CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 513

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S513L513LsynctTctC3543290.92937923099-23101
S513L513LsynctTctG354170.048022623099-23101
S513L513LsynctTctA35480.022598923099-23101
S513L513FnonsynCttTtt2412380.98755223099-23101
S513L513FnonsynCtTTtC24130.012448123099-23101
S513L513InonsynCttAtt58570.98275923099-23101
S513L513InonsynCtTAtA5810.017241423099-23101
S513L513deldelCTT---4141123099-23101
S513L513PnonsyncTtcCt38340.89473723099-23101
S513L513PnonsyncTTcCG3820.052631623099-23101
S513L513PnonsyncTTcCC3810.026315823099-23101
S513L513PnonsyncTTcCA3810.026315823099-23101
S513L513VnonsynCttGtt1070.723099-23101
S513L513del1delcTtc-t1060.623099-23101
S513L513VnonsynCtTGtC1020.223099-23101
S513L513del1delcTTc-N1020.223099-23101
S513L513del1delCTT-CS1010.123099-23101
S513L513del1delCtt-tt1010.123099-23101
S513L513VnonsynCtTGtG1010.123099-23101
S513L513SnonsynCTTTCG940.44444423099-23101
S513L513SnonsynCTtAGt930.33333323099-23101
S513L513SnonsynCTTTCC910.11111123099-23101
S513L513SnonsynCTTTCA910.11111123099-23101
S513L513RnonsyncTtcGt840.523099-23101
S513L513RnonsyncTTcGG830.37523099-23101
S513L513RnonsynCTTAGG810.12523099-23101
S513L513TnonsynCTtACt730.42857123099-23101
S513L513TnonsynCTTACG720.28571423099-23101
S513L513TnonsynCTTACA710.14285723099-23101
S513L513TnonsynCTTACC710.14285723099-23101
S513L513HnonsyncTtcAt540.823099-23101
S513L513HnonsyncTTcAC510.223099-23101
S513L513DnonsynCTtGAt33123099-23101
S513L513del2delCTt--t320.66666723099-23101
S513L513del2delCTT--G310.33333323099-23101
S513L513YnonsynCTtTAt210.523099-23101
S513L513YnonsynCTTTAC210.523099-23101
S513L513MnonsynCtTAtG11123099-23101
S513L513QnonsyncTTcAG11123099-23101

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S513L513LctTctC329354All0.000063
S513L513LctTctG17354All0.000003
S513L513LctTctA8354All0.000002
S513L513FCttTtt238241All0.000046
S513L513FCtTTtC3241All0.000001
S513L513LctTctC123123B.1.160.310.991935
S513L513ICttAtt5758All0.000011
S513L513ICtTAtA158All0
S513L513LctTctC4747AY.870.039134
S513L513LctTctC4042B.1.1.70.000036
S513L513LctTctG242B.1.1.70.000002
S513L513delCTT---4141All0.000008
S513L513FCttTtt4040B.1.1.70.000036
S513L513PcTtcCt3438All0.000007
S513L513PcTTcCG238All0
S513L513PcTTcCA138All0
S513L513PcTTcCC138All0
S513L513FCttTtt2323AY.40.000036
S513L513LctTctC2323B.1.1.4450.851852
S513L513ICttAtt1314AY.390.000321
S513L513ICtTAtA114AY.390.000025
S513L513FCttTtt1414B.1.617.20.000053
S513L513FCttTtt1313AY.30.000129
S513L513VCttGtt710All0.000001
S513L513del1cTtc-t610All0.000001
S513L513VCtTGtC210All0
S513L513del1cTTc-N210All0
S513L513del1Ctt-tt110All0
S513L513del1CTT-CS110All0
S513L513VCtTGtG110All0
S513L513FCttTtt1010AY.1030.000062
S513L513LctTctC1010B.1.10.000181
S513L513SCTTTCG49All0.000001
S513L513SCTtAGt39All0.000001
S513L513SCTTTCC19All0
S513L513SCTTTCA19All0
S513L513LctTctC89AY.1030.00005
S513L513LctTctG19AY.1030.000006
S513L513FCttTtt99AY.430.00004
S513L513FCttTtt99B.1.177.830.013333
S513L513RcTtcGt48All0.000001
S513L513RcTTcGG38All0.000001
S513L513RCTTAGG18All0
S513L513FCttTtt88AY.290.000126
S513L513LctTctC88AY.3.10.000682
S513L513FCttTtt88AY.440.000049
S513L513TCTtACt37All0.000001
S513L513TCTTACG27All0
S513L513TCTTACC17All0
S513L513TCTTACA17All0
S513L513LctTctC77AY.250.000042
S513L513ICttAtt77AY.430.000031
S513L513delCTT---77AY.430.000031
S513L513PcTtcCt47B.10.000037
S513L513PcTTcCC17B.10.000009
S513L513PcTTcCG17B.10.000009
S513L513PcTTcCA17B.10.000009
S513L513FCttTtt77B.1.1770.000092
S513L513LctTctC67B.1.5260.000141
S513L513LctTctA17B.1.5260.000024
S513L513ICttAtt77B.1.617.20.000026
S513L513LctTctC56AY.30.00005
S513L513LctTctG16AY.30.00001
S513L513FCttTtt66B.10.000055
S513L513LctTctG36B.1.20.000026
S513L513LctTctC36B.1.20.000026
S513L513LctTctC56B.1.617.20.000019
S513L513LctTctA16B.1.617.20.000004
S513L513HcTtcAt45All0.000001
S513L513HcTTcAC15All0
S513L513FCttTtt55AY.250.00003
S513L513ICttAtt55B.1.1.70.000004
S513L513FCtTTtC340.166667
S513L513HcTtcAt340.166667
S513L513FCttTtt140.055556
S513L513HcTTcAC140.055556
S513L513FCttTtt44AY.1000.000184
S513L513FCttTtt44AY.1170.000338
S513L513PcTtcCt44AY.40.000006
S513L513LctTctC34AY.430.000013
S513L513LctTctG14AY.430.000004
S513L513TCTTACG14B.10.000009
S513L513TCTTACA14B.10.000009
S513L513TCTTACC14B.10.000009
S513L513TCTtACt14B.10.000009
S513L513FCttTtt44B.1.20.000035
S513L513LctTctC44B.1.2210.000284
S513L513LctTctA230.111111
S513L513LctTctC130.055556
S513L513DCTtGAt33All0.000001
S513L513del2CTt--t23All0
S513L513del2CTT--G13All0
S513L513FCttTtt33AY.200.000117
S513L513FCttTtt33AY.260.000085
S513L513FCttTtt33AY.39.10.000119
S513L513ICttAtt33AY.40.000005
S513L513PcTtcCt33AY.430.000013
S513L513FCttTtt33AY.450.000365
S513L513SCTTTCG13B.10.000009
S513L513SCTTTCA13B.10.000009
S513L513SCTTTCC13B.10.000009
S513L513delCTT---33B.1.1.70.000003
S513L513PcTtcCt33B.1.1.70.000003
S513L513LctTctC33B.1.1600.000094
S513L513LctTctC23B.1.3510.000059
S513L513LctTctA13B.1.3510.00003
S513L513LctTctC23B.1.4290.000047
S513L513LctTctA13B.1.4290.000024
S513L513RcTtcGt13B.1.617.20.000004
S513L513RcTTcGG13B.1.617.20.000004
S513L513RCTTAGG13B.1.617.20.000004
S513L513FCttTtt33D.20.000225
S513L513DCTtGAt220.111111
S513L513VCttGtt220.111111
S513L513delCTT---220.111111
S513L513YCTtTAt120.055556
S513L513YCTTTAC120.055556
S513L513YCTTTAC12All0
S513L513YCTtTAt12All0
S513L513FCttTtt22AY.1180.000125
S513L513FCttTtt22AY.1210.000271
S513L513LctTctC22AY.140.000176
S513L513LctTctC22AY.230.000139
S513L513delCTT---22AY.420.00008
S513L513ICttAtt22AY.420.00008
S513L513VCttGtt12AY.430.000004
S513L513VCtTGtC12AY.430.000004
S513L513LctTctC22AY.440.000012
S513L513VCttGtt22AY.470.000062
S513L513LctTctC22AY.50.000041
S513L513ICttAtt22AY.60.000082
S513L513FCttTtt22AY.690.000373
S513L513FCttTtt22AY.710.00095
S513L513FCttTtt22AY.750.000112
S513L513FCttTtt22AY.9.10.000167
S513L513delCTT---22AY.9.20.000073
S513L513RcTtcGt22B0.000256
S513L513delCTT---22B.10.000018
S513L513ICttAtt22B.10.000018
S513L513ICttAtt22B.1.10.000036
S513L513PcTtcCt22B.1.10.000036
S513L513LctTctA12B.1.1.2020.076923
S513L513LctTctC12B.1.1.2020.076923
S513L513LctTctG22B.1.1.630.000772
S513L513LctTctC12B.1.1770.000013
S513L513LctTctA12B.1.1770.000013
S513L513FCttTtt22B.1.3010.011834
S513L513FCttTtt22B.1.5250.000226
S513L513FCttTtt22B.1.5260.000047
S513L513LctTctC22B.1.5610.000794
S513L513delCTT---22B.1.617.20.000008
S513L513TCTTACG12B.1.617.20.000004
S513L513PcTTcCG12B.1.617.20.000004
S513L513SCTtAGt12B.1.617.20.000004
S513L513SCTTTCG12B.1.617.20.000004
S513L513PcTtcCt12B.1.617.20.000004
S513L513TCTtACt12B.1.617.20.000004
S513L513LctTctC22P.1.70.000639
S513L513ICttAtt11A.23.10.000704
S513L513FCttTtt11AE.40.043478
S513L513MCtTAtG11All0
S513L513QcTTcAG11All0
S513L513delCTT---11AY.1020.000027
S513L513FCttTtt11AY.1020.000027
S513L513QcTTcAG11AY.1030.000006
S513L513FCttTtt11AY.1040.001984
S513L513PcTtcCt11AY.1060.000335
S513L513delCTT---11AY.1070.000466
S513L513delCTT---11AY.1080.001103
S513L513delCTT---11AY.1130.000142
S513L513ICttAtt11AY.1170.000085
S513L513LctTctG11AY.1180.000063
S513L513HcTtcAt11AY.1190.000035
S513L513PcTtcCt11AY.1200.000037
S513L513ICttAtt11AY.16.10.00047
S513L513del1cTtc-t11AY.230.00007
S513L513FCttTtt11AY.230.00007
S513L513delCTT---11AY.250.000006
S513L513PcTtcCt11AY.250.000006
S513L513ICttAtt11AY.250.000006
S513L513ICttAtt11AY.260.000028
S513L513FCttTtt11AY.270.000065
S513L513LctTctC11AY.290.000016
S513L513delCTT---11AY.30.00001
S513L513ICttAtt11AY.3.10.000085
S513L513FCttTtt11AY.3.10.000085
S513L513delCTT---11AY.330.000067
S513L513FCttTtt11AY.340.000097
S513L513LctTctC11AY.390.000025
S513L513ICttAtt11AY.39.10.00004
S513L513LctTctC11AY.39.10.00004
S513L513LctTctC11AY.40.000002
S513L513delCTT---11AY.40.000002
S513L513PcTtcCt11AY.4.20.000022
S513L513LctTctC11AY.4.20.000022
S513L513del1CTT-CS11AY.420.00004
S513L513VCtTGtC11AY.420.00004
S513L513DCTtGAt11AY.430.000004
S513L513del2CTt--t11AY.430.000004
S513L513del1Ctt-tt11AY.430.000004
S513L513ICttAtt11AY.440.000006
S513L513PcTtcCt11AY.440.000006
S513L513RcTTcGG11AY.440.000006
S513L513SCTTTCG11AY.450.000122
S513L513FCttTtt11AY.46.60.000072
S513L513VCtTGtG11AY.46.60.000072
S513L513FCttTtt11AY.470.000031
S513L513SCTtAGt11AY.470.000031
S513L513PcTtcCt11AY.50.000021
S513L513ICttAtt11AY.50.000021
S513L513FCttTtt11AY.5.30.000337
S513L513FCttTtt11AY.5.40.000277
S513L513FCttTtt11AY.540.000095
S513L513FCttTtt11AY.60.000041
S513L513PcTtcCt11AY.620.000436
S513L513delCTT---11AY.670.000464
S513L513FCttTtt11AY.740.000116
S513L513delCTT---11AY.750.000056
S513L513delCTT---11AY.75.10.00018
S513L513SCTTTCG11AY.840.000437
S513L513FCttTtt11AY.870.000833
S513L513del2CTt--t11AY.9.20.000037
S513L513PcTtcCt11AY.9.20.000037
S513L513FCttTtt11AY.900.000684
S513L513FCttTtt11AY.930.000273
S513L513PcTtcCt11AY.980.000079
S513L513FCttTtt11AY.980.000079
S513L513del2CTT--G11AY.990.001049
S513L513delCTT---11AY.990.001049
S513L513FCttTtt11AY.99.20.000092
S513L513LctTctG11AZ.30.00152
S513L513ICttAtt11B0.000128
S513L513LctTctC11B.10.000009
S513L513del1cTtc-t11B.10.000009
S513L513RcTtcGt11B.10.000009
S513L513delCTT---11B.1.10.000018
S513L513FCttTtt11B.1.10.000018
S513L513PcTtcCt11B.1.1.10.000327
S513L513FCttTtt11B.1.1.1690.018182
S513L513LctTctG11B.1.1.1980.001468
S513L513LctTctC11B.1.1.2220.000204
S513L513FCttTtt11B.1.1.2300.009174
S513L513LctTctG11B.1.1.250.000569
S513L513FCttTtt11B.1.1.2550.00303
S513L513LctTctC11B.1.1.280.000311
S513L513delCTT---11B.1.1.3260.001761
S513L513delCTT---11B.1.1.390.00051
S513L513LctTctC11B.1.1.390.00051
S513L513FCttTtt11B.1.1.4160.000905
S513L513del1cTTc-N11B.1.1.70.000001
S513L513SCTtAGt11B.1.1.70.000001
S513L513VCttGtt11B.1.1.700.000341
S513L513ICttAtt11B.1.1600.000031
S513L513FCttTtt11B.1.160.200.008929
S513L513VCttGtt11B.1.1770.000013
S513L513PcTtcCt11B.1.1770.000013
S513L513LctTctC11B.1.177.310.011494
S513L513LctTctC11B.1.177.40.000211
S513L513FCttTtt11B.1.177.600.000218
S513L513PcTtcCt11B.1.177.730.000566
S513L513FCttTtt11B.1.177.730.000566
S513L513PcTtcCt11B.1.20.000009
S513L513ICttAtt11B.1.20.000009
S513L513FCttTtt11B.1.2210.000071
S513L513FCttTtt11B.1.2340.000132
S513L513PcTtcCt11B.1.2430.00007
S513L513RcTTcGG11B.1.2430.00007
S513L513MCtTAtG11B.1.2580.000067
S513L513FCttTtt11B.1.3510.00003
S513L513TCTtACt11B.1.3510.00003
S513L513delCTT---11B.1.3510.00003
S513L513del1cTtc-t11B.1.3770.004566
S513L513del1cTtc-t11B.1.3960.000706
S513L513PcTtcCt11B.1.4040.001302
S513L513delCTT---11B.1.4150.014286
S513L513FCttTtt11B.1.4290.000024
S513L513delCTT---11B.1.5260.000024
S513L513PcTtcCt11B.1.5730.006098
S513L513FCttTtt11B.1.5760.000907
S513L513PcTtcCt11B.1.5950.000261
S513L513LctTctG11B.1.5960.000087
S513L513del1cTtc-t11B.1.5960.000087
S513L513FCttTtt11B.1.617.10.000129
S513L513del1cTTc-N11B.1.617.20.000004
S513L513delCTT---11B.1.6200.000946
S513L513LctTctC11B.1.6210.000089
S513L513FCttTtt11B.1.621.10.000506
S513L513ICttAtt11B.1.6250.002353
S513L513LctTctC11B.1.6370.000073
S513L513FCttTtt11B.1.6370.000073
S513L513del1cTtc-t11B.1.6370.000073
S513L513delCTT---11B.340.013699
S513L513FCttTtt11B.400.000364
S513L513FCttTtt11C.260.007353
S513L513delCTT---11C.370.000116
S513L513FCttTtt11P.10.000016
S513L513LctTctC11P.10.000016
S513L513LctTctG11P.1.150.000232
S513L513ICttAtt11P.1.150.000232
S513L513LctTctC11P.1.160.000374
S513L513FCttTtt11Q.10.000126
S513L513LctTctG11Q.30.000145
S513L513FCttTtt11Q.60.006623

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.