CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 481

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S481N481NsynaaTaaC866866123003-23005
S481N481KnonsynaaTaaG4382290.52283123003-23005
S481N481KnonsynaaTaaA4382090.47716923003-23005
S481N481SnonsynaAtaGt104104123003-23005
S481N481DnonsynAatGat6969123003-23005
S481N481deldelAAT---4747123003-23005
S481N481InonsynaAtaTt4444123003-23005
S481N481YnonsynAatTat3131123003-23005
S481N481TnonsynaAtaCt17160.94117623003-23005
S481N481TnonsynaATaCA1710.058823523003-23005
S481N481HnonsynAatCat1111123003-23005
S481N481del2delaATa--320.66666723003-23005
S481N481del2delAAT--C310.33333323003-23005
S481N481QnonsynAaTCaG22123003-23005
S481N481EnonsynAaTGaG11123003-23005
S481N481AnonsynAAtGCt11123003-23005
S481N481CnonsynAAtTGt11123003-23005

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S481N481NaaTaaC866866All0.000166
S481N481NaaTaaC486486P.10.007656
S481N481KaaTaaG229438All0.000044
S481N481KaaTaaA209438All0.00004
S481N481NaaTaaC134134AY.1200.004982
S481N481KaaTaaA124124B.1.1.500.084182
S481N481SaAtaGt104104All0.00002
S481N481KaaTaaG7474B.1.4280.07551
S481N481DAatGat6969All0.000013
S481N481KaaTaaG6969B.1.428.30.884615
S481N481delAAT---4747All0.000009
S481N481NaaTaaC4747B.1.1.70.000042
S481N481IaAtaTt4444All0.000008
S481N481KaaTaaA2133B.1.1.70.000019
S481N481KaaTaaG1233B.1.1.70.000011
S481N481YAatTat3131All0.000006
S481N481NaaTaaC2929B.1.617.20.000109
S481N481SaAtaGt2424B.1.1.70.000021
S481N481NaaTaaC2323B.1.1770.000303
S481N481KaaTaaG1720B.1.10.000308
S481N481KaaTaaA320B.1.10.000054
S481N481KaaTaaA1619AY.40.000025
S481N481KaaTaaG319AY.40.000005
S481N481KaaTaaG1419B.10.000128
S481N481KaaTaaA519B.10.000046
S481N481NaaTaaC1919B.1.1.5190.000755
S481N481NaaTaaC1818AY.30.000179
S481N481TaAtaCt1617All0.000003
S481N481TaATaCA117All0
S481N481DAatGat1515AY.40.000023
S481N481NaaTaaC1515B.1.20.000132
S481N481KaaTaaG1414B.1.5950.003653
S481N481IaAtaTt1313AY.40.00002
S481N481NaaTaaC1313AY.510.011818
S481N481NaaTaaC1313C.370.001509
S481N481HAatCat1111All0.000002
S481N481DAatGat1111B.1.1.740.047414
S481N481delAAT---1010AY.430.000044
S481N481IaAtaTt88AY.1030.00005
S481N481NaaTaaC88AY.440.000049
S481N481SaAtaGt88B.1.1.3550.123077
S481N481SaAtaGt77AY.40.000011
S481N481NaaTaaC77AY.40.000011
S481N481SaAtaGt77B.1.4270.000353
S481N481SaAtaGt66AY.440.000037
S481N481SaAtaGt66B.10.000055
S481N481delAAT---66B.1.1.70.000005
S481N481SaAtaGt55AY.1030.000031
S481N481YAatTat55AY.40.000008
S481N481IaAtaTt55AY.4.50.000537
S481N481NaaTaaC55B.10.000046
S481N481YAatTat55B.1.4290.000118
S481N481SaAtaGt55B.1.617.20.000019
S481N481KaaTaaG55B.1.617.20.000019
S481N481NaaTaaC55P.1.120.00242
S481N481HAatCat44AY.1030.000025
S481N481SaAtaGt44AY.430.000018
S481N481DAatGat44AY.470.000124
S481N481KaaTaaA44AY.860.00332
S481N481IaAtaTt44B.1.1.70.000004
S481N481DAatGat44B.1.617.20.000015
S481N481del2aATa--23All0
S481N481del2AAT--C13All0
S481N481SaAtaGt33AY.1000.000138
S481N481NaaTaaC33AY.1030.000019
S481N481DAatGat33AY.1030.000019
S481N481SaAtaGt33AY.1130.000427
S481N481DAatGat33AY.250.000018
S481N481KaaTaaA23AY.250.000012
S481N481KaaTaaG13AY.250.000006
S481N481NaaTaaC33AY.39.10.000119
S481N481YAatTat33AY.39.10.000119
S481N481KaaTaaA23AY.430.000009
S481N481KaaTaaG13AY.430.000004
S481N481NaaTaaC33AY.60.000123
S481N481SaAtaGt33AY.850.001282
S481N481DAatGat33B.10.000027
S481N481YAatTat33B.1.1.70.000003
S481N481DAatGat33B.1.1.70.000003
S481N481YAatTat33B.1.221.30.0025
S481N481NaaTaaC33B.1.2580.0002
S481N481KaaTaaA33B.1.6210.000266
S481N481KaaTaaA33B.1.6370.000219
S481N481IaAtaTt220.111111
S481N481delAAT---220.111111
S481N481QAaTCaG22All0
S481N481KaaTaaG22AY.1200.000074
S481N481NaaTaaC22AY.250.000012
S481N481delAAT---22AY.250.000012
S481N481delAAT---22AY.40.000003
S481N481DAatGat22AY.430.000009
S481N481KaaTaaA22AY.440.000012
S481N481IaAtaTt22AY.440.000012
S481N481NaaTaaC22AY.460.000208
S481N481KaaTaaG22AY.470.000062
S481N481SaAtaGt22AY.670.000929
S481N481delAAT---22AY.750.000112
S481N481TaAtaCt22AY.750.000112
S481N481TaAtaCt22B.10.000018
S481N481HAatCat22B.1.10.000036
S481N481DAatGat22B.1.1.2160.001781
S481N481TaAtaCt22B.1.1.70.000002
S481N481KaaTaaA22B.1.1450.105263
S481N481KaaTaaG12B.1.1600.000031
S481N481KaaTaaA12B.1.1600.000031
S481N481KaaTaaA12B.1.177.810.000189
S481N481KaaTaaG12B.1.177.810.000189
S481N481KaaTaaA22B.1.2320.001075
S481N481DAatGat22B.1.258.170.000208
S481N481NaaTaaC22B.1.466.20.000782
S481N481KaaTaaG22B.1.5260.000047
S481N481KaaTaaA22B.1.6090.000959
S481N481YAatTat22B.1.617.20.000008
S481N481delAAT---22B.1.617.20.000008
S481N481YAatTat22C.36.30.001134
S481N481IaAtaTt22D.20.00015
S481N481NaaTaaC11A.2.40.003367
S481N481CAAtTGt11All0
S481N481EAaTGaG11All0
S481N481AAAtGCt11All0
S481N481delAAT---11AY.1020.000027
S481N481SaAtaGt11AY.1020.000027
S481N481KaaTaaA11AY.1020.000027
S481N481KaaTaaG11AY.1030.000006
S481N481delAAT---11AY.1030.000006
S481N481TaAtaCt11AY.1070.000466
S481N481delAAT---11AY.1070.000466
S481N481delAAT---11AY.1080.001103
S481N481delAAT---11AY.1130.000142
S481N481KaaTaaA11AY.1140.000231
S481N481TaAtaCt11AY.1180.000063
S481N481DAatGat11AY.1190.000035
S481N481delAAT---11AY.1190.000035
S481N481NaaTaaC11AY.1190.000035
S481N481SaAtaGt11AY.120.000316
S481N481DAatGat11AY.1200.000037
S481N481NaaTaaC11AY.1210.000135
S481N481TaAtaCt11AY.130.000161
S481N481TaAtaCt11AY.140.000088
S481N481SaAtaGt11AY.160.00038
S481N481KaaTaaA11AY.230.00007
S481N481SaAtaGt11AY.250.000006
S481N481DAatGat11AY.260.000028
S481N481IaAtaTt11AY.30.00001
S481N481DAatGat11AY.30.00001
S481N481delAAT---11AY.30.00001
S481N481KaaTaaG11AY.30.00001
S481N481YAatTat11AY.30.00001
S481N481IaAtaTt11AY.330.000067
S481N481YAatTat11AY.34.10.00051
S481N481IaAtaTt11AY.350.000233
S481N481SaAtaGt11AY.350.000233
S481N481SaAtaGt11AY.390.000025
S481N481KaaTaaA11AY.390.000025
S481N481NaaTaaC11AY.4.20.000022
S481N481NaaTaaC11AY.4.50.000107
S481N481KaaTaaG11AY.400.000964
S481N481AAAtGCt11AY.420.00004
S481N481TaAtaCt11AY.420.00004
S481N481TaAtaCt11AY.430.000004
S481N481del2AAT--C11AY.430.000004
S481N481NaaTaaC11AY.430.000004
S481N481YAatTat11AY.430.000004
S481N481HAatCat11AY.430.000004
S481N481YAatTat11AY.440.000006
S481N481delAAT---11AY.440.000006
S481N481DAatGat11AY.440.000006
S481N481delAAT---11AY.450.000122
S481N481IaAtaTt11AY.46.60.000072
S481N481NaaTaaC11AY.470.000031
S481N481SaAtaGt11AY.470.000031
S481N481NaaTaaC11AY.50.000021
S481N481SaAtaGt11AY.50.000021
S481N481DAatGat11AY.5.30.000337
S481N481NaaTaaC11AY.540.000095
S481N481NaaTaaC11AY.590.00053
S481N481IaAtaTt11AY.60.000041
S481N481SaAtaGt11AY.610.000105
S481N481SaAtaGt11AY.630.000387
S481N481SaAtaGt11AY.70.000196
S481N481NaaTaaC11AY.750.000056
S481N481NaaTaaC11AY.830.001724
S481N481YAatTat11AY.840.000437
S481N481delAAT---11AY.840.000437
S481N481YAatTat11AY.90.000068
S481N481DAatGat11AY.9.20.000037
S481N481KaaTaaA11AY.9.20.000037
S481N481DAatGat11AY.900.000684
S481N481NaaTaaC11AY.920.000287
S481N481KaaTaaG11AY.940.000443
S481N481YAatTat11AY.980.000079
S481N481delAAT---11AY.990.001049
S481N481SaAtaGt11AY.99.20.000092
S481N481DAatGat11AZ.10.000867
S481N481KaaTaaA11AZ.20.000821
S481N481KaaTaaA11B0.000128
S481N481HAatCat11B0.000128
S481N481HAatCat11B.10.000009
S481N481delAAT---11B.10.000009
S481N481del2aATa--11B.10.000009
S481N481QAaTCaG11B.10.000009
S481N481CAAtTGt11B.1.10.000018
S481N481DAatGat11B.1.10.000018
S481N481TaAtaCt11B.1.10.000018
S481N481NaaTaaC11B.1.10.000018
S481N481NaaTaaC11B.1.1.1170.009709
S481N481delAAT---11B.1.1.1390.022727
S481N481DAatGat11B.1.1.1530.001095
S481N481KaaTaaG11B.1.1.2080.012195
S481N481KaaTaaA11B.1.1.2140.000055
S481N481delAAT---11B.1.1.250.000569
S481N481delAAT---11B.1.1.3060.000438
S481N481KaaTaaG11B.1.1.3220.008772
S481N481DAatGat11B.1.1.3540.004386
S481N481NaaTaaC11B.1.1.3730.02381
S481N481SaAtaGt11B.1.1.4470.035714
S481N481DAatGat11B.1.1.460.004367
S481N481SaAtaGt11B.1.1.5230.001563
S481N481HAatCat11B.1.1.70.000001
S481N481KaaTaaG11B.1.1280.000635
S481N481NaaTaaC11B.1.1390.000733
S481N481SaAtaGt11B.1.1600.000031
S481N481NaaTaaC11B.1.177.120.000152
S481N481KaaTaaG11B.1.177.210.000076
S481N481SaAtaGt11B.1.177.230.003236
S481N481KaaTaaA11B.1.177.440.000519
S481N481DAatGat11B.1.20.000009
S481N481SaAtaGt11B.1.20.000009
S481N481TaAtaCt11B.1.20.000009
S481N481delAAT---11B.1.20.000009
S481N481KaaTaaA11B.1.20.000009
S481N481KaaTaaA11B.1.2230.002778
S481N481SaAtaGt11B.1.2340.000132
S481N481KaaTaaA11B.1.2360.002053
S481N481HAatCat11B.1.2370.004975
S481N481KaaTaaG11B.1.2410.000812
S481N481QAaTCaG11B.1.2580.000067
S481N481DAatGat11B.1.2580.000067
S481N481EAaTGaG11B.1.258.170.000104
S481N481KaaTaaG11B.1.258.170.000104
S481N481delAAT---11B.1.3510.00003
S481N481SaAtaGt11B.1.36.160.001425
S481N481DAatGat11B.1.36.290.000517
S481N481KaaTaaG11B.1.36.310.001751
S481N481IaAtaTt11B.1.3670.000792
S481N481KaaTaaA11B.1.4040.001302
S481N481IaAtaTt11B.1.4290.000024
S481N481DAatGat11B.1.4290.000024
S481N481IaAtaTt11B.1.4560.003268
S481N481NaaTaaC11B.1.4620.007246
S481N481NaaTaaC11B.1.4800.002488
S481N481delAAT---11B.1.5260.000024
S481N481NaaTaaC11B.1.5260.000024
S481N481KaaTaaA11B.1.5640.000426
S481N481NaaTaaC11B.1.5750.000303
S481N481TaAtaCt11B.1.5960.000087
S481N481NaaTaaC11B.1.5960.000087
S481N481NaaTaaC11B.1.617.10.000129
S481N481TaATaCA11B.1.617.20.000004
S481N481del2aATa--11B.1.617.20.000004
S481N481delAAT---11B.1.6200.000946
S481N481delAAT---11B.340.013699
S481N481YAatTat11C.40.01
S481N481SaAtaGt11D.20.000075
S481N481TaAtaCt11D.20.000075
S481N481KaaTaaA11P.10.000016
S481N481SaAtaGt11P.10.000016
S481N481delAAT---11P.1.10.000318
S481N481KaaTaaA11P.1.10.000318
S481N481NaaTaaC11P.1.160.000374
S481N481NaaTaaC11P.30.001595