CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 493

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S493Q493EnonsynCaaGaa674674123039-23041
S493Q493RnonsyncAacGa2822760.97872323039-23041
S493Q493RnonsynCAaAGa28260.021276623039-23041
S493Q493LnonsyncAacTa2052040.99512223039-23041
S493Q493LnonsyncAAcTG20510.0048780523039-23041
S493Q493KnonsynCaaAaa176176123039-23041
S493Q493QsyncaAcaG154154123039-23041
S493Q493HnonsyncaAcaC94720.76595723039-23041
S493Q493HnonsyncaAcaT94220.23404323039-23041
S493Q493XnonsynCaaTaa36340.94444423039-23041
S493Q493XnonsynCAaTGa3620.055555623039-23041
S493Q493deldelCAA---3333123039-23041
S493Q493PnonsyncAacCa3030123039-23041
S493Q493YnonsynCaATaC55123039-23041
S493Q493TnonsynCAaACa44123039-23041
S493Q493del1delcAac-a420.523039-23041
S493Q493del1delCaa-aa420.523039-23041
S493Q493InonsynCAaATa33123039-23041
S493Q493del2delCAa--a11123039-23041
S493Q493AnonsynCAAGCT11123039-23041

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S493Q493ECaaGaa674674All0.000129
S493Q493ECaaGaa381381AY.40.000593
S493Q493RcAacGa276282All0.000053
S493Q493RCAaAGa6282All0.000001
S493Q493LcAacTa204205All0.000039
S493Q493LcAAcTG1205All0
S493Q493RcAacGa202204B.1.1.70.000181
S493Q493RCAaAGa2204B.1.1.70.000002
S493Q493ECaaGaa203203AY.490.648562
S493Q493KCaaAaa176176All0.000034
S493Q493QcaAcaG154154All0.000029
S493Q493KCaaAaa107107B.1.1.70.000096
S493Q493HcaAcaC7294All0.000014
S493Q493HcaAcaT2294All0.000004
S493Q493QcaAcaG3838B.1.4970.011961
S493Q493QcaAcaG3737B.1.1.70.000033
S493Q493XCaaTaa3436All0.000007
S493Q493XCAaTGa236All0
S493Q493LcAacTa3636AY.540.003432
S493Q493delCAA---3333All0.000006
S493Q493PcAacCa3030All0.000006
S493Q493HcaAcaC2929B.1.1.70.000026
S493Q493LcAacTa2323B.1.1.70.000021
S493Q493LcAacTa2121AY.40.000033
S493Q493LcAacTa2121B.10.000192
S493Q493ECaaGaa1919B.1.617.20.000072
S493Q493PcAacCa1818AY.440.00011
S493Q493ECaaGaa1717AY.30.000169
S493Q493QcaAcaG1313B.1.177.610.565217
S493Q493HcaAcaC612AY.40.000009
S493Q493HcaAcaT612AY.40.000009
S493Q493QcaAcaG1212B.1.2340.001583
S493Q493KCaaAaa1111B.1.10.0002
S493Q493KCaaAaa1111B.1.5170.004697
S493Q493RcAacGa811B.1.5170.003416
S493Q493RCAaAGa311B.1.5170.001281
S493Q493QcaAcaG1111B.1.617.20.000041
S493Q493LcAacTa1010B.1.617.20.000038
S493Q493RcAacGa99B.1.20.000079
S493Q493QcaAcaG88AY.1000.000368
S493Q493delCAA---77AY.430.000031
S493Q493ECaaGaa77AY.46.30.006536
S493Q493LcAacTa77B.1.1770.000092
S493Q493RcAacGa77B.1.5650.005673
S493Q493LcAacTa66AY.430.000027
S493Q493LcAacTa66B.1.20.000053
S493Q493KCaaAaa66B.1.2400.001293
S493Q493LcAacTa66P.10.000095
S493Q493YCaATaC55All0.000001
S493Q493LcAacTa55AY.440.00003
S493Q493ECaaGaa55AY.46.20.003177
S493Q493ECaaGaa55AY.99.10.007764
S493Q493XCaaTaa55B.1.1.70.000004
S493Q493KCaaAaa55B.1.20.000044
S493Q493HcaAcaC45B.1.4270.000202
S493Q493HcaAcaT15B.1.4270.00005
S493Q493HcaAcaC55B.1.617.20.000019
S493Q493LcAacTa55B.1.6370.000365
S493Q493TCAaACa44All0.000001
S493Q493del1cAac-a24All0
S493Q493del1Caa-aa24All0
S493Q493LcAacTa44AY.1030.000025
S493Q493HcaAcaT34AY.1030.000019
S493Q493HcaAcaC14AY.1030.000006
S493Q493KCaaAaa44AY.40.000006
S493Q493ECaaGaa44AY.430.000018
S493Q493XCaaTaa34AY.430.000013
S493Q493XCAaTGa14AY.430.000004
S493Q493ECaaGaa44AY.440.000024
S493Q493RcAacGa44AY.440.000024
S493Q493RcAacGa44B.10.000037
S493Q493XCaaTaa34B.10.000027
S493Q493XCAaTGa14B.10.000009
S493Q493LcAacTa44B.1.1080.023256
S493Q493ICAaATa33All0.000001
S493Q493RcAacGa33AY.1030.000019
S493Q493LcAacTa33AY.1200.000112
S493Q493ECaaGaa33AY.130.000483
S493Q493HcaAcaC33AY.140.000264
S493Q493LcAacTa33AY.30.00003
S493Q493RcAacGa33AY.30.00003
S493Q493HcaAcaC33AY.30.00003
S493Q493LcAacTa33AY.320.001597
S493Q493ECaaGaa33AY.390.000074
S493Q493QcaAcaG33AY.40.000005
S493Q493QcaAcaG33AY.430.000013
S493Q493QcaAcaG33AY.980.000237
S493Q493KCaaAaa33B.10.000027
S493Q493LcAacTa33B.1.10.000054
S493Q493QcaAcaG33B.1.10.000054
S493Q493QcaAcaG33B.1.1770.00004
S493Q493RcAacGa33B.1.3690.000856
S493Q493KCaaAaa33B.1.4860.333333
S493Q493RcAacGa33B.1.5260.000071
S493Q493RcAacGa33B.1.5960.000261
S493Q493KCaaAaa33B.1.6230.001609
S493Q493ICAaATa220.111111
S493Q493QcaAcaG220.111111
S493Q493XCaaTaa220.111111
S493Q493HcaAcaC220.111111
S493Q493LcAacTa220.111111
S493Q493delCAA---220.111111
S493Q493KCaaAaa220.111111
S493Q493YCaATaC220.111111
S493Q493KCaaAaa22AY.1030.000012
S493Q493PcAacCa22AY.1190.000071
S493Q493HcaAcaT22AY.200.000078
S493Q493ECaaGaa22AY.220.004184
S493Q493QcaAcaG22AY.250.000012
S493Q493ECaaGaa22AY.250.000012
S493Q493XCaaTaa22AY.40.000003
S493Q493PcAacCa22AY.430.000009
S493Q493YCaATaC22AY.430.000009
S493Q493KCaaAaa22AY.440.000012
S493Q493HcaAcaC22AY.46.50.000397
S493Q493ECaaGaa22AY.540.000191
S493Q493HcaAcaC22AY.610.00021
S493Q493delCAA---22AY.750.000112
S493Q493QcaAcaG22AY.750.000112
S493Q493RCAaAGa12B.1.10.000018
S493Q493RcAacGa12B.1.10.000018
S493Q493LcAacTa22B.1.1.2650.006309
S493Q493ECaaGaa22B.1.1.70.000002
S493Q493delCAA---22B.1.1.70.000002
S493Q493RcAacGa22B.1.1600.000062
S493Q493KCaaAaa22B.1.1600.000062
S493Q493HcaAcaC22B.1.1770.000026
S493Q493LcAacTa22B.1.177.360.032258
S493Q493LcAacTa22B.1.177.430.002954
S493Q493LcAacTa22B.1.2060.001631
S493Q493RcAacGa22B.1.2400.000431
S493Q493LcAacTa22B.1.2430.000139
S493Q493LcAacTa22B.1.360.000292
S493Q493ECaaGaa22B.1.3690.00057
S493Q493RcAacGa22B.1.617.20.000008
S493Q493PcAacCa22B.1.617.20.000008
S493Q493XCaaTaa22B.1.617.20.000008
S493Q493RcAacGa22B.400.000729
S493Q493RcAacGa22Q.70.002222
S493Q493LcAacTa11A0.000387
S493Q493del1Caa-aa11A.10.000282
S493Q493HcaAcaT11A.23.10.000704
S493Q493LcAacTa11AD.20.000219
S493Q493del2CAa--a11All0
S493Q493ACAAGCT11All0
S493Q493TCAaACa11AY.1020.000027
S493Q493delCAA---11AY.1020.000027
S493Q493delCAA---11AY.1030.000006
S493Q493ECaaGaa11AY.1030.000006
S493Q493delCAA---11AY.1070.000466
S493Q493delCAA---11AY.1080.001103
S493Q493QcaAcaG11AY.1090.00074
S493Q493delCAA---11AY.1130.000142
S493Q493HcaAcaC11AY.1140.000231
S493Q493ECaaGaa11AY.1140.000231
S493Q493ECaaGaa11AY.1160.000287
S493Q493LcAacTa11AY.1170.000085
S493Q493HcaAcaC11AY.1200.000037
S493Q493KCaaAaa11AY.160.00038
S493Q493XCaaTaa11AY.200.000039
S493Q493RcAacGa11AY.200.000039
S493Q493LcAacTa11AY.23.10.000417
S493Q493HcaAcaC11AY.240.000431
S493Q493LcAacTa11AY.250.000006
S493Q493delCAA---11AY.250.000006
S493Q493RcAacGa11AY.250.000006
S493Q493QcaAcaG11AY.260.000028
S493Q493PcAacCa11AY.260.000028
S493Q493LcAacTa11AY.3.10.000085
S493Q493PcAacCa11AY.3.10.000085
S493Q493XCaaTaa11AY.340.000097
S493Q493LcAacTa11AY.380.000499
S493Q493LcAacTa11AY.390.000025
S493Q493HcaAcaC11AY.39.10.00004
S493Q493RcAacGa11AY.40.000002
S493Q493delCAA---11AY.40.000002
S493Q493HcaAcaC11AY.4.20.000022
S493Q493LcAacTa11AY.4.50.000107
S493Q493LcAacTa11AY.420.00004
S493Q493QcaAcaG11AY.420.00004
S493Q493KCaaAaa11AY.430.000004
S493Q493RcAacGa11AY.430.000004
S493Q493del2CAa--a11AY.430.000004
S493Q493HcaAcaT11AY.430.000004
S493Q493XCaaTaa11AY.440.000006
S493Q493QcaAcaG11AY.440.000006
S493Q493HcaAcaC11AY.440.000006
S493Q493ECaaGaa11AY.450.000122
S493Q493delCAA---11AY.46.60.000072
S493Q493LcAAcTG11AY.50.000021
S493Q493XCaaTaa11AY.50.000021
S493Q493ECaaGaa11AY.50.000021
S493Q493ECaaGaa11AY.5.30.000337
S493Q493ECaaGaa11AY.580.000907
S493Q493LcAacTa11AY.60.000041
S493Q493ECaaGaa11AY.60.000041
S493Q493QcaAcaG11AY.610.000105
S493Q493LcAacTa11AY.620.000436
S493Q493ECaaGaa11AY.650.000533
S493Q493delCAA---11AY.670.000464
S493Q493HcaAcaT11AY.730.000665
S493Q493ECaaGaa11AY.750.000056
S493Q493LcAacTa11AY.780.001541
S493Q493ECaaGaa11AY.9.10.000084
S493Q493delCAA---11AY.9.20.000037
S493Q493QcaAcaG11AY.9.20.000037
S493Q493RcAacGa11AY.920.000287
S493Q493HcaAcaC11AY.99.20.000092
S493Q493LcAacTa11B0.000128
S493Q493del1Caa-aa11B.10.000009
S493Q493delCAA---11B.10.000009
S493Q493HcaAcaT11B.10.000009
S493Q493QcaAcaG11B.10.000009
S493Q493XCaaTaa11B.1.10.000018
S493Q493ECaaGaa11B.1.10.000018
S493Q493delCAA---11B.1.10.000018
S493Q493PcAacCa11B.1.10.000018
S493Q493TCAaACa11B.1.10.000018
S493Q493ICAaATa11B.1.10.000018
S493Q493HcaAcaC11B.1.10.000018
S493Q493delCAA---11B.1.1.1390.022727
S493Q493KCaaAaa11B.1.1.2140.000055
S493Q493RcAacGa11B.1.1.2220.000204
S493Q493XCaaTaa11B.1.1.260.005236
S493Q493LcAacTa11B.1.1.2610.008621
S493Q493QcaAcaG11B.1.1.280.000311
S493Q493YCaATaC11B.1.1.3060.000438
S493Q493QcaAcaG11B.1.1.3170.000412
S493Q493KCaaAaa11B.1.1.370.000193
S493Q493delCAA---11B.1.1.390.00051
S493Q493HcaAcaC11B.1.1.4640.001473
S493Q493LcAacTa11B.1.1.5190.00004
S493Q493XCaaTaa11B.1.1.5190.00004
S493Q493XCaaTaa11B.1.1.610.008772
S493Q493PcAacCa11B.1.1.70.000001
S493Q493XCaaTaa11B.1.1130.015625
S493Q493RcAacGa11B.1.1390.000733
S493Q493TCAaACa11B.1.1600.000031
S493Q493KCaaAaa11B.1.1770.000013
S493Q493LcAacTa11B.1.177.120.000152
S493Q493LcAacTa11B.1.177.180.00116
S493Q493HcaAcaT11B.1.177.320.00135
S493Q493delCAA---11B.1.177.40.000211
S493Q493KCaaAaa11B.1.177.440.000519
S493Q493LcAacTa11B.1.177.460.000918
S493Q493XCaaTaa11B.1.177.600.000218
S493Q493KCaaAaa11B.1.177.70.000165
S493Q493LcAacTa11B.1.177.700.005917
S493Q493del1cAac-a11B.1.20.000009
S493Q493XCaaTaa11B.1.20.000009
S493Q493delCAA---11B.1.20.000009
S493Q493HcaAcaT11B.1.2340.000132
S493Q493RcAacGa11B.1.2430.00007
S493Q493HcaAcaT11B.1.2580.000067
S493Q493QcaAcaG11B.1.2580.000067
S493Q493RcAacGa11B.1.2580.000067
S493Q493KCaaAaa11B.1.258.170.000104
S493Q493XCaaTaa11B.1.3240.001605
S493Q493delCAA---11B.1.3510.00003
S493Q493HcaAcaC11B.1.3510.00003
S493Q493KCaaAaa11B.1.3510.00003
S493Q493QcaAcaG11B.1.351.30.000876
S493Q493HcaAcaC11B.1.36.220.001208
S493Q493KCaaAaa11B.1.3620.001541
S493Q493XCaaTaa11B.1.3670.000792
S493Q493KCaaAaa11B.1.3990.001934
S493Q493HcaAcaC11B.1.4260.001009
S493Q493LcAacTa11B.1.4280.00102
S493Q493KCaaAaa11B.1.4290.000024
S493Q493HcaAcaT11B.1.4290.000024
S493Q493XCaaTaa11B.1.438.10.000107
S493Q493LcAacTa11B.1.4700.001404
S493Q493KCaaAaa11B.1.5210.004975
S493Q493LcAacTa11B.1.5260.000024
S493Q493delCAA---11B.1.5260.000024
S493Q493QcaAcaG11B.1.5260.000024
S493Q493RcAacGa11B.1.5610.000397
S493Q493XCaaTaa11B.1.5640.000426
S493Q493HcaAcaT11B.1.5680.001111
S493Q493RcAacGa11B.1.5750.000303
S493Q493RcAacGa11B.1.5770.000687
S493Q493XCaaTaa11B.1.5820.000491
S493Q493QcaAcaG11B.1.5820.000491
S493Q493RcAacGa11B.1.6020.006536
S493Q493del1cAac-a11B.1.617.20.000004
S493Q493ACAAGCT11B.1.617.20.000004
S493Q493TCAaACa11B.1.617.20.000004
S493Q493delCAA---11B.1.6200.000946
S493Q493LcAacTa11B.1.6280.000352
S493Q493PcAacCa11B.1.6370.000073
S493Q493HcaAcaC11B.1.6370.000073
S493Q493delCAA---11B.340.013699
S493Q493HcaAcaT11D.20.000075
S493Q493PcAacCa11D.20.000075
S493Q493XCaaTaa11D.20.000075
S493Q493RcAacGa11P.10.000016
S493Q493KCaaAaa11P.1.120.000484
S493Q493ECaaGaa11P.1.150.000232
S493Q493RcAacGa11P.1.160.000374
S493Q493RcAacGa11Q.40.000455
S493Q493KCaaAaa11Q.80.000165
S493Q493QcaAcaG11Q.80.000165