CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 479

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S479P479SnonsynCctTct336333600.99910822997-22999
S479P479SnonsynCcTTcA336320.00059470722997-22999
S479P479SnonsynCcTTcC336310.00029735422997-22999
S479P479LnonsyncCtcTt9038960.99224822997-22999
S479P479LnonsynCCTTTA90330.0033222622997-22999
S479P479LnonsyncCTcTC90320.0022148422997-22999
S479P479LnonsyncCTcTA90320.0022148422997-22999
S479P479RnonsyncCtcGt3183170.99685522997-22999
S479P479RnonsyncCTcGG31810.0031446522997-22999
S479P479PsynccTccC2271060.4669622997-22999
S479P479PsynccTccG2271050.46255522997-22999
S479P479PsynccTccA227160.070484622997-22999
S479P479HnonsyncCtcAt1281270.99218822997-22999
S479P479HnonsyncCTcAC12810.007812522997-22999
S479P479deldelCCT---5050122997-22999
S479P479TnonsynCctAct28250.89285722997-22999
S479P479TnonsynCcTAcC2820.071428622997-22999
S479P479TnonsynCcTAcA2810.035714322997-22999
S479P479AnonsynCctGct77122997-22999
S479P479FnonsynCCtTTt650.83333322997-22999
S479P479FnonsynCCTTTC610.16666722997-22999
S479P479del1delCct-ct530.622997-22999
S479P479del1delccTcc-520.422997-22999
S479P479QnonsyncCTcAG210.522997-22999
S479P479QnonsyncCTcAA210.522997-22999
S479P479InonsynCCTATA11122997-22999
S479P479KnonsynCCTAAA11122997-22999

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S479P479SCctTct33603363All0.000643
S479P479SCcTTcA23363All0
S479P479SCcTTcC13363All0
S479P479LcCtcTt896903All0.000171
S479P479LCCTTTA3903All0.000001
S479P479LcCTcTC2903All0
S479P479LcCTcTA2903All0
S479P479SCctTct748748AY.40.001164
S479P479SCctTct538538AY.440.003275
S479P479RcCtcGt317318All0.000061
S479P479RcCTcGG1318All0
S479P479RcCtcGt285285AY.440.001735
S479P479SCctTct250250B.1.1.70.000224
S479P479PccTccC106227All0.00002
S479P479PccTccG105227All0.00002
S479P479PccTccA16227All0.000003
S479P479SCctTct193193AY.30.00192
S479P479SCctTct180180B.1.617.20.000678
S479P479LcCtcTt169169AY.40.000263
S479P479SCctTct164164AY.1030.001018
S479P479SCctTct137137B.1.10.002485
S479P479LcCtcTt131131AY.430.00058
S479P479HcCtcAt127128All0.000024
S479P479HcCTcAC1128All0
S479P479SCctTct109109B.1.20.00096
S479P479SCctTct8181B.1.1420.234783
S479P479SCctTct7474AY.430.000328
S479P479SCctTct6262AY.1190.002189
S479P479SCctTct5959AY.580.053539
S479P479LcCtcTt5858B.1.1.70.000052
S479P479LcCtcTt5858B.1.617.20.000218
S479P479SCctTct5555B.10.000504
S479P479delCCT---5050All0.00001
S479P479SCctTct4646AY.250.000277
S479P479LcCtcTt4343AY.1030.000267
S479P479SCctTct4343AY.420.00173
S479P479LcCtcTt4243AY.440.000256
S479P479LcCTcTC143AY.440.000006
S479P479LcCtcTt4343AY.470.001338
S479P479SCctTct4242AY.260.001189
S479P479LcCtcTt4242AY.30.000418
S479P479SCctTct4242B.1.1.3841
S479P479PccTccG2640AY.40.00004
S479P479PccTccC1440AY.40.000022
S479P479LcCtcTt3838AY.9.20.001396
S479P479SCctTct3131AY.4.20.000672
S479P479PccTccG3131AY.440.000189
S479P479HcCtcAt3030AY.40.000047
S479P479SCctTct2929AY.200.001127
S479P479SCctTct2929AY.290.000457
S479P479TCctAct2528All0.000005
S479P479TCcTAcC228All0
S479P479TCcTAcA128All0
S479P479LcCtcTt2727P.1.140.001291
S479P479SCctTct2525AY.390.000618
S479P479SCctTct2525AY.910.018262
S479P479SCctTct2424AY.230.001674
S479P479LcCtcTt2424AY.250.000144
S479P479PccTccC2224AY.430.000097
S479P479PccTccG224AY.430.000009
S479P479SCctTct2222AY.1020.000583
S479P479SCctTct2222C.390.415094
S479P479SCctTct2121B.1.4290.000494
S479P479HcCtcAt1920B.10.000174
S479P479HcCTcAC120B.10.000009
S479P479SCctTct1818AY.120.005689
S479P479HcCtcAt1818AY.260.00051
S479P479LcCtcTt1818AY.50.000372
S479P479PccTccG1414AY.4.50.001505
S479P479PccTccC914B.1.1.70.000008
S479P479PccTccG314B.1.1.70.000003
S479P479PccTccA214B.1.1.70.000002
S479P479PccTccC814B.1.617.20.00003
S479P479PccTccG414B.1.617.20.000015
S479P479PccTccA214B.1.617.20.000008
S479P479SCctTct1212AY.60.000494
S479P479SCctTct1212P.10.000189
S479P479SCctTct1111AY.98.10.000533
S479P479LcCtcTt1111B.10.000101
S479P479HcCtcAt1111B.1.1.70.00001
S479P479RcCtcGt1111B.1.617.20.000041
S479P479HcCtcAt1111B.1.617.20.000041
S479P479LcCtcTt1010AY.750.00056
S479P479SCctTct99A.2.50.004491
S479P479SCctTct99AY.1140.00208
S479P479SCctTct99AY.330.000601
S479P479delCCT---99AY.430.00004
S479P479SCctTct99AY.9.10.000754
S479P479PccTccC99P.10.000142
S479P479LcCtcTt88AY.10.003166
S479P479SCctTct88AY.1170.000676
S479P479LcCtcTt88AY.390.000198
S479P479SCctTct88AY.980.000632
S479P479ACctGct77All0.000001
S479P479LcCtcTt77AY.260.000198
S479P479SCctTct77AY.50.000145
S479P479LcCtcTt77AY.60.000288
S479P479PccTccC77B.1.2580.000466
S479P479LcCtcTt260.111111
S479P479LCCTTTA260.111111
S479P479LcCTcTA260.111111
S479P479FCCtTTt56All0.000001
S479P479FCCTTTC16All0
S479P479LcCtcTt66AY.270.000388
S479P479ACctGct66AY.40.000009
S479P479delCCT---66B.1.1.70.000005
S479P479PccTccC66B.1.1600.000187
S479P479SCctTct66B.1.1770.000079
S479P479del1Cct-ct35All0.000001
S479P479del1ccTcc-25All0
S479P479LcCtcTt55AY.1140.001156
S479P479SCctTct55AY.1180.000313
S479P479TCctAct55AY.250.00003
S479P479LcCtcTt55AY.330.000334
S479P479PccTccC55AY.390.000124
S479P479RcCtcGt55AY.40.000008
S479P479TCctAct55AY.40.000008
S479P479HcCtcAt55AY.430.000022
S479P479PccTccG55AY.90.000338
S479P479LcCtcTt55AY.990.005247
S479P479SCctTct55B.1.1.10.001633
S479P479SCctTct55B.1.1.1740.016892
S479P479LcCtcTt45B.1.20.000035
S479P479LcCTcTC15B.1.20.000009
S479P479SCctTct240.111111
S479P479SCcTTcA240.111111
S479P479LcCtcTt44AY.1000.000184
S479P479SCctTct44AY.130.000644
S479P479LcCtcTt44AY.200.000155
S479P479RcCtcGt44AY.270.000259
S479P479SCctTct44AY.3.10.000341
S479P479SCctTct44AY.320.00213
S479P479SCctTct44AY.340.000388
S479P479RcCtcGt34AY.430.000013
S479P479RcCTcGG14AY.430.000004
S479P479SCctTct44AY.46.40.000658
S479P479SCctTct44AY.5.30.00135
S479P479SCctTct44AY.540.000381
S479P479PccTccG44AY.80.002424
S479P479PccTccG34B.10.000027
S479P479PccTccC14B.10.000009
S479P479SCctTct44B.1.1.5190.000159
S479P479LcCtcTt44B.1.2210.000284
S479P479SCctTct44B.1.4160.005076
S479P479SCctTct44B.1.5960.000349
S479P479PccTccA230.111111
S479P479PccTccC130.055556
S479P479SCctTct33AY.1000.000138
S479P479HcCtcAt33AY.1020.00008
S479P479LcCtcTt33AY.1110.000549
S479P479SCctTct33AY.1160.00086
S479P479LcCtcTt33AY.1170.000254
S479P479LcCtcTt33AY.1180.000188
S479P479PccTccA33AY.1190.000106
S479P479SCctTct33AY.1200.000112
S479P479PccTccG23AY.1200.000074
S479P479PccTccC13AY.1200.000037
S479P479delCCT---33AY.250.000018
S479P479LcCtcTt33AY.290.000047
S479P479SCctTct33AY.360.000445
S479P479LcCtcTt33AY.39.10.000119
S479P479SCctTct33AY.4.40.001227
S479P479LcCtcTt33AY.4.50.000322
S479P479LcCtcTt33AY.450.000365
S479P479SCctTct33AY.450.000365
S479P479LcCtcTt33AY.460.000312
S479P479SCctTct33AY.470.000093
S479P479LcCtcTt33AY.530.000863
S479P479LcCtcTt33AY.910.002191
S479P479LcCtcTt33AY.920.000862
S479P479SCctTct33AY.940.001328
S479P479SCctTct33AY.99.20.000276
S479P479delCCT---33B.10.000027
S479P479SCctTct33B.1.1.500.002037
S479P479LcCtcTt33B.1.1.5190.000119
S479P479LcCtcTt33B.1.177.860.00055
S479P479PccTccC23B.1.20.000018
S479P479PccTccA13B.1.20.000009
S479P479SCctTct33B.1.3510.000089
S479P479delCCT---33B.1.617.20.000011
S479P479SCctTct33C.180.007772
S479P479SCctTct33Q.80.000495
S479P479del1Cct-ct220.111111
S479P479FCCtTTt220.111111
S479P479delCCT---220.111111
S479P479QcCTcAA12All0
S479P479QcCTcAG12All0
S479P479HcCtcAt22AY.1030.000012
S479P479SCctTct22AY.1070.000932
S479P479SCctTct22AY.1110.000366
S479P479delCCT---22AY.1130.000285
S479P479LcCtcTt22AY.1190.000071
S479P479LcCtcTt22AY.1200.000074
S479P479SCctTct22AY.120.10.000642
S479P479LcCtcTt22AY.230.000139
S479P479HcCtcAt22AY.250.000012
S479P479PccTccC22AY.270.000129
S479P479HcCtcAt22AY.30.00002
S479P479RcCtcGt22AY.30.00002
S479P479PccTccC22AY.30.00002
S479P479LcCtcTt22AY.340.000194
S479P479SCctTct22AY.380.000999
S479P479SCctTct22AY.39.10.000079
S479P479delCCT---22AY.40.000003
S479P479PccTccG12AY.4.20.000022
S479P479PccTccC12AY.4.20.000022
S479P479LcCtcTt22AY.4.2.10.000298
S479P479SCctTct22AY.4.50.000215
S479P479HcCtcAt22AY.450.000243
S479P479LcCtcTt22AY.46.50.000397
S479P479SCctTct22AY.550.001835
S479P479HcCtcAt22AY.550.001835
S479P479LcCtcTt22AY.580.001815
S479P479PccTccA12AY.580.000907
S479P479PccTccG12AY.580.000907
S479P479SCctTct22AY.610.00021
S479P479SCctTct22AY.650.001066
S479P479SCctTct22AY.680.000547
S479P479RcCtcGt22AY.730.001331
S479P479delCCT---22AY.750.000112
S479P479SCctTct22AY.750.000112
S479P479SCctTct22AY.75.10.000361
S479P479LcCtcTt22AY.820.002714
S479P479SCctTct22AY.840.000875
S479P479SCctTct22AY.9.20.000073
S479P479HcCtcAt22AY.9.20.000073
S479P479SCctTct22AY.920.000575
S479P479LcCtcTt22AY.930.000546
S479P479LcCtcTt12B.1.10.000018
S479P479FCCTTTC12B.1.10.000018
S479P479FCCtTTt12B.1.10.000018
S479P479LCCTTTA12B.1.10.000018
S479P479SCctTct22B.1.1.120.014925
S479P479SCctTct22B.1.1.1780.083333
S479P479SCctTct22B.1.1.3290.007692
S479P479SCctTct22B.1.1.3740.004751
S479P479SCctTct22B.1.1.4340.000697
S479P479PccTccC22B.1.1770.000026
S479P479TCctAct22B.1.177.600.000437
S479P479SCctTct22B.1.2210.000142
S479P479SCctTct22B.1.2580.000133
S479P479PccTccG22B.1.258.170.000208
S479P479LcCtcTt22B.1.36.10.002281
S479P479LcCtcTt22B.1.4270.000101
S479P479SCctTct22B.1.5250.000226
S479P479TCctAct22B.1.617.20.000008
S479P479delCCT---11A0.000387
S479P479SCctTct11A0.000387
S479P479SCctTct11A.20.000662
S479P479LcCtcTt11AD.20.000219
S479P479ICCTATA11All0
S479P479KCCTAAA11All0
S479P479RcCtcGt11AY.1000.000046
S479P479PccTccC11AY.1000.000046
S479P479delCCT---11AY.1020.000027
S479P479LcCtcTt11AY.1020.000027
S479P479LcCtcTt11AY.1060.000335
S479P479delCCT---11AY.1070.000466
S479P479delCCT---11AY.1080.001103
S479P479SCctTct11AY.1100.000113
S479P479LcCtcTt11AY.1100.000113
S479P479PccTccA11AY.1160.000287
S479P479PccTccC11AY.1170.000085
S479P479del1ccTcc-11AY.1170.000085
S479P479delCCT---11AY.1190.000035
S479P479RcCtcGt11AY.1190.000035
S479P479LcCtcTt11AY.120.000316
S479P479SCctTct11AY.1210.000135
S479P479LcCtcTt11AY.140.000088
S479P479PccTccC11AY.160.00038
S479P479SCctTct11AY.16.10.00047
S479P479PccTccG11AY.170.008197
S479P479LcCtcTt11AY.20.000356
S479P479TCctAct11AY.230.00007
S479P479HcCtcAt11AY.230.00007
S479P479LcCtcTt11AY.23.10.000417
S479P479TCctAct11AY.260.000028
S479P479PccTccC11AY.260.000028
S479P479SCctTct11AY.270.000065
S479P479LcCtcTt11AY.29.10.000221
S479P479TCctAct11AY.30.00001
S479P479delCCT---11AY.30.00001
S479P479HcCtcAt11AY.300.000396
S479P479HcCtcAt11AY.320.000532
S479P479LcCtcTt11AY.320.000532
S479P479SCctTct11AY.34.10.00051
S479P479SCctTct11AY.350.000233
S479P479LcCtcTt11AY.380.000499
S479P479SCctTct11AY.39.20.001541
S479P479HcCtcAt11AY.4.20.000022
S479P479LcCtcTt11AY.4.20.000022
S479P479SCctTct11AY.4.2.10.000149
S479P479SCctTct11AY.4.30.000842
S479P479SCctTct11AY.410.000294
S479P479LcCtcTt11AY.420.00004
S479P479PccTccA11AY.420.00004
S479P479HcCtcAt11AY.420.00004
S479P479del1Cct-ct11AY.430.000004
S479P479TCcTAcC11AY.440.000006
S479P479FCCtTTt11AY.440.000006
S479P479HcCtcAt11AY.440.000006
S479P479SCctTct11AY.460.000104
S479P479LcCtcTt11AY.46.20.000635
S479P479LcCtcTt11AY.46.40.000165
S479P479SCctTct11AY.46.60.000072
S479P479TCctAct11AY.470.000031
S479P479SCctTct11AY.480.000465
S479P479RcCtcGt11AY.50.000021
S479P479LcCtcTt11AY.5.10.003759
S479P479HcCtcAt11AY.5.30.000337
S479P479SCctTct11AY.530.000288
S479P479LcCtcTt11AY.540.000095
S479P479TCctAct11AY.550.000917
S479P479HcCtcAt11AY.60.000041
S479P479LcCtcTt11AY.620.000436
S479P479SCctTct11AY.630.000387
S479P479SCctTct11AY.640.000595
S479P479LcCtcTt11AY.640.000595
S479P479delCCT---11AY.670.000464
S479P479LcCtcTt11AY.680.000274
S479P479TCctAct11AY.690.000187
S479P479SCctTct11AY.690.000187
S479P479LcCtcTt11AY.690.000187
S479P479RcCtcGt11AY.7.10.000113
S479P479LcCtcTt11AY.7.10.000113
S479P479HcCtcAt11AY.7.10.000113
S479P479SCctTct11AY.7.20.000559
S479P479SCctTct11AY.710.000475
S479P479LcCtcTt11AY.75.10.00018
S479P479LcCtcTt11AY.840.000437
S479P479delCCT---11AY.840.000437
S479P479SCctTct11AY.850.000427
S479P479LcCtcTt11AY.860.00083
S479P479HcCtcAt11AY.860.00083
S479P479LcCtcTt11AY.90.000068
S479P479SCctTct11AY.90.000068
S479P479ICCTATA11AY.9.20.000037
S479P479LcCtcTt11AY.950.000761
S479P479LcCtcTt11AY.980.000079
S479P479HcCtcAt11AY.98.10.000048
S479P479delCCT---11AY.990.001049
S479P479LcCtcTt11AY.99.20.000092
S479P479LcCtcTt11AZ.30.00152
S479P479delCCT---11B0.000128
S479P479QcCTcAG11B.10.000009
S479P479ACctGct11B.10.000009
S479P479HcCtcAt11B.1.10.000018
S479P479PccTccC11B.1.10.000018
S479P479delCCT---11B.1.1.1390.022727
S479P479PccTccC11B.1.1.1720.018182
S479P479LcCtcTt11B.1.1.2220.000204
S479P479HcCtcAt11B.1.1.2300.009174
S479P479SCctTct11B.1.1.2580.003257
S479P479LcCtcTt11B.1.1.280.000311
S479P479LcCtcTt11B.1.1.2940.001266
S479P479delCCT---11B.1.1.3060.000438
S479P479SCctTct11B.1.1.3150.008475
S479P479SCctTct11B.1.1.330.000421
S479P479LcCtcTt11B.1.1.3720.000689
S479P479RcCtcGt11B.1.1.390.00051
S479P479QcCTcAA11B.1.1.5070.008696
S479P479HcCtcAt11B.1.1.5070.008696
S479P479PccTccA11B.1.1.5070.008696
S479P479TCcTAcA11B.1.1.5190.00004
S479P479LcCtcTt11B.1.1.610.008772
S479P479TCctAct11B.1.1.70.000001
S479P479del1ccTcc-11B.1.1.70.000001
S479P479LcCtcTt11B.1.1120.005181
S479P479SCctTct11B.1.130.002375
S479P479TCctAct11B.1.1600.000031
S479P479PccTccA11B.1.177.330.001645
S479P479PccTccC11B.1.177.350.000691
S479P479LcCtcTt11B.1.177.430.001477
S479P479PccTccC11B.1.177.730.000566
S479P479LcCtcTt11B.1.177.820.000477
S479P479delCCT---11B.1.20.000009
S479P479TCctAct11B.1.20.000009
S479P479SCctTct11B.1.2060.000816
S479P479PccTccG11B.1.2210.000071
S479P479PccTccG11B.1.2340.000132
S479P479SCctTct11B.1.2400.000216
S479P479SCctTct11B.1.2430.00007
S479P479LcCtcTt11B.1.2580.000067
S479P479LcCtcTt11B.1.3110.000275
S479P479delCCT---11B.1.3510.00003
S479P479LcCtcTt11B.1.3510.00003
S479P479TCctAct11B.1.3510.00003
S479P479PccTccC11B.1.3510.00003
S479P479LcCtcTt11B.1.351.20.000303
S479P479HcCtcAt11B.1.36.170.000494
S479P479LcCtcTt11B.1.36.180.00042
S479P479FCCtTTt11B.1.36.20.010753
S479P479LcCtcTt11B.1.36.20.010753
S479P479SCctTct11B.1.36.20.010753
S479P479LcCtcTt11B.1.36.290.000517
S479P479PccTccG11B.1.36.360.000602
S479P479TCctAct11B.1.3770.004566
S479P479LcCtcTt11B.1.3800.006623
S479P479SCctTct11B.1.3960.000706
S479P479PccTccG11B.1.4090.000781
S479P479SCctTct11B.1.4260.001009
S479P479PccTccC11B.1.4290.000024
S479P479SCctTct11B.1.4560.003268
S479P479SCctTct11B.1.5080.025641
S479P479delCCT---11B.1.5260.000024
S479P479LcCtcTt11B.1.5260.000024
S479P479SCctTct11B.1.5260.000024
S479P479SCctTct11B.1.5650.00081
S479P479SCctTct11B.1.5670.003333
S479P479HcCtcAt11B.1.5750.000303
S479P479SCctTct11B.1.5870.001898
S479P479PccTccC11B.1.5960.000087
S479P479LcCtcTt11B.1.5960.000087
S479P479SCctTct11B.1.5970.00463
S479P479PccTccG11B.1.5990.00365
S479P479SCctTct11B.1.6090.000479
S479P479KCCTAAA11B.1.617.20.000004
S479P479delCCT---11B.1.6200.000946
S479P479PccTccC11B.1.6230.000536
S479P479LcCtcTt11B.1.6370.000073
S479P479delCCT---11B.340.013699
S479P479SCctTct11C.1.20.004255
S479P479PccTccA11C.180.002591
S479P479SCctTct11C.350.000774
S479P479SCctTct11D.20.000075
S479P479PccTccC11D.20.000075
S479P479HcCtcAt11D.20.000075
S479P479LcCtcTt11P.10.000016
S479P479SCctTct11P.1.10.000318
S479P479delCCT---11P.1.10.000318
S479P479HcCtcAt11P.1.140.000048
S479P479SCctTct11P.1.140.000048
S479P479SCctTct11P.1.150.000232
S479P479TCcTAcC11P.1.170.000162
S479P479SCcTTcC11P.1.170.000162
S479P479PccTccC11P.1.170.000162
S479P479LcCtcTt11Q.10.000126
S479P479SCctTct11Q.10.000126
S479P479SCctTct11Q.70.001111
S479P479PccTccG11Q.80.000165