CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 503 | V503V | syn | gtT | gtC | 647 | 592 | 0.914992 | 23069-23071 | |
S | 503 | V503V | syn | gtT | gtA | 647 | 46 | 0.0710974 | 23069-23071 | |
S | 503 | V503V | syn | gtT | gtG | 647 | 9 | 0.0139104 | 23069-23071 | |
S | 503 | V503I | nonsyn | Gtt | Att | 624 | 617 | 0.988782 | 23069-23071 | |
S | 503 | V503I | nonsyn | GtT | AtA | 624 | 5 | 0.00801282 | 23069-23071 | |
S | 503 | V503I | nonsyn | GtT | AtC | 624 | 2 | 0.00320513 | 23069-23071 | |
S | 503 | V503F | nonsyn | Gtt | Ttt | 483 | 482 | 0.99793 | 23069-23071 | |
S | 503 | V503F | nonsyn | GtT | TtC | 483 | 1 | 0.00207039 | 23069-23071 | |
S | 503 | V503del | del | GTT | --- | 161 | 161 | 1 | 23069-23071 | |
S | 503 | V503A | nonsyn | gTt | gCt | 82 | 81 | 0.987805 | 23069-23071 | |
S | 503 | V503A | nonsyn | gTT | gCC | 82 | 1 | 0.0121951 | 23069-23071 | |
S | 503 | V503L | nonsyn | Gtt | Ctt | 37 | 35 | 0.945946 | 23069-23071 | |
S | 503 | V503L | nonsyn | GtT | CtC | 37 | 1 | 0.027027 | 23069-23071 | |
S | 503 | V503L | nonsyn | GtT | CtG | 37 | 1 | 0.027027 | 23069-23071 | |
S | 503 | V503D | nonsyn | gTt | gAt | 11 | 10 | 0.909091 | 23069-23071 | |
S | 503 | V503D | nonsyn | gTT | gAC | 11 | 1 | 0.0909091 | 23069-23071 | |
S | 503 | V503G | nonsyn | gTt | gGt | 10 | 7 | 0.7 | 23069-23071 | |
S | 503 | V503G | nonsyn | gTT | gGA | 10 | 2 | 0.2 | 23069-23071 | |
S | 503 | V503G | nonsyn | gTT | gGC | 10 | 1 | 0.1 | 23069-23071 | |
S | 503 | V503C | nonsyn | GTt | TGt | 8 | 5 | 0.625 | 23069-23071 | |
S | 503 | V503C | nonsyn | GTT | TGC | 8 | 3 | 0.375 | 23069-23071 | |
S | 503 | V503S | nonsyn | GTt | AGt | 7 | 3 | 0.428571 | 23069-23071 | |
S | 503 | V503S | nonsyn | GTt | TCt | 7 | 2 | 0.285714 | 23069-23071 | |
S | 503 | V503S | nonsyn | GTT | TCC | 7 | 1 | 0.142857 | 23069-23071 | |
S | 503 | V503S | nonsyn | GTT | TCA | 7 | 1 | 0.142857 | 23069-23071 | |
S | 503 | V503T | nonsyn | GTt | ACt | 6 | 4 | 0.666667 | 23069-23071 | |
S | 503 | V503T | nonsyn | GTT | ACG | 6 | 2 | 0.333333 | 23069-23071 | |
S | 503 | V503del1 | del | Gtt | -tt | 4 | 2 | 0.5 | 23069-23071 | |
S | 503 | V503del1 | del | gtT | gt- | 4 | 1 | 0.25 | 23069-23071 | |
S | 503 | V503del1 | del | GtT | -tA | 4 | 1 | 0.25 | 23069-23071 | |
S | 503 | V503del2 | del | gTT | g-- | 3 | 3 | 1 | 23069-23071 | |
S | 503 | V503Y | nonsyn | GTT | TAC | 3 | 2 | 0.666667 | 23069-23071 | |
S | 503 | V503Y | nonsyn | GTt | TAt | 3 | 1 | 0.333333 | 23069-23071 | |
S | 503 | V503E | nonsyn | gTT | gAA | 2 | 1 | 0.5 | 23069-23071 | |
S | 503 | V503E | nonsyn | gTT | gAG | 2 | 1 | 0.5 | 23069-23071 | |
S | 503 | V503X | nonsyn | GTT | TAG | 1 | 1 | 1 | 23069-23071 | |
S | 503 | V503K | nonsyn | GTT | AAA | 1 | 1 | 1 | 23069-23071 | |
S | 503 | V503R | nonsyn | GTT | AGA | 1 | 1 | 1 | 23069-23071 | |
S | 503 | V503M | nonsyn | GtT | AtG | 1 | 1 | 1 | 23069-23071 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 503 | V503V | gtT | gtC | 592 | 647 | All | 0.000113 |
S | 503 | V503V | gtT | gtA | 46 | 647 | All | 0.000009 |
S | 503 | V503V | gtT | gtG | 9 | 647 | All | 0.000002 |
S | 503 | V503I | Gtt | Att | 617 | 624 | All | 0.000118 |
S | 503 | V503I | GtT | AtA | 5 | 624 | All | 0.000001 |
S | 503 | V503I | GtT | AtC | 2 | 624 | All | 0 |
S | 503 | V503F | Gtt | Ttt | 482 | 483 | All | 0.000092 |
S | 503 | V503F | GtT | TtC | 1 | 483 | All | 0 |
S | 503 | V503V | gtT | gtC | 373 | 373 | B.1.258.22 | 0.994667 |
S | 503 | V503I | Gtt | Att | 307 | 307 | B.1.427 | 0.015503 |
S | 503 | V503del | GTT | --- | 161 | 161 | All | 0.000031 |
S | 503 | V503F | Gtt | Ttt | 83 | 83 | B.1.1.7 | 0.000074 |
S | 503 | V503A | gTt | gCt | 81 | 82 | All | 0.000015 |
S | 503 | V503A | gTT | gCC | 1 | 82 | All | 0 |
S | 503 | V503V | gtT | gtC | 73 | 73 | AY.42 | 0.002937 |
S | 503 | V503F | Gtt | Ttt | 59 | 59 | AY.4 | 0.000092 |
S | 503 | V503I | Gtt | Att | 50 | 50 | AY.98.1 | 0.002422 |
S | 503 | V503L | Gtt | Ctt | 35 | 37 | All | 0.000007 |
S | 503 | V503L | GtT | CtG | 1 | 37 | All | 0 |
S | 503 | V503L | GtT | CtC | 1 | 37 | All | 0 |
S | 503 | V503del | GTT | --- | 36 | 36 | B.1.617.2 | 0.000136 |
S | 503 | V503F | Gtt | Ttt | 35 | 35 | B.1.617.2 | 0.000132 |
S | 503 | V503V | gtT | gtC | 30 | 30 | AY.39 | 0.000741 |
S | 503 | V503F | Gtt | Ttt | 29 | 29 | AY.120 | 0.001078 |
S | 503 | V503F | Gtt | Ttt | 28 | 28 | AY.43 | 0.000124 |
S | 503 | V503del | GTT | --- | 26 | 26 | AY.4 | 0.00004 |
S | 503 | V503I | Gtt | Att | 24 | 25 | AY.4 | 0.000037 |
S | 503 | V503I | GtT | AtA | 1 | 25 | AY.4 | 0.000002 |
S | 503 | V503I | Gtt | Att | 25 | 25 | B.1.596 | 0.002178 |
S | 503 | V503F | Gtt | Ttt | 23 | 23 | AY.39 | 0.000568 |
S | 503 | V503A | gTt | gCt | 23 | 23 | AY.44 | 0.00014 |
S | 503 | V503V | gtT | gtC | 16 | 23 | B.1.1.7 | 0.000014 |
S | 503 | V503V | gtT | gtA | 6 | 23 | B.1.1.7 | 0.000005 |
S | 503 | V503V | gtT | gtG | 1 | 23 | B.1.1.7 | 0.000001 |
S | 503 | V503F | Gtt | Ttt | 21 | 21 | AY.33 | 0.001402 |
S | 503 | V503V | gtT | gtC | 21 | 21 | AY.4 | 0.000033 |
S | 503 | V503del | GTT | --- | 21 | 21 | AY.43 | 0.000093 |
S | 503 | V503A | gTt | gCt | 21 | 21 | B.1.1.7 | 0.000019 |
S | 503 | V503I | Gtt | Att | 20 | 20 | AY.103 | 0.000124 |
S | 503 | V503F | Gtt | Ttt | 16 | 16 | AY.103 | 0.000099 |
S | 503 | V503F | Gtt | Ttt | 16 | 16 | AY.26 | 0.000453 |
S | 503 | V503I | Gtt | Att | 15 | 15 | AY.53 | 0.004313 |
S | 503 | V503V | gtT | gtC | 14 | 15 | B.1.617.2 | 0.000053 |
S | 503 | V503V | gtT | gtA | 1 | 15 | B.1.617.2 | 0.000004 |
S | 503 | V503L | Gtt | Ctt | 14 | 14 | B.1.1.7 | 0.000013 |
S | 503 | V503I | Gtt | Att | 14 | 14 | B.1.1.7 | 0.000013 |
S | 503 | V503F | Gtt | Ttt | 13 | 13 | AY.44 | 0.000079 |
S | 503 | V503I | Gtt | Att | 13 | 13 | B.1.1.389 | 0.078788 |
S | 503 | V503V | gtT | gtA | 9 | 13 | B.1.177 | 0.000119 |
S | 503 | V503V | gtT | gtC | 4 | 13 | B.1.177 | 0.000053 |
S | 503 | V503D | gTt | gAt | 10 | 11 | All | 0.000002 |
S | 503 | V503D | gTT | gAC | 1 | 11 | All | 0 |
S | 503 | V503F | Gtt | Ttt | 11 | 11 | AY.25 | 0.000066 |
S | 503 | V503I | Gtt | Att | 11 | 11 | B.1.527 | 0.040741 |
S | 503 | V503G | gTt | gGt | 7 | 10 | All | 0.000001 |
S | 503 | V503G | gTT | gGA | 2 | 10 | All | 0 |
S | 503 | V503G | gTT | gGC | 1 | 10 | All | 0 |
S | 503 | V503F | Gtt | Ttt | 10 | 10 | AY.9.2 | 0.000367 |
S | 503 | V503I | Gtt | Att | 10 | 10 | B.1 | 0.000092 |
S | 503 | V503I | Gtt | Att | 10 | 10 | B.1.617.2 | 0.000038 |
S | 503 | V503I | Gtt | Att | 9 | 9 | AY.10 | 0.004769 |
S | 503 | V503F | Gtt | Ttt | 9 | 9 | B.1.177 | 0.000119 |
S | 503 | V503V | gtT | gtA | 9 | 9 | C.37 | 0.001045 |
S | 503 | V503C | GTt | TGt | 5 | 8 | All | 0.000001 |
S | 503 | V503C | GTT | TGC | 3 | 8 | All | 0.000001 |
S | 503 | V503V | gtT | gtA | 4 | 8 | B.1 | 0.000037 |
S | 503 | V503V | gtT | gtC | 3 | 8 | B.1 | 0.000027 |
S | 503 | V503V | gtT | gtG | 1 | 8 | B.1 | 0.000009 |
S | 503 | V503V | gtT | gtC | 8 | 8 | B.1.177.62 | 0.009535 |
S | 503 | V503V | gtT | gtA | 5 | 8 | B.1.2 | 0.000044 |
S | 503 | V503V | gtT | gtC | 2 | 8 | B.1.2 | 0.000018 |
S | 503 | V503V | gtT | gtG | 1 | 8 | B.1.2 | 0.000009 |
S | 503 | V503I | Gtt | Att | 8 | 8 | B.1.336 | 0.019512 |
S | 503 | V503S | GTt | AGt | 3 | 7 | All | 0.000001 |
S | 503 | V503S | GTt | TCt | 2 | 7 | All | 0 |
S | 503 | V503S | GTT | TCC | 1 | 7 | All | 0 |
S | 503 | V503S | GTT | TCA | 1 | 7 | All | 0 |
S | 503 | V503I | Gtt | Att | 7 | 7 | AY.3 | 0.00007 |
S | 503 | V503I | Gtt | Att | 7 | 7 | AY.44 | 0.000043 |
S | 503 | V503F | Gtt | Ttt | 7 | 7 | AY.46.6 | 0.000505 |
S | 503 | V503F | Gtt | Ttt | 7 | 7 | B.1 | 0.000064 |
S | 503 | V503T | GTt | ACt | 4 | 6 | All | 0.000001 |
S | 503 | V503T | GTT | ACG | 2 | 6 | All | 0 |
S | 503 | V503F | Gtt | Ttt | 6 | 6 | AY.4.2 | 0.00013 |
S | 503 | V503D | gTt | gAt | 6 | 6 | AY.44 | 0.000037 |
S | 503 | V503I | Gtt | Att | 6 | 6 | B.1.1.519 | 0.000238 |
S | 503 | V503F | Gtt | Ttt | 6 | 6 | B.1.2 | 0.000053 |
S | 503 | V503F | Gtt | Ttt | 5 | 5 | AY.102 | 0.000133 |
S | 503 | V503F | Gtt | Ttt | 5 | 5 | AY.119 | 0.000177 |
S | 503 | V503V | gtT | gtC | 4 | 5 | AY.43 | 0.000018 |
S | 503 | V503V | gtT | gtG | 1 | 5 | AY.43 | 0.000004 |
S | 503 | V503del | GTT | --- | 5 | 5 | AY.46.6 | 0.000361 |
S | 503 | V503V | gtT | gtC | 5 | 5 | AY.71 | 0.002375 |
S | 503 | V503del | GTT | --- | 5 | 5 | AY.9.2 | 0.000184 |
S | 503 | V503I | Gtt | Att | 5 | 5 | B.1.221 | 0.000355 |
S | 503 | V503F | Gtt | Ttt | 5 | 5 | B.1.587 | 0.009488 |
S | 503 | V503L | Gtt | Ctt | 5 | 5 | P.1 | 0.000079 |
S | 503 | V503F | Gtt | Ttt | 4 | 4 | 0.222222 | |
S | 503 | V503del1 | Gtt | -tt | 2 | 4 | All | 0 |
S | 503 | V503del1 | GtT | -tA | 1 | 4 | All | 0 |
S | 503 | V503del1 | gtT | gt- | 1 | 4 | All | 0 |
S | 503 | V503I | Gtt | Att | 4 | 4 | AY.20 | 0.000155 |
S | 503 | V503I | Gtt | Att | 4 | 4 | AY.25 | 0.000024 |
S | 503 | V503I | Gtt | Att | 4 | 4 | AY.98 | 0.000316 |
S | 503 | V503F | Gtt | Ttt | 3 | 4 | B.1.1 | 0.000054 |
S | 503 | V503F | GtT | TtC | 1 | 4 | B.1.1 | 0.000018 |
S | 503 | V503I | Gtt | Att | 4 | 4 | B.1.1.307 | 0.010127 |
S | 503 | V503F | Gtt | Ttt | 4 | 4 | B.1.1.519 | 0.000159 |
S | 503 | V503A | gTt | gCt | 3 | 4 | B.1.617.2 | 0.000011 |
S | 503 | V503A | gTT | gCC | 1 | 4 | B.1.617.2 | 0.000004 |
S | 503 | V503del2 | gTT | g-- | 3 | 3 | All | 0.000001 |
S | 503 | V503Y | GTT | TAC | 2 | 3 | All | 0 |
S | 503 | V503Y | GTt | TAt | 1 | 3 | All | 0 |
S | 503 | V503V | gtT | gtC | 3 | 3 | AY.103 | 0.000019 |
S | 503 | V503I | Gtt | Att | 3 | 3 | AY.14 | 0.000264 |
S | 503 | V503F | Gtt | Ttt | 3 | 3 | AY.23 | 0.000209 |
S | 503 | V503I | Gtt | Att | 3 | 3 | AY.26 | 0.000085 |
S | 503 | V503F | Gtt | Ttt | 3 | 3 | AY.27 | 0.000194 |
S | 503 | V503F | Gtt | Ttt | 3 | 3 | AY.29 | 0.000047 |
S | 503 | V503I | Gtt | Att | 3 | 3 | AY.29 | 0.000047 |
S | 503 | V503del | GTT | --- | 3 | 3 | AY.3 | 0.00003 |
S | 503 | V503F | Gtt | Ttt | 3 | 3 | AY.3 | 0.00003 |
S | 503 | V503del | GTT | --- | 3 | 3 | AY.34 | 0.000291 |
S | 503 | V503V | gtT | gtC | 3 | 3 | AY.36 | 0.000445 |
S | 503 | V503I | Gtt | Att | 2 | 3 | AY.42 | 0.00008 |
S | 503 | V503I | GtT | AtC | 1 | 3 | AY.42 | 0.00004 |
S | 503 | V503del | GTT | --- | 3 | 3 | AY.44 | 0.000018 |
S | 503 | V503del | GTT | --- | 3 | 3 | AY.75 | 0.000168 |
S | 503 | V503I | Gtt | Att | 2 | 3 | AY.99 | 0.002099 |
S | 503 | V503I | GtT | AtA | 1 | 3 | AY.99 | 0.001049 |
S | 503 | V503del | GTT | --- | 3 | 3 | B.1.1.7 | 0.000003 |
S | 503 | V503A | gTt | gCt | 3 | 3 | B.1.160 | 0.000094 |
S | 503 | V503L | GtT | CtC | 1 | 3 | B.1.2 | 0.000009 |
S | 503 | V503L | GtT | CtG | 1 | 3 | B.1.2 | 0.000009 |
S | 503 | V503L | Gtt | Ctt | 1 | 3 | B.1.2 | 0.000009 |
S | 503 | V503V | gtT | gtG | 2 | 3 | B.1.351 | 0.000059 |
S | 503 | V503V | gtT | gtC | 1 | 3 | B.1.351 | 0.00003 |
S | 503 | V503F | Gtt | Ttt | 3 | 3 | B.1.409 | 0.002344 |
S | 503 | V503F | Gtt | Ttt | 3 | 3 | B.1.429 | 0.000071 |
S | 503 | V503V | gtT | gtC | 3 | 3 | B.1.596 | 0.000261 |
S | 503 | V503L | Gtt | Ctt | 3 | 3 | B.1.617.2 | 0.000011 |
S | 503 | V503I | Gtt | Att | 3 | 3 | B.1.621 | 0.000266 |
S | 503 | V503F | Gtt | Ttt | 3 | 3 | P.1 | 0.000047 |
S | 503 | V503L | Gtt | Ctt | 3 | 3 | P.1.2 | 0.003468 |
S | 503 | V503F | Gtt | Ttt | 3 | 3 | P.1.9 | 0.014423 |
S | 503 | V503del | GTT | --- | 2 | 2 | 0.111111 | |
S | 503 | V503S | GTt | AGt | 2 | 2 | 0.111111 | |
S | 503 | V503C | GTt | TGt | 2 | 2 | 0.111111 | |
S | 503 | V503I | Gtt | Att | 2 | 2 | 0.111111 | |
S | 503 | V503E | gTT | gAG | 1 | 2 | All | 0 |
S | 503 | V503E | gTT | gAA | 1 | 2 | All | 0 |
S | 503 | V503del | GTT | --- | 2 | 2 | AY.102 | 0.000053 |
S | 503 | V503I | Gtt | Att | 2 | 2 | AY.102 | 0.000053 |
S | 503 | V503A | gTt | gCt | 2 | 2 | AY.103 | 0.000012 |
S | 503 | V503I | GtT | AtA | 1 | 2 | AY.113 | 0.000142 |
S | 503 | V503I | Gtt | Att | 1 | 2 | AY.113 | 0.000142 |
S | 503 | V503G | gTt | gGt | 2 | 2 | AY.117 | 0.000169 |
S | 503 | V503del | GTT | --- | 2 | 2 | AY.120 | 0.000074 |
S | 503 | V503I | Gtt | Att | 2 | 2 | AY.120 | 0.000074 |
S | 503 | V503del | GTT | --- | 2 | 2 | AY.25 | 0.000012 |
S | 503 | V503V | gtT | gtA | 2 | 2 | AY.25 | 0.000012 |
S | 503 | V503del | GTT | --- | 2 | 2 | AY.26 | 0.000057 |
S | 503 | V503del | GTT | --- | 2 | 2 | AY.29 | 0.000032 |
S | 503 | V503I | Gtt | Att | 2 | 2 | AY.30 | 0.000791 |
S | 503 | V503F | Gtt | Ttt | 2 | 2 | AY.34.1 | 0.00102 |
S | 503 | V503V | gtT | gtA | 2 | 2 | AY.39.1 | 0.000079 |
S | 503 | V503A | gTt | gCt | 2 | 2 | AY.4 | 0.000003 |
S | 503 | V503C | GTt | TGt | 2 | 2 | AY.4 | 0.000003 |
S | 503 | V503S | GTT | TCC | 1 | 2 | AY.4 | 0.000002 |
S | 503 | V503S | GTt | TCt | 1 | 2 | AY.4 | 0.000002 |
S | 503 | V503V | gtT | gtC | 2 | 2 | AY.4.2 | 0.000043 |
S | 503 | V503del | GTT | --- | 2 | 2 | AY.42 | 0.00008 |
S | 503 | V503I | Gtt | Att | 1 | 2 | AY.43 | 0.000004 |
S | 503 | V503I | GtT | AtA | 1 | 2 | AY.43 | 0.000004 |
S | 503 | V503del1 | Gtt | -tt | 1 | 2 | AY.43 | 0.000004 |
S | 503 | V503del1 | gtT | gt- | 1 | 2 | AY.43 | 0.000004 |
S | 503 | V503G | gTt | gGt | 2 | 2 | AY.44 | 0.000012 |
S | 503 | V503F | Gtt | Ttt | 2 | 2 | AY.5 | 0.000041 |
S | 503 | V503del | GTT | --- | 2 | 2 | AY.5.4 | 0.000553 |
S | 503 | V503F | Gtt | Ttt | 2 | 2 | AY.61 | 0.00021 |
S | 503 | V503del | GTT | --- | 2 | 2 | AY.71 | 0.00095 |
S | 503 | V503I | Gtt | Att | 2 | 2 | AY.73 | 0.001331 |
S | 503 | V503V | gtT | gtC | 2 | 2 | AY.75 | 0.000112 |
S | 503 | V503V | gtT | gtC | 1 | 2 | AY.75.1 | 0.00018 |
S | 503 | V503V | gtT | gtA | 1 | 2 | AY.75.1 | 0.00018 |
S | 503 | V503I | Gtt | Att | 2 | 2 | AY.79 | 0.002421 |
S | 503 | V503A | gTt | gCt | 2 | 2 | AY.8 | 0.001212 |
S | 503 | V503del | GTT | --- | 2 | 2 | AY.84 | 0.000875 |
S | 503 | V503F | Gtt | Ttt | 2 | 2 | AY.98.1 | 0.000097 |
S | 503 | V503F | Gtt | Ttt | 2 | 2 | AY.99.2 | 0.000184 |
S | 503 | V503L | Gtt | Ctt | 2 | 2 | B.1.1.519 | 0.000079 |
S | 503 | V503del | GTT | --- | 2 | 2 | B.1.1.519 | 0.000079 |
S | 503 | V503G | gTt | gGt | 2 | 2 | B.1.1.7 | 0.000002 |
S | 503 | V503V | gtT | gtC | 2 | 2 | B.1.160 | 0.000062 |
S | 503 | V503A | gTt | gCt | 2 | 2 | B.1.177 | 0.000026 |
S | 503 | V503A | gTt | gCt | 2 | 2 | B.1.177.44 | 0.001038 |
S | 503 | V503I | Gtt | Att | 1 | 2 | B.1.2 | 0.000009 |
S | 503 | V503I | GtT | AtC | 1 | 2 | B.1.2 | 0.000009 |
S | 503 | V503F | Gtt | Ttt | 2 | 2 | B.1.221 | 0.000142 |
S | 503 | V503V | gtT | gtC | 2 | 2 | B.1.258 | 0.000133 |
S | 503 | V503F | Gtt | Ttt | 2 | 2 | B.1.351 | 0.000059 |
S | 503 | V503V | gtT | gtC | 2 | 2 | B.1.429 | 0.000047 |
S | 503 | V503I | Gtt | Att | 2 | 2 | B.1.429 | 0.000047 |
S | 503 | V503F | Gtt | Ttt | 2 | 2 | B.1.617.1 | 0.000258 |
S | 503 | V503L | Gtt | Ctt | 2 | 2 | B.1.619 | 0.001742 |
S | 503 | V503A | gTt | gCt | 2 | 2 | B.1.628 | 0.000705 |
S | 503 | V503V | gtT | gtA | 2 | 2 | B.40 | 0.000729 |
S | 503 | V503V | gtT | gtC | 2 | 2 | P.1 | 0.000032 |
S | 503 | V503A | gTt | gCt | 2 | 2 | P.1 | 0.000032 |
S | 503 | V503A | gTt | gCt | 2 | 2 | P.1.17 | 0.000324 |
S | 503 | V503F | Gtt | Ttt | 2 | 2 | P.1.4 | 0.001953 |
S | 503 | V503I | Gtt | Att | 2 | 2 | P.2 | 0.000373 |
S | 503 | V503D | gTt | gAt | 1 | 1 | 0.055556 | |
S | 503 | V503Y | GTt | TAt | 1 | 1 | 0.055556 | |
S | 503 | V503V | gtT | gtC | 1 | 1 | A.1 | 0.000282 |
S | 503 | V503I | Gtt | Att | 1 | 1 | A.5 | 0.001923 |
S | 503 | V503R | GTT | AGA | 1 | 1 | All | 0 |
S | 503 | V503K | GTT | AAA | 1 | 1 | All | 0 |
S | 503 | V503M | GtT | AtG | 1 | 1 | All | 0 |
S | 503 | V503X | GTT | TAG | 1 | 1 | All | 0 |
S | 503 | V503del2 | gTT | g-- | 1 | 1 | AY.1 | 0.000396 |
S | 503 | V503I | Gtt | Att | 1 | 1 | AY.100 | 0.000046 |
S | 503 | V503del | GTT | --- | 1 | 1 | AY.103 | 0.000006 |
S | 503 | V503T | GTT | ACG | 1 | 1 | AY.103 | 0.000006 |
S | 503 | V503del | GTT | --- | 1 | 1 | AY.107 | 0.000466 |
S | 503 | V503del | GTT | --- | 1 | 1 | AY.108 | 0.001103 |
S | 503 | V503I | Gtt | Att | 1 | 1 | AY.108 | 0.001103 |
S | 503 | V503I | Gtt | Att | 1 | 1 | AY.109 | 0.00074 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | AY.113 | 0.000142 |
S | 503 | V503V | gtT | gtC | 1 | 1 | AY.114 | 0.000231 |
S | 503 | V503A | gTt | gCt | 1 | 1 | AY.116 | 0.000287 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | AY.116 | 0.000287 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | AY.117 | 0.000085 |
S | 503 | V503del | GTT | --- | 1 | 1 | AY.117 | 0.000085 |
S | 503 | V503S | GTt | TCt | 1 | 1 | AY.117 | 0.000085 |
S | 503 | V503C | GTT | TGC | 1 | 1 | AY.117 | 0.000085 |
S | 503 | V503C | GTt | TGt | 1 | 1 | AY.118 | 0.000063 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | AY.120.2.1 | 0.000498 |
S | 503 | V503V | gtT | gtG | 1 | 1 | AY.121 | 0.000135 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | AY.121 | 0.000135 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | AY.14 | 0.000088 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | AY.20 | 0.000039 |
S | 503 | V503T | GTT | ACG | 1 | 1 | AY.20 | 0.000039 |
S | 503 | V503A | gTt | gCt | 1 | 1 | AY.20 | 0.000039 |
S | 503 | V503I | Gtt | Att | 1 | 1 | AY.23 | 0.00007 |
S | 503 | V503A | gTt | gCt | 1 | 1 | AY.23 | 0.00007 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | AY.23.1 | 0.000417 |
S | 503 | V503S | GTT | TCA | 1 | 1 | AY.25 | 0.000006 |
S | 503 | V503L | Gtt | Ctt | 1 | 1 | AY.29 | 0.000016 |
S | 503 | V503D | gTt | gAt | 1 | 1 | AY.29 | 0.000016 |
S | 503 | V503del | GTT | --- | 1 | 1 | AY.29.1 | 0.000221 |
S | 503 | V503V | gtT | gtC | 1 | 1 | AY.3 | 0.00001 |
S | 503 | V503del | GTT | --- | 1 | 1 | AY.33 | 0.000067 |
S | 503 | V503del | GTT | --- | 1 | 1 | AY.36 | 0.000148 |
S | 503 | V503C | GTT | TGC | 1 | 1 | AY.39 | 0.000025 |
S | 503 | V503Y | GTT | TAC | 1 | 1 | AY.39 | 0.000025 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | AY.39.1 | 0.00004 |
S | 503 | V503T | GTt | ACt | 1 | 1 | AY.4 | 0.000002 |
S | 503 | V503G | gTT | gGA | 1 | 1 | AY.4 | 0.000002 |
S | 503 | V503del2 | gTT | g-- | 1 | 1 | AY.4 | 0.000002 |
S | 503 | V503del | GTT | --- | 1 | 1 | AY.4.2 | 0.000022 |
S | 503 | V503T | GTt | ACt | 1 | 1 | AY.4.2 | 0.000022 |
S | 503 | V503I | Gtt | Att | 1 | 1 | AY.4.5 | 0.000107 |
S | 503 | V503I | Gtt | Att | 1 | 1 | AY.41 | 0.000294 |
S | 503 | V503R | GTT | AGA | 1 | 1 | AY.42 | 0.00004 |
S | 503 | V503Y | GTT | TAC | 1 | 1 | AY.42 | 0.00004 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | AY.42 | 0.00004 |
S | 503 | V503K | GTT | AAA | 1 | 1 | AY.43 | 0.000004 |
S | 503 | V503D | gTT | gAC | 1 | 1 | AY.43 | 0.000004 |
S | 503 | V503G | gTT | gGC | 1 | 1 | AY.43 | 0.000004 |
S | 503 | V503E | gTT | gAG | 1 | 1 | AY.43 | 0.000004 |
S | 503 | V503C | GTT | TGC | 1 | 1 | AY.43 | 0.000004 |
S | 503 | V503V | gtT | gtC | 1 | 1 | AY.44 | 0.000006 |
S | 503 | V503V | gtT | gtC | 1 | 1 | AY.45 | 0.000122 |
S | 503 | V503I | Gtt | Att | 1 | 1 | AY.45 | 0.000122 |
S | 503 | V503del | GTT | --- | 1 | 1 | AY.45 | 0.000122 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | AY.47 | 0.000031 |
S | 503 | V503I | Gtt | Att | 1 | 1 | AY.47 | 0.000031 |
S | 503 | V503T | GTt | ACt | 1 | 1 | AY.5 | 0.000021 |
S | 503 | V503del | GTT | --- | 1 | 1 | AY.5 | 0.000021 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | AY.5.4 | 0.000277 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | AY.54 | 0.000095 |
S | 503 | V503del | GTT | --- | 1 | 1 | AY.54 | 0.000095 |
S | 503 | V503I | Gtt | Att | 1 | 1 | AY.54 | 0.000095 |
S | 503 | V503I | Gtt | Att | 1 | 1 | AY.55 | 0.000917 |
S | 503 | V503V | gtT | gtA | 1 | 1 | AY.55 | 0.000917 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | AY.56 | 0.001605 |
S | 503 | V503del | GTT | --- | 1 | 1 | AY.6 | 0.000041 |
S | 503 | V503A | gTt | gCt | 1 | 1 | AY.61 | 0.000105 |
S | 503 | V503I | GtT | AtA | 1 | 1 | AY.67 | 0.000464 |
S | 503 | V503I | Gtt | Att | 1 | 1 | AY.68 | 0.000274 |
S | 503 | V503del | GTT | --- | 1 | 1 | AY.7 | 0.000196 |
S | 503 | V503A | gTt | gCt | 1 | 1 | AY.7.1 | 0.000113 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | AY.70 | 0.000209 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | AY.74 | 0.000116 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | AY.75.1 | 0.00018 |
S | 503 | V503del | GTT | --- | 1 | 1 | AY.75.1 | 0.00018 |
S | 503 | V503del | GTT | --- | 1 | 1 | AY.77 | 0.001127 |
S | 503 | V503A | gTt | gCt | 1 | 1 | AY.85 | 0.000427 |
S | 503 | V503A | gTt | gCt | 1 | 1 | AY.9 | 0.000068 |
S | 503 | V503V | gtT | gtC | 1 | 1 | AY.9 | 0.000068 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | AY.9.1 | 0.000084 |
S | 503 | V503V | gtT | gtG | 1 | 1 | AY.9.2 | 0.000037 |
S | 503 | V503A | gTt | gCt | 1 | 1 | AY.9.2 | 0.000037 |
S | 503 | V503del1 | GtT | -tA | 1 | 1 | AY.9.2 | 0.000037 |
S | 503 | V503X | GTT | TAG | 1 | 1 | AY.9.2 | 0.000037 |
S | 503 | V503del | GTT | --- | 1 | 1 | AY.91 | 0.00073 |
S | 503 | V503del | GTT | --- | 1 | 1 | AY.94 | 0.000443 |
S | 503 | V503G | gTT | gGA | 1 | 1 | AY.98 | 0.000079 |
S | 503 | V503V | gtT | gtC | 1 | 1 | AY.98 | 0.000079 |
S | 503 | V503A | gTt | gCt | 1 | 1 | AY.98.1 | 0.000048 |
S | 503 | V503del | GTT | --- | 1 | 1 | AY.98.1 | 0.000048 |
S | 503 | V503V | gtT | gtC | 1 | 1 | AZ.5 | 0.003509 |
S | 503 | V503I | Gtt | Att | 1 | 1 | B | 0.000128 |
S | 503 | V503L | Gtt | Ctt | 1 | 1 | B.1 | 0.000009 |
S | 503 | V503del | GTT | --- | 1 | 1 | B.1 | 0.000009 |
S | 503 | V503A | gTt | gCt | 1 | 1 | B.1 | 0.000009 |
S | 503 | V503del | GTT | --- | 1 | 1 | B.1.1 | 0.000018 |
S | 503 | V503V | gtT | gtC | 1 | 1 | B.1.1 | 0.000018 |
S | 503 | V503A | gTt | gCt | 1 | 1 | B.1.1 | 0.000018 |
S | 503 | V503G | gTt | gGt | 1 | 1 | B.1.1 | 0.000018 |
S | 503 | V503V | gtT | gtA | 1 | 1 | B.1.1.28 | 0.000311 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | B.1.1.389 | 0.006061 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | B.1.1.39 | 0.00051 |
S | 503 | V503del | GTT | --- | 1 | 1 | B.1.1.39 | 0.00051 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | B.1.1.411 | 0.014706 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | B.1.1.420 | 0.001006 |
S | 503 | V503I | Gtt | Att | 1 | 1 | B.1.1.420 | 0.001006 |
S | 503 | V503T | GTt | ACt | 1 | 1 | B.1.1.519 | 0.00004 |
S | 503 | V503I | Gtt | Att | 1 | 1 | B.1.1.526 | 0.003546 |
S | 503 | V503L | Gtt | Ctt | 1 | 1 | B.1.1.70 | 0.000341 |
S | 503 | V503V | gtT | gtC | 1 | 1 | B.1.1.71 | 0.006061 |
S | 503 | V503I | Gtt | Att | 1 | 1 | B.1.128 | 0.000635 |
S | 503 | V503del | GTT | --- | 1 | 1 | B.1.160 | 0.000031 |
S | 503 | V503I | Gtt | Att | 1 | 1 | B.1.177 | 0.000013 |
S | 503 | V503del | GTT | --- | 1 | 1 | B.1.177.12 | 0.000152 |
S | 503 | V503V | gtT | gtA | 1 | 1 | B.1.177.31 | 0.011494 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | B.1.177.7 | 0.000165 |
S | 503 | V503V | gtT | gtC | 1 | 1 | B.1.177.82 | 0.000477 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | B.1.190 | 0.01 |
S | 503 | V503M | GtT | AtG | 1 | 1 | B.1.2 | 0.000009 |
S | 503 | V503S | GTt | AGt | 1 | 1 | B.1.2 | 0.000009 |
S | 503 | V503A | gTt | gCt | 1 | 1 | B.1.2 | 0.000009 |
S | 503 | V503L | Gtt | Ctt | 1 | 1 | B.1.222 | 0.001692 |
S | 503 | V503D | gTt | gAt | 1 | 1 | B.1.243 | 0.00007 |
S | 503 | V503del | GTT | --- | 1 | 1 | B.1.258 | 0.000067 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | B.1.258.17 | 0.000104 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | B.1.258.7 | 0.001912 |
S | 503 | V503I | Gtt | Att | 1 | 1 | B.1.311 | 0.000275 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | B.1.329 | 0.000608 |
S | 503 | V503del | GTT | --- | 1 | 1 | B.1.351 | 0.00003 |
S | 503 | V503I | Gtt | Att | 1 | 1 | B.1.351 | 0.00003 |
S | 503 | V503V | gtT | gtC | 1 | 1 | B.1.36 | 0.000146 |
S | 503 | V503I | Gtt | Att | 1 | 1 | B.1.367 | 0.000792 |
S | 503 | V503V | gtT | gtA | 1 | 1 | B.1.369 | 0.000285 |
S | 503 | V503V | gtT | gtC | 1 | 1 | B.1.390 | 0.010638 |
S | 503 | V503V | gtT | gtG | 1 | 1 | B.1.427 | 0.00005 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | B.1.427 | 0.00005 |
S | 503 | V503A | gTt | gCt | 1 | 1 | B.1.429 | 0.000024 |
S | 503 | V503I | Gtt | Att | 1 | 1 | B.1.515 | 0.014493 |
S | 503 | V503V | gtT | gtC | 1 | 1 | B.1.526 | 0.000024 |
S | 503 | V503A | gTt | gCt | 1 | 1 | B.1.526 | 0.000024 |
S | 503 | V503del | GTT | --- | 1 | 1 | B.1.526 | 0.000024 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | B.1.526 | 0.000024 |
S | 503 | V503V | gtT | gtA | 1 | 1 | B.1.564.1 | 0.001577 |
S | 503 | V503I | Gtt | Att | 1 | 1 | B.1.582 | 0.000491 |
S | 503 | V503V | gtT | gtC | 1 | 1 | B.1.589 | 0.007576 |
S | 503 | V503D | gTt | gAt | 1 | 1 | B.1.595 | 0.000261 |
S | 503 | V503del1 | Gtt | -tt | 1 | 1 | B.1.617.2 | 0.000004 |
S | 503 | V503E | gTT | gAA | 1 | 1 | B.1.617.2 | 0.000004 |
S | 503 | V503del2 | gTT | g-- | 1 | 1 | B.1.617.2 | 0.000004 |
S | 503 | V503del | GTT | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | B.1.621 | 0.000089 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | B.1.628 | 0.000352 |
S | 503 | V503L | Gtt | Ctt | 1 | 1 | B.1.637 | 0.000073 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | B.23 | 0.002924 |
S | 503 | V503del | GTT | --- | 1 | 1 | B.34 | 0.013699 |
S | 503 | V503del | GTT | --- | 1 | 1 | B.61 | 0.005747 |
S | 503 | V503del | GTT | --- | 1 | 1 | C.17 | 0.055556 |
S | 503 | V503V | gtT | gtC | 1 | 1 | C.36 | 0.000911 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | D.2 | 0.000075 |
S | 503 | V503I | Gtt | Att | 1 | 1 | D.2 | 0.000075 |
S | 503 | V503I | Gtt | Att | 1 | 1 | P.1 | 0.000016 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | P.1.14 | 0.000048 |
S | 503 | V503F | Gtt | Ttt | 1 | 1 | P.2 | 0.000187 |
S | 503 | V503del | GTT | --- | 1 | 1 | Q.8 | 0.000165 |
S | 503 | V503I | Gtt | Att | 1 | 1 | Q.8 | 0.000165 |
S | 503 | V503A | gTt | gCt | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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