CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 51

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S51T51InonsynaCtaTt642964270.99968921713-21715
S51T51InonsynaCTaTC642920.0003110921713-21715
S51T51TsynacTacG7424270.57547221713-21715
S51T51TsynacTacC7421790.2412421713-21715
S51T51TsynacTacA7421360.18328821713-21715
S51T51deldelACT---170170121713-21715
S51T51del1delacTac-1151130.98260921713-21715
S51T51del1delaCta-t11520.017391321713-21715
S51T51AnonsynActGct5656121713-21715
S51T51SnonsynaCtaGt21120.57142921713-21715
S51T51SnonsynActTct2190.42857121713-21715
S51T51NnonsynaCtaAt1414121713-21715
S51T51del2delACt--t420.521713-21715
S51T51del2delaCTa--420.521713-21715
S51T51PnonsynActCct22121713-21715

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S51T51IaCtaTt64276429All0.001229
S51T51IaCTaTC26429All0
S51T51IaCtaTt42954295AY.1200.159683
S51T51IaCtaTt825825B.1.177.620.983313
S51T51TacTacG427742All0.000082
S51T51TacTacC179742All0.000034
S51T51TacTacA136742All0.000026
S51T51IaCtaTt234234B.1.1770.003081
S51T51TacTacG139197B.1.617.20.000523
S51T51TacTacA50197B.1.617.20.000188
S51T51TacTacC8197B.1.617.20.00003
S51T51delACT---170170All0.000033
S51T51TacTacG160168AY.440.000974
S51T51TacTacC5168AY.440.00003
S51T51TacTacA3168AY.440.000018
S51T51TacTacG82145B.1.1.70.000073
S51T51TacTacA36145B.1.1.70.000032
S51T51TacTacC27145B.1.1.70.000024
S51T51IaCtaTt137137B.1.617.20.000516
S51T51IaCtaTt116116B.1.1.70.000104
S51T51del1acTac-113115All0.000022
S51T51del1aCta-t2115All0
S51T51IaCtaTt106106AY.40.000165
S51T51IaCtaTt8282AY.430.000363
S51T51TacTacC4368AY.40.000067
S51T51TacTacA1868AY.40.000028
S51T51TacTacG768AY.40.000011
S51T51AActGct5656All0.000011
S51T51delACT---4141B.1.1.70.000037
S51T51IaCtaTt4040AY.440.000243
S51T51IaCtaTt3535AY.1030.000217
S51T51IaCtaTt3535B.10.000321
S51T51IaCtaTt2929AY.120.20.037275
S51T51del1acTac-2828AY.430.000124
S51T51IaCtaTt2828B.1.3510.000832
S51T51IaCtaTt2727B.1.10.00049
S51T51IaCtaTt2727B.1.1.700.009209
S51T51IaCtaTt2424B.1.5260.000564
S51T51SaCtaGt1221All0.000002
S51T51SActTct921All0.000002
S51T51TacTacA1221AY.250.000072
S51T51TacTacC721AY.250.000042
S51T51TacTacG221AY.250.000012
S51T51IaCtaTt2121B.1.177.610.913043
S51T51AActGct1919B.1.5250.00215
S51T51TacTacC1818B.1.3510.000535
S51T51delACT---1515AY.430.000066
S51T51NaCtaAt1414All0.000003
S51T51IaCtaTt1414AY.1020.000371
S51T51IaCtaTt1414AY.46.30.013072
S51T51IaCtaTt1414AY.60.000576
S51T51IaCtaTt1414C.36.10.058091
S51T51IaCtaTt1313B.1.4990.013655
S51T51IaCtaTt1212AY.250.000072
S51T51IaCtaTt1212B.1.20.000106
S51T51IaCtaTt1212B.1.5250.001358
S51T51delACT---1111AY.40.000017
S51T51IaCtaTt1111AY.50.000227
S51T51IaCtaTt1111B.1.1.5190.000437
S51T51IaCtaTt1111B.1.177.210.000841
S51T51delACT---1010AY.250.00006
S51T51IaCtaTt1010AY.30.000099
S51T51IaCtaTt1010AY.420.000402
S51T51IaCtaTt99AY.46.50.001786
S51T51TacTacG99B.1.1.700.00307
S51T51delACT---99B.1.1770.000119
S51T51IaCtaTt99B.1.5700.026471
S51T51TacTacC88AY.1030.00005
S51T51SActTct88AY.440.000049
S51T51TacTacA88AY.980.000632
S51T51TacTacC78B.1.20.000062
S51T51TacTacA18B.1.20.000009
S51T51IaCtaTt88B.1.4290.000188
S51T51IaCtaTt77AY.1190.000247
S51T51IaCtaTt77AY.130.001127
S51T51IaCtaTt77AY.390.000173
S51T51delACT---77AY.4.50.000752
S51T51TacTacC77AY.50.000145
S51T51del1acTac-77B.10.000064
S51T51del1acTac-77B.1.10.000127
S51T51TacTacG77P.1.80.033493
S51T51TacTacC46AY.1190.000141
S51T51TacTacA16AY.1190.000035
S51T51TacTacG16AY.1190.000035
S51T51del1acTac-66AY.230.000418
S51T51TacTacC36AY.430.000013
S51T51TacTacG26AY.430.000009
S51T51TacTacA16AY.430.000004
S51T51del1acTac-66B.1.1770.000079
S51T51IaCtaTt66B.1.2210.000426
S51T51IaCtaTt66C.160.006363
S51T51SaCtaGt55AY.1000.00023
S51T51delACT---55AY.1020.000133
S51T51IaCtaTt55AY.1160.001434
S51T51IaCtaTt55AY.200.000194
S51T51IaCtaTt55AY.290.000079
S51T51delACT---55AY.330.000334
S51T51del1acTac-55AY.40.000008
S51T51AActGct55AY.440.00003
S51T51delACT---55B.1.10.000091
S51T51AActGct55B.1.1.70.000004
S51T51IaCtaTt55B.1.2580.000333
S51T51TacTacC55B.1.4270.000252
S51T51TacTacC440.222222
S51T51IaCTaTC240.111111
S51T51IaCtaTt240.111111
S51T51del2aCTa--24All0
S51T51del2ACt--t24All0
S51T51AActGct44AY.1020.000106
S51T51del1acTac-44AY.420.000161
S51T51del1acTac-44AY.440.000024
S51T51del1acTac-44AY.460.000416
S51T51IaCtaTt44AY.460.000416
S51T51del1acTac-44B.1.1.70.000004
S51T51delACT---44B.1.617.20.000015
S51T51AActGct44B.1.621.10.002023
S51T51IaCtaTt44B.1.6370.000292
S51T51IaCtaTt44P.10.000063
S51T51delACT---33AY.1010.001471
S51T51IaCtaTt33AY.260.000085
S51T51IaCtaTt33AY.330.0002
S51T51TacTacG33AY.350.000699
S51T51TacTacC33AY.360.000445
S51T51TacTacC33AY.480.001395
S51T51delACT---33AY.50.000062
S51T51IaCtaTt33AY.98.10.000145
S51T51del1acTac-33AY.98.10.000145
S51T51AActGct33B.10.000027
S51T51delACT---33B.10.000027
S51T51IaCtaTt33B.1.1600.000094
S51T51del1acTac-33B.1.1600.000094
S51T51IaCtaTt33B.1.2130.044776
S51T51TacTacC33B.1.2340.000396
S51T51IaCtaTt33B.1.4270.000151
S51T51IaCtaTt33B.1.5750.00091
S51T51IaCtaTt33B.1.5960.000261
S51T51del1acTac-33B.1.617.20.000011
S51T51SaCtaGt33B.1.617.20.000011
S51T51TacTacG13P.10.000016
S51T51TacTacC13P.10.000016
S51T51TacTacA13P.10.000016
S51T51IaCtaTt22AE.80.000978
S51T51PActCct22All0
S51T51delACT---22AY.1030.000012
S51T51del1acTac-22AY.1110.000366
S51T51TacTacG22AY.1170.000169
S51T51IaCtaTt22AY.1170.000169
S51T51IaCtaTt22AY.1180.000125
S51T51delACT---22AY.1200.000074
S51T51IaCtaTt22AY.140.000176
S51T51IaCtaTt22AY.16.10.00094
S51T51TacTacC22AY.230.000139
S51T51AActGct22AY.250.000012
S51T51TacTacC22AY.30.00002
S51T51del1acTac-22AY.340.000194
S51T51delACT---22AY.390.000049
S51T51IaCtaTt22AY.4.20.000043
S51T51delACT---22AY.420.00008
S51T51delACT---22AY.440.000012
S51T51AActGct22AY.470.000062
S51T51del1acTac-22AY.50.000041
S51T51IaCtaTt22AY.530.000575
S51T51IaCtaTt22AY.590.001059
S51T51IaCtaTt22AY.610.00021
S51T51IaCtaTt22AY.680.000547
S51T51IaCtaTt22AY.750.000112
S51T51IaCtaTt22AY.9.20.000073
S51T51IaCtaTt22B0.000256
S51T51TacTacG22B.10.000018
S51T51NaCtaAt22B.10.000018
S51T51IaCtaTt22B.1.1.280.000622
S51T51del1acTac-22B.1.1.390.001019
S51T51delACT---22B.1.1600.000062
S51T51TacTacG22B.1.1600.000062
S51T51TacTacG12B.1.1770.000013
S51T51TacTacC12B.1.1770.000013
S51T51TacTacC22B.1.221.10.005814
S51T51TacTacC22B.1.2430.000139
S51T51IaCtaTt22B.1.360.000292
S51T51IaCtaTt22B.1.36.160.002849
S51T51del1acTac-22B.1.3780.013699
S51T51TacTacC22B.1.4290.000047
S51T51del1aCta-t22B.1.6270.00404
S51T51IaCtaTt22C.360.001821
S51T51IaCtaTt22P.1.70.000639
S51T51IaCtaTt11A.2.50.000499
S51T51IaCtaTt11A.23.10.000704
S51T51delACT---11AD.20.000219
S51T51IaCtaTt11AD.20.000219
S51T51TacTacG11AY.1020.000027
S51T51AActGct11AY.1030.000006
S51T51del1acTac-11AY.1030.000006
S51T51IaCtaTt11AY.1070.000466
S51T51delACT---11AY.1080.001103
S51T51NaCtaAt11AY.1110.000183
S51T51delACT---11AY.1130.000142
S51T51del1acTac-11AY.1170.000085
S51T51IaCtaTt11AY.120.2.10.000498
S51T51TacTacG11AY.16.10.00047
S51T51delACT---11AY.190.00114
S51T51delACT---11AY.200.000039
S51T51del1acTac-11AY.210.001898
S51T51IaCtaTt11AY.230.00007
S51T51AActGct11AY.230.00007
S51T51delACT---11AY.230.00007
S51T51TacTacC11AY.23.10.000417
S51T51NaCtaAt11AY.250.000006
S51T51NaCtaAt11AY.260.000028
S51T51delACT---11AY.260.000028
S51T51del1acTac-11AY.260.000028
S51T51TacTacC11AY.290.000016
S51T51NaCtaAt11AY.290.000016
S51T51IaCtaTt11AY.300.000396
S51T51del1acTac-11AY.320.000532
S51T51TacTacC11AY.320.000532
S51T51TacTacA11AY.330.000067
S51T51del1acTac-11AY.34.10.00051
S51T51delACT---11AY.34.10.00051
S51T51IaCtaTt11AY.350.000233
S51T51IaCtaTt11AY.380.000499
S51T51TacTacC11AY.390.000025
S51T51del1acTac-11AY.390.000025
S51T51IaCtaTt11AY.39.10.00004
S51T51del1acTac-11AY.39.10.00004
S51T51IaCtaTt11AY.39.1.10.000725
S51T51NaCtaAt11AY.40.000002
S51T51TacTacC11AY.4.20.000022
S51T51del1acTac-11AY.4.50.000107
S51T51IaCtaTt11AY.400.000964
S51T51TacTacC11AY.420.00004
S51T51SaCtaGt11AY.430.000004
S51T51AActGct11AY.430.000004
S51T51del2ACt--t11AY.440.000006
S51T51TacTacG11AY.460.000104
S51T51TacTacG11AY.46.60.000072
S51T51IaCtaTt11AY.470.000031
S51T51TacTacC11AY.5.30.000337
S51T51delACT---11AY.5.30.000337
S51T51IaCtaTt11AY.540.000095
S51T51NaCtaAt11AY.60.000041
S51T51delACT---11AY.600.000938
S51T51IaCtaTt11AY.620.000436
S51T51IaCtaTt11AY.630.000387
S51T51delACT---11AY.680.000274
S51T51IaCtaTt11AY.70.000196
S51T51IaCtaTt11AY.700.000209
S51T51delACT---11AY.720.001361
S51T51TacTacA11AY.730.000665
S51T51TacTacG11AY.740.000116
S51T51AActGct11AY.740.000116
S51T51IaCtaTt11AY.740.000116
S51T51del1acTac-11AY.750.000056
S51T51TacTacG11AY.750.000056
S51T51delACT---11AY.780.001541
S51T51TacTacC11AY.790.001211
S51T51delACT---11AY.850.000427
S51T51delACT---11AY.90.000068
S51T51del1acTac-11AY.90.000068
S51T51IaCtaTt11AY.90.000068
S51T51TacTacG11AY.90.000068
S51T51del1acTac-11AY.9.20.000037
S51T51SActTct11AY.960.002075
S51T51IaCtaTt11AY.990.001049
S51T51del2ACt--t11B.10.000009
S51T51del2aCTa--11B.1.10.000018
S51T51TacTacC11B.1.10.000018
S51T51NaCtaAt11B.1.10.000018
S51T51AActGct11B.1.10.000018
S51T51IaCtaTt11B.1.1.1520.04
S51T51IaCtaTt11B.1.1.2140.000055
S51T51IaCtaTt11B.1.1.250.000569
S51T51IaCtaTt11B.1.1.2630.001558
S51T51IaCtaTt11B.1.1.2840.000107
S51T51IaCtaTt11B.1.1.2940.001266
S51T51delACT---11B.1.1.3060.000438
S51T51delACT---11B.1.1.3110.000358
S51T51delACT---11B.1.1.3120.001912
S51T51delACT---11B.1.1.3170.000412
S51T51IaCtaTt11B.1.1.3170.000412
S51T51IaCtaTt11B.1.1.3260.001761
S51T51SaCtaGt11B.1.1.330.000421
S51T51AActGct11B.1.1.330.000421
S51T51SaCtaGt11B.1.1.3490.010309
S51T51del1acTac-11B.1.1.3720.000689
S51T51NaCtaAt11B.1.1.390.00051
S51T51IaCtaTt11B.1.1.4340.000349
S51T51NaCtaAt11B.1.1.70.000001
S51T51PActCct11B.1.1.70.000001
S51T51SaCtaGt11B.1.1.70.000001
S51T51delACT---11B.1.1.700.000341
S51T51TacTacC11B.1.160.180.007299
S51T51del2aCTa--11B.1.177.150.000631
S51T51IaCtaTt11B.1.177.150.000631
S51T51delACT---11B.1.177.170.000821
S51T51delACT---11B.1.177.190.001431
S51T51delACT---11B.1.177.40.000211
S51T51IaCtaTt11B.1.177.40.000211
S51T51del1acTac-11B.1.177.440.000519
S51T51IaCtaTt11B.1.177.50.001242
S51T51del1acTac-11B.1.177.510.004566
S51T51delACT---11B.1.177.560.000668
S51T51IaCtaTt11B.1.177.60.000977
S51T51del1acTac-11B.1.177.630.002703
S51T51IaCtaTt11B.1.177.650.000665
S51T51IaCtaTt11B.1.177.730.000566
S51T51del1acTac-11B.1.177.730.000566
S51T51delACT---11B.1.177.830.001481
S51T51delACT---11B.1.1790.003759
S51T51AActGct11B.1.20.000009
S51T51delACT---11B.1.20.000009
S51T51IaCtaTt11B.1.2340.000132
S51T51TacTacA11B.1.2360.002053
S51T51IaCtaTt11B.1.2400.000216
S51T51IaCtaTt11B.1.2430.00007
S51T51del1acTac-11B.1.258.170.000104
S51T51IaCtaTt11B.1.2600.003344
S51T51PActCct11B.1.30.002618
S51T51AActGct11B.1.3510.00003
S51T51IaCtaTt11B.1.351.30.000876
S51T51AActGct11B.1.360.000146
S51T51NaCtaAt11B.1.36.270.000763
S51T51delACT---11B.1.36.290.000517
S51T51IaCtaTt11B.1.3620.001541
S51T51TacTacC11B.1.3670.000792
S51T51del1acTac-11B.1.3750.00082
S51T51IaCtaTt11B.1.4040.001302
S51T51TacTacC11B.1.4050.012346
S51T51TacTacA11B.1.4090.000781
S51T51delACT---11B.1.4270.00005
S51T51AActGct11B.1.4290.000024
S51T51delACT---11B.1.4700.001404
S51T51IaCtaTt11B.1.5240.001406
S51T51delACT---11B.1.5260.000024
S51T51IaCtaTt11B.1.5320.006211
S51T51IaCtaTt11B.1.617.10.000129
S51T51AActGct11B.1.617.20.000004
S51T51NaCtaAt11B.1.617.20.000004
S51T51delACT---11B.1.6200.000946
S51T51IaCtaTt11B.1.6210.000089
S51T51delACT---11B.1.6210.000089
S51T51IaCtaTt11B.1.6300.005236
S51T51AActGct11B.6.60.000889
S51T51delACT---11C.360.000911
S51T51IaCtaTt11C.36.30.000567
S51T51IaCtaTt11C.370.000116
S51T51IaCtaTt11C.37.10.002618
S51T51IaCtaTt11D.20.000075
S51T51NaCtaAt11P.10.000016
S51T51delACT---11P.10.000016
S51T51IaCtaTt11P.1.140.000048
S51T51TacTacA11P.1.150.000232
S51T51delACT---11Q.10.000126
S51T51IaCtaTt11Q.10.000126
S51T51delACT---11Q.20.000613
S51T51IaCtaTt11Q.80.000165