CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 483

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S483V483FnonsynGttTtt27472747123009-23011
S483V483VsyngtTgtC9118530.93633423009-23011
S483V483VsyngtTgtA911520.057080123009-23011
S483V483VsyngtTgtG91160.0065861723009-23011
S483V483AnonsyngTtgCt856856123009-23011
S483V483InonsynGttAtt354354123009-23011
S483V483LnonsynGttCtt146146123009-23011
S483V483deldelGTT---6868123009-23011
S483V483GnonsyngTtgGt3030123009-23011
S483V483del1delgTtg-t840.523009-23011
S483V483del1delGtt-tt820.2523009-23011
S483V483del1delgtTgt-810.12523009-23011
S483V483del1delGtT-tG810.12523009-23011
S483V483DnonsyngTtgAt430.7523009-23011
S483V483DnonsyngTTgAC410.2523009-23011
S483V483del2delGTt--t320.66666723009-23011
S483V483del2delgTTg--310.33333323009-23011
S483V483SnonsynGTtAGt22123009-23011
S483V483TnonsynGTtACt11123009-23011
S483V483MnonsynGtTAtG11123009-23011

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S483V483FGttTtt27472747All0.000525
S483V483VgtTgtC853911All0.000163
S483V483VgtTgtA52911All0.00001
S483V483VgtTgtG6911All0.000001
S483V483AgTtgCt856856All0.000164
S483V483VgtTgtC757762B.1.1.70.000678
S483V483VgtTgtA3762B.1.1.70.000003
S483V483VgtTgtG2762B.1.1.70.000002
S483V483FGttTtt566566AY.60.023279
S483V483FGttTtt390390B.1.1.70.000349
S483V483FGttTtt375375AY.40.000584
S483V483AgTtgCt355355B.1.10.00644
S483V483IGttAtt354354All0.000068
S483V483FGttTtt230230B.1.617.20.000866
S483V483FGttTtt175175AY.430.000775
S483V483AgTtgCt163163B.1.1.70.000146
S483V483IGttAtt154154AY.40.00024
S483V483LGttCtt146146All0.000028
S483V483FGttTtt6969AY.250.000415
S483V483delGTT---6868All0.000013
S483V483FGttTtt5858AY.1030.00036
S483V483AgTtgCt5252A.10.014656
S483V483FGttTtt5050AY.270.003236
S483V483FGttTtt4848AY.390.001186
S483V483FGttTtt4646AY.30.000458
S483V483FGttTtt4141B.1.5260.000964
S483V483AgTtgCt4040B.1.6160.97561
S483V483FGttTtt3939AY.130.006278
S483V483FGttTtt3737AY.440.000225
S483V483IGttAtt3232AY.50.000661
S483V483FGttTtt3131AY.1020.000822
S483V483FGttTtt3131B.1.1.1890.046899
S483V483GgTtgGt3030All0.000006
S483V483IGttAtt3030B.1.1.70.000027
S483V483FGttTtt2828AY.1180.001754
S483V483FGttTtt2828B.1.4290.000659
S483V483LGttCtt2626B.1.617.20.000098
S483V483VgtTgtA1224AY.40.000019
S483V483VgtTgtC1024AY.40.000016
S483V483VgtTgtG224AY.40.000003
S483V483delGTT---2323AY.440.00014
S483V483AgTtgCt2222AY.250.000132
S483V483FGttTtt2222AY.290.000347
S483V483AgTtgCt2222AY.30.000219
S483V483LGttCtt2121AY.430.000093
S483V483IGttAtt2121AY.99.20.001935
S483V483IGttAtt2020AY.390.000494
S483V483IGttAtt1919B.1.20.000167
S483V483AgTtgCt1818AY.1080.019846
S483V483FGttTtt1818AY.980.001422
S483V483FGttTtt1818B.10.000165
S483V483FGttTtt1818B.1.20.000158
S483V483AgTtgCt1818P.1.10.005718
S483V483VgtTgtA1717B.1.5770.011684
S483V483FGttTtt1616AY.4.20.000347
S483V483AgTtgCt1616B.1.617.20.00006
S483V483VgtTgtC1515AY.7.10.001691
S483V483VgtTgtC1414AY.1030.000087
S483V483AgTtgCt1414C.360.01275
S483V483FGttTtt1313P.10.000205
S483V483FGttTtt1212AY.330.000801
S483V483FGttTtt1111AY.50.000227
S483V483FGttTtt1111AY.750.000616
S483V483FGttTtt1010AY.260.000283
S483V483AgTtgCt1010AY.40.000016
S483V483LGttCtt1010AY.4.20.000217
S483V483delGTT---1010AY.430.000044
S483V483FGttTtt1010AY.9.20.000367
S483V483AgTtgCt1010B.10.000092
S483V483FGttTtt1010B.1.10.000181
S483V483IGttAtt99AY.430.00004
S483V483LGttCtt99AY.440.000055
S483V483IGttAtt99B.1.617.20.000034
S483V483FGttTtt99B.1.6210.000797
S483V483del1gTtg-t48All0.000001
S483V483del1Gtt-tt28All0
S483V483del1GtT-tG18All0
S483V483del1gtTgt-18All0
S483V483GgTtgGt88AY.1000.000368
S483V483LGttCtt88AY.1200.000297
S483V483FGttTtt88AY.120.2.10.003986
S483V483FGttTtt88AY.230.000558
S483V483AgTtgCt88AY.320.00426
S483V483FGttTtt88AY.46.60.000578
S483V483FGttTtt88AY.470.000249
S483V483LGttCtt77AY.40.000011
S483V483FGttTtt77AY.98.10.000339
S483V483VgtTgtC77B.1.1.250.00398
S483V483FGttTtt77B.1.4250.020958
S483V483FGttTtt77B.1.6370.000512
S483V483FGttTtt66AY.1110.001099
S483V483FGttTtt66AY.1190.000212
S483V483FGttTtt66AY.1200.000223
S483V483FGttTtt66AY.420.000241
S483V483FGttTtt66AY.9.10.000502
S483V483LGttCtt66AY.98.10.000291
S483V483FGttTtt66B.1.1770.000079
S483V483FGttTtt66B.1.4270.000303
S483V483GgTtgGt66B.1.617.20.000023
S483V483FGttTtt66C.370.000696
S483V483FGttTtt55AY.200.000194
S483V483VgtTgtC55AY.390.000124
S483V483FGttTtt55AY.39.10.000198
S483V483FGttTtt55AY.4.2.10.000745
S483V483FGttTtt55AY.410.00147
S483V483AgTtgCt55AY.430.000022
S483V483AgTtgCt55AY.440.00003
S483V483FGttTtt55AY.46.20.003177
S483V483FGttTtt55AY.610.000524
S483V483delGTT---55AY.70.00098
S483V483FGttTtt55AY.75.10.000902
S483V483LGttCtt55B.1.1.70.000004
S483V483FGttTtt55B.1.177.120.000758
S483V483AgTtgCt55B.1.20.000044
S483V483FGttTtt55B.1.2430.000348
S483V483AgTtgCt55B.1.36.180.002101
S483V483VgtTgtA55B.1.3690.001426
S483V483AgTtgCt55B.1.5960.000436
S483V483FGttTtt55Q.70.005556
S483V483DgTtgAt34All0.000001
S483V483DgTTgAC14All0
S483V483FGttTtt44AY.120.10.001284
S483V483IGttAtt44AY.260.000113
S483V483FGttTtt44AY.460.000416
S483V483AgTtgCt44AY.50.000083
S483V483FGttTtt44AY.530.00115
S483V483FGttTtt44AY.720.005442
S483V483FGttTtt44AY.740.000463
S483V483LGttCtt44AY.9.20.000147
S483V483VgtTgtC24B.10.000018
S483V483VgtTgtA24B.10.000018
S483V483FGttTtt44B.1.2320.002149
S483V483AgTtgCt44B.1.3240.006421
S483V483GgTtgGt44B.1.4290.000094
S483V483AgTtgCt44B.1.5260.000094
S483V483del1gTtg-t34B.1.617.20.000011
S483V483del1GtT-tG14B.1.617.20.000004
S483V483LGttCtt44B.1.617.30.01194
S483V483FGttTtt44P.1.140.000191
S483V483del2GTt--t23All0
S483V483del2gTTg--13All0
S483V483FGttTtt33AY.1000.000138
S483V483LGttCtt33AY.1020.00008
S483V483FGttTtt33AY.1060.001005
S483V483FGttTtt33AY.1170.000254
S483V483LGttCtt33AY.1190.000106
S483V483VgtTgtC33AY.130.000483
S483V483FGttTtt33AY.140.000264
S483V483VgtTgtC33AY.250.000018
S483V483IGttAtt33AY.250.000018
S483V483VgtTgtA23AY.320.001065
S483V483VgtTgtC13AY.320.000532
S483V483IGttAtt33AY.330.0002
S483V483FGttTtt33AY.340.000291
S483V483FGttTtt33AY.360.000445
S483V483delGTT---33AY.40.000005
S483V483FGttTtt33AY.4.10.002212
S483V483AgTtgCt33AY.420.000121
S483V483GgTtgGt33AY.430.000013
S483V483GgTtgGt33AY.440.000018
S483V483VgtTgtC33AY.620.001307
S483V483IGttAtt33AY.640.001786
S483V483FGttTtt33AY.730.001996
S483V483IGttAtt33B0.000383
S483V483AgTtgCt33B0.000383
S483V483VgtTgtC33B.1.10.000054
S483V483FGttTtt33B.1.1.10.00098
S483V483AgTtgCt33B.1.1.1610.010601
S483V483IGttAtt33B.1.1.3540.013158
S483V483AgTtgCt33B.1.1.4090.008499
S483V483FGttTtt33B.1.1.5190.000119
S483V483delGTT---33B.1.1.70.000003
S483V483VgtTgtC23B.1.20.000018
S483V483VgtTgtA13B.1.20.000009
S483V483VgtTgtC33B.1.2210.000213
S483V483IGttAtt33B.1.2580.0002
S483V483AgTtgCt33B.1.3200.003736
S483V483FGttTtt33B.1.351.20.000908
S483V483FGttTtt33B.1.3550.033333
S483V483LGttCtt33B.1.36.90.009646
S483V483AgTtgCt33B.1.4290.000071
S483V483IGttAtt33B.1.5260.000071
S483V483FGttTtt33B.1.5760.00272
S483V483VgtTgtC33B.1.617.20.000011
S483V483VgtTgtC33B.1.90.018519
S483V483AgTtgCt33C.36.30.001702
S483V483FGttTtt33C.36.30.001702
S483V483FGttTtt33P.20.00056
S483V483SGTtAGt220.111111
S483V483delGTT---220.111111
S483V483IGttAtt220.111111
S483V483SGTtAGt22All0
S483V483AgTtgCt22AY.1020.000053
S483V483LGttCtt22AY.1030.000012
S483V483IGttAtt22AY.1030.000012
S483V483FGttTtt22AY.1070.000932
S483V483FGttTtt22AY.1130.000285
S483V483FGttTtt22AY.1160.000574
S483V483AgTtgCt22AY.1190.000071
S483V483FGttTtt22AY.1210.000271
S483V483AgTtgCt22AY.130.000322
S483V483LGttCtt22AY.250.000012
S483V483FGttTtt22AY.4.30.001684
S483V483IGttAtt22AY.420.00008
S483V483VgtTgtC12AY.430.000004
S483V483VgtTgtA12AY.430.000004
S483V483IGttAtt22AY.440.000012
S483V483VgtTgtC22AY.440.000012
S483V483FGttTtt22AY.450.000243
S483V483LGttCtt22AY.450.000243
S483V483IGttAtt22AY.46.40.000329
S483V483GgTtgGt22AY.50.000041
S483V483LGttCtt22AY.550.001835
S483V483LGttCtt22AY.610.00021
S483V483FGttTtt22AY.670.000929
S483V483FGttTtt22AY.680.000547
S483V483FGttTtt22AY.7.10.000225
S483V483IGttAtt22AY.730.001331
S483V483delGTT---22AY.750.000112
S483V483FGttTtt22AY.90.000135
S483V483LGttCtt22AY.9.10.000167
S483V483FGttTtt22AY.930.000546
S483V483FGttTtt22AY.99.20.000184
S483V483IGttAtt22B.10.000018
S483V483del1Gtt-tt12B.10.000009
S483V483del1gtTgt-12B.10.000009
S483V483FGttTtt22B.1.1.2140.000111
S483V483VgtTgtA22B.1.1.2220.000408
S483V483FGttTtt22B.1.160.230.009662
S483V483AgTtgCt22B.1.1770.000026
S483V483FGttTtt22B.1.177.40.000422
S483V483AgTtgCt22B.1.2210.000142
S483V483FGttTtt22B.1.3510.000059
S483V483IGttAtt22B.1.351.50.001199
S483V483AgTtgCt22B.1.4270.000101
S483V483LGttCtt22B.1.4990.002101
S483V483AgTtgCt22B.1.5760.001813
S483V483delGTT---22B.1.617.20.000008
S483V483FGttTtt22B.1.6300.010471
S483V483LGttCtt22C.200.153846
S483V483AgTtgCt22P.10.000032
S483V483FGttTtt22P.1.150.000465
S483V483IGttAtt22Q.10.000253
S483V483FGttTtt11A.2.50.000499
S483V483FGttTtt11A.280.002646
S483V483AgTtgCt11AD.20.000219
S483V483TGTtACt11All0
S483V483MGtTAtG11All0
S483V483FGttTtt11AY.10.000396
S483V483IGttAtt11AY.10.000396
S483V483VgtTgtC11AY.1000.000046
S483V483FGttTtt11AY.1010.00049
S483V483AgTtgCt11AY.1010.00049
S483V483delGTT---11AY.1020.000027
S483V483VgtTgtC11AY.1020.000027
S483V483delGTT---11AY.1030.000006
S483V483IGttAtt11AY.1050.000643
S483V483delGTT---11AY.1070.000466
S483V483delGTT---11AY.1080.001103
S483V483FGttTtt11AY.1080.001103
S483V483LGttCtt11AY.1130.000142
S483V483delGTT---11AY.1130.000142
S483V483IGttAtt11AY.1170.000085
S483V483IGttAtt11AY.1180.000063
S483V483VgtTgtC11AY.1190.000035
S483V483del2GTt--t11AY.1190.000035
S483V483LGttCtt11AY.120.20.001285
S483V483FGttTtt11AY.160.00038
S483V483AgTtgCt11AY.160.00038
S483V483FGttTtt11AY.16.10.00047
S483V483AgTtgCt11AY.16.10.00047
S483V483FGttTtt11AY.190.00114
S483V483AgTtgCt11AY.200.000039
S483V483VgtTgtC11AY.200.000039
S483V483FGttTtt11AY.220.002092
S483V483LGttCtt11AY.230.00007
S483V483AgTtgCt11AY.230.00007
S483V483FGttTtt11AY.23.10.000417
S483V483VgtTgtG11AY.240.000431
S483V483delGTT---11AY.250.000006
S483V483LGttCtt11AY.260.000028
S483V483VgtTgtC11AY.260.000028
S483V483AgTtgCt11AY.270.000065
S483V483FGttTtt11AY.280.00189
S483V483AgTtgCt11AY.290.000016
S483V483LGttCtt11AY.29.10.000221
S483V483GgTtgGt11AY.30.00001
S483V483IGttAtt11AY.30.00001
S483V483LGttCtt11AY.30.00001
S483V483delGTT---11AY.30.00001
S483V483AgTtgCt11AY.3.10.000085
S483V483FGttTtt11AY.3.10.000085
S483V483FGttTtt11AY.300.000396
S483V483FGttTtt11AY.320.000532
S483V483AgTtgCt11AY.330.000067
S483V483FGttTtt11AY.34.10.00051
S483V483AgTtgCt11AY.390.000025
S483V483AgTtgCt11AY.39.10.00004
S483V483FGttTtt11AY.4.50.000107
S483V483FGttTtt11AY.400.000964
S483V483MGtTAtG11AY.420.00004
S483V483DgTTgAC11AY.420.00004
S483V483AgTtgCt11AY.450.000122
S483V483LGttCtt11AY.460.000104
S483V483FGttTtt11AY.46.10.001027
S483V483FGttTtt11AY.46.30.000934
S483V483FGttTtt11AY.46.50.000198
S483V483LGttCtt11AY.46.60.000072
S483V483LGttCtt11AY.50.000021
S483V483FGttTtt11AY.5.20.002463
S483V483IGttAtt11AY.5.30.000337
S483V483FGttTtt11AY.510.000909
S483V483FGttTtt11AY.590.00053
S483V483VgtTgtC11AY.590.00053
S483V483LGttCtt11AY.60.000041
S483V483FGttTtt11AY.630.000387
S483V483FGttTtt11AY.640.000595
S483V483LGttCtt11AY.680.000274
S483V483IGttAtt11AY.680.000274
S483V483VgtTgtC11AY.690.000187
S483V483FGttTtt11AY.70.000196
S483V483FGttTtt11AY.710.000475
S483V483VgtTgtC11AY.720.001361
S483V483IGttAtt11AY.75.10.00018
S483V483LGttCtt11AY.80.000606
S483V483LGttCtt11AY.800.001129
S483V483LGttCtt11AY.820.001357
S483V483FGttTtt11AY.830.001724
S483V483delGTT---11AY.840.000437
S483V483FGttTtt11AY.850.000427
S483V483AgTtgCt11AY.870.000833
S483V483FGttTtt11AY.880.000884
S483V483AgTtgCt11AY.9.10.000084
S483V483IGttAtt11AY.9.20.000037
S483V483FGttTtt11AY.910.00073
S483V483AgTtgCt11AY.920.000287
S483V483AgTtgCt11AY.98.10.000048
S483V483delGTT---11AY.990.001049
S483V483LGttCtt11AY.99.20.000092
S483V483del2gTTg--11AY.99.20.000092
S483V483delGTT---11B.10.000009
S483V483GgTtgGt11B.10.000009
S483V483LGttCtt11B.10.000009
S483V483IGttAtt11B.1.10.000018
S483V483IGttAtt11B.1.1.10.000327
S483V483delGTT---11B.1.1.1390.022727
S483V483VgtTgtA11B.1.1.1800.010753
S483V483FGttTtt11B.1.1.2160.00089
S483V483FGttTtt11B.1.1.2730.006757
S483V483FGttTtt11B.1.1.2840.000107
S483V483delGTT---11B.1.1.3060.000438
S483V483FGttTtt11B.1.1.3120.001912
S483V483AgTtgCt11B.1.1.3510.002793
S483V483FGttTtt11B.1.1.3540.004386
S483V483AgTtgCt11B.1.1.3700.012658
S483V483FGttTtt11B.1.1.3720.000689
S483V483AgTtgCt11B.1.1.390.00051
S483V483FGttTtt11B.1.1.4020.011111
S483V483FGttTtt11B.1.1.4160.000905
S483V483FGttTtt11B.1.1.4190.007407
S483V483VgtTgtA11B.1.1.4240.045455
S483V483IGttAtt11B.1.1.4470.035714
S483V483FGttTtt11B.1.1.50.008333
S483V483LGttCtt11B.1.1.5190.00004
S483V483AgTtgCt11B.1.1.5190.00004
S483V483IGttAtt11B.1.1.5190.00004
S483V483AgTtgCt11B.1.1.5240.020833
S483V483del2GTt--t11B.1.1.70.000001
S483V483GgTtgGt11B.1.1.70.000001
S483V483AgTtgCt11B.1.1.700.000341
S483V483FGttTtt11B.1.1.750.010638
S483V483del1gTtg-t11B.1.1130.015625
S483V483FGttTtt11B.1.1240.007812
S483V483AgTtgCt11B.1.1600.000031
S483V483IGttAtt11B.1.1600.000031
S483V483FGttTtt11B.1.1600.000031
S483V483VgtTgtC11B.1.1600.000031
S483V483LGttCtt11B.1.1600.000031
S483V483VgtTgtC11B.1.160.140.002119
S483V483DgTtgAt11B.1.1770.000013
S483V483FGttTtt11B.1.177.100.000878
S483V483IGttAtt11B.1.177.170.000821
S483V483FGttTtt11B.1.177.210.000076
S483V483FGttTtt11B.1.177.600.000218
S483V483AgTtgCt11B.1.177.730.000566
S483V483AgTtgCt11B.1.177.750.001041
S483V483VgtTgtA11B.1.177.820.000477
S483V483VgtTgtG11B.1.177.860.000183
S483V483delGTT---11B.1.20.000009
S483V483FGttTtt11B.1.214.20.0006
S483V483FGttTtt11B.1.2210.000071
S483V483LGttCtt11B.1.221.30.000833
S483V483AgTtgCt11B.1.2400.000216
S483V483IGttAtt11B.1.2400.000216
S483V483LGttCtt11B.1.2410.000812
S483V483FGttTtt11B.1.2410.000812
S483V483AgTtgCt11B.1.2580.000067
S483V483VgtTgtA11B.1.2580.000067
S483V483VgtTgtA11B.1.2840.013158
S483V483FGttTtt11B.1.3460.001311
S483V483AgTtgCt11B.1.3510.00003
S483V483delGTT---11B.1.3510.00003
S483V483FGttTtt11B.1.351.30.000876
S483V483VgtTgtA11B.1.360.000146
S483V483AgTtgCt11B.1.360.000146
S483V483FGttTtt11B.1.360.000146
S483V483FGttTtt11B.1.36.160.001425
S483V483FGttTtt11B.1.36.170.000494
S483V483DgTtgAt11B.1.36.180.00042
S483V483FGttTtt11B.1.36.220.001208
S483V483del1Gtt-tt11B.1.3700.008
S483V483AgTtgCt11B.1.3900.010638
S483V483VgtTgtC11B.1.3990.001934
S483V483VgtTgtC11B.1.4290.000024
S483V483FGttTtt11B.1.4340.052632
S483V483FGttTtt11B.1.4560.003268
S483V483VgtTgtA11B.1.466.20.000391
S483V483LGttCtt11B.1.5260.000024
S483V483delGTT---11B.1.5260.000024
S483V483AgTtgCt11B.1.5600.00463
S483V483DgTtgAt11B.1.5820.000491
S483V483FGttTtt11B.1.5950.000261
S483V483FGttTtt11B.1.5960.000087
S483V483FGttTtt11B.1.6000.005848
S483V483FGttTtt11B.1.619.10.000641
S483V483delGTT---11B.1.6200.000946
S483V483FGttTtt11B.1.621.10.000506
S483V483FGttTtt11B.1.6230.000536
S483V483delGTT---11B.340.013699
S483V483AgTtgCt11B.580.010204
S483V483AgTtgCt11C.160.00106
S483V483VgtTgtC11C.370.000116
S483V483VgtTgtC11P.10.000016
S483V483IGttAtt11P.10.000016
S483V483delGTT---11P.1.10.000318
S483V483VgtTgtC11P.1.170.000162
S483V483FGttTtt11P.1.20.001156
S483V483FGttTtt11Q.10.000126
S483V483GgTtgGt11Q.10.000126
S483V483FGttTtt11Q.60.006623
S483V483TGTtACt11Q.80.000165
S483V483VgtTgtC11Q.80.000165