CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 501 & Codon = aCt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	501	N501T		nonsyn	aAt	aCt	4784	4780	0.999164	23063-23065

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	501	N501T	aAt	aCt	4780	4784	All	0.000914
S	501	N501T	aAt	aCt	2265	2265	B.1.517	0.967122
S	501	N501T	aAt	aCt	508	508	B.1.1	0.009216
S	501	N501T	aAt	aCt	377	377	A.28	0.997354
S	501	N501T	aAt	aCt	237	237	B.1.2	0.002087
S	501	N501T	aAt	aCt	202	202	B.1	0.00185
S	501	N501T	aAt	aCt	174	174	B.1.517.1	0.915789
S	501	N501T	aAt	aCt	172	172	B.1.626	0.982857
S	501	N501T	aAt	aCt	146	146	C.2.1	0.973333
S	501	N501T	aAt	aCt	103	103	B.1.415.1	0.780303
S	501	N501T	aAt	aCt	56	56	P.5	0.767123
S	501	N501T	aAt	aCt	51	51	B.1.243.2	0.73913
S	501	N501T	aAt	aCt	38	38	B.1.609	0.018217
S	501	N501T	aAt	aCt	30	30	B.1.1.318	0.009053
S	501	N501T	aAt	aCt	30	30	C.2	0.483871
S	501	N501T	aAt	aCt	21	21	AY.4	0.000033
S	501	N501T	aAt	aCt	20	20	AY.102	0.00053
S	501	N501T	aAt	aCt	20	20	B.1.36.1	0.022805
S	501	N501T	aAt	aCt	19	19	B.1.1.419	0.140741
S	501	N501T	aAt	aCt	17	17	B.1.221	0.001208
S	501	N501T	aAt	aCt	15	15	C.37	0.001741
S	501	N501T	aAt	aCt	14	14	B.1.165	0.166667
S	501	N501T	aAt	aCt	13	13	AY.26	0.000368
S	501	N501T	aAt	aCt	13	13	B.1.1.1	0.004247
S	501	N501T	aAt	aCt	13	13	B.1.617.2	0.000049
S	501	N501T	aAt	aCt	12	12	B.1.536	0.285714
S	501	N501T	aAt	aCt	11	11	A	0.004257
S	501	N501T	aAt	aCt	11	11	B.1.596	0.000959
S	501	N501T	aAt	aCt	9	9	B.1.1.274	0.045455
S	501	N501T	aAt	aCt	8	8	AY.41	0.002352
S	501	N501T	aAt	aCt	8	8	B.1.1.218	0.061538
S	501	N501T	aAt	aCt	7	7	C.36	0.006375
S	501	N501T	aAt	aCt	6	6	A.2	0.003971
S	501	N501T	aAt	aCt	6	6	B.1.1.33	0.002525
S	501	N501T	aAt	aCt	5	5	AY.103	0.000031
S	501	N501T	aAt	aCt	4	5	AY.43	0.000018
S	501	N501T	aAt	aCt	5	5	B.1.1.214	0.000277
S	501	N501T	aAt	aCt	4	4	AY.29	0.000063
S	501	N501T	aAt	aCt	4	4	AY.33	0.000267
S	501	N501T	aAt	aCt	4	4	AY.42	0.000161
S	501	N501T	aAt	aCt	4	4	B	0.000511
S	501	N501T	aAt	aCt	4	4	B.1.1.28	0.001245
S	501	N501T	aAt	aCt	4	4	B.1.110.3	0.002874
S	501	N501T	aAt	aCt	4	4	B.1.177.81	0.000757
S	501	N501T	aAt	aCt	4	4	B.1.243	0.000278
S	501	N501T	aAt	aCt	4	4	B.1.526	0.000094
S	501	N501T	aAt	aCt	3	3	B.1.1.291	0.002227
S	501	N501T	aAt	aCt	3	3	B.1.1.306	0.001315
S	501	N501T	aAt	aCt	3	3	B.1.1.376	0.017857
S	501	N501T	aAt	aCt	3	3	B.1.177	0.00004
S	501	N501T	aAt	aCt	3	3	B.1.466.2	0.001174
S	501	N501T	aAt	aCt	3	3	B.1.473	0.057692
S	501	N501T	aAt	aCt	3	3	B.1.565	0.002431
S	501	N501T	aAt	aCt	2	2	AY.118	0.000125
S	501	N501T	aAt	aCt	2	2	AY.39	0.000049
S	501	N501T	aAt	aCt	2	2	AY.39.1	0.000079
S	501	N501T	aAt	aCt	2	2	AY.44	0.000012
S	501	N501T	aAt	aCt	2	2	AY.92	0.000575
S	501	N501T	aAt	aCt	2	2	B.1.1.220	0.003717
S	501	N501T	aAt	aCt	2	2	B.1.1.269	0.002706
S	501	N501T	aAt	aCt	2	2	B.1.1.372	0.001377
S	501	N501T	aAt	aCt	2	2	B.1.1.448	0.004065
S	501	N501T	aAt	aCt	2	2	B.1.369	0.00057
S	501	N501T	aAt	aCt	2	2	P.1.12	0.000968
S	501	N501T	aAt	aCt	1	1	A.19	0.009434
S	501	N501T	aAt	aCt	1	1	AY.1	0.000396
S	501	N501T	aAt	aCt	1	1	AY.100	0.000046
S	501	N501T	aAt	aCt	1	1	AY.114	0.000231
S	501	N501T	aAt	aCt	1	1	AY.117	0.000085
S	501	N501T	aAt	aCt	1	1	AY.20	0.000039
S	501	N501T	aAt	aCt	1	1	AY.25	0.000006
S	501	N501T	aAt	aCt	1	1	AY.34.1	0.00051
S	501	N501T	aAt	aCt	1	1	AY.4.2	0.000022
S	501	N501T	aAt	aCt	1	1	AY.47	0.000031
S	501	N501T	aAt	aCt	1	1	AY.54	0.000095
S	501	N501T	aAt	aCt	1	1	AY.57	0.000656
S	501	N501T	aAt	aCt	1	1	AY.61	0.000105
S	501	N501T	aAt	aCt	1	1	AY.9.2	0.000037
S	501	N501T	aAt	aCt	1	1	AY.98	0.000079
S	501	N501T	aAt	aCt	1	1	AY.98.1	0.000048
S	501	N501T	aAt	aCt	1	1	AY.99.2	0.000092
S	501	N501T	aAt	aCt	1	1	B.1.1.161	0.003534
S	501	N501T	aAt	aCt	1	1	B.1.1.207	0.001182
S	501	N501T	aAt	aCt	1	1	B.1.1.219	0.005
S	501	N501T	aAt	aCt	1	1	B.1.1.266	0.012195
S	501	N501T	aAt	aCt	1	1	B.1.1.294	0.001266
S	501	N501T	aAt	aCt	1	1	B.1.1.380	0.009804
S	501	N501T	aAt	aCt	1	1	B.1.1.398	0.003226
S	501	N501T	aAt	aCt	1	1	B.1.1.424	0.045455
S	501	N501T	aAt	aCt	1	1	B.1.1.518	0.006329
S	501	N501T	aAt	aCt	1	1	B.1.1.519	0.00004
S	501	N501T	aAt	aCt	1	1	B.1.1.525	0.005464
S	501	N501T	aAt	aCt	1	1	B.1.1.7	0.000001
S	501	N501T	aAt	aCt	1	1	B.1.104	0.00369
S	501	N501T	aAt	aCt	1	1	B.1.110	0.004525
S	501	N501T	aAt	aCt	1	1	B.1.140	0.018868
S	501	N501T	aAt	aCt	1	1	B.1.157	0.002985
S	501	N501T	aAt	aCt	1	1	B.1.160.16	0.000929
S	501	N501T	aAt	aCt	1	1	B.1.177.50	0.004695
S	501	N501T	aAt	aCt	1	1	B.1.177.73	0.000566
S	501	N501T	aAt	aCt	1	1	B.1.220	0.01087
S	501	N501T	aAt	aCt	1	1	B.1.234	0.000132
S	501	N501T	aAt	aCt	1	1	B.1.241	0.000812
S	501	N501T	aAt	aCt	1	1	B.1.279	0.000514
S	501	N501T	aAt	aCt	1	1	B.1.311	0.000275
S	501	N501T	aAt	aCt	1	1	B.1.324	0.001605
S	501	N501T	aAt	aCt	1	1	B.1.336	0.002439
S	501	N501T	aAt	aCt	1	1	B.1.343	0.020833
S	501	N501T	aAt	aCt	1	1	B.1.351.2	0.000303
S	501	N501T	aAt	aCt	1	1	B.1.36	0.000146
S	501	N501T	aAt	aCt	1	1	B.1.362	0.001541
S	501	N501T	aAt	aCt	1	1	B.1.378	0.006849
S	501	N501T	aAt	aCt	1	1	B.1.400	0.000429
S	501	N501T	aAt	aCt	1	1	B.1.429	0.000024
S	501	N501T	aAt	aCt	1	1	B.1.436	0.001029
S	501	N501T	aAt	aCt	1	1	B.1.567	0.003333
S	501	N501T	aAt	aCt	1	1	B.1.623	0.000536
S	501	N501T	aAt	aCt	1	1	B.52	0.010101
S	501	N501T	aAt	aCt	1	1	C.9	0.030303

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.