CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 51

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	51	T51I		nonsyn	aCt	aTt	6429	6427	0.999689	21713-21715
S	51	T51I		nonsyn	aCT	aTC	6429	2	0.00031109	21713-21715
S	51	T51T		syn	acT	acG	742	427	0.575472	21713-21715
S	51	T51T		syn	acT	acC	742	179	0.24124	21713-21715
S	51	T51T		syn	acT	acA	742	136	0.183288	21713-21715
S	51	T51del		del	ACT	---	170	170	1	21713-21715
S	51	T51del1		del	acT	ac-	115	113	0.982609	21713-21715
S	51	T51del1		del	aCt	a-t	115	2	0.0173913	21713-21715
S	51	T51A		nonsyn	Act	Gct	56	56	1	21713-21715
S	51	T51S		nonsyn	aCt	aGt	21	12	0.571429	21713-21715
S	51	T51S		nonsyn	Act	Tct	21	9	0.428571	21713-21715
S	51	T51N		nonsyn	aCt	aAt	14	14	1	21713-21715
S	51	T51del2		del	ACt	--t	4	2	0.5	21713-21715
S	51	T51del2		del	aCT	a--	4	2	0.5	21713-21715
S	51	T51P		nonsyn	Act	Cct	2	2	1	21713-21715

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	51	T51I	aCt	aTt	6427	6429	All	0.001229
S	51	T51I	aCT	aTC	2	6429	All	0
S	51	T51I	aCt	aTt	4295	4295	AY.120	0.159683
S	51	T51I	aCt	aTt	825	825	B.1.177.62	0.983313
S	51	T51T	acT	acG	427	742	All	0.000082
S	51	T51T	acT	acC	179	742	All	0.000034
S	51	T51T	acT	acA	136	742	All	0.000026
S	51	T51I	aCt	aTt	234	234	B.1.177	0.003081
S	51	T51T	acT	acG	139	197	B.1.617.2	0.000523
S	51	T51T	acT	acA	50	197	B.1.617.2	0.000188
S	51	T51T	acT	acC	8	197	B.1.617.2	0.00003
S	51	T51del	ACT	---	170	170	All	0.000033
S	51	T51T	acT	acG	160	168	AY.44	0.000974
S	51	T51T	acT	acC	5	168	AY.44	0.00003
S	51	T51T	acT	acA	3	168	AY.44	0.000018
S	51	T51T	acT	acG	82	145	B.1.1.7	0.000073
S	51	T51T	acT	acA	36	145	B.1.1.7	0.000032
S	51	T51T	acT	acC	27	145	B.1.1.7	0.000024
S	51	T51I	aCt	aTt	137	137	B.1.617.2	0.000516
S	51	T51I	aCt	aTt	116	116	B.1.1.7	0.000104
S	51	T51del1	acT	ac-	113	115	All	0.000022
S	51	T51del1	aCt	a-t	2	115	All	0
S	51	T51I	aCt	aTt	106	106	AY.4	0.000165
S	51	T51I	aCt	aTt	82	82	AY.43	0.000363
S	51	T51T	acT	acC	43	68	AY.4	0.000067
S	51	T51T	acT	acA	18	68	AY.4	0.000028
S	51	T51T	acT	acG	7	68	AY.4	0.000011
S	51	T51A	Act	Gct	56	56	All	0.000011
S	51	T51del	ACT	---	41	41	B.1.1.7	0.000037
S	51	T51I	aCt	aTt	40	40	AY.44	0.000243
S	51	T51I	aCt	aTt	35	35	AY.103	0.000217
S	51	T51I	aCt	aTt	35	35	B.1	0.000321
S	51	T51I	aCt	aTt	29	29	AY.120.2	0.037275
S	51	T51del1	acT	ac-	28	28	AY.43	0.000124
S	51	T51I	aCt	aTt	28	28	B.1.351	0.000832
S	51	T51I	aCt	aTt	27	27	B.1.1	0.00049
S	51	T51I	aCt	aTt	27	27	B.1.1.70	0.009209
S	51	T51I	aCt	aTt	24	24	B.1.526	0.000564
S	51	T51S	aCt	aGt	12	21	All	0.000002
S	51	T51S	Act	Tct	9	21	All	0.000002
S	51	T51T	acT	acA	12	21	AY.25	0.000072
S	51	T51T	acT	acC	7	21	AY.25	0.000042
S	51	T51T	acT	acG	2	21	AY.25	0.000012
S	51	T51I	aCt	aTt	21	21	B.1.177.61	0.913043
S	51	T51A	Act	Gct	19	19	B.1.525	0.00215
S	51	T51T	acT	acC	18	18	B.1.351	0.000535
S	51	T51del	ACT	---	15	15	AY.43	0.000066
S	51	T51N	aCt	aAt	14	14	All	0.000003
S	51	T51I	aCt	aTt	14	14	AY.102	0.000371
S	51	T51I	aCt	aTt	14	14	AY.46.3	0.013072
S	51	T51I	aCt	aTt	14	14	AY.6	0.000576
S	51	T51I	aCt	aTt	14	14	C.36.1	0.058091
S	51	T51I	aCt	aTt	13	13	B.1.499	0.013655
S	51	T51I	aCt	aTt	12	12	AY.25	0.000072
S	51	T51I	aCt	aTt	12	12	B.1.2	0.000106
S	51	T51I	aCt	aTt	12	12	B.1.525	0.001358
S	51	T51del	ACT	---	11	11	AY.4	0.000017
S	51	T51I	aCt	aTt	11	11	AY.5	0.000227
S	51	T51I	aCt	aTt	11	11	B.1.1.519	0.000437
S	51	T51I	aCt	aTt	11	11	B.1.177.21	0.000841
S	51	T51del	ACT	---	10	10	AY.25	0.00006
S	51	T51I	aCt	aTt	10	10	AY.3	0.000099
S	51	T51I	aCt	aTt	10	10	AY.42	0.000402
S	51	T51I	aCt	aTt	9	9	AY.46.5	0.001786
S	51	T51T	acT	acG	9	9	B.1.1.70	0.00307
S	51	T51del	ACT	---	9	9	B.1.177	0.000119
S	51	T51I	aCt	aTt	9	9	B.1.570	0.026471
S	51	T51T	acT	acC	8	8	AY.103	0.00005
S	51	T51S	Act	Tct	8	8	AY.44	0.000049
S	51	T51T	acT	acA	8	8	AY.98	0.000632
S	51	T51T	acT	acC	7	8	B.1.2	0.000062
S	51	T51T	acT	acA	1	8	B.1.2	0.000009
S	51	T51I	aCt	aTt	8	8	B.1.429	0.000188
S	51	T51I	aCt	aTt	7	7	AY.119	0.000247
S	51	T51I	aCt	aTt	7	7	AY.13	0.001127
S	51	T51I	aCt	aTt	7	7	AY.39	0.000173
S	51	T51del	ACT	---	7	7	AY.4.5	0.000752
S	51	T51T	acT	acC	7	7	AY.5	0.000145
S	51	T51del1	acT	ac-	7	7	B.1	0.000064
S	51	T51del1	acT	ac-	7	7	B.1.1	0.000127
S	51	T51T	acT	acG	7	7	P.1.8	0.033493
S	51	T51T	acT	acC	4	6	AY.119	0.000141
S	51	T51T	acT	acA	1	6	AY.119	0.000035
S	51	T51T	acT	acG	1	6	AY.119	0.000035
S	51	T51del1	acT	ac-	6	6	AY.23	0.000418
S	51	T51T	acT	acC	3	6	AY.43	0.000013
S	51	T51T	acT	acG	2	6	AY.43	0.000009
S	51	T51T	acT	acA	1	6	AY.43	0.000004
S	51	T51del1	acT	ac-	6	6	B.1.177	0.000079
S	51	T51I	aCt	aTt	6	6	B.1.221	0.000426
S	51	T51I	aCt	aTt	6	6	C.16	0.006363
S	51	T51S	aCt	aGt	5	5	AY.100	0.00023
S	51	T51del	ACT	---	5	5	AY.102	0.000133
S	51	T51I	aCt	aTt	5	5	AY.116	0.001434
S	51	T51I	aCt	aTt	5	5	AY.20	0.000194
S	51	T51I	aCt	aTt	5	5	AY.29	0.000079
S	51	T51del	ACT	---	5	5	AY.33	0.000334
S	51	T51del1	acT	ac-	5	5	AY.4	0.000008
S	51	T51A	Act	Gct	5	5	AY.44	0.00003
S	51	T51del	ACT	---	5	5	B.1.1	0.000091
S	51	T51A	Act	Gct	5	5	B.1.1.7	0.000004
S	51	T51I	aCt	aTt	5	5	B.1.258	0.000333
S	51	T51T	acT	acC	5	5	B.1.427	0.000252
S	51	T51T	acT	acC	4	4		0.222222
S	51	T51I	aCT	aTC	2	4		0.111111
S	51	T51I	aCt	aTt	2	4		0.111111
S	51	T51del2	aCT	a--	2	4	All	0
S	51	T51del2	ACt	--t	2	4	All	0
S	51	T51A	Act	Gct	4	4	AY.102	0.000106
S	51	T51del1	acT	ac-	4	4	AY.42	0.000161
S	51	T51del1	acT	ac-	4	4	AY.44	0.000024
S	51	T51del1	acT	ac-	4	4	AY.46	0.000416
S	51	T51I	aCt	aTt	4	4	AY.46	0.000416
S	51	T51del1	acT	ac-	4	4	B.1.1.7	0.000004
S	51	T51del	ACT	---	4	4	B.1.617.2	0.000015
S	51	T51A	Act	Gct	4	4	B.1.621.1	0.002023
S	51	T51I	aCt	aTt	4	4	B.1.637	0.000292
S	51	T51I	aCt	aTt	4	4	P.1	0.000063
S	51	T51del	ACT	---	3	3	AY.101	0.001471
S	51	T51I	aCt	aTt	3	3	AY.26	0.000085
S	51	T51I	aCt	aTt	3	3	AY.33	0.0002
S	51	T51T	acT	acG	3	3	AY.35	0.000699
S	51	T51T	acT	acC	3	3	AY.36	0.000445
S	51	T51T	acT	acC	3	3	AY.48	0.001395
S	51	T51del	ACT	---	3	3	AY.5	0.000062
S	51	T51I	aCt	aTt	3	3	AY.98.1	0.000145
S	51	T51del1	acT	ac-	3	3	AY.98.1	0.000145
S	51	T51A	Act	Gct	3	3	B.1	0.000027
S	51	T51del	ACT	---	3	3	B.1	0.000027
S	51	T51I	aCt	aTt	3	3	B.1.160	0.000094
S	51	T51del1	acT	ac-	3	3	B.1.160	0.000094
S	51	T51I	aCt	aTt	3	3	B.1.213	0.044776
S	51	T51T	acT	acC	3	3	B.1.234	0.000396
S	51	T51I	aCt	aTt	3	3	B.1.427	0.000151
S	51	T51I	aCt	aTt	3	3	B.1.575	0.00091
S	51	T51I	aCt	aTt	3	3	B.1.596	0.000261
S	51	T51del1	acT	ac-	3	3	B.1.617.2	0.000011
S	51	T51S	aCt	aGt	3	3	B.1.617.2	0.000011
S	51	T51T	acT	acG	1	3	P.1	0.000016
S	51	T51T	acT	acC	1	3	P.1	0.000016
S	51	T51T	acT	acA	1	3	P.1	0.000016
S	51	T51I	aCt	aTt	2	2	AE.8	0.000978
S	51	T51P	Act	Cct	2	2	All	0
S	51	T51del	ACT	---	2	2	AY.103	0.000012
S	51	T51del1	acT	ac-	2	2	AY.111	0.000366
S	51	T51T	acT	acG	2	2	AY.117	0.000169
S	51	T51I	aCt	aTt	2	2	AY.117	0.000169
S	51	T51I	aCt	aTt	2	2	AY.118	0.000125
S	51	T51del	ACT	---	2	2	AY.120	0.000074
S	51	T51I	aCt	aTt	2	2	AY.14	0.000176
S	51	T51I	aCt	aTt	2	2	AY.16.1	0.00094
S	51	T51T	acT	acC	2	2	AY.23	0.000139
S	51	T51A	Act	Gct	2	2	AY.25	0.000012
S	51	T51T	acT	acC	2	2	AY.3	0.00002
S	51	T51del1	acT	ac-	2	2	AY.34	0.000194
S	51	T51del	ACT	---	2	2	AY.39	0.000049
S	51	T51I	aCt	aTt	2	2	AY.4.2	0.000043
S	51	T51del	ACT	---	2	2	AY.42	0.00008
S	51	T51del	ACT	---	2	2	AY.44	0.000012
S	51	T51A	Act	Gct	2	2	AY.47	0.000062
S	51	T51del1	acT	ac-	2	2	AY.5	0.000041
S	51	T51I	aCt	aTt	2	2	AY.53	0.000575
S	51	T51I	aCt	aTt	2	2	AY.59	0.001059
S	51	T51I	aCt	aTt	2	2	AY.61	0.00021
S	51	T51I	aCt	aTt	2	2	AY.68	0.000547
S	51	T51I	aCt	aTt	2	2	AY.75	0.000112
S	51	T51I	aCt	aTt	2	2	AY.9.2	0.000073
S	51	T51I	aCt	aTt	2	2	B	0.000256
S	51	T51T	acT	acG	2	2	B.1	0.000018
S	51	T51N	aCt	aAt	2	2	B.1	0.000018
S	51	T51I	aCt	aTt	2	2	B.1.1.28	0.000622
S	51	T51del1	acT	ac-	2	2	B.1.1.39	0.001019
S	51	T51del	ACT	---	2	2	B.1.160	0.000062
S	51	T51T	acT	acG	2	2	B.1.160	0.000062
S	51	T51T	acT	acG	1	2	B.1.177	0.000013
S	51	T51T	acT	acC	1	2	B.1.177	0.000013
S	51	T51T	acT	acC	2	2	B.1.221.1	0.005814
S	51	T51T	acT	acC	2	2	B.1.243	0.000139
S	51	T51I	aCt	aTt	2	2	B.1.36	0.000292
S	51	T51I	aCt	aTt	2	2	B.1.36.16	0.002849
S	51	T51del1	acT	ac-	2	2	B.1.378	0.013699
S	51	T51T	acT	acC	2	2	B.1.429	0.000047
S	51	T51del1	aCt	a-t	2	2	B.1.627	0.00404
S	51	T51I	aCt	aTt	2	2	C.36	0.001821
S	51	T51I	aCt	aTt	2	2	P.1.7	0.000639
S	51	T51I	aCt	aTt	1	1	A.2.5	0.000499
S	51	T51I	aCt	aTt	1	1	A.23.1	0.000704
S	51	T51del	ACT	---	1	1	AD.2	0.000219
S	51	T51I	aCt	aTt	1	1	AD.2	0.000219
S	51	T51T	acT	acG	1	1	AY.102	0.000027
S	51	T51A	Act	Gct	1	1	AY.103	0.000006
S	51	T51del1	acT	ac-	1	1	AY.103	0.000006
S	51	T51I	aCt	aTt	1	1	AY.107	0.000466
S	51	T51del	ACT	---	1	1	AY.108	0.001103
S	51	T51N	aCt	aAt	1	1	AY.111	0.000183
S	51	T51del	ACT	---	1	1	AY.113	0.000142
S	51	T51del1	acT	ac-	1	1	AY.117	0.000085
S	51	T51I	aCt	aTt	1	1	AY.120.2.1	0.000498
S	51	T51T	acT	acG	1	1	AY.16.1	0.00047
S	51	T51del	ACT	---	1	1	AY.19	0.00114
S	51	T51del	ACT	---	1	1	AY.20	0.000039
S	51	T51del1	acT	ac-	1	1	AY.21	0.001898
S	51	T51I	aCt	aTt	1	1	AY.23	0.00007
S	51	T51A	Act	Gct	1	1	AY.23	0.00007
S	51	T51del	ACT	---	1	1	AY.23	0.00007
S	51	T51T	acT	acC	1	1	AY.23.1	0.000417
S	51	T51N	aCt	aAt	1	1	AY.25	0.000006
S	51	T51N	aCt	aAt	1	1	AY.26	0.000028
S	51	T51del	ACT	---	1	1	AY.26	0.000028
S	51	T51del1	acT	ac-	1	1	AY.26	0.000028
S	51	T51T	acT	acC	1	1	AY.29	0.000016
S	51	T51N	aCt	aAt	1	1	AY.29	0.000016
S	51	T51I	aCt	aTt	1	1	AY.30	0.000396
S	51	T51del1	acT	ac-	1	1	AY.32	0.000532
S	51	T51T	acT	acC	1	1	AY.32	0.000532
S	51	T51T	acT	acA	1	1	AY.33	0.000067
S	51	T51del1	acT	ac-	1	1	AY.34.1	0.00051
S	51	T51del	ACT	---	1	1	AY.34.1	0.00051
S	51	T51I	aCt	aTt	1	1	AY.35	0.000233
S	51	T51I	aCt	aTt	1	1	AY.38	0.000499
S	51	T51T	acT	acC	1	1	AY.39	0.000025
S	51	T51del1	acT	ac-	1	1	AY.39	0.000025
S	51	T51I	aCt	aTt	1	1	AY.39.1	0.00004
S	51	T51del1	acT	ac-	1	1	AY.39.1	0.00004
S	51	T51I	aCt	aTt	1	1	AY.39.1.1	0.000725
S	51	T51N	aCt	aAt	1	1	AY.4	0.000002
S	51	T51T	acT	acC	1	1	AY.4.2	0.000022
S	51	T51del1	acT	ac-	1	1	AY.4.5	0.000107
S	51	T51I	aCt	aTt	1	1	AY.40	0.000964
S	51	T51T	acT	acC	1	1	AY.42	0.00004
S	51	T51S	aCt	aGt	1	1	AY.43	0.000004
S	51	T51A	Act	Gct	1	1	AY.43	0.000004
S	51	T51del2	ACt	--t	1	1	AY.44	0.000006
S	51	T51T	acT	acG	1	1	AY.46	0.000104
S	51	T51T	acT	acG	1	1	AY.46.6	0.000072
S	51	T51I	aCt	aTt	1	1	AY.47	0.000031
S	51	T51T	acT	acC	1	1	AY.5.3	0.000337
S	51	T51del	ACT	---	1	1	AY.5.3	0.000337
S	51	T51I	aCt	aTt	1	1	AY.54	0.000095
S	51	T51N	aCt	aAt	1	1	AY.6	0.000041
S	51	T51del	ACT	---	1	1	AY.60	0.000938
S	51	T51I	aCt	aTt	1	1	AY.62	0.000436
S	51	T51I	aCt	aTt	1	1	AY.63	0.000387
S	51	T51del	ACT	---	1	1	AY.68	0.000274
S	51	T51I	aCt	aTt	1	1	AY.7	0.000196
S	51	T51I	aCt	aTt	1	1	AY.70	0.000209
S	51	T51del	ACT	---	1	1	AY.72	0.001361
S	51	T51T	acT	acA	1	1	AY.73	0.000665
S	51	T51T	acT	acG	1	1	AY.74	0.000116
S	51	T51A	Act	Gct	1	1	AY.74	0.000116
S	51	T51I	aCt	aTt	1	1	AY.74	0.000116
S	51	T51del1	acT	ac-	1	1	AY.75	0.000056
S	51	T51T	acT	acG	1	1	AY.75	0.000056
S	51	T51del	ACT	---	1	1	AY.78	0.001541
S	51	T51T	acT	acC	1	1	AY.79	0.001211
S	51	T51del	ACT	---	1	1	AY.85	0.000427
S	51	T51del	ACT	---	1	1	AY.9	0.000068
S	51	T51del1	acT	ac-	1	1	AY.9	0.000068
S	51	T51I	aCt	aTt	1	1	AY.9	0.000068
S	51	T51T	acT	acG	1	1	AY.9	0.000068
S	51	T51del1	acT	ac-	1	1	AY.9.2	0.000037
S	51	T51S	Act	Tct	1	1	AY.96	0.002075
S	51	T51I	aCt	aTt	1	1	AY.99	0.001049
S	51	T51del2	ACt	--t	1	1	B.1	0.000009
S	51	T51del2	aCT	a--	1	1	B.1.1	0.000018
S	51	T51T	acT	acC	1	1	B.1.1	0.000018
S	51	T51N	aCt	aAt	1	1	B.1.1	0.000018
S	51	T51A	Act	Gct	1	1	B.1.1	0.000018
S	51	T51I	aCt	aTt	1	1	B.1.1.152	0.04
S	51	T51I	aCt	aTt	1	1	B.1.1.214	0.000055
S	51	T51I	aCt	aTt	1	1	B.1.1.25	0.000569
S	51	T51I	aCt	aTt	1	1	B.1.1.263	0.001558
S	51	T51I	aCt	aTt	1	1	B.1.1.284	0.000107
S	51	T51I	aCt	aTt	1	1	B.1.1.294	0.001266
S	51	T51del	ACT	---	1	1	B.1.1.306	0.000438
S	51	T51del	ACT	---	1	1	B.1.1.311	0.000358
S	51	T51del	ACT	---	1	1	B.1.1.312	0.001912
S	51	T51del	ACT	---	1	1	B.1.1.317	0.000412
S	51	T51I	aCt	aTt	1	1	B.1.1.317	0.000412
S	51	T51I	aCt	aTt	1	1	B.1.1.326	0.001761
S	51	T51S	aCt	aGt	1	1	B.1.1.33	0.000421
S	51	T51A	Act	Gct	1	1	B.1.1.33	0.000421
S	51	T51S	aCt	aGt	1	1	B.1.1.349	0.010309
S	51	T51del1	acT	ac-	1	1	B.1.1.372	0.000689
S	51	T51N	aCt	aAt	1	1	B.1.1.39	0.00051
S	51	T51I	aCt	aTt	1	1	B.1.1.434	0.000349
S	51	T51N	aCt	aAt	1	1	B.1.1.7	0.000001
S	51	T51P	Act	Cct	1	1	B.1.1.7	0.000001
S	51	T51S	aCt	aGt	1	1	B.1.1.7	0.000001
S	51	T51del	ACT	---	1	1	B.1.1.70	0.000341
S	51	T51T	acT	acC	1	1	B.1.160.18	0.007299
S	51	T51del2	aCT	a--	1	1	B.1.177.15	0.000631
S	51	T51I	aCt	aTt	1	1	B.1.177.15	0.000631
S	51	T51del	ACT	---	1	1	B.1.177.17	0.000821
S	51	T51del	ACT	---	1	1	B.1.177.19	0.001431
S	51	T51del	ACT	---	1	1	B.1.177.4	0.000211
S	51	T51I	aCt	aTt	1	1	B.1.177.4	0.000211
S	51	T51del1	acT	ac-	1	1	B.1.177.44	0.000519
S	51	T51I	aCt	aTt	1	1	B.1.177.5	0.001242
S	51	T51del1	acT	ac-	1	1	B.1.177.51	0.004566
S	51	T51del	ACT	---	1	1	B.1.177.56	0.000668
S	51	T51I	aCt	aTt	1	1	B.1.177.6	0.000977
S	51	T51del1	acT	ac-	1	1	B.1.177.63	0.002703
S	51	T51I	aCt	aTt	1	1	B.1.177.65	0.000665
S	51	T51I	aCt	aTt	1	1	B.1.177.73	0.000566
S	51	T51del1	acT	ac-	1	1	B.1.177.73	0.000566
S	51	T51del	ACT	---	1	1	B.1.177.83	0.001481
S	51	T51del	ACT	---	1	1	B.1.179	0.003759
S	51	T51A	Act	Gct	1	1	B.1.2	0.000009
S	51	T51del	ACT	---	1	1	B.1.2	0.000009
S	51	T51I	aCt	aTt	1	1	B.1.234	0.000132
S	51	T51T	acT	acA	1	1	B.1.236	0.002053
S	51	T51I	aCt	aTt	1	1	B.1.240	0.000216
S	51	T51I	aCt	aTt	1	1	B.1.243	0.00007
S	51	T51del1	acT	ac-	1	1	B.1.258.17	0.000104
S	51	T51I	aCt	aTt	1	1	B.1.260	0.003344
S	51	T51P	Act	Cct	1	1	B.1.3	0.002618
S	51	T51A	Act	Gct	1	1	B.1.351	0.00003
S	51	T51I	aCt	aTt	1	1	B.1.351.3	0.000876
S	51	T51A	Act	Gct	1	1	B.1.36	0.000146
S	51	T51N	aCt	aAt	1	1	B.1.36.27	0.000763
S	51	T51del	ACT	---	1	1	B.1.36.29	0.000517
S	51	T51I	aCt	aTt	1	1	B.1.362	0.001541
S	51	T51T	acT	acC	1	1	B.1.367	0.000792
S	51	T51del1	acT	ac-	1	1	B.1.375	0.00082
S	51	T51I	aCt	aTt	1	1	B.1.404	0.001302
S	51	T51T	acT	acC	1	1	B.1.405	0.012346
S	51	T51T	acT	acA	1	1	B.1.409	0.000781
S	51	T51del	ACT	---	1	1	B.1.427	0.00005
S	51	T51A	Act	Gct	1	1	B.1.429	0.000024
S	51	T51del	ACT	---	1	1	B.1.470	0.001404
S	51	T51I	aCt	aTt	1	1	B.1.524	0.001406
S	51	T51del	ACT	---	1	1	B.1.526	0.000024
S	51	T51I	aCt	aTt	1	1	B.1.532	0.006211
S	51	T51I	aCt	aTt	1	1	B.1.617.1	0.000129
S	51	T51A	Act	Gct	1	1	B.1.617.2	0.000004
S	51	T51N	aCt	aAt	1	1	B.1.617.2	0.000004
S	51	T51del	ACT	---	1	1	B.1.620	0.000946
S	51	T51I	aCt	aTt	1	1	B.1.621	0.000089
S	51	T51del	ACT	---	1	1	B.1.621	0.000089
S	51	T51I	aCt	aTt	1	1	B.1.630	0.005236
S	51	T51A	Act	Gct	1	1	B.6.6	0.000889
S	51	T51del	ACT	---	1	1	C.36	0.000911
S	51	T51I	aCt	aTt	1	1	C.36.3	0.000567
S	51	T51I	aCt	aTt	1	1	C.37	0.000116
S	51	T51I	aCt	aTt	1	1	C.37.1	0.002618
S	51	T51I	aCt	aTt	1	1	D.2	0.000075
S	51	T51N	aCt	aAt	1	1	P.1	0.000016
S	51	T51del	ACT	---	1	1	P.1	0.000016
S	51	T51I	aCt	aTt	1	1	P.1.14	0.000048
S	51	T51T	acT	acA	1	1	P.1.15	0.000232
S	51	T51del	ACT	---	1	1	Q.1	0.000126
S	51	T51I	aCt	aTt	1	1	Q.1	0.000126
S	51	T51del	ACT	---	1	1	Q.2	0.000613
S	51	T51I	aCt	aTt	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.