CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 493 | Q493E | nonsyn | Caa | Gaa | 674 | 674 | 1 | 23039-23041 | |
S | 493 | Q493R | nonsyn | cAa | cGa | 282 | 276 | 0.978723 | 23039-23041 | |
S | 493 | Q493R | nonsyn | CAa | AGa | 282 | 6 | 0.0212766 | 23039-23041 | |
S | 493 | Q493L | nonsyn | cAa | cTa | 205 | 204 | 0.995122 | 23039-23041 | |
S | 493 | Q493L | nonsyn | cAA | cTG | 205 | 1 | 0.00487805 | 23039-23041 | |
S | 493 | Q493K | nonsyn | Caa | Aaa | 176 | 176 | 1 | 23039-23041 | |
S | 493 | Q493Q | syn | caA | caG | 154 | 154 | 1 | 23039-23041 | |
S | 493 | Q493H | nonsyn | caA | caC | 94 | 72 | 0.765957 | 23039-23041 | |
S | 493 | Q493H | nonsyn | caA | caT | 94 | 22 | 0.234043 | 23039-23041 | |
S | 493 | Q493X | nonsyn | Caa | Taa | 36 | 34 | 0.944444 | 23039-23041 | |
S | 493 | Q493X | nonsyn | CAa | TGa | 36 | 2 | 0.0555556 | 23039-23041 | |
S | 493 | Q493del | del | CAA | --- | 33 | 33 | 1 | 23039-23041 | |
S | 493 | Q493P | nonsyn | cAa | cCa | 30 | 30 | 1 | 23039-23041 | |
S | 493 | Q493Y | nonsyn | CaA | TaC | 5 | 5 | 1 | 23039-23041 | |
S | 493 | Q493T | nonsyn | CAa | ACa | 4 | 4 | 1 | 23039-23041 | |
S | 493 | Q493del1 | del | cAa | c-a | 4 | 2 | 0.5 | 23039-23041 | |
S | 493 | Q493del1 | del | Caa | -aa | 4 | 2 | 0.5 | 23039-23041 | |
S | 493 | Q493I | nonsyn | CAa | ATa | 3 | 3 | 1 | 23039-23041 | |
S | 493 | Q493del2 | del | CAa | --a | 1 | 1 | 1 | 23039-23041 | |
S | 493 | Q493A | nonsyn | CAA | GCT | 1 | 1 | 1 | 23039-23041 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 493 | Q493E | Caa | Gaa | 674 | 674 | All | 0.000129 |
S | 493 | Q493E | Caa | Gaa | 381 | 381 | AY.4 | 0.000593 |
S | 493 | Q493R | cAa | cGa | 276 | 282 | All | 0.000053 |
S | 493 | Q493R | CAa | AGa | 6 | 282 | All | 0.000001 |
S | 493 | Q493L | cAa | cTa | 204 | 205 | All | 0.000039 |
S | 493 | Q493L | cAA | cTG | 1 | 205 | All | 0 |
S | 493 | Q493R | cAa | cGa | 202 | 204 | B.1.1.7 | 0.000181 |
S | 493 | Q493R | CAa | AGa | 2 | 204 | B.1.1.7 | 0.000002 |
S | 493 | Q493E | Caa | Gaa | 203 | 203 | AY.49 | 0.648562 |
S | 493 | Q493K | Caa | Aaa | 176 | 176 | All | 0.000034 |
S | 493 | Q493Q | caA | caG | 154 | 154 | All | 0.000029 |
S | 493 | Q493K | Caa | Aaa | 107 | 107 | B.1.1.7 | 0.000096 |
S | 493 | Q493H | caA | caC | 72 | 94 | All | 0.000014 |
S | 493 | Q493H | caA | caT | 22 | 94 | All | 0.000004 |
S | 493 | Q493Q | caA | caG | 38 | 38 | B.1.497 | 0.011961 |
S | 493 | Q493Q | caA | caG | 37 | 37 | B.1.1.7 | 0.000033 |
S | 493 | Q493X | Caa | Taa | 34 | 36 | All | 0.000007 |
S | 493 | Q493X | CAa | TGa | 2 | 36 | All | 0 |
S | 493 | Q493L | cAa | cTa | 36 | 36 | AY.54 | 0.003432 |
S | 493 | Q493del | CAA | --- | 33 | 33 | All | 0.000006 |
S | 493 | Q493P | cAa | cCa | 30 | 30 | All | 0.000006 |
S | 493 | Q493H | caA | caC | 29 | 29 | B.1.1.7 | 0.000026 |
S | 493 | Q493L | cAa | cTa | 23 | 23 | B.1.1.7 | 0.000021 |
S | 493 | Q493L | cAa | cTa | 21 | 21 | AY.4 | 0.000033 |
S | 493 | Q493L | cAa | cTa | 21 | 21 | B.1 | 0.000192 |
S | 493 | Q493E | Caa | Gaa | 19 | 19 | B.1.617.2 | 0.000072 |
S | 493 | Q493P | cAa | cCa | 18 | 18 | AY.44 | 0.00011 |
S | 493 | Q493E | Caa | Gaa | 17 | 17 | AY.3 | 0.000169 |
S | 493 | Q493Q | caA | caG | 13 | 13 | B.1.177.61 | 0.565217 |
S | 493 | Q493H | caA | caC | 6 | 12 | AY.4 | 0.000009 |
S | 493 | Q493H | caA | caT | 6 | 12 | AY.4 | 0.000009 |
S | 493 | Q493Q | caA | caG | 12 | 12 | B.1.234 | 0.001583 |
S | 493 | Q493K | Caa | Aaa | 11 | 11 | B.1.1 | 0.0002 |
S | 493 | Q493K | Caa | Aaa | 11 | 11 | B.1.517 | 0.004697 |
S | 493 | Q493R | cAa | cGa | 8 | 11 | B.1.517 | 0.003416 |
S | 493 | Q493R | CAa | AGa | 3 | 11 | B.1.517 | 0.001281 |
S | 493 | Q493Q | caA | caG | 11 | 11 | B.1.617.2 | 0.000041 |
S | 493 | Q493L | cAa | cTa | 10 | 10 | B.1.617.2 | 0.000038 |
S | 493 | Q493R | cAa | cGa | 9 | 9 | B.1.2 | 0.000079 |
S | 493 | Q493Q | caA | caG | 8 | 8 | AY.100 | 0.000368 |
S | 493 | Q493del | CAA | --- | 7 | 7 | AY.43 | 0.000031 |
S | 493 | Q493E | Caa | Gaa | 7 | 7 | AY.46.3 | 0.006536 |
S | 493 | Q493L | cAa | cTa | 7 | 7 | B.1.177 | 0.000092 |
S | 493 | Q493R | cAa | cGa | 7 | 7 | B.1.565 | 0.005673 |
S | 493 | Q493L | cAa | cTa | 6 | 6 | AY.43 | 0.000027 |
S | 493 | Q493L | cAa | cTa | 6 | 6 | B.1.2 | 0.000053 |
S | 493 | Q493K | Caa | Aaa | 6 | 6 | B.1.240 | 0.001293 |
S | 493 | Q493L | cAa | cTa | 6 | 6 | P.1 | 0.000095 |
S | 493 | Q493Y | CaA | TaC | 5 | 5 | All | 0.000001 |
S | 493 | Q493L | cAa | cTa | 5 | 5 | AY.44 | 0.00003 |
S | 493 | Q493E | Caa | Gaa | 5 | 5 | AY.46.2 | 0.003177 |
S | 493 | Q493E | Caa | Gaa | 5 | 5 | AY.99.1 | 0.007764 |
S | 493 | Q493X | Caa | Taa | 5 | 5 | B.1.1.7 | 0.000004 |
S | 493 | Q493K | Caa | Aaa | 5 | 5 | B.1.2 | 0.000044 |
S | 493 | Q493H | caA | caC | 4 | 5 | B.1.427 | 0.000202 |
S | 493 | Q493H | caA | caT | 1 | 5 | B.1.427 | 0.00005 |
S | 493 | Q493H | caA | caC | 5 | 5 | B.1.617.2 | 0.000019 |
S | 493 | Q493L | cAa | cTa | 5 | 5 | B.1.637 | 0.000365 |
S | 493 | Q493T | CAa | ACa | 4 | 4 | All | 0.000001 |
S | 493 | Q493del1 | cAa | c-a | 2 | 4 | All | 0 |
S | 493 | Q493del1 | Caa | -aa | 2 | 4 | All | 0 |
S | 493 | Q493L | cAa | cTa | 4 | 4 | AY.103 | 0.000025 |
S | 493 | Q493H | caA | caT | 3 | 4 | AY.103 | 0.000019 |
S | 493 | Q493H | caA | caC | 1 | 4 | AY.103 | 0.000006 |
S | 493 | Q493K | Caa | Aaa | 4 | 4 | AY.4 | 0.000006 |
S | 493 | Q493E | Caa | Gaa | 4 | 4 | AY.43 | 0.000018 |
S | 493 | Q493X | Caa | Taa | 3 | 4 | AY.43 | 0.000013 |
S | 493 | Q493X | CAa | TGa | 1 | 4 | AY.43 | 0.000004 |
S | 493 | Q493E | Caa | Gaa | 4 | 4 | AY.44 | 0.000024 |
S | 493 | Q493R | cAa | cGa | 4 | 4 | AY.44 | 0.000024 |
S | 493 | Q493R | cAa | cGa | 4 | 4 | B.1 | 0.000037 |
S | 493 | Q493X | Caa | Taa | 3 | 4 | B.1 | 0.000027 |
S | 493 | Q493X | CAa | TGa | 1 | 4 | B.1 | 0.000009 |
S | 493 | Q493L | cAa | cTa | 4 | 4 | B.1.108 | 0.023256 |
S | 493 | Q493I | CAa | ATa | 3 | 3 | All | 0.000001 |
S | 493 | Q493R | cAa | cGa | 3 | 3 | AY.103 | 0.000019 |
S | 493 | Q493L | cAa | cTa | 3 | 3 | AY.120 | 0.000112 |
S | 493 | Q493E | Caa | Gaa | 3 | 3 | AY.13 | 0.000483 |
S | 493 | Q493H | caA | caC | 3 | 3 | AY.14 | 0.000264 |
S | 493 | Q493L | cAa | cTa | 3 | 3 | AY.3 | 0.00003 |
S | 493 | Q493R | cAa | cGa | 3 | 3 | AY.3 | 0.00003 |
S | 493 | Q493H | caA | caC | 3 | 3 | AY.3 | 0.00003 |
S | 493 | Q493L | cAa | cTa | 3 | 3 | AY.32 | 0.001597 |
S | 493 | Q493E | Caa | Gaa | 3 | 3 | AY.39 | 0.000074 |
S | 493 | Q493Q | caA | caG | 3 | 3 | AY.4 | 0.000005 |
S | 493 | Q493Q | caA | caG | 3 | 3 | AY.43 | 0.000013 |
S | 493 | Q493Q | caA | caG | 3 | 3 | AY.98 | 0.000237 |
S | 493 | Q493K | Caa | Aaa | 3 | 3 | B.1 | 0.000027 |
S | 493 | Q493L | cAa | cTa | 3 | 3 | B.1.1 | 0.000054 |
S | 493 | Q493Q | caA | caG | 3 | 3 | B.1.1 | 0.000054 |
S | 493 | Q493Q | caA | caG | 3 | 3 | B.1.177 | 0.00004 |
S | 493 | Q493R | cAa | cGa | 3 | 3 | B.1.369 | 0.000856 |
S | 493 | Q493K | Caa | Aaa | 3 | 3 | B.1.486 | 0.333333 |
S | 493 | Q493R | cAa | cGa | 3 | 3 | B.1.526 | 0.000071 |
S | 493 | Q493R | cAa | cGa | 3 | 3 | B.1.596 | 0.000261 |
S | 493 | Q493K | Caa | Aaa | 3 | 3 | B.1.623 | 0.001609 |
S | 493 | Q493I | CAa | ATa | 2 | 2 | 0.111111 | |
S | 493 | Q493Q | caA | caG | 2 | 2 | 0.111111 | |
S | 493 | Q493X | Caa | Taa | 2 | 2 | 0.111111 | |
S | 493 | Q493H | caA | caC | 2 | 2 | 0.111111 | |
S | 493 | Q493L | cAa | cTa | 2 | 2 | 0.111111 | |
S | 493 | Q493del | CAA | --- | 2 | 2 | 0.111111 | |
S | 493 | Q493K | Caa | Aaa | 2 | 2 | 0.111111 | |
S | 493 | Q493Y | CaA | TaC | 2 | 2 | 0.111111 | |
S | 493 | Q493K | Caa | Aaa | 2 | 2 | AY.103 | 0.000012 |
S | 493 | Q493P | cAa | cCa | 2 | 2 | AY.119 | 0.000071 |
S | 493 | Q493H | caA | caT | 2 | 2 | AY.20 | 0.000078 |
S | 493 | Q493E | Caa | Gaa | 2 | 2 | AY.22 | 0.004184 |
S | 493 | Q493Q | caA | caG | 2 | 2 | AY.25 | 0.000012 |
S | 493 | Q493E | Caa | Gaa | 2 | 2 | AY.25 | 0.000012 |
S | 493 | Q493X | Caa | Taa | 2 | 2 | AY.4 | 0.000003 |
S | 493 | Q493P | cAa | cCa | 2 | 2 | AY.43 | 0.000009 |
S | 493 | Q493Y | CaA | TaC | 2 | 2 | AY.43 | 0.000009 |
S | 493 | Q493K | Caa | Aaa | 2 | 2 | AY.44 | 0.000012 |
S | 493 | Q493H | caA | caC | 2 | 2 | AY.46.5 | 0.000397 |
S | 493 | Q493E | Caa | Gaa | 2 | 2 | AY.54 | 0.000191 |
S | 493 | Q493H | caA | caC | 2 | 2 | AY.61 | 0.00021 |
S | 493 | Q493del | CAA | --- | 2 | 2 | AY.75 | 0.000112 |
S | 493 | Q493Q | caA | caG | 2 | 2 | AY.75 | 0.000112 |
S | 493 | Q493R | CAa | AGa | 1 | 2 | B.1.1 | 0.000018 |
S | 493 | Q493R | cAa | cGa | 1 | 2 | B.1.1 | 0.000018 |
S | 493 | Q493L | cAa | cTa | 2 | 2 | B.1.1.265 | 0.006309 |
S | 493 | Q493E | Caa | Gaa | 2 | 2 | B.1.1.7 | 0.000002 |
S | 493 | Q493del | CAA | --- | 2 | 2 | B.1.1.7 | 0.000002 |
S | 493 | Q493R | cAa | cGa | 2 | 2 | B.1.160 | 0.000062 |
S | 493 | Q493K | Caa | Aaa | 2 | 2 | B.1.160 | 0.000062 |
S | 493 | Q493H | caA | caC | 2 | 2 | B.1.177 | 0.000026 |
S | 493 | Q493L | cAa | cTa | 2 | 2 | B.1.177.36 | 0.032258 |
S | 493 | Q493L | cAa | cTa | 2 | 2 | B.1.177.43 | 0.002954 |
S | 493 | Q493L | cAa | cTa | 2 | 2 | B.1.206 | 0.001631 |
S | 493 | Q493R | cAa | cGa | 2 | 2 | B.1.240 | 0.000431 |
S | 493 | Q493L | cAa | cTa | 2 | 2 | B.1.243 | 0.000139 |
S | 493 | Q493L | cAa | cTa | 2 | 2 | B.1.36 | 0.000292 |
S | 493 | Q493E | Caa | Gaa | 2 | 2 | B.1.369 | 0.00057 |
S | 493 | Q493R | cAa | cGa | 2 | 2 | B.1.617.2 | 0.000008 |
S | 493 | Q493P | cAa | cCa | 2 | 2 | B.1.617.2 | 0.000008 |
S | 493 | Q493X | Caa | Taa | 2 | 2 | B.1.617.2 | 0.000008 |
S | 493 | Q493R | cAa | cGa | 2 | 2 | B.40 | 0.000729 |
S | 493 | Q493R | cAa | cGa | 2 | 2 | Q.7 | 0.002222 |
S | 493 | Q493L | cAa | cTa | 1 | 1 | A | 0.000387 |
S | 493 | Q493del1 | Caa | -aa | 1 | 1 | A.1 | 0.000282 |
S | 493 | Q493H | caA | caT | 1 | 1 | A.23.1 | 0.000704 |
S | 493 | Q493L | cAa | cTa | 1 | 1 | AD.2 | 0.000219 |
S | 493 | Q493del2 | CAa | --a | 1 | 1 | All | 0 |
S | 493 | Q493A | CAA | GCT | 1 | 1 | All | 0 |
S | 493 | Q493T | CAa | ACa | 1 | 1 | AY.102 | 0.000027 |
S | 493 | Q493del | CAA | --- | 1 | 1 | AY.102 | 0.000027 |
S | 493 | Q493del | CAA | --- | 1 | 1 | AY.103 | 0.000006 |
S | 493 | Q493E | Caa | Gaa | 1 | 1 | AY.103 | 0.000006 |
S | 493 | Q493del | CAA | --- | 1 | 1 | AY.107 | 0.000466 |
S | 493 | Q493del | CAA | --- | 1 | 1 | AY.108 | 0.001103 |
S | 493 | Q493Q | caA | caG | 1 | 1 | AY.109 | 0.00074 |
S | 493 | Q493del | CAA | --- | 1 | 1 | AY.113 | 0.000142 |
S | 493 | Q493H | caA | caC | 1 | 1 | AY.114 | 0.000231 |
S | 493 | Q493E | Caa | Gaa | 1 | 1 | AY.114 | 0.000231 |
S | 493 | Q493E | Caa | Gaa | 1 | 1 | AY.116 | 0.000287 |
S | 493 | Q493L | cAa | cTa | 1 | 1 | AY.117 | 0.000085 |
S | 493 | Q493H | caA | caC | 1 | 1 | AY.120 | 0.000037 |
S | 493 | Q493K | Caa | Aaa | 1 | 1 | AY.16 | 0.00038 |
S | 493 | Q493X | Caa | Taa | 1 | 1 | AY.20 | 0.000039 |
S | 493 | Q493R | cAa | cGa | 1 | 1 | AY.20 | 0.000039 |
S | 493 | Q493L | cAa | cTa | 1 | 1 | AY.23.1 | 0.000417 |
S | 493 | Q493H | caA | caC | 1 | 1 | AY.24 | 0.000431 |
S | 493 | Q493L | cAa | cTa | 1 | 1 | AY.25 | 0.000006 |
S | 493 | Q493del | CAA | --- | 1 | 1 | AY.25 | 0.000006 |
S | 493 | Q493R | cAa | cGa | 1 | 1 | AY.25 | 0.000006 |
S | 493 | Q493Q | caA | caG | 1 | 1 | AY.26 | 0.000028 |
S | 493 | Q493P | cAa | cCa | 1 | 1 | AY.26 | 0.000028 |
S | 493 | Q493L | cAa | cTa | 1 | 1 | AY.3.1 | 0.000085 |
S | 493 | Q493P | cAa | cCa | 1 | 1 | AY.3.1 | 0.000085 |
S | 493 | Q493X | Caa | Taa | 1 | 1 | AY.34 | 0.000097 |
S | 493 | Q493L | cAa | cTa | 1 | 1 | AY.38 | 0.000499 |
S | 493 | Q493L | cAa | cTa | 1 | 1 | AY.39 | 0.000025 |
S | 493 | Q493H | caA | caC | 1 | 1 | AY.39.1 | 0.00004 |
S | 493 | Q493R | cAa | cGa | 1 | 1 | AY.4 | 0.000002 |
S | 493 | Q493del | CAA | --- | 1 | 1 | AY.4 | 0.000002 |
S | 493 | Q493H | caA | caC | 1 | 1 | AY.4.2 | 0.000022 |
S | 493 | Q493L | cAa | cTa | 1 | 1 | AY.4.5 | 0.000107 |
S | 493 | Q493L | cAa | cTa | 1 | 1 | AY.42 | 0.00004 |
S | 493 | Q493Q | caA | caG | 1 | 1 | AY.42 | 0.00004 |
S | 493 | Q493K | Caa | Aaa | 1 | 1 | AY.43 | 0.000004 |
S | 493 | Q493R | cAa | cGa | 1 | 1 | AY.43 | 0.000004 |
S | 493 | Q493del2 | CAa | --a | 1 | 1 | AY.43 | 0.000004 |
S | 493 | Q493H | caA | caT | 1 | 1 | AY.43 | 0.000004 |
S | 493 | Q493X | Caa | Taa | 1 | 1 | AY.44 | 0.000006 |
S | 493 | Q493Q | caA | caG | 1 | 1 | AY.44 | 0.000006 |
S | 493 | Q493H | caA | caC | 1 | 1 | AY.44 | 0.000006 |
S | 493 | Q493E | Caa | Gaa | 1 | 1 | AY.45 | 0.000122 |
S | 493 | Q493del | CAA | --- | 1 | 1 | AY.46.6 | 0.000072 |
S | 493 | Q493L | cAA | cTG | 1 | 1 | AY.5 | 0.000021 |
S | 493 | Q493X | Caa | Taa | 1 | 1 | AY.5 | 0.000021 |
S | 493 | Q493E | Caa | Gaa | 1 | 1 | AY.5 | 0.000021 |
S | 493 | Q493E | Caa | Gaa | 1 | 1 | AY.5.3 | 0.000337 |
S | 493 | Q493E | Caa | Gaa | 1 | 1 | AY.58 | 0.000907 |
S | 493 | Q493L | cAa | cTa | 1 | 1 | AY.6 | 0.000041 |
S | 493 | Q493E | Caa | Gaa | 1 | 1 | AY.6 | 0.000041 |
S | 493 | Q493Q | caA | caG | 1 | 1 | AY.61 | 0.000105 |
S | 493 | Q493L | cAa | cTa | 1 | 1 | AY.62 | 0.000436 |
S | 493 | Q493E | Caa | Gaa | 1 | 1 | AY.65 | 0.000533 |
S | 493 | Q493del | CAA | --- | 1 | 1 | AY.67 | 0.000464 |
S | 493 | Q493H | caA | caT | 1 | 1 | AY.73 | 0.000665 |
S | 493 | Q493E | Caa | Gaa | 1 | 1 | AY.75 | 0.000056 |
S | 493 | Q493L | cAa | cTa | 1 | 1 | AY.78 | 0.001541 |
S | 493 | Q493E | Caa | Gaa | 1 | 1 | AY.9.1 | 0.000084 |
S | 493 | Q493del | CAA | --- | 1 | 1 | AY.9.2 | 0.000037 |
S | 493 | Q493Q | caA | caG | 1 | 1 | AY.9.2 | 0.000037 |
S | 493 | Q493R | cAa | cGa | 1 | 1 | AY.92 | 0.000287 |
S | 493 | Q493H | caA | caC | 1 | 1 | AY.99.2 | 0.000092 |
S | 493 | Q493L | cAa | cTa | 1 | 1 | B | 0.000128 |
S | 493 | Q493del1 | Caa | -aa | 1 | 1 | B.1 | 0.000009 |
S | 493 | Q493del | CAA | --- | 1 | 1 | B.1 | 0.000009 |
S | 493 | Q493H | caA | caT | 1 | 1 | B.1 | 0.000009 |
S | 493 | Q493Q | caA | caG | 1 | 1 | B.1 | 0.000009 |
S | 493 | Q493X | Caa | Taa | 1 | 1 | B.1.1 | 0.000018 |
S | 493 | Q493E | Caa | Gaa | 1 | 1 | B.1.1 | 0.000018 |
S | 493 | Q493del | CAA | --- | 1 | 1 | B.1.1 | 0.000018 |
S | 493 | Q493P | cAa | cCa | 1 | 1 | B.1.1 | 0.000018 |
S | 493 | Q493T | CAa | ACa | 1 | 1 | B.1.1 | 0.000018 |
S | 493 | Q493I | CAa | ATa | 1 | 1 | B.1.1 | 0.000018 |
S | 493 | Q493H | caA | caC | 1 | 1 | B.1.1 | 0.000018 |
S | 493 | Q493del | CAA | --- | 1 | 1 | B.1.1.139 | 0.022727 |
S | 493 | Q493K | Caa | Aaa | 1 | 1 | B.1.1.214 | 0.000055 |
S | 493 | Q493R | cAa | cGa | 1 | 1 | B.1.1.222 | 0.000204 |
S | 493 | Q493X | Caa | Taa | 1 | 1 | B.1.1.26 | 0.005236 |
S | 493 | Q493L | cAa | cTa | 1 | 1 | B.1.1.261 | 0.008621 |
S | 493 | Q493Q | caA | caG | 1 | 1 | B.1.1.28 | 0.000311 |
S | 493 | Q493Y | CaA | TaC | 1 | 1 | B.1.1.306 | 0.000438 |
S | 493 | Q493Q | caA | caG | 1 | 1 | B.1.1.317 | 0.000412 |
S | 493 | Q493K | Caa | Aaa | 1 | 1 | B.1.1.37 | 0.000193 |
S | 493 | Q493del | CAA | --- | 1 | 1 | B.1.1.39 | 0.00051 |
S | 493 | Q493H | caA | caC | 1 | 1 | B.1.1.464 | 0.001473 |
S | 493 | Q493L | cAa | cTa | 1 | 1 | B.1.1.519 | 0.00004 |
S | 493 | Q493X | Caa | Taa | 1 | 1 | B.1.1.519 | 0.00004 |
S | 493 | Q493X | Caa | Taa | 1 | 1 | B.1.1.61 | 0.008772 |
S | 493 | Q493P | cAa | cCa | 1 | 1 | B.1.1.7 | 0.000001 |
S | 493 | Q493X | Caa | Taa | 1 | 1 | B.1.113 | 0.015625 |
S | 493 | Q493R | cAa | cGa | 1 | 1 | B.1.139 | 0.000733 |
S | 493 | Q493T | CAa | ACa | 1 | 1 | B.1.160 | 0.000031 |
S | 493 | Q493K | Caa | Aaa | 1 | 1 | B.1.177 | 0.000013 |
S | 493 | Q493L | cAa | cTa | 1 | 1 | B.1.177.12 | 0.000152 |
S | 493 | Q493L | cAa | cTa | 1 | 1 | B.1.177.18 | 0.00116 |
S | 493 | Q493H | caA | caT | 1 | 1 | B.1.177.32 | 0.00135 |
S | 493 | Q493del | CAA | --- | 1 | 1 | B.1.177.4 | 0.000211 |
S | 493 | Q493K | Caa | Aaa | 1 | 1 | B.1.177.44 | 0.000519 |
S | 493 | Q493L | cAa | cTa | 1 | 1 | B.1.177.46 | 0.000918 |
S | 493 | Q493X | Caa | Taa | 1 | 1 | B.1.177.60 | 0.000218 |
S | 493 | Q493K | Caa | Aaa | 1 | 1 | B.1.177.7 | 0.000165 |
S | 493 | Q493L | cAa | cTa | 1 | 1 | B.1.177.70 | 0.005917 |
S | 493 | Q493del1 | cAa | c-a | 1 | 1 | B.1.2 | 0.000009 |
S | 493 | Q493X | Caa | Taa | 1 | 1 | B.1.2 | 0.000009 |
S | 493 | Q493del | CAA | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 493 | Q493H | caA | caT | 1 | 1 | B.1.234 | 0.000132 |
S | 493 | Q493R | cAa | cGa | 1 | 1 | B.1.243 | 0.00007 |
S | 493 | Q493H | caA | caT | 1 | 1 | B.1.258 | 0.000067 |
S | 493 | Q493Q | caA | caG | 1 | 1 | B.1.258 | 0.000067 |
S | 493 | Q493R | cAa | cGa | 1 | 1 | B.1.258 | 0.000067 |
S | 493 | Q493K | Caa | Aaa | 1 | 1 | B.1.258.17 | 0.000104 |
S | 493 | Q493X | Caa | Taa | 1 | 1 | B.1.324 | 0.001605 |
S | 493 | Q493del | CAA | --- | 1 | 1 | B.1.351 | 0.00003 |
S | 493 | Q493H | caA | caC | 1 | 1 | B.1.351 | 0.00003 |
S | 493 | Q493K | Caa | Aaa | 1 | 1 | B.1.351 | 0.00003 |
S | 493 | Q493Q | caA | caG | 1 | 1 | B.1.351.3 | 0.000876 |
S | 493 | Q493H | caA | caC | 1 | 1 | B.1.36.22 | 0.001208 |
S | 493 | Q493K | Caa | Aaa | 1 | 1 | B.1.362 | 0.001541 |
S | 493 | Q493X | Caa | Taa | 1 | 1 | B.1.367 | 0.000792 |
S | 493 | Q493K | Caa | Aaa | 1 | 1 | B.1.399 | 0.001934 |
S | 493 | Q493H | caA | caC | 1 | 1 | B.1.426 | 0.001009 |
S | 493 | Q493L | cAa | cTa | 1 | 1 | B.1.428 | 0.00102 |
S | 493 | Q493K | Caa | Aaa | 1 | 1 | B.1.429 | 0.000024 |
S | 493 | Q493H | caA | caT | 1 | 1 | B.1.429 | 0.000024 |
S | 493 | Q493X | Caa | Taa | 1 | 1 | B.1.438.1 | 0.000107 |
S | 493 | Q493L | cAa | cTa | 1 | 1 | B.1.470 | 0.001404 |
S | 493 | Q493K | Caa | Aaa | 1 | 1 | B.1.521 | 0.004975 |
S | 493 | Q493L | cAa | cTa | 1 | 1 | B.1.526 | 0.000024 |
S | 493 | Q493del | CAA | --- | 1 | 1 | B.1.526 | 0.000024 |
S | 493 | Q493Q | caA | caG | 1 | 1 | B.1.526 | 0.000024 |
S | 493 | Q493R | cAa | cGa | 1 | 1 | B.1.561 | 0.000397 |
S | 493 | Q493X | Caa | Taa | 1 | 1 | B.1.564 | 0.000426 |
S | 493 | Q493H | caA | caT | 1 | 1 | B.1.568 | 0.001111 |
S | 493 | Q493R | cAa | cGa | 1 | 1 | B.1.575 | 0.000303 |
S | 493 | Q493R | cAa | cGa | 1 | 1 | B.1.577 | 0.000687 |
S | 493 | Q493X | Caa | Taa | 1 | 1 | B.1.582 | 0.000491 |
S | 493 | Q493Q | caA | caG | 1 | 1 | B.1.582 | 0.000491 |
S | 493 | Q493R | cAa | cGa | 1 | 1 | B.1.602 | 0.006536 |
S | 493 | Q493del1 | cAa | c-a | 1 | 1 | B.1.617.2 | 0.000004 |
S | 493 | Q493A | CAA | GCT | 1 | 1 | B.1.617.2 | 0.000004 |
S | 493 | Q493T | CAa | ACa | 1 | 1 | B.1.617.2 | 0.000004 |
S | 493 | Q493del | CAA | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 493 | Q493L | cAa | cTa | 1 | 1 | B.1.628 | 0.000352 |
S | 493 | Q493P | cAa | cCa | 1 | 1 | B.1.637 | 0.000073 |
S | 493 | Q493H | caA | caC | 1 | 1 | B.1.637 | 0.000073 |
S | 493 | Q493del | CAA | --- | 1 | 1 | B.34 | 0.013699 |
S | 493 | Q493H | caA | caT | 1 | 1 | D.2 | 0.000075 |
S | 493 | Q493P | cAa | cCa | 1 | 1 | D.2 | 0.000075 |
S | 493 | Q493X | Caa | Taa | 1 | 1 | D.2 | 0.000075 |
S | 493 | Q493R | cAa | cGa | 1 | 1 | P.1 | 0.000016 |
S | 493 | Q493K | Caa | Aaa | 1 | 1 | P.1.12 | 0.000484 |
S | 493 | Q493E | Caa | Gaa | 1 | 1 | P.1.15 | 0.000232 |
S | 493 | Q493R | cAa | cGa | 1 | 1 | P.1.16 | 0.000374 |
S | 493 | Q493R | cAa | cGa | 1 | 1 | Q.4 | 0.000455 |
S | 493 | Q493K | Caa | Aaa | 1 | 1 | Q.8 | 0.000165 |
S | 493 | Q493Q | caA | caG | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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