	0.006024
S	522	A522P	Gca	Cca	1	1	B.1.617.1	0.000129
S	522	A522D	gCA	gAC	1	1	B.1.617.2	0.000004
S	522	A522del	GCA	---	1	1	B.1.620	0.000946
S	522	A522V	gCa	gTa	1	1	B.1.621.1	0.000506
S	522	A522P	Gca	Cca	1	1	B.1.621.1	0.000506
S	522	A522V	gCa	gTa	1	1	B.1.623	0.000536
S	522	A522V	gCa	gTa	1	1	B.1.628	0.000352
S	522	A522V	gCa	gTa	1	1	B.1.630	0.005236
S	522	A522A	gcA	gcG	1	1	B.1.634	0.003425
S	522	A522V	gCa	gTa	1	1	B.31	0.003731
S	522	A522del	GCA	---	1	1	B.34	0.013699
S	522	A522A	gcA	gcC	1	1	B.40	0.000364
S	522	A522V	gCa	gTa	1	1	B.6	0.00091
S	522	A522V	gCa	gTa	1	1	C.2.1	0.006667
S	522	A522S	Gca	Tca	1	1	C.28	0.04
S	522	A522S	Gca	Tca	1	1	C.35	0.000774
S	522	A522A	gcA	gcT	1	1	C.36.1	0.004149
S	522	A522A	gcA	gcG	1	1	C.37	0.000116
S	522	A522del1	Gca	-ca	1	1	C.37	0.000116
S	522	A522V	gCa	gTa	1	1	C.39	0.018868
S	522	A522P	Gca	Cca	1	1	D.2	0.000075
S	522	A522V	gCa	gTa	1	1	N.4	0.004255
S	522	A522S	Gca	Tca	1	1	N.4	0.004255
S	522	A522S	Gca	Tca	1	1	N.6	0.007092
S	522	A522del	GCA	---	1	1	P.1	0.000016
S	522	A522E	gCa	gAa	1	1	P.1	0.000016
S	522	A522T	Gca	Aca	1	1	P.1.1	0.000318
S	522	A522V	gCa	gTa	1	1	P.1.10.1	0.00813
S	522	A522S	Gca	Tca	1	1	P.1.12	0.000484
S	522	A522V	gCa	gTa	1	1	P.1.12	0.000484
S	522	A522A	gcA	gcT	1	1	P.1.14	0.000048
S	522	A522T	Gca	Aca	1	1	P.1.14	0.000048
S	522	A522V	gCa	gTa	1	1	P.1.15	0.000232
S	522	A522V	gCa	gTa	1	1	P.1.16	0.000374
S	522	A522S	Gca	Tca	1	1	P.1.16	0.000374
S	522	A522S	Gca	Tca	1	1	P.1.17	0.000162
S	522	A522S	Gca	Tca	1	1	P.1.2	0.001156
S	522	A522A	gcA	gcT	1	1	Q.3	0.000145
S	522	A522S	Gca	Tca	1	1	R.1	0.00009
S	522	A522del	GCA	---	1	1	U.3	0.003861
S	522	A522V	gCa	gTa	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.