CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 503

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S503V503VsyngtTgtC6475920.91499223069-23071
S503V503VsyngtTgtA647460.071097423069-23071
S503V503VsyngtTgtG64790.013910423069-23071
S503V503InonsynGttAtt6246170.98878223069-23071
S503V503InonsynGtTAtA62450.0080128223069-23071
S503V503InonsynGtTAtC62420.0032051323069-23071
S503V503FnonsynGttTtt4834820.9979323069-23071
S503V503FnonsynGtTTtC48310.0020703923069-23071
S503V503deldelGTT---161161123069-23071
S503V503AnonsyngTtgCt82810.98780523069-23071
S503V503AnonsyngTTgCC8210.012195123069-23071
S503V503LnonsynGttCtt37350.94594623069-23071
S503V503LnonsynGtTCtC3710.02702723069-23071
S503V503LnonsynGtTCtG3710.02702723069-23071
S503V503DnonsyngTtgAt11100.90909123069-23071
S503V503DnonsyngTTgAC1110.090909123069-23071
S503V503GnonsyngTtgGt1070.723069-23071
S503V503GnonsyngTTgGA1020.223069-23071
S503V503GnonsyngTTgGC1010.123069-23071
S503V503CnonsynGTtTGt850.62523069-23071
S503V503CnonsynGTTTGC830.37523069-23071
S503V503SnonsynGTtAGt730.42857123069-23071
S503V503SnonsynGTtTCt720.28571423069-23071
S503V503SnonsynGTTTCC710.14285723069-23071
S503V503SnonsynGTTTCA710.14285723069-23071
S503V503TnonsynGTtACt640.66666723069-23071
S503V503TnonsynGTTACG620.33333323069-23071
S503V503del1delGtt-tt420.523069-23071
S503V503del1delgtTgt-410.2523069-23071
S503V503del1delGtT-tA410.2523069-23071
S503V503del2delgTTg--33123069-23071
S503V503YnonsynGTTTAC320.66666723069-23071
S503V503YnonsynGTtTAt310.33333323069-23071
S503V503EnonsyngTTgAA210.523069-23071
S503V503EnonsyngTTgAG210.523069-23071
S503V503XnonsynGTTTAG11123069-23071
S503V503KnonsynGTTAAA11123069-23071
S503V503RnonsynGTTAGA11123069-23071
S503V503MnonsynGtTAtG11123069-23071

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S503V503VgtTgtC592647All0.000113
S503V503VgtTgtA46647All0.000009
S503V503VgtTgtG9647All0.000002
S503V503IGttAtt617624All0.000118
S503V503IGtTAtA5624All0.000001
S503V503IGtTAtC2624All0
S503V503FGttTtt482483All0.000092
S503V503FGtTTtC1483All0
S503V503VgtTgtC373373B.1.258.220.994667
S503V503IGttAtt307307B.1.4270.015503
S503V503delGTT---161161All0.000031
S503V503FGttTtt8383B.1.1.70.000074
S503V503AgTtgCt8182All0.000015
S503V503AgTTgCC182All0
S503V503VgtTgtC7373AY.420.002937
S503V503FGttTtt5959AY.40.000092
S503V503IGttAtt5050AY.98.10.002422
S503V503LGttCtt3537All0.000007
S503V503LGtTCtG137All0
S503V503LGtTCtC137All0
S503V503delGTT---3636B.1.617.20.000136
S503V503FGttTtt3535B.1.617.20.000132
S503V503VgtTgtC3030AY.390.000741
S503V503FGttTtt2929AY.1200.001078
S503V503FGttTtt2828AY.430.000124
S503V503delGTT---2626AY.40.00004
S503V503IGttAtt2425AY.40.000037
S503V503IGtTAtA125AY.40.000002
S503V503IGttAtt2525B.1.5960.002178
S503V503FGttTtt2323AY.390.000568
S503V503AgTtgCt2323AY.440.00014
S503V503VgtTgtC1623B.1.1.70.000014
S503V503VgtTgtA623B.1.1.70.000005
S503V503VgtTgtG123B.1.1.70.000001
S503V503FGttTtt2121AY.330.001402
S503V503VgtTgtC2121AY.40.000033
S503V503delGTT---2121AY.430.000093
S503V503AgTtgCt2121B.1.1.70.000019
S503V503IGttAtt2020AY.1030.000124
S503V503FGttTtt1616AY.1030.000099
S503V503FGttTtt1616AY.260.000453
S503V503IGttAtt1515AY.530.004313
S503V503VgtTgtC1415B.1.617.20.000053
S503V503VgtTgtA115B.1.617.20.000004
S503V503LGttCtt1414B.1.1.70.000013
S503V503IGttAtt1414B.1.1.70.000013
S503V503FGttTtt1313AY.440.000079
S503V503IGttAtt1313B.1.1.3890.078788
S503V503VgtTgtA913B.1.1770.000119
S503V503VgtTgtC413B.1.1770.000053
S503V503DgTtgAt1011All0.000002
S503V503DgTTgAC111All0
S503V503FGttTtt1111AY.250.000066
S503V503IGttAtt1111B.1.5270.040741
S503V503GgTtgGt710All0.000001
S503V503GgTTgGA210All0
S503V503GgTTgGC110All0
S503V503FGttTtt1010AY.9.20.000367
S503V503IGttAtt1010B.10.000092
S503V503IGttAtt1010B.1.617.20.000038
S503V503IGttAtt99AY.100.004769
S503V503FGttTtt99B.1.1770.000119
S503V503VgtTgtA99C.370.001045
S503V503CGTtTGt58All0.000001
S503V503CGTTTGC38All0.000001
S503V503VgtTgtA48B.10.000037
S503V503VgtTgtC38B.10.000027
S503V503VgtTgtG18B.10.000009
S503V503VgtTgtC88B.1.177.620.009535
S503V503VgtTgtA58B.1.20.000044
S503V503VgtTgtC28B.1.20.000018
S503V503VgtTgtG18B.1.20.000009
S503V503IGttAtt88B.1.3360.019512
S503V503SGTtAGt37All0.000001
S503V503SGTtTCt27All0
S503V503SGTTTCC17All0
S503V503SGTTTCA17All0
S503V503IGttAtt77AY.30.00007
S503V503IGttAtt77AY.440.000043
S503V503FGttTtt77AY.46.60.000505
S503V503FGttTtt77B.10.000064
S503V503TGTtACt46All0.000001
S503V503TGTTACG26All0
S503V503FGttTtt66AY.4.20.00013
S503V503DgTtgAt66AY.440.000037
S503V503IGttAtt66B.1.1.5190.000238
S503V503FGttTtt66B.1.20.000053
S503V503FGttTtt55AY.1020.000133
S503V503FGttTtt55AY.1190.000177
S503V503VgtTgtC45AY.430.000018
S503V503VgtTgtG15AY.430.000004
S503V503delGTT---55AY.46.60.000361
S503V503VgtTgtC55AY.710.002375
S503V503delGTT---55AY.9.20.000184
S503V503IGttAtt55B.1.2210.000355
S503V503FGttTtt55B.1.5870.009488
S503V503LGttCtt55P.10.000079
S503V503FGttTtt440.222222
S503V503del1Gtt-tt24All0
S503V503del1GtT-tA14All0
S503V503del1gtTgt-14All0
S503V503IGttAtt44AY.200.000155
S503V503IGttAtt44AY.250.000024
S503V503IGttAtt44AY.980.000316
S503V503FGttTtt34B.1.10.000054
S503V503FGtTTtC14B.1.10.000018
S503V503IGttAtt44B.1.1.3070.010127
S503V503FGttTtt44B.1.1.5190.000159
S503V503AgTtgCt34B.1.617.20.000011
S503V503AgTTgCC14B.1.617.20.000004
S503V503del2gTTg--33All0.000001
S503V503YGTTTAC23All0
S503V503YGTtTAt13All0
S503V503VgtTgtC33AY.1030.000019
S503V503IGttAtt33AY.140.000264
S503V503FGttTtt33AY.230.000209
S503V503IGttAtt33AY.260.000085
S503V503FGttTtt33AY.270.000194
S503V503FGttTtt33AY.290.000047
S503V503IGttAtt33AY.290.000047
S503V503delGTT---33AY.30.00003
S503V503FGttTtt33AY.30.00003
S503V503delGTT---33AY.340.000291
S503V503VgtTgtC33AY.360.000445
S503V503IGttAtt23AY.420.00008
S503V503IGtTAtC13AY.420.00004
S503V503delGTT---33AY.440.000018
S503V503delGTT---33AY.750.000168
S503V503IGttAtt23AY.990.002099
S503V503IGtTAtA13AY.990.001049
S503V503delGTT---33B.1.1.70.000003
S503V503AgTtgCt33B.1.1600.000094
S503V503LGtTCtC13B.1.20.000009
S503V503LGtTCtG13B.1.20.000009
S503V503LGttCtt13B.1.20.000009
S503V503VgtTgtG23B.1.3510.000059
S503V503VgtTgtC13B.1.3510.00003
S503V503FGttTtt33B.1.4090.002344
S503V503FGttTtt33B.1.4290.000071
S503V503VgtTgtC33B.1.5960.000261
S503V503LGttCtt33B.1.617.20.000011
S503V503IGttAtt33B.1.6210.000266
S503V503FGttTtt33P.10.000047
S503V503LGttCtt33P.1.20.003468
S503V503FGttTtt33P.1.90.014423
S503V503delGTT---220.111111
S503V503SGTtAGt220.111111
S503V503CGTtTGt220.111111
S503V503IGttAtt220.111111
S503V503EgTTgAG12All0
S503V503EgTTgAA12All0
S503V503delGTT---22AY.1020.000053
S503V503IGttAtt22AY.1020.000053
S503V503AgTtgCt22AY.1030.000012
S503V503IGtTAtA12AY.1130.000142
S503V503IGttAtt12AY.1130.000142
S503V503GgTtgGt22AY.1170.000169
S503V503delGTT---22AY.1200.000074
S503V503IGttAtt22AY.1200.000074
S503V503delGTT---22AY.250.000012
S503V503VgtTgtA22AY.250.000012
S503V503delGTT---22AY.260.000057
S503V503delGTT---22AY.290.000032
S503V503IGttAtt22AY.300.000791
S503V503FGttTtt22AY.34.10.00102
S503V503VgtTgtA22AY.39.10.000079
S503V503AgTtgCt22AY.40.000003
S503V503CGTtTGt22AY.40.000003
S503V503SGTTTCC12AY.40.000002
S503V503SGTtTCt12AY.40.000002
S503V503VgtTgtC22AY.4.20.000043
S503V503delGTT---22AY.420.00008
S503V503IGttAtt12AY.430.000004
S503V503IGtTAtA12AY.430.000004
S503V503del1Gtt-tt12AY.430.000004
S503V503del1gtTgt-12AY.430.000004
S503V503GgTtgGt22AY.440.000012
S503V503FGttTtt22AY.50.000041
S503V503delGTT---22AY.5.40.000553
S503V503FGttTtt22AY.610.00021
S503V503delGTT---22AY.710.00095
S503V503IGttAtt22AY.730.001331
S503V503VgtTgtC22AY.750.000112
S503V503VgtTgtC12AY.75.10.00018
S503V503VgtTgtA12AY.75.10.00018
S503V503IGttAtt22AY.790.002421
S503V503AgTtgCt22AY.80.001212
S503V503delGTT---22AY.840.000875
S503V503FGttTtt22AY.98.10.000097
S503V503FGttTtt22AY.99.20.000184
S503V503LGttCtt22B.1.1.5190.000079
S503V503delGTT---22B.1.1.5190.000079
S503V503GgTtgGt22B.1.1.70.000002
S503V503VgtTgtC22B.1.1600.000062
S503V503AgTtgCt22B.1.1770.000026
S503V503AgTtgCt22B.1.177.440.001038
S503V503IGttAtt12B.1.20.000009
S503V503IGtTAtC12B.1.20.000009
S503V503FGttTtt22B.1.2210.000142
S503V503VgtTgtC22B.1.2580.000133
S503V503FGttTtt22B.1.3510.000059
S503V503VgtTgtC22B.1.4290.000047
S503V503IGttAtt22B.1.4290.000047
S503V503FGttTtt22B.1.617.10.000258
S503V503LGttCtt22B.1.6190.001742
S503V503AgTtgCt22B.1.6280.000705
S503V503VgtTgtA22B.400.000729
S503V503VgtTgtC22P.10.000032
S503V503AgTtgCt22P.10.000032
S503V503AgTtgCt22P.1.170.000324
S503V503FGttTtt22P.1.40.001953
S503V503IGttAtt22P.20.000373
S503V503DgTtgAt110.055556
S503V503YGTtTAt110.055556
S503V503VgtTgtC11A.10.000282
S503V503IGttAtt11A.50.001923
S503V503RGTTAGA11All0
S503V503KGTTAAA11All0
S503V503MGtTAtG11All0
S503V503XGTTTAG11All0
S503V503del2gTTg--11AY.10.000396
S503V503IGttAtt11AY.1000.000046
S503V503delGTT---11AY.1030.000006
S503V503TGTTACG11AY.1030.000006
S503V503delGTT---11AY.1070.000466
S503V503delGTT---11AY.1080.001103
S503V503IGttAtt11AY.1080.001103
S503V503IGttAtt11AY.1090.00074
S503V503FGttTtt11AY.1130.000142
S503V503VgtTgtC11AY.1140.000231
S503V503AgTtgCt11AY.1160.000287
S503V503FGttTtt11AY.1160.000287
S503V503FGttTtt11AY.1170.000085
S503V503delGTT---11AY.1170.000085
S503V503SGTtTCt11AY.1170.000085
S503V503CGTTTGC11AY.1170.000085
S503V503CGTtTGt11AY.1180.000063
S503V503FGttTtt11AY.120.2.10.000498
S503V503VgtTgtG11AY.1210.000135
S503V503FGttTtt11AY.1210.000135
S503V503FGttTtt11AY.140.000088
S503V503FGttTtt11AY.200.000039
S503V503TGTTACG11AY.200.000039
S503V503AgTtgCt11AY.200.000039
S503V503IGttAtt11AY.230.00007
S503V503AgTtgCt11AY.230.00007
S503V503FGttTtt11AY.23.10.000417
S503V503SGTTTCA11AY.250.000006
S503V503LGttCtt11AY.290.000016
S503V503DgTtgAt11AY.290.000016
S503V503delGTT---11AY.29.10.000221
S503V503VgtTgtC11AY.30.00001
S503V503delGTT---11AY.330.000067
S503V503delGTT---11AY.360.000148
S503V503CGTTTGC11AY.390.000025
S503V503YGTTTAC11AY.390.000025
S503V503FGttTtt11AY.39.10.00004
S503V503TGTtACt11AY.40.000002
S503V503GgTTgGA11AY.40.000002
S503V503del2gTTg--11AY.40.000002
S503V503delGTT---11AY.4.20.000022
S503V503TGTtACt11AY.4.20.000022
S503V503IGttAtt11AY.4.50.000107
S503V503IGttAtt11AY.410.000294
S503V503RGTTAGA11AY.420.00004
S503V503YGTTTAC11AY.420.00004
S503V503FGttTtt11AY.420.00004
S503V503KGTTAAA11AY.430.000004
S503V503DgTTgAC11AY.430.000004
S503V503GgTTgGC11AY.430.000004
S503V503EgTTgAG11AY.430.000004
S503V503CGTTTGC11AY.430.000004
S503V503VgtTgtC11AY.440.000006
S503V503VgtTgtC11AY.450.000122
S503V503IGttAtt11AY.450.000122
S503V503delGTT---11AY.450.000122
S503V503FGttTtt11AY.470.000031
S503V503IGttAtt11AY.470.000031
S503V503TGTtACt11AY.50.000021
S503V503delGTT---11AY.50.000021
S503V503FGttTtt11AY.5.40.000277
S503V503FGttTtt11AY.540.000095
S503V503delGTT---11AY.540.000095
S503V503IGttAtt11AY.540.000095
S503V503IGttAtt11AY.550.000917
S503V503VgtTgtA11AY.550.000917
S503V503FGttTtt11AY.560.001605
S503V503delGTT---11AY.60.000041
S503V503AgTtgCt11AY.610.000105
S503V503IGtTAtA11AY.670.000464
S503V503IGttAtt11AY.680.000274
S503V503delGTT---11AY.70.000196
S503V503AgTtgCt11AY.7.10.000113
S503V503FGttTtt11AY.700.000209
S503V503FGttTtt11AY.740.000116
S503V503FGttTtt11AY.75.10.00018
S503V503delGTT---11AY.75.10.00018
S503V503delGTT---11AY.770.001127
S503V503AgTtgCt11AY.850.000427
S503V503AgTtgCt11AY.90.000068
S503V503VgtTgtC11AY.90.000068
S503V503FGttTtt11AY.9.10.000084
S503V503VgtTgtG11AY.9.20.000037
S503V503AgTtgCt11AY.9.20.000037
S503V503del1GtT-tA11AY.9.20.000037
S503V503XGTTTAG11AY.9.20.000037
S503V503delGTT---11AY.910.00073
S503V503delGTT---11AY.940.000443
S503V503GgTTgGA11AY.980.000079
S503V503VgtTgtC11AY.980.000079
S503V503AgTtgCt11AY.98.10.000048
S503V503delGTT---11AY.98.10.000048
S503V503VgtTgtC11AZ.50.003509
S503V503IGttAtt11B0.000128
S503V503LGttCtt11B.10.000009
S503V503delGTT---11B.10.000009
S503V503AgTtgCt11B.10.000009
S503V503delGTT---11B.1.10.000018
S503V503VgtTgtC11B.1.10.000018
S503V503AgTtgCt11B.1.10.000018
S503V503GgTtgGt11B.1.10.000018
S503V503VgtTgtA11B.1.1.280.000311
S503V503FGttTtt11B.1.1.3890.006061
S503V503FGttTtt11B.1.1.390.00051
S503V503delGTT---11B.1.1.390.00051
S503V503FGttTtt11B.1.1.4110.014706
S503V503FGttTtt11B.1.1.4200.001006
S503V503IGttAtt11B.1.1.4200.001006
S503V503TGTtACt11B.1.1.5190.00004
S503V503IGttAtt11B.1.1.5260.003546
S503V503LGttCtt11B.1.1.700.000341
S503V503VgtTgtC11B.1.1.710.006061
S503V503IGttAtt11B.1.1280.000635
S503V503delGTT---11B.1.1600.000031
S503V503IGttAtt11B.1.1770.000013
S503V503delGTT---11B.1.177.120.000152
S503V503VgtTgtA11B.1.177.310.011494
S503V503FGttTtt11B.1.177.70.000165
S503V503VgtTgtC11B.1.177.820.000477
S503V503FGttTtt11B.1.1900.01
S503V503MGtTAtG11B.1.20.000009
S503V503SGTtAGt11B.1.20.000009
S503V503AgTtgCt11B.1.20.000009
S503V503LGttCtt11B.1.2220.001692
S503V503DgTtgAt11B.1.2430.00007
S503V503delGTT---11B.1.2580.000067
S503V503FGttTtt11B.1.258.170.000104
S503V503FGttTtt11B.1.258.70.001912
S503V503IGttAtt11B.1.3110.000275
S503V503FGttTtt11B.1.3290.000608
S503V503delGTT---11B.1.3510.00003
S503V503IGttAtt11B.1.3510.00003
S503V503VgtTgtC11B.1.360.000146
S503V503IGttAtt11B.1.3670.000792
S503V503VgtTgtA11B.1.3690.000285
S503V503VgtTgtC11B.1.3900.010638
S503V503VgtTgtG11B.1.4270.00005
S503V503FGttTtt11B.1.4270.00005
S503V503AgTtgCt11B.1.4290.000024
S503V503IGttAtt11B.1.5150.014493
S503V503VgtTgtC11B.1.5260.000024
S503V503AgTtgCt11B.1.5260.000024
S503V503delGTT---11B.1.5260.000024
S503V503FGttTtt11B.1.5260.000024
S503V503VgtTgtA11B.1.564.10.001577
S503V503IGttAtt11B.1.5820.000491
S503V503VgtTgtC11B.1.5890.007576
S503V503DgTtgAt11B.1.5950.000261
S503V503del1Gtt-tt11B.1.617.20.000004
S503V503EgTTgAA11B.1.617.20.000004
S503V503del2gTTg--11B.1.617.20.000004
S503V503delGTT---11B.1.6200.000946
S503V503FGttTtt11B.1.6210.000089
S503V503FGttTtt11B.1.6280.000352
S503V503LGttCtt11B.1.6370.000073
S503V503FGttTtt11B.230.002924
S503V503delGTT---11B.340.013699
S503V503delGTT---11B.610.005747
S503V503delGTT---11C.170.055556
S503V503VgtTgtC11C.360.000911
S503V503FGttTtt11D.20.000075
S503V503IGttAtt11D.20.000075
S503V503IGttAtt11P.10.000016
S503V503FGttTtt11P.1.140.000048
S503V503FGttTtt11P.20.000187
S503V503delGTT---11Q.80.000165
S503V503IGttAtt11Q.80.000165
S503V503AgTtgCt11Q.80.000165