CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 493

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	493	Q493E		nonsyn	Caa	Gaa	674	674	1	23039-23041
S	493	Q493R		nonsyn	cAa	cGa	282	276	0.978723	23039-23041
S	493	Q493R		nonsyn	CAa	AGa	282	6	0.0212766	23039-23041
S	493	Q493L		nonsyn	cAa	cTa	205	204	0.995122	23039-23041
S	493	Q493L		nonsyn	cAA	cTG	205	1	0.00487805	23039-23041
S	493	Q493K		nonsyn	Caa	Aaa	176	176	1	23039-23041
S	493	Q493Q		syn	caA	caG	154	154	1	23039-23041
S	493	Q493H		nonsyn	caA	caC	94	72	0.765957	23039-23041
S	493	Q493H		nonsyn	caA	caT	94	22	0.234043	23039-23041
S	493	Q493X		nonsyn	Caa	Taa	36	34	0.944444	23039-23041
S	493	Q493X		nonsyn	CAa	TGa	36	2	0.0555556	23039-23041
S	493	Q493del		del	CAA	---	33	33	1	23039-23041
S	493	Q493P		nonsyn	cAa	cCa	30	30	1	23039-23041
S	493	Q493Y		nonsyn	CaA	TaC	5	5	1	23039-23041
S	493	Q493T		nonsyn	CAa	ACa	4	4	1	23039-23041
S	493	Q493del1		del	cAa	c-a	4	2	0.5	23039-23041
S	493	Q493del1		del	Caa	-aa	4	2	0.5	23039-23041
S	493	Q493I		nonsyn	CAa	ATa	3	3	1	23039-23041
S	493	Q493del2		del	CAa	--a	1	1	1	23039-23041
S	493	Q493A		nonsyn	CAA	GCT	1	1	1	23039-23041

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	493	Q493E	Caa	Gaa	674	674	All	0.000129
S	493	Q493E	Caa	Gaa	381	381	AY.4	0.000593
S	493	Q493R	cAa	cGa	276	282	All	0.000053
S	493	Q493R	CAa	AGa	6	282	All	0.000001
S	493	Q493L	cAa	cTa	204	205	All	0.000039
S	493	Q493L	cAA	cTG	1	205	All	0
S	493	Q493R	cAa	cGa	202	204	B.1.1.7	0.000181
S	493	Q493R	CAa	AGa	2	204	B.1.1.7	0.000002
S	493	Q493E	Caa	Gaa	203	203	AY.49	0.648562
S	493	Q493K	Caa	Aaa	176	176	All	0.000034
S	493	Q493Q	caA	caG	154	154	All	0.000029
S	493	Q493K	Caa	Aaa	107	107	B.1.1.7	0.000096
S	493	Q493H	caA	caC	72	94	All	0.000014
S	493	Q493H	caA	caT	22	94	All	0.000004
S	493	Q493Q	caA	caG	38	38	B.1.497	0.011961
S	493	Q493Q	caA	caG	37	37	B.1.1.7	0.000033
S	493	Q493X	Caa	Taa	34	36	All	0.000007
S	493	Q493X	CAa	TGa	2	36	All	0
S	493	Q493L	cAa	cTa	36	36	AY.54	0.003432
S	493	Q493del	CAA	---	33	33	All	0.000006
S	493	Q493P	cAa	cCa	30	30	All	0.000006
S	493	Q493H	caA	caC	29	29	B.1.1.7	0.000026
S	493	Q493L	cAa	cTa	23	23	B.1.1.7	0.000021
S	493	Q493L	cAa	cTa	21	21	AY.4	0.000033
S	493	Q493L	cAa	cTa	21	21	B.1	0.000192
S	493	Q493E	Caa	Gaa	19	19	B.1.617.2	0.000072
S	493	Q493P	cAa	cCa	18	18	AY.44	0.00011
S	493	Q493E	Caa	Gaa	17	17	AY.3	0.000169
S	493	Q493Q	caA	caG	13	13	B.1.177.61	0.565217
S	493	Q493H	caA	caC	6	12	AY.4	0.000009
S	493	Q493H	caA	caT	6	12	AY.4	0.000009
S	493	Q493Q	caA	caG	12	12	B.1.234	0.001583
S	493	Q493K	Caa	Aaa	11	11	B.1.1	0.0002
S	493	Q493K	Caa	Aaa	11	11	B.1.517	0.004697
S	493	Q493R	cAa	cGa	8	11	B.1.517	0.003416
S	493	Q493R	CAa	AGa	3	11	B.1.517	0.001281
S	493	Q493Q	caA	caG	11	11	B.1.617.2	0.000041
S	493	Q493L	cAa	cTa	10	10	B.1.617.2	0.000038
S	493	Q493R	cAa	cGa	9	9	B.1.2	0.000079
S	493	Q493Q	caA	caG	8	8	AY.100	0.000368
S	493	Q493del	CAA	---	7	7	AY.43	0.000031
S	493	Q493E	Caa	Gaa	7	7	AY.46.3	0.006536
S	493	Q493L	cAa	cTa	7	7	B.1.177	0.000092
S	493	Q493R	cAa	cGa	7	7	B.1.565	0.005673
S	493	Q493L	cAa	cTa	6	6	AY.43	0.000027
S	493	Q493L	cAa	cTa	6	6	B.1.2	0.000053
S	493	Q493K	Caa	Aaa	6	6	B.1.240	0.001293
S	493	Q493L	cAa	cTa	6	6	P.1	0.000095
S	493	Q493Y	CaA	TaC	5	5	All	0.000001
S	493	Q493L	cAa	cTa	5	5	AY.44	0.00003
S	493	Q493E	Caa	Gaa	5	5	AY.46.2	0.003177
S	493	Q493E	Caa	Gaa	5	5	AY.99.1	0.007764
S	493	Q493X	Caa	Taa	5	5	B.1.1.7	0.000004
S	493	Q493K	Caa	Aaa	5	5	B.1.2	0.000044
S	493	Q493H	caA	caC	4	5	B.1.427	0.000202
S	493	Q493H	caA	caT	1	5	B.1.427	0.00005
S	493	Q493H	caA	caC	5	5	B.1.617.2	0.000019
S	493	Q493L	cAa	cTa	5	5	B.1.637	0.000365
S	493	Q493T	CAa	ACa	4	4	All	0.000001
S	493	Q493del1	cAa	c-a	2	4	All	0
S	493	Q493del1	Caa	-aa	2	4	All	0
S	493	Q493L	cAa	cTa	4	4	AY.103	0.000025
S	493	Q493H	caA	caT	3	4	AY.103	0.000019
S	493	Q493H	caA	caC	1	4	AY.103	0.000006
S	493	Q493K	Caa	Aaa	4	4	AY.4	0.000006
S	493	Q493E	Caa	Gaa	4	4	AY.43	0.000018
S	493	Q493X	Caa	Taa	3	4	AY.43	0.000013
S	493	Q493X	CAa	TGa	1	4	AY.43	0.000004
S	493	Q493E	Caa	Gaa	4	4	AY.44	0.000024
S	493	Q493R	cAa	cGa	4	4	AY.44	0.000024
S	493	Q493R	cAa	cGa	4	4	B.1	0.000037
S	493	Q493X	Caa	Taa	3	4	B.1	0.000027
S	493	Q493X	CAa	TGa	1	4	B.1	0.000009
S	493	Q493L	cAa	cTa	4	4	B.1.108	0.023256
S	493	Q493I	CAa	ATa	3	3	All	0.000001
S	493	Q493R	cAa	cGa	3	3	AY.103	0.000019
S	493	Q493L	cAa	cTa	3	3	AY.120	0.000112
S	493	Q493E	Caa	Gaa	3	3	AY.13	0.000483
S	493	Q493H	caA	caC	3	3	AY.14	0.000264
S	493	Q493L	cAa	cTa	3	3	AY.3	0.00003
S	493	Q493R	cAa	cGa	3	3	AY.3	0.00003
S	493	Q493H	caA	caC	3	3	AY.3	0.00003
S	493	Q493L	cAa	cTa	3	3	AY.32	0.001597
S	493	Q493E	Caa	Gaa	3	3	AY.39	0.000074
S	493	Q493Q	caA	caG	3	3	AY.4	0.000005
S	493	Q493Q	caA	caG	3	3	AY.43	0.000013
S	493	Q493Q	caA	caG	3	3	AY.98	0.000237
S	493	Q493K	Caa	Aaa	3	3	B.1	0.000027
S	493	Q493L	cAa	cTa	3	3	B.1.1	0.000054
S	493	Q493Q	caA	caG	3	3	B.1.1	0.000054
S	493	Q493Q	caA	caG	3	3	B.1.177	0.00004
S	493	Q493R	cAa	cGa	3	3	B.1.369	0.000856
S	493	Q493K	Caa	Aaa	3	3	B.1.486	0.333333
S	493	Q493R	cAa	cGa	3	3	B.1.526	0.000071
S	493	Q493R	cAa	cGa	3	3	B.1.596	0.000261
S	493	Q493K	Caa	Aaa	3	3	B.1.623	0.001609
S	493	Q493I	CAa	ATa	2	2		0.111111
S	493	Q493Q	caA	caG	2	2		0.111111
S	493	Q493X	Caa	Taa	2	2		0.111111
S	493	Q493H	caA	caC	2	2		0.111111
S	493	Q493L	cAa	cTa	2	2		0.111111
S	493	Q493del	CAA	---	2	2		0.111111
S	493	Q493K	Caa	Aaa	2	2		0.111111
S	493	Q493Y	CaA	TaC	2	2		0.111111
S	493	Q493K	Caa	Aaa	2	2	AY.103	0.000012
S	493	Q493P	cAa	cCa	2	2	AY.119	0.000071
S	493	Q493H	caA	caT	2	2	AY.20	0.000078
S	493	Q493E	Caa	Gaa	2	2	AY.22	0.004184
S	493	Q493Q	caA	caG	2	2	AY.25	0.000012
S	493	Q493E	Caa	Gaa	2	2	AY.25	0.000012
S	493	Q493X	Caa	Taa	2	2	AY.4	0.000003
S	493	Q493P	cAa	cCa	2	2	AY.43	0.000009
S	493	Q493Y	CaA	TaC	2	2	AY.43	0.000009
S	493	Q493K	Caa	Aaa	2	2	AY.44	0.000012
S	493	Q493H	caA	caC	2	2	AY.46.5	0.000397
S	493	Q493E	Caa	Gaa	2	2	AY.54	0.000191
S	493	Q493H	caA	caC	2	2	AY.61	0.00021
S	493	Q493del	CAA	---	2	2	AY.75	0.000112
S	493	Q493Q	caA	caG	2	2	AY.75	0.000112
S	493	Q493R	CAa	AGa	1	2	B.1.1	0.000018
S	493	Q493R	cAa	cGa	1	2	B.1.1	0.000018
S	493	Q493L	cAa	cTa	2	2	B.1.1.265	0.006309
S	493	Q493E	Caa	Gaa	2	2	B.1.1.7	0.000002
S	493	Q493del	CAA	---	2	2	B.1.1.7	0.000002
S	493	Q493R	cAa	cGa	2	2	B.1.160	0.000062
S	493	Q493K	Caa	Aaa	2	2	B.1.160	0.000062
S	493	Q493H	caA	caC	2	2	B.1.177	0.000026
S	493	Q493L	cAa	cTa	2	2	B.1.177.36	0.032258
S	493	Q493L	cAa	cTa	2	2	B.1.177.43	0.002954
S	493	Q493L	cAa	cTa	2	2	B.1.206	0.001631
S	493	Q493R	cAa	cGa	2	2	B.1.240	0.000431
S	493	Q493L	cAa	cTa	2	2	B.1.243	0.000139
S	493	Q493L	cAa	cTa	2	2	B.1.36	0.000292
S	493	Q493E	Caa	Gaa	2	2	B.1.369	0.00057
S	493	Q493R	cAa	cGa	2	2	B.1.617.2	0.000008
S	493	Q493P	cAa	cCa	2	2	B.1.617.2	0.000008
S	493	Q493X	Caa	Taa	2	2	B.1.617.2	0.000008
S	493	Q493R	cAa	cGa	2	2	B.40	0.000729
S	493	Q493R	cAa	cGa	2	2	Q.7	0.002222
S	493	Q493L	cAa	cTa	1	1	A	0.000387
S	493	Q493del1	Caa	-aa	1	1	A.1	0.000282
S	493	Q493H	caA	caT	1	1	A.23.1	0.000704
S	493	Q493L	cAa	cTa	1	1	AD.2	0.000219
S	493	Q493del2	CAa	--a	1	1	All	0
S	493	Q493A	CAA	GCT	1	1	All	0
S	493	Q493T	CAa	ACa	1	1	AY.102	0.000027
S	493	Q493del	CAA	---	1	1	AY.102	0.000027
S	493	Q493del	CAA	---	1	1	AY.103	0.000006
S	493	Q493E	Caa	Gaa	1	1	AY.103	0.000006
S	493	Q493del	CAA	---	1	1	AY.107	0.000466
S	493	Q493del	CAA	---	1	1	AY.108	0.001103
S	493	Q493Q	caA	caG	1	1	AY.109	0.00074
S	493	Q493del	CAA	---	1	1	AY.113	0.000142
S	493	Q493H	caA	caC	1	1	AY.114	0.000231
S	493	Q493E	Caa	Gaa	1	1	AY.114	0.000231
S	493	Q493E	Caa	Gaa	1	1	AY.116	0.000287
S	493	Q493L	cAa	cTa	1	1	AY.117	0.000085
S	493	Q493H	caA	caC	1	1	AY.120	0.000037
S	493	Q493K	Caa	Aaa	1	1	AY.16	0.00038
S	493	Q493X	Caa	Taa	1	1	AY.20	0.000039
S	493	Q493R	cAa	cGa	1	1	AY.20	0.000039
S	493	Q493L	cAa	cTa	1	1	AY.23.1	0.000417
S	493	Q493H	caA	caC	1	1	AY.24	0.000431
S	493	Q493L	cAa	cTa	1	1	AY.25	0.000006
S	493	Q493del	CAA	---	1	1	AY.25	0.000006
S	493	Q493R	cAa	cGa	1	1	AY.25	0.000006
S	493	Q493Q	caA	caG	1	1	AY.26	0.000028
S	493	Q493P	cAa	cCa	1	1	AY.26	0.000028
S	493	Q493L	cAa	cTa	1	1	AY.3.1	0.000085
S	493	Q493P	cAa	cCa	1	1	AY.3.1	0.000085
S	493	Q493X	Caa	Taa	1	1	AY.34	0.000097
S	493	Q493L	cAa	cTa	1	1	AY.38	0.000499
S	493	Q493L	cAa	cTa	1	1	AY.39	0.000025
S	493	Q493H	caA	caC	1	1	AY.39.1	0.00004
S	493	Q493R	cAa	cGa	1	1	AY.4	0.000002
S	493	Q493del	CAA	---	1	1	AY.4	0.000002
S	493	Q493H	caA	caC	1	1	AY.4.2	0.000022
S	493	Q493L	cAa	cTa	1	1	AY.4.5	0.000107
S	493	Q493L	cAa	cTa	1	1	AY.42	0.00004
S	493	Q493Q	caA	caG	1	1	AY.42	0.00004
S	493	Q493K	Caa	Aaa	1	1	AY.43	0.000004
S	493	Q493R	cAa	cGa	1	1	AY.43	0.000004
S	493	Q493del2	CAa	--a	1	1	AY.43	0.000004
S	493	Q493H	caA	caT	1	1	AY.43	0.000004
S	493	Q493X	Caa	Taa	1	1	AY.44	0.000006
S	493	Q493Q	caA	caG	1	1	AY.44	0.000006
S	493	Q493H	caA	caC	1	1	AY.44	0.000006
S	493	Q493E	Caa	Gaa	1	1	AY.45	0.000122
S	493	Q493del	CAA	---	1	1	AY.46.6	0.000072
S	493	Q493L	cAA	cTG	1	1	AY.5	0.000021
S	493	Q493X	Caa	Taa	1	1	AY.5	0.000021
S	493	Q493E	Caa	Gaa	1	1	AY.5	0.000021
S	493	Q493E	Caa	Gaa	1	1	AY.5.3	0.000337
S	493	Q493E	Caa	Gaa	1	1	AY.58	0.000907
S	493	Q493L	cAa	cTa	1	1	AY.6	0.000041
S	493	Q493E	Caa	Gaa	1	1	AY.6	0.000041
S	493	Q493Q	caA	caG	1	1	AY.61	0.000105
S	493	Q493L	cAa	cTa	1	1	AY.62	0.000436
S	493	Q493E	Caa	Gaa	1	1	AY.65	0.000533
S	493	Q493del	CAA	---	1	1	AY.67	0.000464
S	493	Q493H	caA	caT	1	1	AY.73	0.000665
S	493	Q493E	Caa	Gaa	1	1	AY.75	0.000056
S	493	Q493L	cAa	cTa	1	1	AY.78	0.001541
S	493	Q493E	Caa	Gaa	1	1	AY.9.1	0.000084
S	493	Q493del	CAA	---	1	1	AY.9.2	0.000037
S	493	Q493Q	caA	caG	1	1	AY.9.2	0.000037
S	493	Q493R	cAa	cGa	1	1	AY.92	0.000287
S	493	Q493H	caA	caC	1	1	AY.99.2	0.000092
S	493	Q493L	cAa	cTa	1	1	B	0.000128
S	493	Q493del1	Caa	-aa	1	1	B.1	0.000009
S	493	Q493del	CAA	---	1	1	B.1	0.000009
S	493	Q493H	caA	caT	1	1	B.1	0.000009
S	493	Q493Q	caA	caG	1	1	B.1	0.000009
S	493	Q493X	Caa	Taa	1	1	B.1.1	0.000018
S	493	Q493E	Caa	Gaa	1	1	B.1.1	0.000018
S	493	Q493del	CAA	---	1	1	B.1.1	0.000018
S	493	Q493P	cAa	cCa	1	1	B.1.1	0.000018
S	493	Q493T	CAa	ACa	1	1	B.1.1	0.000018
S	493	Q493I	CAa	ATa	1	1	B.1.1	0.000018
S	493	Q493H	caA	caC	1	1	B.1.1	0.000018
S	493	Q493del	CAA	---	1	1	B.1.1.139	0.022727
S	493	Q493K	Caa	Aaa	1	1	B.1.1.214	0.000055
S	493	Q493R	cAa	cGa	1	1	B.1.1.222	0.000204
S	493	Q493X	Caa	Taa	1	1	B.1.1.26	0.005236
S	493	Q493L	cAa	cTa	1	1	B.1.1.261	0.008621
S	493	Q493Q	caA	caG	1	1	B.1.1.28	0.000311
S	493	Q493Y	CaA	TaC	1	1	B.1.1.306	0.000438
S	493	Q493Q	caA	caG	1	1	B.1.1.317	0.000412
S	493	Q493K	Caa	Aaa	1	1	B.1.1.37	0.000193
S	493	Q493del	CAA	---	1	1	B.1.1.39	0.00051
S	493	Q493H	caA	caC	1	1	B.1.1.464	0.001473
S	493	Q493L	cAa	cTa	1	1	B.1.1.519	0.00004
S	493	Q493X	Caa	Taa	1	1	B.1.1.519	0.00004
S	493	Q493X	Caa	Taa	1	1	B.1.1.61	0.008772
S	493	Q493P	cAa	cCa	1	1	B.1.1.7	0.000001
S	493	Q493X	Caa	Taa	1	1	B.1.113	0.015625
S	493	Q493R	cAa	cGa	1	1	B.1.139	0.000733
S	493	Q493T	CAa	ACa	1	1	B.1.160	0.000031
S	493	Q493K	Caa	Aaa	1	1	B.1.177	0.000013
S	493	Q493L	cAa	cTa	1	1	B.1.177.12	0.000152
S	493	Q493L	cAa	cTa	1	1	B.1.177.18	0.00116
S	493	Q493H	caA	caT	1	1	B.1.177.32	0.00135
S	493	Q493del	CAA	---	1	1	B.1.177.4	0.000211
S	493	Q493K	Caa	Aaa	1	1	B.1.177.44	0.000519
S	493	Q493L	cAa	cTa	1	1	B.1.177.46	0.000918
S	493	Q493X	Caa	Taa	1	1	B.1.177.60	0.000218
S	493	Q493K	Caa	Aaa	1	1	B.1.177.7	0.000165
S	493	Q493L	cAa	cTa	1	1	B.1.177.70	0.005917
S	493	Q493del1	cAa	c-a	1	1	B.1.2	0.000009
S	493	Q493X	Caa	Taa	1	1	B.1.2	0.000009
S	493	Q493del	CAA	---	1	1	B.1.2	0.000009
S	493	Q493H	caA	caT	1	1	B.1.234	0.000132
S	493	Q493R	cAa	cGa	1	1	B.1.243	0.00007
S	493	Q493H	caA	caT	1	1	B.1.258	0.000067
S	493	Q493Q	caA	caG	1	1	B.1.258	0.000067
S	493	Q493R	cAa	cGa	1	1	B.1.258	0.000067
S	493	Q493K	Caa	Aaa	1	1	B.1.258.17	0.000104
S	493	Q493X	Caa	Taa	1	1	B.1.324	0.001605
S	493	Q493del	CAA	---	1	1	B.1.351	0.00003
S	493	Q493H	caA	caC	1	1	B.1.351	0.00003
S	493	Q493K	Caa	Aaa	1	1	B.1.351	0.00003
S	493	Q493Q	caA	caG	1	1	B.1.351.3	0.000876
S	493	Q493H	caA	caC	1	1	B.1.36.22	0.001208
S	493	Q493K	Caa	Aaa	1	1	B.1.362	0.001541
S	493	Q493X	Caa	Taa	1	1	B.1.367	0.000792
S	493	Q493K	Caa	Aaa	1	1	B.1.399	0.001934
S	493	Q493H	caA	caC	1	1	B.1.426	0.001009
S	493	Q493L	cAa	cTa	1	1	B.1.428	0.00102
S	493	Q493K	Caa	Aaa	1	1	B.1.429	0.000024
S	493	Q493H	caA	caT	1	1	B.1.429	0.000024
S	493	Q493X	Caa	Taa	1	1	B.1.438.1	0.000107
S	493	Q493L	cAa	cTa	1	1	B.1.470	0.001404
S	493	Q493K	Caa	Aaa	1	1	B.1.521	0.004975
S	493	Q493L	cAa	cTa	1	1	B.1.526	0.000024
S	493	Q493del	CAA	---	1	1	B.1.526	0.000024
S	493	Q493Q	caA	caG	1	1	B.1.526	0.000024
S	493	Q493R	cAa	cGa	1	1	B.1.561	0.000397
S	493	Q493X	Caa	Taa	1	1	B.1.564	0.000426
S	493	Q493H	caA	caT	1	1	B.1.568	0.001111
S	493	Q493R	cAa	cGa	1	1	B.1.575	0.000303
S	493	Q493R	cAa	cGa	1	1	B.1.577	0.000687
S	493	Q493X	Caa	Taa	1	1	B.1.582	0.000491
S	493	Q493Q	caA	caG	1	1	B.1.582	0.000491
S	493	Q493R	cAa	cGa	1	1	B.1.602	0.006536
S	493	Q493del1	cAa	c-a	1	1	B.1.617.2	0.000004
S	493	Q493A	CAA	GCT	1	1	B.1.617.2	0.000004
S	493	Q493T	CAa	ACa	1	1	B.1.617.2	0.000004
S	493	Q493del	CAA	---	1	1	B.1.620	0.000946
S	493	Q493L	cAa	cTa	1	1	B.1.628	0.000352
S	493	Q493P	cAa	cCa	1	1	B.1.637	0.000073
S	493	Q493H	caA	caC	1	1	B.1.637	0.000073
S	493	Q493del	CAA	---	1	1	B.34	0.013699
S	493	Q493H	caA	caT	1	1	D.2	0.000075
S	493	Q493P	cAa	cCa	1	1	D.2	0.000075
S	493	Q493X	Caa	Taa	1	1	D.2	0.000075
S	493	Q493R	cAa	cGa	1	1	P.1	0.000016
S	493	Q493K	Caa	Aaa	1	1	P.1.12	0.000484
S	493	Q493E	Caa	Gaa	1	1	P.1.15	0.000232
S	493	Q493R	cAa	cGa	1	1	P.1.16	0.000374
S	493	Q493R	cAa	cGa	1	1	Q.4	0.000455
S	493	Q493K	Caa	Aaa	1	1	Q.8	0.000165
S	493	Q493Q	caA	caG	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.