CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 501 & Codon = Tat

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	501	N501Y		nonsyn	Aat	Tat	1292974	1292878	0.999926	23063-23065

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	501	N501Y	Aat	Tat	1292878	1292974	All	0.247278
S	501	N501Y	Aat	Tat	1093592	1093681	B.1.1.7	0.979009
S	501	N501Y	Aat	Tat	60663	60663	P.1	0.955684
S	501	N501Y	Aat	Tat	29386	29386	B.1.351	0.873543
S	501	N501Y	Aat	Tat	20528	20528	P.1.14	0.981262
S	501	N501Y	Aat	Tat	10726	10726	B.1.621	0.949456
S	501	N501Y	Aat	Tat	7849	7850	Q.1	0.991536
S	501	N501Y	Aat	Tat	6794	6794	Q.3	0.985352
S	501	N501Y	Aat	Tat	5832	5833	Q.8	0.961741
S	501	N501Y	Aat	Tat	5788	5788	P.1.17	0.936267
S	501	N501Y	Aat	Tat	4318	4318	B.1	0.039551
S	501	N501Y	Aat	Tat	4102	4102	P.1.15	0.953067
S	501	N501Y	Aat	Tat	3514	3514	P.1.10	0.946915
S	501	N501Y	Aat	Tat	2967	2967	P.1.7	0.947318
S	501	N501Y	Aat	Tat	2918	2918	P.1.1	0.926938
S	501	N501Y	Aat	Tat	2916	2916	B.1.351.2	0.8823
S	501	N501Y	Aat	Tat	2745	2745	B.1.1	0.049797
S	501	N501Y	Aat	Tat	2565	2567	P.1.16	0.959596
S	501	N501Y	Aat	Tat	2148	2148	Q.4	0.976808
S	501	N501Y	Aat	Tat	1939	1939	B.1.621.1	0.980779
S	501	N501Y	Aat	Tat	1713	1713	B.1.623	0.918991
S	501	N501Y	Aat	Tat	1630	1630	P.1.12	0.788964
S	501	N501Y	Aat	Tat	1628	1628	Q.2	0.998773
S	501	N501Y	Aat	Tat	1567	1567	B.1.351.5	0.939448
S	501	N501Y	Aat	Tat	1491	1491	B.1.2	0.013129
S	501	N501Y	Aat	Tat	1141	1141	P.1.17.1	0.99825
S	501	N501Y	Aat	Tat	1045	1045	B.1.351.3	0.915863
S	501	N501Y	Aat	Tat	1045	1045	P.1.13	0.938904
S	501	N501Y	Aat	Tat	1013	1013	P.1.4	0.989258
S	501	N501Y	Aat	Tat	889	889	Q.7	0.987778
S	501	N501Y	Aat	Tat	828	828	P.1.2	0.957225
S	501	N501Y	Aat	Tat	653	653	AP.1	0.98048
S	501	N501Y	Aat	Tat	598	598	A.27	0.990066
S	501	N501Y	Aat	Tat	550	553	P.3	0.877193
S	501	N501Y	Aat	Tat	513	513	P.1.6	0.998054
S	501	N501Y	Aat	Tat	250	250	B.1.617.2	0.000941
S	501	N501Y	Aat	Tat	203	203	C.1.2	0.86383
S	501	N501Y	Aat	Tat	201	201	P.1.9	0.966346
S	501	N501Y	Aat	Tat	198	198	P.1.8	0.947368
S	501	N501Y	Aat	Tat	196	196	AY.43	0.000868
S	501	N501Y	Aat	Tat	184	184	B.1.1.189	0.278366
S	501	N501Y	Aat	Tat	182	182	A.29	0.968085
S	501	N501Y	Aat	Tat	167	167	B.1.375	0.136885
S	501	N501Y	Aat	Tat	150	150	Q.6	0.993377
S	501	N501Y	Aat	Tat	132	132	B.1.177.73	0.074745
S	501	N501Y	Aat	Tat	123	123	P.1.10.1	1
S	501	N501Y	Aat	Tat	115	115	B.1.177	0.001514
S	501	N501Y	Aat	Tat	104	104	B.1.576	0.094288
S	501	N501Y	Aat	Tat	99	99	AY.4	0.000154
S	501	N501Y	Aat	Tat	99	99	B.1.596	0.008627
S	501	N501Y	Aat	Tat	94	94	P.1.11	0.959184
S	501	N501Y	Aat	Tat	73	73	B.1.526	0.001716
S	501	N501Y	Aat	Tat	71	71	AY.5	0.001466
S	501	N501Y	Aat	Tat	69	69	B.1.221	0.004901
S	501	N501Y	Aat	Tat	67	67	B.1.1.205	0.249071
S	501	N501Y	Aat	Tat	62	62	B.1.554	0.273128
S	501	N501Y	Aat	Tat	57	57	AY.116	0.016346
S	501	N501Y	Aat	Tat	57	57	B	0.007285
S	501	N501Y	Aat	Tat	56	56	AY.68	0.01533
S	501	N501Y	Aat	Tat	56	56	Q.5	0.949153
S	501	N501Y	Aat	Tat	52	52	AY.44	0.000317
S	501	N501Y	Aat	Tat	52	52	AY.98	0.004108
S	501	N501Y	Aat	Tat	52	52	B.1.160	0.001622
S	501	N501Y	Aat	Tat	49	49	B.1.1.409	0.13881
S	501	N501Y	Aat	Tat	48	48	B.1.604	0.827586
S	501	N501Y	Aat	Tat	47	47	B.1.170	0.202586
S	501	N501Y	Aat	Tat	45	45	XA	1
S	501	N501Y	Aat	Tat	44	44	B.1.1.136	0.93617
S	501	N501Y	Aat	Tat	42	42	B.1.597	0.194444
S	501	N501Y	Aat	Tat	41	41	B.1.1.528	0.197115
S	501	N501Y	Aat	Tat	37	37	B.1.480	0.09204
S	501	N501Y	Aat	Tat	36	36	B.1.126	0.045918
S	501	N501Y	Aat	Tat	36	36	B.1.609	0.017258
S	501	N501Y	Aat	Tat	31	31	B.1.1.28	0.009648
S	501	N501Y	Aat	Tat	31	31	B.1.177.7	0.00511
S	501	N501Y	Aat	Tat	31	31	B.1.429	0.000729
S	501	N501Y	Aat	Tat	30	30	B.1.1.507	0.26087
S	501	N501Y	Aat	Tat	30	30	B.1.324	0.048154
S	501	N501Y	Aat	Tat	29	29	P.1.3	1
S	501	N501Y	Aat	Tat	28	28	B.1.1.161	0.09894
S	501	N501Y	Aat	Tat	28	28	B.1.1.519	0.001112
S	501	N501Y	Aat	Tat	28	28	B.1.311	0.007688
S	501	N501Y	Aat	Tat	28	28	C.37	0.00325
S	501	N501Y	Aat	Tat	27	27	B.1.1.312	0.051625
S	501	N501Y	Aat	Tat	24	24	B.1.214.2	0.014388
S	501	N501Y	Aat	Tat	23	23	B.1.243	0.0016
S	501	N501Y	Aat	Tat	23	23	B.1.530	0.164286
S	501	N501Y	Aat	Tat	23	23	C.36.3.1	0.0625
S	501	N501Y	Aat	Tat	23	23	P.1.10.2	0.958333
S	501	N501Y	Aat	Tat	22	22	A	0.008514
S	501	N501Y	Aat	Tat	22	22	AY.46.6	0.001589
S	501	N501Y	Aat	Tat	22	22	B.1.596.1	0.205607
S	501	N501Y	Aat	Tat	21	21	AY.16.1	0.009868
S	501	N501Y	Aat	Tat	21	21	AY.46.2	0.013342
S	501	N501Y	Aat	Tat	21	21	B.1.36.31	0.036778
S	501	N501Y	Aat	Tat	20	20	B.1.1.306	0.008768
S	501	N501Y	Aat	Tat	20	20	B.1.524	0.028129
S	501	N501Y	Aat	Tat	20	20	B.1.636	0.134228
S	501	N501Y	Aat	Tat	19	19	AY.103	0.000118
S	501	N501Y	Aat	Tat	19	19	AY.42	0.000764
S	501	N501Y	Aat	Tat	19	19	B.1.1.220	0.035316
S	501	N501Y	Aat	Tat	19	19	B.1.258.17	0.001975
S	501	N501Y	Aat	Tat	19	19	B.1.427	0.000959
S	501	N501Y	Aat	Tat	17	17	B.1.177.86	0.003119
S	501	N501Y	Aat	Tat	17	17	B.1.637	0.001242
S	501	N501Y	Aat	Tat	15	15	AY.102	0.000398
S	501	N501Y	Aat	Tat	14	14	AY.39	0.000346
S	501	N501Y	Aat	Tat	14	14	B.1.525	0.001584
S	501	N501Y	Aat	Tat	14	14	B.1.595	0.003653
S	501	N501Y	Aat	Tat	14	14	B.1.620	0.013245
S	501	N501Y	Aat	Tat	14	14	C.39	0.264151
S	501	N501Y	Aat	Tat	13	13	AY.95	0.009893
S	501	N501Y	Aat	Tat	13	13	B.1.367	0.010301
S	501	N501Y	Aat	Tat	13	13	P.1.5	1
S	501	N501Y	Aat	Tat	12	12	A.2.5	0.005988
S	501	N501Y	Aat	Tat	12	12	B.1.258	0.000799
S	501	N501Y	Aat	Tat	12	12	B.1.470	0.016854
S	501	N501Y	Aat	Tat	11	11	AY.120	0.000409
S	501	N501Y	Aat	Tat	11	11	AY.61	0.001153
S	501	N501Y	Aat	Tat	11	11	B.1.1.39	0.005607
S	501	N501Y	Aat	Tat	11	11	B.1.351.1	0.423077
S	501	N501Y	Aat	Tat	11	11	B.1.399	0.021277
S	501	N501Y	Aat	Tat	11	11	B.1.574	0.023656
S	501	N501Y	Aat	Tat	10	10	AY.25	0.00006
S	501	N501Y	Aat	Tat	10	10	AY.9.2	0.000367
S	501	N501Y	Aat	Tat	9	9	AY.113	0.001282
S	501	N501Y	Aat	Tat	9	9	B.1.533	0.086538
S	501	N501Y	Aat	Tat	9	9	B.1.632	0.060403
S	501	N501Y	Aat	Tat	8	8	AY.33	0.000534
S	501	N501Y	Aat	Tat	8	8	B.1.1.50	0.005431
S	501	N501Y	Aat	Tat	8	8	B.1.36	0.001167
S	501	N501Y	Aat	Tat	8	8	B.1.36.1	0.009122
S	501	N501Y	Aat	Tat	8	8	B.1.369	0.002282
S	501	N501Y	Aat	Tat	8	8	B.1.619	0.006969
S	501	N501Y	Aat	Tat	8	8	C.36.3	0.004538
S	501	N501Y	Aat	Tat	7	7	AY.117	0.000592
S	501	N501Y	Aat	Tat	7	7	AY.23	0.000488
S	501	N501Y	Aat	Tat	7	7	AY.71	0.003325
S	501	N501Y	Aat	Tat	7	7	AY.98.1	0.000339
S	501	N501Y	Aat	Tat	7	7	B.1.1.317	0.002882
S	501	N501Y	Aat	Tat	7	7	B.1.580	0.028455
S	501	N501Y	Aat	Tat	6	6		0.333333
S	501	N501Y	Aat	Tat	6	6	AY.20	0.000233
S	501	N501Y	Aat	Tat	6	6	AY.75.1	0.001082
S	501	N501Y	Aat	Tat	6	6	B.1.1.10	0.006689
S	501	N501Y	Aat	Tat	6	6	B.1.1.294	0.007595
S	501	N501Y	Aat	Tat	6	6	B.1.1.372	0.004132
S	501	N501Y	Aat	Tat	6	6	B.1.177.31	0.068966
S	501	N501Y	Aat	Tat	6	6	B.1.438.1	0.000644
S	501	N501Y	Aat	Tat	6	6	B.1.605	0.035714
S	501	N501Y	Aat	Tat	6	6	B.1.8	0.011834
S	501	N501Y	Aat	Tat	6	6	R.1	0.00054
S	501	N501Y	Aat	Tat	5	5	AY.1	0.001979
S	501	N501Y	Aat	Tat	5	5	AY.36	0.000741
S	501	N501Y	Aat	Tat	5	5	AY.70	0.001043
S	501	N501Y	Aat	Tat	5	5	B.1.1.1	0.001633
S	501	N501Y	Aat	Tat	5	5	B.1.1.370	0.063291
S	501	N501Y	Aat	Tat	5	5	B.1.1.523	0.007812
S	501	N501Y	Aat	Tat	5	5	B.1.1.525	0.027322
S	501	N501Y	Aat	Tat	5	5	B.1.1.99	0.119048
S	501	N501Y	Aat	Tat	5	5	B.1.139	0.003666
S	501	N501Y	Aat	Tat	5	5	B.1.157	0.014925
S	501	N501Y	Aat	Tat	5	5	B.1.240	0.001078
S	501	N501Y	Aat	Tat	5	5	B.1.349	0.003574
S	501	N501Y	Aat	Tat	5	5	B.1.411	0.018519
S	501	N501Y	Aat	Tat	5	5	B.1.486	0.555556
S	501	N501Y	Aat	Tat	5	5	B.1.599	0.018248
S	501	N501Y	Aat	Tat	5	5	B.1.617.1	0.000645
S	501	N501Y	Aat	Tat	5	5	B.1.628	0.001762
S	501	N501Y	Aat	Tat	5	5	B.1.634	0.017123
S	501	N501Y	Aat	Tat	4	4	AY.26	0.000113
S	501	N501Y	Aat	Tat	4	4	AY.3	0.00004
S	501	N501Y	Aat	Tat	4	4	AY.45	0.000487
S	501	N501Y	Aat	Tat	4	4	B.1.1.389	0.024242
S	501	N501Y	Aat	Tat	4	4	B.1.1.413	0.027586
S	501	N501Y	Aat	Tat	4	4	B.1.1.432	0.005063
S	501	N501Y	Aat	Tat	4	4	B.1.214	0.014652
S	501	N501Y	Aat	Tat	4	4	B.1.575	0.001214
S	501	N501Y	Aat	Tat	4	4	C.16	0.004242
S	501	N501Y	Aat	Tat	4	4	C.35	0.003096
S	501	N501Y	Aat	Tat	4	4	P.5	0.054795
S	501	N501Y	Aat	Tat	3	3	A.2	0.001985
S	501	N501Y	Aat	Tat	3	3	A.23	0.031579
S	501	N501Y	Aat	Tat	3	3	AV.1	0.015152
S	501	N501Y	Aat	Tat	3	3	AY.120.2	0.003856
S	501	N501Y	Aat	Tat	3	3	AY.29	0.000047
S	501	N501Y	Aat	Tat	3	3	AY.30	0.001187
S	501	N501Y	Aat	Tat	3	3	B.1.1.148	0.026316
S	501	N501Y	Aat	Tat	3	3	B.1.1.318	0.000905
S	501	N501Y	Aat	Tat	3	3	B.1.1.524	0.0625
S	501	N501Y	Aat	Tat	3	3	B.1.1.70	0.001023
S	501	N501Y	Aat	Tat	3	3	B.1.177.50	0.014085
S	501	N501Y	Aat	Tat	3	3	B.1.177.79	0.007026
S	501	N501Y	Aat	Tat	3	3	B.1.330	0.085714
S	501	N501Y	Aat	Tat	3	3	B.1.36.7	0.012
S	501	N501Y	Aat	Tat	3	3	B.1.416	0.003807
S	501	N501Y	Aat	Tat	3	3	B.1.417	0.085714
S	501	N501Y	Aat	Tat	3	3	B.1.564	0.001278
S	501	N501Y	Aat	Tat	3	3	B.55	0.00885
S	501	N501Y	Aat	Tat	3	3	N.5	0.0053
S	501	N501Y	Aat	Tat	2	2	A.1	0.000564
S	501	N501Y	Aat	Tat	2	2	A.2.5.2	0.003145
S	501	N501Y	Aat	Tat	2	2	AT.1	0.010256
S	501	N501Y	Aat	Tat	2	2	AU.2	0.004843
S	501	N501Y	Aat	Tat	2	2	AY.100	0.000092
S	501	N501Y	Aat	Tat	2	2	AY.105	0.001286
S	501	N501Y	Aat	Tat	2	2	AY.120.2.1	0.000997
S	501	N501Y	Aat	Tat	2	2	AY.121	0.000271
S	501	N501Y	Aat	Tat	2	2	AY.34.1	0.00102
S	501	N501Y	Aat	Tat	2	2	AY.35	0.000466
S	501	N501Y	Aat	Tat	2	2	AY.41	0.000588
S	501	N501Y	Aat	Tat	2	2	AY.46	0.000208
S	501	N501Y	Aat	Tat	2	2	AY.46.4	0.000329
S	501	N501Y	Aat	Tat	2	2	AY.5.4	0.000553
S	501	N501Y	Aat	Tat	2	2	AY.53	0.000575
S	501	N501Y	Aat	Tat	2	2	AY.59	0.001059
S	501	N501Y	Aat	Tat	2	2	AY.6	0.000082
S	501	N501Y	Aat	Tat	2	2	AY.67	0.000929
S	501	N501Y	Aat	Tat	2	2	AY.7.2	0.001119
S	501	N501Y	Aat	Tat	2	2	AY.75	0.000112
S	501	N501Y	Aat	Tat	2	2	AY.78	0.003082
S	501	N501Y	Aat	Tat	2	2	AY.84	0.000875
S	501	N501Y	Aat	Tat	2	2	AY.9.1	0.000167
S	501	N501Y	Aat	Tat	2	2	AY.99.2	0.000184
S	501	N501Y	Aat	Tat	2	2	AZ.3	0.00304
S	501	N501Y	Aat	Tat	2	2	B.1.1.141	0.004024
S	501	N501Y	Aat	Tat	2	2	B.1.1.142	0.035088
S	501	N501Y	Aat	Tat	2	2	B.1.1.171	0.007353
S	501	N501Y	Aat	Tat	2	2	B.1.1.216	0.001781
S	501	N501Y	Aat	Tat	2	2	B.1.1.236	0.013793
S	501	N501Y	Aat	Tat	2	2	B.1.1.241	0.004141
S	501	N501Y	Aat	Tat	2	2	B.1.1.25	0.001137
S	501	N501Y	Aat	Tat	2	2	B.1.1.254	0.022472
S	501	N501Y	Aat	Tat	2	2	B.1.1.277	0.001517
S	501	N501Y	Aat	Tat	2	2	B.1.1.291	0.001485
S	501	N501Y	Aat	Tat	2	2	B.1.1.299	0.02439
S	501	N501Y	Aat	Tat	2	2	B.1.1.343	0.041667
S	501	N501Y	Aat	Tat	2	2	B.1.1.37	0.000386
S	501	N501Y	Aat	Tat	2	2	B.1.1.375	0.02381
S	501	N501Y	Aat	Tat	2	2	B.1.1.402	0.022222
S	501	N501Y	Aat	Tat	2	2	B.1.1.44	0.004819
S	501	N501Y	Aat	Tat	2	2	B.1.1.464	0.002946
S	501	N501Y	Aat	Tat	2	2	B.1.1.54	0.006042
S	501	N501Y	Aat	Tat	2	2	B.1.1.83	0.00542
S	501	N501Y	Aat	Tat	2	2	B.1.110.3	0.001437
S	501	N501Y	Aat	Tat	2	2	B.1.177.21	0.000153
S	501	N501Y	Aat	Tat	2	2	B.1.177.4	0.000422
S	501	N501Y	Aat	Tat	2	2	B.1.177.42	0.001789
S	501	N501Y	Aat	Tat	2	2	B.1.177.81	0.000379
S	501	N501Y	Aat	Tat	2	2	B.1.177.82	0.000955
S	501	N501Y	Aat	Tat	2	2	B.1.214.3	0.014286
S	501	N501Y	Aat	Tat	2	2	B.1.234	0.000264
S	501	N501Y	Aat	Tat	2	2	B.1.241	0.001623
S	501	N501Y	Aat	Tat	2	2	B.1.258.14	0.001961
S	501	N501Y	Aat	Tat	2	2	B.1.320	0.002491
S	501	N501Y	Aat	Tat	2	2	B.1.361	0.002577
S	501	N501Y	Aat	Tat	2	2	B.1.380	0.013245
S	501	N501Y	Aat	Tat	2	2	B.1.459	0.008163
S	501	N501Y	Aat	Tat	2	2	B.1.466.2	0.000782
S	501	N501Y	Aat	Tat	2	2	B.1.517	0.000854
S	501	N501Y	Aat	Tat	2	2	B.1.577	0.001375
S	501	N501Y	Aat	Tat	2	2	B.1.627	0.00404
S	501	N501Y	Aat	Tat	2	2	B.1.633	0.083333
S	501	N501Y	Aat	Tat	2	2	B.1.638	0.105263
S	501	N501Y	Aat	Tat	2	2	C.1	0.004785
S	501	N501Y	Aat	Tat	2	2	C.36	0.001821
S	501	N501Y	Aat	Tat	2	2	C.37.1	0.005236
S	501	N501Y	Aat	Tat	2	2	P.2	0.000373
S	501	N501Y	Aat	Tat	1	1	A.23.1	0.000704
S	501	N501Y	Aat	Tat	1	1	A.30	0.142857
S	501	N501Y	Aat	Tat	1	1	AA.7	0.009174
S	501	N501Y	Aat	Tat	1	1	AD.1	0.004115
S	501	N501Y	Aat	Tat	1	1	AD.2	0.000219
S	501	N501Y	Aat	Tat	1	1	AH.3	0.003802
S	501	N501Y	Aat	Tat	1	1	AS.2	0.015625
S	501	N501Y	Aat	Tat	1	1	AY.106	0.000335
S	501	N501Y	Aat	Tat	1	1	AY.109	0.00074
S	501	N501Y	Aat	Tat	1	1	AY.110	0.000113
S	501	N501Y	Aat	Tat	1	1	AY.119	0.000035
S	501	N501Y	Aat	Tat	1	1	AY.14	0.000088
S	501	N501Y	Aat	Tat	1	1	AY.19	0.00114
S	501	N501Y	Aat	Tat	1	1	AY.2	0.000356
S	501	N501Y	Aat	Tat	1	1	AY.21	0.001898
S	501	N501Y	Aat	Tat	1	1	AY.24	0.000431
S	501	N501Y	Aat	Tat	1	1	AY.39.1	0.00004
S	501	N501Y	Aat	Tat	1	1	AY.4.2	0.000022
S	501	N501Y	Aat	Tat	1	1	AY.4.4	0.000409
S	501	N501Y	Aat	Tat	1	1	AY.40	0.000964
S	501	N501Y	Aat	Tat	1	1	AY.47	0.000031
S	501	N501Y	Aat	Tat	1	1	AY.52	0.000814
S	501	N501Y	Aat	Tat	1	1	AY.55	0.000917
S	501	N501Y	Aat	Tat	1	1	AY.60	0.000938
S	501	N501Y	Aat	Tat	1	1	AY.62	0.000436
S	501	N501Y	Aat	Tat	1	1	AY.73	0.000665
S	501	N501Y	Aat	Tat	1	1	AY.76	0.004831
S	501	N501Y	Aat	Tat	1	1	AY.9	0.000068
S	501	N501Y	Aat	Tat	1	1	AZ.2	0.000821
S	501	N501Y	Aat	Tat	1	1	B.1.1.117	0.009709
S	501	N501Y	Aat	Tat	1	1	B.1.1.13	0.035714
S	501	N501Y	Aat	Tat	1	1	B.1.1.135	0.004695
S	501	N501Y	Aat	Tat	1	1	B.1.1.160	0.02381
S	501	N501Y	Aat	Tat	1	1	B.1.1.187	0.00885
S	501	N501Y	Aat	Tat	1	1	B.1.1.198	0.001468
S	501	N501Y	Aat	Tat	1	1	B.1.1.207	0.001182
S	501	N501Y	Aat	Tat	1	1	B.1.1.221	0.010101
S	501	N501Y	Aat	Tat	1	1	B.1.1.222	0.000204
S	501	N501Y	Aat	Tat	1	1	B.1.1.229	0.005747
S	501	N501Y	Aat	Tat	1	1	B.1.1.231	0.003096
S	501	N501Y	Aat	Tat	1	1	B.1.1.232	0.001815
S	501	N501Y	Aat	Tat	1	1	B.1.1.237	0.005405
S	501	N501Y	Aat	Tat	1	1	B.1.1.265	0.003155
S	501	N501Y	Aat	Tat	1	1	B.1.1.269	0.001353
S	501	N501Y	Aat	Tat	1	1	B.1.1.302	0.002075
S	501	N501Y	Aat	Tat	1	1	B.1.1.311	0.000358
S	501	N501Y	Aat	Tat	1	1	B.1.1.327	0.1
S	501	N501Y	Aat	Tat	1	1	B.1.1.328	0.016949
S	501	N501Y	Aat	Tat	1	1	B.1.1.34	0.013158
S	501	N501Y	Aat	Tat	1	1	B.1.1.348	0.000796
S	501	N501Y	Aat	Tat	1	1	B.1.1.367	0.055556
S	501	N501Y	Aat	Tat	1	1	B.1.1.374	0.002375
S	501	N501Y	Aat	Tat	1	1	B.1.1.419	0.007407
S	501	N501Y	Aat	Tat	1	1	B.1.1.448	0.002033
S	501	N501Y	Aat	Tat	1	1	B.1.1.462	0.008621
S	501	N501Y	Aat	Tat	1	1	B.1.1.521	0.005348
S	501	N501Y	Aat	Tat	1	1	B.1.1.526	0.003546
S	501	N501Y	Aat	Tat	1	1	B.1.1.55	0.012987
S	501	N501Y	Aat	Tat	1	1	B.1.1.56	0.017857
S	501	N501Y	Aat	Tat	1	1	B.1.1.63	0.000386
S	501	N501Y	Aat	Tat	1	1	B.1.1.89	0.006061
S	501	N501Y	Aat	Tat	1	1	B.1.104	0.00369
S	501	N501Y	Aat	Tat	1	1	B.1.160.16	0.000929
S	501	N501Y	Aat	Tat	1	1	B.1.160.33	0.004425
S	501	N501Y	Aat	Tat	1	1	B.1.177.15	0.000631
S	501	N501Y	Aat	Tat	1	1	B.1.177.19	0.001431
S	501	N501Y	Aat	Tat	1	1	B.1.177.32	0.00135
S	501	N501Y	Aat	Tat	1	1	B.1.177.44	0.000519
S	501	N501Y	Aat	Tat	1	1	B.1.177.51	0.004566
S	501	N501Y	Aat	Tat	1	1	B.1.177.54	0.000606
S	501	N501Y	Aat	Tat	1	1	B.1.177.56	0.000668
S	501	N501Y	Aat	Tat	1	1	B.1.177.58	0.001332
S	501	N501Y	Aat	Tat	1	1	B.1.177.60	0.000218
S	501	N501Y	Aat	Tat	1	1	B.1.177.80	0.001912
S	501	N501Y	Aat	Tat	1	1	B.1.177.87	0.000728
S	501	N501Y	Aat	Tat	1	1	B.1.179	0.003759
S	501	N501Y	Aat	Tat	1	1	B.1.206	0.000816
S	501	N501Y	Aat	Tat	1	1	B.1.212	0.016667
S	501	N501Y	Aat	Tat	1	1	B.1.239	0.001221
S	501	N501Y	Aat	Tat	1	1	B.1.265	0.001271
S	501	N501Y	Aat	Tat	1	1	B.1.3	0.002618
S	501	N501Y	Aat	Tat	1	1	B.1.343	0.020833
S	501	N501Y	Aat	Tat	1	1	B.1.354	0.043478
S	501	N501Y	Aat	Tat	1	1	B.1.36.10	0.004785
S	501	N501Y	Aat	Tat	1	1	B.1.36.17	0.000494
S	501	N501Y	Aat	Tat	1	1	B.1.36.8	0.001
S	501	N501Y	Aat	Tat	1	1	B.1.39	0.003906
S	501	N501Y	Aat	Tat	1	1	B.1.391	0.001127
S	501	N501Y	Aat	Tat	1	1	B.1.393	0.028571
S	501	N501Y	Aat	Tat	1	1	B.1.400.1	0.015152
S	501	N501Y	Aat	Tat	1	1	B.1.415.1	0.007576
S	501	N501Y	Aat	Tat	1	1	B.1.432	0.011236
S	501	N501Y	Aat	Tat	1	1	B.1.433	0.003195
S	501	N501Y	Aat	Tat	1	1	B.1.441	0.009615
S	501	N501Y	Aat	Tat	1	1	B.1.445	0.011765
S	501	N501Y	Aat	Tat	1	1	B.1.462	0.007246
S	501	N501Y	Aat	Tat	1	1	B.1.469	0.00361
S	501	N501Y	Aat	Tat	1	1	B.1.473	0.019231
S	501	N501Y	Aat	Tat	1	1	B.1.497	0.000315
S	501	N501Y	Aat	Tat	1	1	B.1.505	0.004386
S	501	N501Y	Aat	Tat	1	1	B.1.506	0.02381
S	501	N501Y	Aat	Tat	1	1	B.1.523	0.002451
S	501	N501Y	Aat	Tat	1	1	B.1.545	0.014493
S	501	N501Y	Aat	Tat	1	1	B.1.548	0.035714
S	501	N501Y	Aat	Tat	1	1	B.1.549	0.007194
S	501	N501Y	Aat	Tat	1	1	B.1.565	0.00081
S	501	N501Y	Aat	Tat	1	1	B.1.567	0.003333
S	501	N501Y	Aat	Tat	1	1	B.1.601	0.030303
S	501	N501Y	Aat	Tat	1	1	B.1.625	0.002353
S	501	N501Y	Aat	Tat	1	1	B.1.630	0.005236
S	501	N501Y	Aat	Tat	1	1	B.1.78	0.008547
S	501	N501Y	Aat	Tat	1	1	B.1.91	0.002075
S	501	N501Y	Aat	Tat	1	1	B.1.94	0.027027
S	501	N501Y	Aat	Tat	1	1	B.35	0.007812
S	501	N501Y	Aat	Tat	1	1	B.4	0.002208
S	501	N501Y	Aat	Tat	1	1	C.38	0.008065
S	501	N501Y	Aat	Tat	1	1	N.6	0.007092
S	501	N501Y	Aat	Tat	1	1	N.8	0.03125
S	501	N501Y	Aat	Tat	1	1	N.9	0.005952

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.