CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 49 | H49Y | nonsyn | Cat | Tat | 10096 | 10096 | 1 | 21707-21709 | |
S | 49 | H49H | syn | caT | caC | 230 | 230 | 1 | 21707-21709 | |
S | 49 | H49del | del | CAT | --- | 164 | 164 | 1 | 21707-21709 | |
S | 49 | H49I | nonsyn | CAt | ATt | 75 | 75 | 1 | 21707-21709 | |
S | 49 | H49L | nonsyn | cAt | cTt | 67 | 67 | 1 | 21707-21709 | |
S | 49 | H49N | nonsyn | Cat | Aat | 23 | 23 | 1 | 21707-21709 | |
S | 49 | H49R | nonsyn | cAt | cGt | 12 | 12 | 1 | 21707-21709 | |
S | 49 | H49Q | nonsyn | caT | caG | 10 | 9 | 0.9 | 21707-21709 | |
S | 49 | H49Q | nonsyn | caT | caA | 10 | 1 | 0.1 | 21707-21709 | |
S | 49 | H49D | nonsyn | Cat | Gat | 6 | 6 | 1 | 21707-21709 | |
S | 49 | H49del1 | del | Cat | -at | 4 | 3 | 0.75 | 21707-21709 | |
S | 49 | H49del1 | del | caT | ca- | 4 | 1 | 0.25 | 21707-21709 | |
S | 49 | H49G | nonsyn | CAt | GGt | 3 | 2 | 0.666667 | 21707-21709 | |
S | 49 | H49del2 | del | cAT | c-- | 3 | 1 | 0.333333 | 21707-21709 | |
S | 49 | H49G | nonsyn | CAT | GGG | 3 | 1 | 0.333333 | 21707-21709 | |
S | 49 | H49del2 | del | CAT | --N | 3 | 1 | 0.333333 | 21707-21709 | |
S | 49 | H49del2 | del | CAt | --t | 3 | 1 | 0.333333 | 21707-21709 | |
S | 49 | H49C | nonsyn | CAt | TGt | 2 | 2 | 1 | 21707-21709 | |
S | 49 | H49P | nonsyn | cAt | cCt | 1 | 1 | 1 | 21707-21709 | |
S | 49 | H49F | nonsyn | CAt | TTt | 1 | 1 | 1 | 21707-21709 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 49 | H49Y | Cat | Tat | 10096 | 10096 | All | 0.001931 |
S | 49 | H49Y | Cat | Tat | 2235 | 2235 | B.1.1.7 | 0.002001 |
S | 49 | H49Y | Cat | Tat | 1135 | 1135 | P.1.17.1 | 0.993001 |
S | 49 | H49Y | Cat | Tat | 999 | 999 | B.1.564 | 0.425468 |
S | 49 | H49Y | Cat | Tat | 438 | 438 | B.1.1 | 0.007946 |
S | 49 | H49Y | Cat | Tat | 400 | 400 | B.1 | 0.003664 |
S | 49 | H49Y | Cat | Tat | 310 | 310 | AY.4 | 0.000482 |
S | 49 | H49H | caT | caC | 230 | 230 | All | 0.000044 |
S | 49 | H49Y | Cat | Tat | 229 | 229 | B.1.617.2 | 0.000862 |
S | 49 | H49Y | Cat | Tat | 221 | 221 | B.1.400 | 0.094809 |
S | 49 | H49Y | Cat | Tat | 210 | 210 | B.1.2 | 0.001849 |
S | 49 | H49Y | Cat | Tat | 201 | 201 | AY.25 | 0.001209 |
S | 49 | H49Y | Cat | Tat | 197 | 197 | AY.33 | 0.013155 |
S | 49 | H49Y | Cat | Tat | 193 | 193 | B.1.1.214 | 0.010703 |
S | 49 | H49del | CAT | --- | 164 | 164 | All | 0.000031 |
S | 49 | H49Y | Cat | Tat | 143 | 143 | B.1.177 | 0.001883 |
S | 49 | H49Y | Cat | Tat | 129 | 129 | B.1.526 | 0.003032 |
S | 49 | H49Y | Cat | Tat | 116 | 116 | B.1.1.222 | 0.023664 |
S | 49 | H49Y | Cat | Tat | 89 | 89 | AY.103 | 0.000553 |
S | 49 | H49H | caT | caC | 87 | 87 | AY.4 | 0.000135 |
S | 49 | H49Y | Cat | Tat | 86 | 86 | B.1.429 | 0.002023 |
S | 49 | H49Y | Cat | Tat | 85 | 85 | AY.46.6 | 0.006138 |
S | 49 | H49Y | Cat | Tat | 82 | 82 | B.1.618 | 0.330645 |
S | 49 | H49Y | Cat | Tat | 79 | 79 | N.5 | 0.139576 |
S | 49 | H49Y | Cat | Tat | 78 | 78 | B.1.221.3 | 0.065 |
S | 49 | H49I | CAt | ATt | 75 | 75 | All | 0.000014 |
S | 49 | H49Y | Cat | Tat | 71 | 71 | P.1 | 0.001119 |
S | 49 | H49I | CAt | ATt | 69 | 69 | AY.4 | 0.000107 |
S | 49 | H49Y | Cat | Tat | 69 | 69 | AY.43 | 0.000306 |
S | 49 | H49L | cAt | cTt | 67 | 67 | All | 0.000013 |
S | 49 | H49Y | Cat | Tat | 62 | 62 | AY.113 | 0.008828 |
S | 49 | H49Y | Cat | Tat | 57 | 57 | B.1.635 | 1 |
S | 49 | H49Y | Cat | Tat | 56 | 56 | AY.114 | 0.012942 |
S | 49 | H49Y | Cat | Tat | 56 | 56 | AY.23 | 0.003906 |
S | 49 | H49Y | Cat | Tat | 54 | 54 | AY.3 | 0.000537 |
S | 49 | H49Y | Cat | Tat | 52 | 52 | AY.102 | 0.001379 |
S | 49 | H49Y | Cat | Tat | 51 | 51 | B.1.36 | 0.007441 |
S | 49 | H49Y | Cat | Tat | 50 | 50 | AY.120 | 0.001859 |
S | 49 | H49Y | Cat | Tat | 50 | 50 | AY.44 | 0.000304 |
S | 49 | H49Y | Cat | Tat | 49 | 49 | B.1.604 | 0.844828 |
S | 49 | H49Y | Cat | Tat | 48 | 48 | B | 0.006135 |
S | 49 | H49del | CAT | --- | 46 | 46 | B.1.1.7 | 0.000041 |
S | 49 | H49Y | Cat | Tat | 45 | 45 | B.1.1.420 | 0.045272 |
S | 49 | H49Y | Cat | Tat | 40 | 40 | AY.100 | 0.00184 |
S | 49 | H49Y | Cat | Tat | 38 | 38 | A.27 | 0.062914 |
S | 49 | H49Y | Cat | Tat | 38 | 38 | B.1.1.277 | 0.028832 |
S | 49 | H49Y | Cat | Tat | 36 | 36 | B.1.258 | 0.002396 |
S | 49 | H49Y | Cat | Tat | 36 | 36 | B.1.349 | 0.025733 |
S | 49 | H49Y | Cat | Tat | 35 | 35 | B.1.160 | 0.001092 |
S | 49 | H49Y | Cat | Tat | 35 | 35 | B.1.221 | 0.002486 |
S | 49 | H49Y | Cat | Tat | 34 | 34 | AY.39 | 0.00084 |
S | 49 | H49Y | Cat | Tat | 33 | 33 | B.1.351 | 0.000981 |
S | 49 | H49Y | Cat | Tat | 29 | 29 | C.36 | 0.026412 |
S | 49 | H49H | caT | caC | 28 | 28 | AY.103 | 0.000174 |
S | 49 | H49Y | Cat | Tat | 28 | 28 | AY.13 | 0.004507 |
S | 49 | H49Y | Cat | Tat | 27 | 27 | B.1.596 | 0.002353 |
S | 49 | H49Y | Cat | Tat | 26 | 26 | B.1.243 | 0.001809 |
S | 49 | H49Y | Cat | Tat | 25 | 25 | AY.42 | 0.001006 |
S | 49 | H49Y | Cat | Tat | 24 | 24 | AY.7 | 0.004704 |
S | 49 | H49H | caT | caC | 24 | 24 | B.1.1.7 | 0.000021 |
S | 49 | H49N | Cat | Aat | 23 | 23 | All | 0.000004 |
S | 49 | H49Y | Cat | Tat | 23 | 23 | B.1.399 | 0.044487 |
S | 49 | H49Y | Cat | Tat | 22 | 22 | B.1.1.28 | 0.006847 |
S | 49 | H49Y | Cat | Tat | 21 | 21 | B.1.179 | 0.078947 |
S | 49 | H49Y | Cat | Tat | 20 | 20 | AY.5 | 0.000413 |
S | 49 | H49Y | Cat | Tat | 20 | 20 | B.1.1.284 | 0.002148 |
S | 49 | H49Y | Cat | Tat | 18 | 18 | AZ.3 | 0.027356 |
S | 49 | H49Y | Cat | Tat | 18 | 18 | B.1.1.419 | 0.133333 |
S | 49 | H49Y | Cat | Tat | 18 | 18 | B.1.1.519 | 0.000715 |
S | 49 | H49Y | Cat | Tat | 18 | 18 | B.1.427 | 0.000909 |
S | 49 | H49H | caT | caC | 18 | 18 | P.1.14 | 0.00086 |
S | 49 | H49Y | Cat | Tat | 18 | 18 | R.1 | 0.00162 |
S | 49 | H49Y | Cat | Tat | 17 | 17 | AY.119 | 0.0006 |
S | 49 | H49L | cAt | cTt | 17 | 17 | AY.4 | 0.000026 |
S | 49 | H49Y | Cat | Tat | 17 | 17 | AY.47 | 0.000529 |
S | 49 | H49Y | Cat | Tat | 16 | 16 | AY.1 | 0.006332 |
S | 49 | H49Y | Cat | Tat | 16 | 16 | B.1.1.174 | 0.054054 |
S | 49 | H49Y | Cat | Tat | 16 | 16 | B.1.377 | 0.073059 |
S | 49 | H49Y | Cat | Tat | 16 | 16 | C.37 | 0.001857 |
S | 49 | H49Y | Cat | Tat | 15 | 15 | B.1.177.15 | 0.009464 |
S | 49 | H49del | CAT | --- | 14 | 14 | AY.4 | 0.000022 |
S | 49 | H49Y | Cat | Tat | 14 | 14 | AY.51 | 0.012727 |
S | 49 | H49Y | Cat | Tat | 14 | 14 | B.1.110 | 0.063348 |
S | 49 | H49del | CAT | --- | 13 | 13 | AY.43 | 0.000058 |
S | 49 | H49Y | Cat | Tat | 13 | 13 | B.1.1.25 | 0.007391 |
S | 49 | H49Y | Cat | Tat | 13 | 13 | B.1.565 | 0.010535 |
S | 49 | H49R | cAt | cGt | 12 | 12 | All | 0.000002 |
S | 49 | H49Y | Cat | Tat | 12 | 12 | AY.39.1 | 0.000475 |
S | 49 | H49Y | Cat | Tat | 12 | 12 | B.1.1.56 | 0.214286 |
S | 49 | H49Y | Cat | Tat | 12 | 12 | B.1.1.70 | 0.004093 |
S | 49 | H49Y | Cat | Tat | 12 | 12 | B.1.621 | 0.001062 |
S | 49 | H49Y | Cat | Tat | 11 | 11 | AY.27 | 0.000712 |
S | 49 | H49N | Cat | Aat | 11 | 11 | AY.4 | 0.000017 |
S | 49 | H49Y | Cat | Tat | 11 | 11 | B.1.1.204 | 0.033435 |
S | 49 | H49Y | Cat | Tat | 11 | 11 | C.13 | 0.282051 |
S | 49 | H49Q | caT | caG | 9 | 10 | All | 0.000002 |
S | 49 | H49Q | caT | caA | 1 | 10 | All | 0 |
S | 49 | H49del | CAT | --- | 10 | 10 | AY.25 | 0.00006 |
S | 49 | H49Y | Cat | Tat | 10 | 10 | AY.29 | 0.000158 |
S | 49 | H49Y | Cat | Tat | 10 | 10 | B.1.1.434 | 0.003486 |
S | 49 | H49del | CAT | --- | 10 | 10 | B.1.177 | 0.000132 |
S | 49 | H49Y | Cat | Tat | 10 | 10 | B.1.177.86 | 0.001835 |
S | 49 | H49Y | Cat | Tat | 10 | 10 | B.1.234 | 0.001319 |
S | 49 | H49Y | Cat | Tat | 10 | 10 | B.1.369 | 0.002852 |
S | 49 | H49H | caT | caC | 10 | 10 | B.1.429 | 0.000235 |
S | 49 | H49Y | Cat | Tat | 10 | 10 | B.1.617.1 | 0.00129 |
S | 49 | H49Y | Cat | Tat | 9 | 9 | AY.20 | 0.00035 |
S | 49 | H49Y | Cat | Tat | 9 | 9 | AY.26 | 0.000255 |
S | 49 | H49Y | Cat | Tat | 9 | 9 | AY.98 | 0.000711 |
S | 49 | H49Y | Cat | Tat | 9 | 9 | B.1.177.72 | 0.030508 |
S | 49 | H49Y | Cat | Tat | 9 | 9 | B.1.177.81 | 0.001704 |
S | 49 | H49Y | Cat | Tat | 9 | 9 | B.1.499 | 0.009454 |
S | 49 | H49Y | Cat | Tat | 9 | 9 | C.35 | 0.006966 |
S | 49 | H49Y | Cat | Tat | 9 | 9 | P.1.14 | 0.00043 |
S | 49 | H49Y | Cat | Tat | 8 | 8 | AE.8 | 0.003912 |
S | 49 | H49Y | Cat | Tat | 8 | 8 | AY.118 | 0.000501 |
S | 49 | H49Y | Cat | Tat | 8 | 8 | AY.45 | 0.000973 |
S | 49 | H49Y | Cat | Tat | 8 | 8 | AY.61 | 0.000838 |
S | 49 | H49Y | Cat | Tat | 8 | 8 | B.1.1.317 | 0.003294 |
S | 49 | H49Y | Cat | Tat | 8 | 8 | B.1.1.33 | 0.003367 |
S | 49 | H49Y | Cat | Tat | 8 | 8 | B.1.351.2 | 0.002421 |
S | 49 | H49Y | Cat | Tat | 8 | 8 | P.1.16 | 0.002993 |
S | 49 | H49Y | Cat | Tat | 7 | 7 | AY.120.1 | 0.002247 |
S | 49 | H49L | cAt | cTt | 7 | 7 | AY.3.1 | 0.000597 |
S | 49 | H49H | caT | caC | 7 | 7 | AY.39 | 0.000173 |
S | 49 | H49del | CAT | --- | 7 | 7 | AY.4.5 | 0.000752 |
S | 49 | H49Y | Cat | Tat | 7 | 7 | AY.46 | 0.000729 |
S | 49 | H49Y | Cat | Tat | 7 | 7 | AY.6 | 0.000288 |
S | 49 | H49Y | Cat | Tat | 7 | 7 | B.1.1.306 | 0.003069 |
S | 49 | H49Y | Cat | Tat | 7 | 7 | B.1.111 | 0.008226 |
S | 49 | H49H | caT | caC | 7 | 7 | B.1.617.2 | 0.000026 |
S | 49 | H49Y | Cat | Tat | 7 | 7 | B.1.632 | 0.04698 |
S | 49 | H49Y | Cat | Tat | 7 | 7 | P.1.15 | 0.001626 |
S | 49 | H49Y | Cat | Tat | 7 | 7 | P.2 | 0.001306 |
S | 49 | H49Y | Cat | Tat | 6 | 6 | A.1 | 0.001691 |
S | 49 | H49D | Cat | Gat | 6 | 6 | All | 0.000001 |
S | 49 | H49del | CAT | --- | 6 | 6 | AY.33 | 0.000401 |
S | 49 | H49Y | Cat | Tat | 6 | 6 | B.1.1.72 | 0.181818 |
S | 49 | H49Y | Cat | Tat | 6 | 6 | B.1.147 | 0.004535 |
S | 49 | H49Y | Cat | Tat | 6 | 6 | B.1.201 | 0.034091 |
S | 49 | H49Y | Cat | Tat | 6 | 6 | B.1.375 | 0.004918 |
S | 49 | H49Y | Cat | Tat | 6 | 6 | B.1.509 | 0.005195 |
S | 49 | H49Y | Cat | Tat | 6 | 6 | B.1.525 | 0.000679 |
S | 49 | H49Y | Cat | Tat | 6 | 6 | Q.4 | 0.002729 |
S | 49 | H49Y | Cat | Tat | 6 | 6 | Q.8 | 0.000989 |
S | 49 | H49Y | Cat | Tat | 5 | 5 | A | 0.001935 |
S | 49 | H49Y | Cat | Tat | 5 | 5 | AY.3.1 | 0.000426 |
S | 49 | H49Y | Cat | Tat | 5 | 5 | AY.4.2 | 0.000108 |
S | 49 | H49Y | Cat | Tat | 5 | 5 | AY.4.4 | 0.002046 |
S | 49 | H49Y | Cat | Tat | 5 | 5 | AY.54 | 0.000477 |
S | 49 | H49Y | Cat | Tat | 5 | 5 | AY.63 | 0.001934 |
S | 49 | H49Y | Cat | Tat | 5 | 5 | AY.75.1 | 0.000902 |
S | 49 | H49del | CAT | --- | 5 | 5 | B.1.1 | 0.000091 |
S | 49 | H49Y | Cat | Tat | 5 | 5 | B.1.1.1 | 0.001633 |
S | 49 | H49Y | Cat | Tat | 5 | 5 | B.1.1.170 | 0.006234 |
S | 49 | H49Y | Cat | Tat | 5 | 5 | B.1.1.216 | 0.004452 |
S | 49 | H49Y | Cat | Tat | 5 | 5 | B.1.1.37 | 0.000964 |
S | 49 | H49Q | caT | caG | 5 | 5 | B.1.1.7 | 0.000004 |
S | 49 | H49Y | Cat | Tat | 5 | 5 | B.1.177.12 | 0.000758 |
S | 49 | H49Y | Cat | Tat | 5 | 5 | B.1.241 | 0.004058 |
S | 49 | H49Y | Cat | Tat | 5 | 5 | B.1.396 | 0.003529 |
S | 49 | H49Y | Cat | Tat | 5 | 5 | B.1.426 | 0.005045 |
S | 49 | H49Y | Cat | Tat | 5 | 5 | B.1.441 | 0.048077 |
S | 49 | H49L | cAt | cTt | 5 | 5 | B.1.617.2 | 0.000019 |
S | 49 | H49H | caT | caC | 5 | 5 | B.40 | 0.001821 |
S | 49 | H49del1 | Cat | -at | 3 | 4 | All | 0.000001 |
S | 49 | H49del1 | caT | ca- | 1 | 4 | All | 0 |
S | 49 | H49Y | Cat | Tat | 4 | 4 | AY.101 | 0.001962 |
S | 49 | H49H | caT | caC | 4 | 4 | AY.102 | 0.000106 |
S | 49 | H49del | CAT | --- | 4 | 4 | AY.102 | 0.000106 |
S | 49 | H49Y | Cat | Tat | 4 | 4 | AY.14 | 0.000352 |
S | 49 | H49L | cAt | cTt | 4 | 4 | AY.3 | 0.00004 |
S | 49 | H49Y | Cat | Tat | 4 | 4 | AY.34 | 0.000388 |
S | 49 | H49L | cAt | cTt | 4 | 4 | AY.44 | 0.000024 |
S | 49 | H49Y | Cat | Tat | 4 | 4 | AY.75 | 0.000224 |
S | 49 | H49Y | Cat | Tat | 4 | 4 | B.1.1.348 | 0.003185 |
S | 49 | H49Y | Cat | Tat | 4 | 4 | B.1.1.385 | 0.017857 |
S | 49 | H49Y | Cat | Tat | 4 | 4 | B.1.1.523 | 0.00625 |
S | 49 | H49Y | Cat | Tat | 4 | 4 | B.1.1.63 | 0.001543 |
S | 49 | H49R | cAt | cGt | 4 | 4 | B.1.1.7 | 0.000004 |
S | 49 | H49Y | Cat | Tat | 4 | 4 | B.1.108 | 0.023256 |
S | 49 | H49Y | Cat | Tat | 4 | 4 | B.1.177.73 | 0.002265 |
S | 49 | H49Y | Cat | Tat | 4 | 4 | B.1.240 | 0.000862 |
S | 49 | H49Y | Cat | Tat | 4 | 4 | B.1.36.29 | 0.002069 |
S | 49 | H49Y | Cat | Tat | 4 | 4 | B.1.438.1 | 0.000429 |
S | 49 | H49Y | Cat | Tat | 4 | 4 | B.1.466.2 | 0.001565 |
S | 49 | H49Y | Cat | Tat | 4 | 4 | B.1.575 | 0.001214 |
S | 49 | H49N | Cat | Aat | 4 | 4 | B.1.617.2 | 0.000015 |
S | 49 | H49I | CAt | ATt | 4 | 4 | B.1.617.2 | 0.000015 |
S | 49 | H49Y | Cat | Tat | 4 | 4 | B.1.637 | 0.000292 |
S | 49 | H49Y | Cat | Tat | 4 | 4 | C.38 | 0.032258 |
S | 49 | H49Y | Cat | Tat | 4 | 4 | Q.1 | 0.000505 |
S | 49 | H49G | CAt | GGt | 2 | 3 | All | 0 |
S | 49 | H49del2 | CAt | --t | 1 | 3 | All | 0 |
S | 49 | H49G | CAT | GGG | 1 | 3 | All | 0 |
S | 49 | H49del2 | cAT | c-- | 1 | 3 | All | 0 |
S | 49 | H49del2 | CAT | --N | 1 | 3 | All | 0 |
S | 49 | H49H | caT | caC | 3 | 3 | AY.119 | 0.000106 |
S | 49 | H49H | caT | caC | 3 | 3 | AY.25 | 0.000018 |
S | 49 | H49Y | Cat | Tat | 3 | 3 | AY.35 | 0.000699 |
S | 49 | H49Y | Cat | Tat | 3 | 3 | AY.36 | 0.000445 |
S | 49 | H49Y | Cat | Tat | 3 | 3 | AY.38 | 0.001498 |
S | 49 | H49L | cAt | cTt | 3 | 3 | AY.43 | 0.000013 |
S | 49 | H49del | CAT | --- | 3 | 3 | AY.5 | 0.000062 |
S | 49 | H49del | CAT | --- | 3 | 3 | B.1 | 0.000027 |
S | 49 | H49H | caT | caC | 3 | 3 | B.1.1 | 0.000054 |
S | 49 | H49Y | Cat | Tat | 3 | 3 | B.1.1.243 | 0.012245 |
S | 49 | H49Y | Cat | Tat | 3 | 3 | B.1.1.318 | 0.000905 |
S | 49 | H49Y | Cat | Tat | 3 | 3 | B.1.1.347 | 0.054545 |
S | 49 | H49Y | Cat | Tat | 3 | 3 | B.1.1.368 | 0.009259 |
S | 49 | H49Y | Cat | Tat | 3 | 3 | B.1.1.526 | 0.010638 |
S | 49 | H49Y | Cat | Tat | 3 | 3 | B.1.177.21 | 0.000229 |
S | 49 | H49H | caT | caC | 3 | 3 | B.1.177.62 | 0.003576 |
S | 49 | H49Y | Cat | Tat | 3 | 3 | B.1.177.69 | 0.004451 |
S | 49 | H49Y | Cat | Tat | 3 | 3 | B.1.214.2 | 0.001799 |
S | 49 | H49Y | Cat | Tat | 3 | 3 | B.1.305 | 0.006452 |
S | 49 | H49Y | Cat | Tat | 3 | 3 | B.1.311 | 0.000824 |
S | 49 | H49Y | Cat | Tat | 3 | 3 | B.1.324 | 0.004815 |
S | 49 | H49Y | Cat | Tat | 3 | 3 | B.1.36.17 | 0.001482 |
S | 49 | H49Y | Cat | Tat | 3 | 3 | B.1.362 | 0.004622 |
S | 49 | H49Y | Cat | Tat | 3 | 3 | B.1.390 | 0.031915 |
S | 49 | H49Y | Cat | Tat | 3 | 3 | B.1.391 | 0.003382 |
S | 49 | H49Y | Cat | Tat | 3 | 3 | B.1.582 | 0.001472 |
S | 49 | H49Y | Cat | Tat | 3 | 3 | D.2 | 0.000225 |
S | 49 | H49Y | Cat | Tat | 3 | 3 | P.1.1 | 0.000953 |
S | 49 | H49R | cAt | cGt | 2 | 2 | 0.111111 | |
S | 49 | H49Y | Cat | Tat | 2 | 2 | 0.111111 | |
S | 49 | H49G | CAt | GGt | 2 | 2 | 0.111111 | |
S | 49 | H49D | Cat | Gat | 2 | 2 | 0.111111 | |
S | 49 | H49Y | Cat | Tat | 2 | 2 | A.2 | 0.001324 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | AA.1 | 0.014493 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | AD.2 | 0.000438 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | AH.3 | 0.007605 |
S | 49 | H49C | CAt | TGt | 2 | 2 | All | 0 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | AU.2 | 0.004843 |
S | 49 | H49del | CAT | --- | 2 | 2 | AY.101 | 0.000981 |
S | 49 | H49L | cAt | cTt | 2 | 2 | AY.102 | 0.000053 |
S | 49 | H49del | CAT | --- | 2 | 2 | AY.103 | 0.000012 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | AY.117 | 0.000169 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | AY.120.2.1 | 0.000997 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | AY.121 | 0.000271 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | AY.24 | 0.000862 |
S | 49 | H49del | CAT | --- | 2 | 2 | AY.26 | 0.000057 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | AY.4.5 | 0.000215 |
S | 49 | H49H | caT | caC | 2 | 2 | AY.44 | 0.000012 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | AY.46.4 | 0.000329 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | AY.55 | 0.001835 |
S | 49 | H49L | cAt | cTt | 2 | 2 | AY.6 | 0.000082 |
S | 49 | H49L | cAt | cTt | 2 | 2 | AY.61 | 0.00021 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | AY.62 | 0.000871 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | AY.74 | 0.000231 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | AY.9 | 0.000135 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | AY.92 | 0.000575 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | AY.94 | 0.000885 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | AY.98.1 | 0.000097 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | AY.99.2 | 0.000184 |
S | 49 | H49N | Cat | Aat | 2 | 2 | B | 0.000256 |
S | 49 | H49L | cAt | cTt | 2 | 2 | B.1 | 0.000018 |
S | 49 | H49H | caT | caC | 2 | 2 | B.1 | 0.000018 |
S | 49 | H49N | Cat | Aat | 2 | 2 | B.1 | 0.000018 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | B.1.1.10 | 0.00223 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | B.1.1.311 | 0.000716 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | B.1.1.316 | 0.00185 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | B.1.1.372 | 0.001377 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | B.1.1.409 | 0.005666 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | B.1.1.448 | 0.004065 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | B.1.1.486 | 0.003155 |
S | 49 | H49L | cAt | cTt | 2 | 2 | B.1.1.7 | 0.000002 |
S | 49 | H49del2 | CAt | --t | 1 | 2 | B.1.1.7 | 0.000001 |
S | 49 | H49del2 | cAT | c-- | 1 | 2 | B.1.1.7 | 0.000001 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | B.1.110.3 | 0.001437 |
S | 49 | H49del | CAT | --- | 2 | 2 | B.1.160 | 0.000062 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | B.1.177.44 | 0.001038 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | B.1.177.60 | 0.000437 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | B.1.195 | 0.01005 |
S | 49 | H49del1 | Cat | -at | 1 | 2 | B.1.2 | 0.000009 |
S | 49 | H49del1 | caT | ca- | 1 | 2 | B.1.2 | 0.000009 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | B.1.214.3 | 0.014286 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | B.1.219 | 0.018868 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | B.1.232 | 0.001075 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | B.1.265 | 0.002541 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | B.1.36.18 | 0.00084 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | B.1.361 | 0.002577 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | B.1.382 | 0.017857 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | B.1.445 | 0.023529 |
S | 49 | H49H | caT | caC | 2 | 2 | B.1.456 | 0.006536 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | B.1.468 | 0.011429 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | B.1.470 | 0.002809 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | B.1.497 | 0.00063 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | B.1.523 | 0.004902 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | B.1.560 | 0.009259 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | B.1.595 | 0.000522 |
S | 49 | H49R | cAt | cGt | 2 | 2 | B.1.617.2 | 0.000008 |
S | 49 | H49del | CAT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | B.1.626 | 0.011429 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | B.1.634 | 0.006849 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | B.4 | 0.004415 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | B.4.7 | 0.020202 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | C.16 | 0.002121 |
S | 49 | H49H | caT | caC | 2 | 2 | P.1 | 0.000032 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | P.1.12 | 0.000968 |
S | 49 | H49Y | Cat | Tat | 2 | 2 | Q.3 | 0.00029 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | A.2.2 | 0.001689 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | A.2.5 | 0.000499 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | A.2.5.1 | 0.004808 |
S | 49 | H49H | caT | caC | 1 | 1 | A.23.1 | 0.000704 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | A.23.1 | 0.000704 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | A.28 | 0.002646 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | A.4 | 0.012821 |
S | 49 | H49H | caT | caC | 1 | 1 | AE.1 | 0.011364 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | AE.5 | 0.018519 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | AE.7 | 0.083333 |
S | 49 | H49F | CAt | TTt | 1 | 1 | All | 0 |
S | 49 | H49P | cAt | cCt | 1 | 1 | All | 0 |
S | 49 | H49H | caT | caC | 1 | 1 | AU.1 | 0.001266 |
S | 49 | H49del2 | CAT | --N | 1 | 1 | AY.100 | 0.000046 |
S | 49 | H49L | cAt | cTt | 1 | 1 | AY.103 | 0.000006 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | AY.106 | 0.000335 |
S | 49 | H49del | CAT | --- | 1 | 1 | AY.108 | 0.001103 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | AY.111 | 0.000183 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | AY.116 | 0.000287 |
S | 49 | H49H | caT | caC | 1 | 1 | AY.120 | 0.000037 |
S | 49 | H49del | CAT | --- | 1 | 1 | AY.120 | 0.000037 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | AY.16 | 0.00038 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | AY.16.1 | 0.00047 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | AY.2 | 0.000356 |
S | 49 | H49H | caT | caC | 1 | 1 | AY.20 | 0.000039 |
S | 49 | H49del | CAT | --- | 1 | 1 | AY.20 | 0.000039 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | AY.23.1 | 0.000417 |
S | 49 | H49R | cAt | cGt | 1 | 1 | AY.25 | 0.000006 |
S | 49 | H49L | cAt | cTt | 1 | 1 | AY.26 | 0.000028 |
S | 49 | H49D | Cat | Gat | 1 | 1 | AY.29 | 0.000016 |
S | 49 | H49H | caT | caC | 1 | 1 | AY.29 | 0.000016 |
S | 49 | H49Q | caT | caG | 1 | 1 | AY.29 | 0.000016 |
S | 49 | H49L | cAt | cTt | 1 | 1 | AY.29 | 0.000016 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | AY.29.1 | 0.000221 |
S | 49 | H49H | caT | caC | 1 | 1 | AY.3 | 0.00001 |
S | 49 | H49R | cAt | cGt | 1 | 1 | AY.3 | 0.00001 |
S | 49 | H49D | Cat | Gat | 1 | 1 | AY.3 | 0.00001 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | AY.32 | 0.000532 |
S | 49 | H49L | cAt | cTt | 1 | 1 | AY.32 | 0.000532 |
S | 49 | H49L | cAt | cTt | 1 | 1 | AY.33 | 0.000067 |
S | 49 | H49del | CAT | --- | 1 | 1 | AY.34.1 | 0.00051 |
S | 49 | H49H | caT | caC | 1 | 1 | AY.35 | 0.000233 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | AY.37 | 0.000316 |
S | 49 | H49L | cAt | cTt | 1 | 1 | AY.39 | 0.000025 |
S | 49 | H49del | CAT | --- | 1 | 1 | AY.39 | 0.000025 |
S | 49 | H49R | cAt | cGt | 1 | 1 | AY.4 | 0.000002 |
S | 49 | H49H | caT | caC | 1 | 1 | AY.4.2 | 0.000022 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 49 | H49H | caT | caC | 1 | 1 | AY.4.4 | 0.000409 |
S | 49 | H49H | caT | caC | 1 | 1 | AY.4.5 | 0.000107 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | AY.41 | 0.000294 |
S | 49 | H49N | Cat | Aat | 1 | 1 | AY.42 | 0.00004 |
S | 49 | H49del | CAT | --- | 1 | 1 | AY.42 | 0.00004 |
S | 49 | H49N | Cat | Aat | 1 | 1 | AY.43 | 0.000004 |
S | 49 | H49D | Cat | Gat | 1 | 1 | AY.43 | 0.000004 |
S | 49 | H49H | caT | caC | 1 | 1 | AY.43 | 0.000004 |
S | 49 | H49del | CAT | --- | 1 | 1 | AY.44 | 0.000006 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | AY.46.2 | 0.000635 |
S | 49 | H49del | CAT | --- | 1 | 1 | AY.5.3 | 0.000337 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | AY.53 | 0.000288 |
S | 49 | H49del | CAT | --- | 1 | 1 | AY.60 | 0.000938 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | AY.67 | 0.000464 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | AY.68 | 0.000274 |
S | 49 | H49del | CAT | --- | 1 | 1 | AY.68 | 0.000274 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | AY.69 | 0.000187 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | AY.7.1 | 0.000113 |
S | 49 | H49del | CAT | --- | 1 | 1 | AY.72 | 0.001361 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | AY.73 | 0.000665 |
S | 49 | H49L | cAt | cTt | 1 | 1 | AY.74 | 0.000116 |
S | 49 | H49F | CAt | TTt | 1 | 1 | AY.75 | 0.000056 |
S | 49 | H49L | cAt | cTt | 1 | 1 | AY.75.1 | 0.00018 |
S | 49 | H49L | cAt | cTt | 1 | 1 | AY.78 | 0.001541 |
S | 49 | H49del | CAT | --- | 1 | 1 | AY.78 | 0.001541 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | AY.84 | 0.000437 |
S | 49 | H49del | CAT | --- | 1 | 1 | AY.85 | 0.000427 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | AY.85 | 0.000427 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | AY.88 | 0.000884 |
S | 49 | H49del | CAT | --- | 1 | 1 | AY.9 | 0.000068 |
S | 49 | H49L | cAt | cTt | 1 | 1 | AY.9 | 0.000068 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | AY.9.2.1 | 0.001976 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | AY.93 | 0.000273 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | AZ.2 | 0.000821 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | AZ.5 | 0.003509 |
S | 49 | H49H | caT | caC | 1 | 1 | B | 0.000128 |
S | 49 | H49D | Cat | Gat | 1 | 1 | B.1 | 0.000009 |
S | 49 | H49P | cAt | cCt | 1 | 1 | B.1 | 0.000009 |
S | 49 | H49G | CAT | GGG | 1 | 1 | B.1.1 | 0.000018 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.1.117 | 0.009709 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.1.138 | 0.006061 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.1.145 | 0.037037 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.1.176 | 0.000439 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.1.189 | 0.001513 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.1.203 | 0.016949 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.1.205 | 0.003717 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.1.207 | 0.001182 |
S | 49 | H49H | caT | caC | 1 | 1 | B.1.1.222 | 0.000204 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.1.237 | 0.005405 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.1.239 | 0.032258 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.1.273 | 0.006757 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.1.285 | 0.006536 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.1.291 | 0.000742 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.1.294 | 0.001266 |
S | 49 | H49del | CAT | --- | 1 | 1 | B.1.1.306 | 0.000438 |
S | 49 | H49C | CAt | TGt | 1 | 1 | B.1.1.306 | 0.000438 |
S | 49 | H49del | CAT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
S | 49 | H49H | caT | caC | 1 | 1 | B.1.1.317 | 0.000412 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.1.327 | 0.1 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.1.363 | 0.005988 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.1.374 | 0.002375 |
S | 49 | H49L | cAt | cTt | 1 | 1 | B.1.1.374 | 0.002375 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.1.39 | 0.00051 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.1.440 | 0.011765 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.1.462 | 0.008621 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.1.47 | 0.005348 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.1.48 | 0.002874 |
S | 49 | H49H | caT | caC | 1 | 1 | B.1.1.519 | 0.00004 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.1.525 | 0.005464 |
S | 49 | H49del1 | Cat | -at | 1 | 1 | B.1.1.7 | 0.000001 |
S | 49 | H49I | CAt | ATt | 1 | 1 | B.1.1.7 | 0.000001 |
S | 49 | H49del | CAT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.104 | 0.00369 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.157 | 0.002985 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.158 | 0.02381 |
S | 49 | H49I | CAt | ATt | 1 | 1 | B.1.160 | 0.000031 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.160.9 | 0.007194 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.170 | 0.00431 |
S | 49 | H49L | cAt | cTt | 1 | 1 | B.1.177 | 0.000013 |
S | 49 | H49H | caT | caC | 1 | 1 | B.1.177 | 0.000013 |
S | 49 | H49N | Cat | Aat | 1 | 1 | B.1.177 | 0.000013 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.177.10 | 0.000878 |
S | 49 | H49del | CAT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.177.17 | 0.000821 |
S | 49 | H49del | CAT | --- | 1 | 1 | B.1.177.19 | 0.001431 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.177.20 | 0.001517 |
S | 49 | H49del1 | Cat | -at | 1 | 1 | B.1.177.4 | 0.000211 |
S | 49 | H49del | CAT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.177.54 | 0.000606 |
S | 49 | H49del | CAT | --- | 1 | 1 | B.1.177.56 | 0.000668 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.177.56 | 0.000668 |
S | 49 | H49Q | caT | caG | 1 | 1 | B.1.177.6 | 0.000977 |
S | 49 | H49H | caT | caC | 1 | 1 | B.1.177.63 | 0.002703 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.177.7 | 0.000165 |
S | 49 | H49del | CAT | --- | 1 | 1 | B.1.177.7 | 0.000165 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.177.8 | 0.000752 |
S | 49 | H49del | CAT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
S | 49 | H49del | CAT | --- | 1 | 1 | B.1.179 | 0.003759 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.189 | 0.004292 |
S | 49 | H49Q | caT | caG | 1 | 1 | B.1.2 | 0.000009 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.206 | 0.000816 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.235 | 0.002519 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.236 | 0.002053 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.239 | 0.001221 |
S | 49 | H49C | CAt | TGt | 1 | 1 | B.1.258 | 0.000067 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.258.14 | 0.00098 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.258.17 | 0.000104 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.302 | 0.013333 |
S | 49 | H49L | cAt | cTt | 1 | 1 | B.1.305 | 0.002151 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.319 | 0.003049 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.320 | 0.001245 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.337 | 0.005587 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.340 | 0.004292 |
S | 49 | H49H | caT | caC | 1 | 1 | B.1.36 | 0.000146 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.36.1 | 0.00114 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.36.10 | 0.004785 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.36.19 | 0.009259 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.36.28 | 0.005747 |
S | 49 | H49del | CAT | --- | 1 | 1 | B.1.36.29 | 0.000517 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.389 | 0.001002 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.405 | 0.012346 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.408 | 0.00369 |
S | 49 | H49L | cAt | cTt | 1 | 1 | B.1.427 | 0.00005 |
S | 49 | H49H | caT | caC | 1 | 1 | B.1.427 | 0.00005 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.428 | 0.00102 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.432 | 0.011236 |
S | 49 | H49L | cAt | cTt | 1 | 1 | B.1.459 | 0.004082 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.469 | 0.00361 |
S | 49 | H49del | CAT | --- | 1 | 1 | B.1.470 | 0.001404 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.503 | 0.002488 |
S | 49 | H49del | CAT | --- | 1 | 1 | B.1.526 | 0.000024 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.538 | 0.008065 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.545 | 0.014493 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.546 | 0.003704 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.561 | 0.000397 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.575.1 | 0.002439 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.576 | 0.000907 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.580 | 0.004065 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.581 | 0.009434 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.587 | 0.001898 |
S | 49 | H49Q | caT | caG | 1 | 1 | B.1.596 | 0.000087 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.599 | 0.00365 |
S | 49 | H49del | CAT | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 49 | H49del | CAT | --- | 1 | 1 | B.1.621 | 0.000089 |
S | 49 | H49N | Cat | Aat | 1 | 1 | B.1.637 | 0.000073 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.1.88.1 | 0.004808 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.10 | 0.008264 |
S | 49 | H49Q | caT | caA | 1 | 1 | B.19 | 0.037037 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.3 | 0.000831 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.40 | 0.000364 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.52 | 0.010101 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | B.61 | 0.005747 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | C.17 | 0.055556 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | C.30 | 0.001727 |
S | 49 | H49del | CAT | --- | 1 | 1 | C.36 | 0.000911 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | C.36.3.1 | 0.002717 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | L.1 | 0.001905 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | L.2 | 0.011364 |
S | 49 | H49del | CAT | --- | 1 | 1 | P.1 | 0.000016 |
S | 49 | H49L | cAt | cTt | 1 | 1 | P.1 | 0.000016 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | P.1.13 | 0.000898 |
S | 49 | H49R | cAt | cGt | 1 | 1 | P.1.17 | 0.000162 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | P.1.8 | 0.004785 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | P.3 | 0.001595 |
S | 49 | H49L | cAt | cTt | 1 | 1 | Q.1 | 0.000126 |
S | 49 | H49del | CAT | --- | 1 | 1 | Q.1 | 0.000126 |
S | 49 | H49del | CAT | --- | 1 | 1 | Q.2 | 0.000613 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | W.1 | 0.008696 |
S | 49 | H49Y | Cat | Tat | 1 | 1 | Z.1 | 0.00289 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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