CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 478 | T478K | nonsyn | aCa | aAa | 2709174 | 2709160 | 0.999995 | 22994-22996 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 478 | T478K | aCa | aAa | 2709160 | 2709174 | All | 0.518159 |
S | 478 | T478K | aCa | aAa | 629671 | 629672 | AY.4 | 0.980034 |
S | 478 | T478K | aCa | aAa | 261265 | 261268 | B.1.617.2 | 0.983771 |
S | 478 | T478K | aCa | aAa | 219959 | 219961 | AY.43 | 0.97452 |
S | 478 | T478K | aCa | aAa | 162604 | 162605 | AY.25 | 0.978034 |
S | 478 | T478K | aCa | aAa | 158226 | 158231 | AY.44 | 0.963084 |
S | 478 | T478K | aCa | aAa | 156508 | 156509 | AY.103 | 0.971767 |
S | 478 | T478K | aCa | aAa | 97658 | 97658 | AY.3 | 0.971344 |
S | 478 | T478K | aCa | aAa | 62971 | 62971 | AY.29 | 0.99328 |
S | 478 | T478K | aCa | aAa | 47220 | 47220 | AY.5 | 0.975056 |
S | 478 | T478K | aCa | aAa | 45697 | 45697 | AY.4.2 | 0.991108 |
S | 478 | T478K | aCa | aAa | 37265 | 37265 | AY.102 | 0.988042 |
S | 478 | T478K | aCa | aAa | 36896 | 36896 | AY.39 | 0.911755 |
S | 478 | T478K | aCa | aAa | 34232 | 34232 | AY.26 | 0.969114 |
S | 478 | T478K | aCa | aAa | 31320 | 31320 | AY.47 | 0.974214 |
S | 478 | T478K | aCa | aAa | 27574 | 27574 | AY.119 | 0.973589 |
S | 478 | T478K | aCa | aAa | 26375 | 26375 | AY.9.2 | 0.968743 |
S | 478 | T478K | aCa | aAa | 26335 | 26335 | AY.120 | 0.979105 |
S | 478 | T478K | aCa | aAa | 24649 | 24649 | AY.20 | 0.957987 |
S | 478 | T478K | aCa | aAa | 24446 | 24446 | AY.39.1 | 0.968389 |
S | 478 | T478K | aCa | aAa | 24086 | 24086 | AY.42 | 0.968983 |
S | 478 | T478K | aCa | aAa | 23833 | 23833 | B.1.1.519 | 0.94643 |
S | 478 | T478K | aCa | aAa | 23706 | 23706 | AY.6 | 0.974994 |
S | 478 | T478K | aCa | aAa | 20576 | 20576 | AY.100 | 0.946632 |
S | 478 | T478K | aCa | aAa | 20098 | 20098 | AY.98.1 | 0.973363 |
S | 478 | T478K | aCa | aAa | 16941 | 16941 | AY.75 | 0.949076 |
S | 478 | T478K | aCa | aAa | 15617 | 15617 | AY.118 | 0.978386 |
S | 478 | T478K | aCa | aAa | 15287 | 15287 | AY.27 | 0.989386 |
S | 478 | T478K | aCa | aAa | 14588 | 14588 | AY.33 | 0.974157 |
S | 478 | T478K | aCa | aAa | 14312 | 14312 | AY.9 | 0.967419 |
S | 478 | T478K | aCa | aAa | 14085 | 14085 | AY.23 | 0.982423 |
S | 478 | T478K | aCa | aAa | 13587 | 13587 | AY.46.6 | 0.981082 |
S | 478 | T478K | aCa | aAa | 12142 | 12142 | AY.98 | 0.959159 |
S | 478 | T478K | aCa | aAa | 11804 | 11804 | AY.9.1 | 0.988279 |
S | 478 | T478K | aCa | aAa | 11297 | 11297 | AY.117 | 0.954784 |
S | 478 | T478K | aCa | aAa | 11270 | 11270 | AY.3.1 | 0.960866 |
S | 478 | T478K | aCa | aAa | 11090 | 11090 | AY.14 | 0.976061 |
S | 478 | T478K | aCa | aAa | 10334 | 10334 | AY.99.2 | 0.952355 |
S | 478 | T478K | aCa | aAa | 10125 | 10125 | AY.54 | 0.965389 |
S | 478 | T478K | aCa | aAa | 10037 | 10037 | AY.34 | 0.973238 |
S | 478 | T478K | aCa | aAa | 9276 | 9276 | AY.61 | 0.97192 |
S | 478 | T478K | aCa | aAa | 9222 | 9222 | AY.4.5 | 0.991293 |
S | 478 | T478K | aCa | aAa | 8924 | 8924 | AY.46 | 0.928809 |
S | 478 | T478K | aCa | aAa | 8793 | 8793 | AY.110 | 0.990872 |
S | 478 | T478K | aCa | aAa | 8777 | 8777 | AY.7.1 | 0.989181 |
S | 478 | T478K | aCa | aAa | 8571 | 8571 | AY.74 | 0.991211 |
S | 478 | T478K | aCa | aAa | 7200 | 7200 | AY.121 | 0.97429 |
S | 478 | T478K | aCa | aAa | 7091 | 7091 | AY.45 | 0.862862 |
S | 478 | T478K | aCa | aAa | 6835 | 6835 | AY.113 | 0.973231 |
S | 478 | T478K | aCa | aAa | 6624 | 6624 | AY.4.2.1 | 0.986889 |
S | 478 | T478K | aCa | aAa | 6593 | 6593 | AY.36 | 0.977175 |
S | 478 | T478K | aCa | aAa | 6042 | 6042 | AY.13 | 0.972634 |
S | 478 | T478K | aCa | aAa | 5955 | 5955 | AY.46.4 | 0.979602 |
S | 478 | T478K | aCa | aAa | 5351 | 5351 | AY.69 | 0.99888 |
S | 478 | T478K | aCa | aAa | 5327 | 5327 | AY.111 | 0.975641 |
S | 478 | T478K | aCa | aAa | 5217 | 5217 | AY.75.1 | 0.940678 |
S | 478 | T478K | aCa | aAa | 4974 | 4974 | AY.7 | 0.974912 |
S | 478 | T478K | aCa | aAa | 4953 | 4953 | AY.46.5 | 0.982738 |
S | 478 | T478K | aCa | aAa | 4719 | 4719 | AY.70 | 0.983945 |
S | 478 | T478K | aCa | aAa | 4508 | 4508 | AY.29.1 | 0.994046 |
S | 478 | T478K | aCa | aAa | 4205 | 4205 | AY.114 | 0.971805 |
S | 478 | T478K | aCa | aAa | 4204 | 4204 | AY.35 | 0.979725 |
S | 478 | T478K | aCa | aAa | 3659 | 3659 | AY.93 | 0.999181 |
S | 478 | T478K | aCa | aAa | 3608 | 3608 | AY.68 | 0.987681 |
S | 478 | T478K | aCa | aAa | 3505 | 3505 | AY.5.4 | 0.96984 |
S | 478 | T478K | aCa | aAa | 3418 | 3418 | AY.116 | 0.980212 |
S | 478 | T478K | aCa | aAa | 3394 | 3394 | AY.53 | 0.975848 |
S | 478 | T478K | aCa | aAa | 3362 | 3362 | AY.41 | 0.988242 |
S | 478 | T478K | aCa | aAa | 3258 | 3258 | AY.92 | 0.935938 |
S | 478 | T478K | aCa | aAa | 3149 | 3149 | AY.116.1 | 0.980691 |
S | 478 | T478K | aCa | aAa | 3096 | 3096 | AY.37 | 0.978508 |
S | 478 | T478K | aCa | aAa | 3053 | 3053 | AY.120.1 | 0.980096 |
S | 478 | T478K | aCa | aAa | 2931 | 2931 | AY.12 | 0.926359 |
S | 478 | T478K | aCa | aAa | 2914 | 2914 | AY.106 | 0.975887 |
S | 478 | T478K | aCa | aAa | 2875 | 2875 | AY.5.3 | 0.969973 |
S | 478 | T478K | aCa | aAa | 2576 | 2576 | AY.63 | 0.996518 |
S | 478 | T478K | aCa | aAa | 2539 | 2539 | AY.2 | 0.904202 |
S | 478 | T478K | aCa | aAa | 2534 | 2534 | AY.16 | 0.962035 |
S | 478 | T478K | aCa | aAa | 2444 | 2444 | AY.30 | 0.967155 |
S | 478 | T478K | aCa | aAa | 2420 | 2420 | AY.4.4 | 0.99018 |
S | 478 | T478K | aCa | aAa | 2394 | 2394 | AY.23.1 | 0.999165 |
S | 478 | T478K | aCa | aAa | 2367 | 2367 | AY.1 | 0.936684 |
S | 478 | T478K | aCa | aAa | 2301 | 2301 | AY.85 | 0.982913 |
S | 478 | T478K | aCa | aAa | 2268 | 2268 | AY.24 | 0.977586 |
S | 478 | T478K | aCa | aAa | 2220 | 2220 | AY.94 | 0.982736 |
S | 478 | T478K | aCa | aAa | 2190 | 2190 | AY.62 | 0.954248 |
S | 478 | T478K | aCa | aAa | 2163 | 2163 | AY.84 | 0.946194 |
S | 478 | T478K | aCa | aAa | 2078 | 2078 | AY.107 | 0.968313 |
S | 478 | T478K | aCa | aAa | 2065 | 2065 | AY.67 | 0.958682 |
S | 478 | T478K | aCa | aAa | 2043 | 2043 | AY.48 | 0.950233 |
S | 478 | T478K | aCa | aAa | 2016 | 2016 | AY.71 | 0.95772 |
S | 478 | T478K | aCa | aAa | 1961 | 1961 | AY.120.2.1 | 0.97708 |
S | 478 | T478K | aCa | aAa | 1958 | 1958 | AY.101 | 0.960275 |
S | 478 | T478K | aCa | aAa | 1872 | 1872 | AY.38 | 0.934598 |
S | 478 | T478K | aCa | aAa | 1865 | 1865 | AY.34.1 | 0.951045 |
S | 478 | T478K | aCa | aAa | 1827 | 1827 | AY.59 | 0.967691 |
S | 478 | T478K | aCa | aAa | 1823 | 1823 | AY.16.1 | 0.856673 |
S | 478 | T478K | aCa | aAa | 1792 | 1792 | AY.32 | 0.954207 |
S | 478 | T478K | aCa | aAa | 1756 | 1756 | AY.7.2 | 0.982103 |
S | 478 | T478K | aCa | aAa | 1726 | 1726 | AY.10 | 0.914679 |
S | 478 | T478K | aCa | aAa | 1632 | 1632 | AY.8 | 0.989091 |
S | 478 | T478K | aCa | aAa | 1627 | 1627 | AY.64 | 0.968452 |
S | 478 | T478K | aCa | aAa | 1608 | 1608 | AY.65 | 0.857143 |
S | 478 | T478K | aCa | aAa | 1534 | 1534 | AY.46.2 | 0.974587 |
S | 478 | T478K | aCa | aAa | 1510 | 1510 | AY.105 | 0.971061 |
S | 478 | T478K | aCa | aAa | 1504 | 1504 | AY.57 | 0.986877 |
S | 478 | T478K | aCa | aAa | 1480 | 1480 | AY.73 | 0.984697 |
S | 478 | T478K | aCa | aAa | 1428 | 1428 | AY.90 | 0.977413 |
S | 478 | T478K | aCa | aAa | 1376 | 1376 | AY.39.1.1 | 0.997101 |
S | 478 | T478K | aCa | aAa | 1334 | 1334 | AY.4.1 | 0.983776 |
S | 478 | T478K | aCa | aAa | 1305 | 1305 | B.1 | 0.011953 |
S | 478 | T478K | aCa | aAa | 1302 | 1302 | AY.109 | 0.963018 |
S | 478 | T478K | aCa | aAa | 1301 | 1301 | AY.91 | 0.950329 |
S | 478 | T478K | aCa | aAa | 1275 | 1275 | AY.95 | 0.97032 |
S | 478 | T478K | aCa | aAa | 1236 | 1236 | AY.50 | 0.98801 |
S | 478 | T478K | aCa | aAa | 1187 | 1187 | AY.86 | 0.985062 |
S | 478 | T478K | aCa | aAa | 1170 | 1170 | AY.4.3 | 0.984848 |
S | 478 | T478K | aCa | aAa | 1165 | 1165 | AY.87 | 0.970025 |
S | 478 | T478K | aCa | aAa | 1105 | 1105 | AY.88 | 0.977011 |
S | 478 | T478K | aCa | aAa | 1064 | 1064 | AY.55 | 0.976147 |
S | 478 | T478K | aCa | aAa | 1063 | 1063 | AY.51 | 0.966364 |
S | 478 | T478K | aCa | aAa | 1054 | 1054 | AY.58 | 0.956443 |
S | 478 | T478K | aCa | aAa | 1040 | 1040 | AY.60 | 0.97561 |
S | 478 | T478K | aCa | aAa | 1022 | 1022 | AY.46.3 | 0.954248 |
S | 478 | T478K | aCa | aAa | 1001 | 1001 | AY.52 | 0.815147 |
S | 478 | T478K | aCa | aAa | 953 | 953 | AY.46.1 | 0.978439 |
S | 478 | T478K | aCa | aAa | 944 | 944 | AY.40 | 0.910318 |
S | 478 | T478K | aCa | aAa | 918 | 918 | AY.66 | 0.981818 |
S | 478 | T478K | aCa | aAa | 903 | 903 | AY.99 | 0.947534 |
S | 478 | T478K | aCa | aAa | 872 | 872 | AY.108 | 0.961411 |
S | 478 | T478K | aCa | aAa | 872 | 872 | AY.80 | 0.984199 |
S | 478 | T478K | aCa | aAa | 855 | 855 | AY.77 | 0.963923 |
S | 478 | T478K | aCa | aAa | 821 | 821 | AY.79 | 0.993947 |
S | 478 | T478K | aCa | aAa | 803 | 803 | AY.19 | 0.915621 |
S | 478 | T478K | aCa | aAa | 738 | 738 | AY.11 | 0.987952 |
S | 478 | T478K | aCa | aAa | 725 | 725 | AY.72 | 0.986395 |
S | 478 | T478K | aCa | aAa | 721 | 721 | AY.120.2 | 0.926735 |
S | 478 | T478K | aCa | aAa | 709 | 709 | AY.82 | 0.962008 |
S | 478 | T478K | aCa | aAa | 646 | 646 | AY.39.2 | 0.995378 |
S | 478 | T478K | aCa | aAa | 635 | 635 | AY.78 | 0.978428 |
S | 478 | T478K | aCa | aAa | 604 | 604 | AY.99.1 | 0.937888 |
S | 478 | T478K | aCa | aAa | 598 | 598 | AY.56 | 0.959872 |
S | 478 | T478K | aCa | aAa | 564 | 564 | AY.97 | 0.959184 |
S | 478 | T478K | aCa | aAa | 563 | 563 | AY.83 | 0.97069 |
S | 478 | T478K | aCa | aAa | 519 | 519 | AY.28 | 0.981096 |
S | 478 | T478K | aCa | aAa | 517 | 517 | AY.21 | 0.981025 |
S | 478 | T478K | aCa | aAa | 506 | 506 | AY.9.2.1 | 1 |
S | 478 | T478K | aCa | aAa | 492 | 492 | AY.104 | 0.97619 |
S | 478 | T478K | aCa | aAa | 491 | 491 | AY.81 | 0.978088 |
S | 478 | T478K | aCa | aAa | 472 | 472 | AY.22 | 0.987448 |
S | 478 | T478K | aCa | aAa | 469 | 469 | AY.96 | 0.973029 |
S | 478 | T478K | aCa | aAa | 449 | 449 | AY.15 | 0.997778 |
S | 478 | T478K | aCa | aAa | 400 | 400 | AY.5.2 | 0.985222 |
S | 478 | T478K | aCa | aAa | 361 | 362 | B.1.1 | 0.006549 |
S | 478 | T478K | aCa | aAa | 291 | 291 | AY.49 | 0.929712 |
S | 478 | T478K | aCa | aAa | 264 | 264 | AY.5.1 | 0.992481 |
S | 478 | T478K | aCa | aAa | 264 | 264 | B.1.36.1 | 0.301026 |
S | 478 | T478K | aCa | aAa | 244 | 244 | AY.91.1 | 0.99187 |
S | 478 | T478K | aCa | aAa | 202 | 202 | AY.76 | 0.975845 |
S | 478 | T478K | aCa | aAa | 198 | 198 | AY.89 | 0.970588 |
S | 478 | T478K | aCa | aAa | 177 | 177 | AY.115 | 0.921875 |
S | 478 | T478K | aCa | aAa | 121 | 121 | AY.17 | 0.991803 |
S | 478 | T478K | aCa | aAa | 105 | 105 | B.1.1.7 | 0.000094 |
S | 478 | T478K | aCa | aAa | 104 | 104 | B.1.214.3 | 0.742857 |
S | 478 | T478K | aCa | aAa | 99 | 99 | AY.18 | 1 |
S | 478 | T478K | aCa | aAa | 72 | 72 | B | 0.009202 |
S | 478 | T478K | aCa | aAa | 68 | 68 | B.1.629 | 0.906667 |
S | 478 | T478K | aCa | aAa | 67 | 67 | B.1.2 | 0.00059 |
S | 478 | T478K | aCa | aAa | 59 | 59 | B.1.351 | 0.001754 |
S | 478 | T478K | aCa | aAa | 59 | 59 | B.1.596 | 0.005141 |
S | 478 | T478K | aCa | aAa | 57 | 57 | C.1.2 | 0.242553 |
S | 478 | T478K | aCa | aAa | 53 | 53 | AY.31 | 0.981481 |
S | 478 | T478K | aCa | aAa | 46 | 46 | B.1.243.2 | 0.666667 |
S | 478 | T478K | aCa | aAa | 45 | 45 | B.1.639 | 0.978261 |
S | 478 | T478K | aCa | aAa | 43 | 43 | B.1.234 | 0.005674 |
S | 478 | T478K | aCa | aAa | 33 | 33 | B.1.617.1 | 0.004256 |
S | 478 | T478K | aCa | aAa | 27 | 27 | P.1 | 0.000425 |
S | 478 | T478K | aCa | aAa | 26 | 26 | B.1.1.222 | 0.005304 |
S | 478 | T478K | aCa | aAa | 25 | 25 | B.1.1.161 | 0.088339 |
S | 478 | T478K | aCa | aAa | 23 | 23 | B.1.427 | 0.001161 |
S | 478 | T478K | aCa | aAa | 22 | 22 | B.1.1.306 | 0.009645 |
S | 478 | T478K | aCa | aAa | 17 | 17 | B.1.214 | 0.062271 |
S | 478 | T478K | aCa | aAa | 17 | 17 | B.1.36 | 0.00248 |
S | 478 | T478K | aCa | aAa | 17 | 17 | B.1.633 | 0.708333 |
S | 478 | T478K | aCa | aAa | 15 | 15 | B.1.214.2 | 0.008993 |
S | 478 | T478K | aCa | aAa | 15 | 15 | B.1.623 | 0.008047 |
S | 478 | T478K | aCa | aAa | 15 | 15 | P.1.12 | 0.00726 |
S | 478 | T478K | aCa | aAa | 15 | 15 | P.1.17 | 0.002426 |
S | 478 | T478K | aCa | aAa | 14 | 14 | B.1.1.28 | 0.004357 |
S | 478 | T478K | aCa | aAa | 11 | 11 | B.1.1.523 | 0.017188 |
S | 478 | T478K | aCa | aAa | 11 | 11 | B.1.628 | 0.003876 |
S | 478 | T478K | aCa | aAa | 10 | 10 | B.1.177.73 | 0.005663 |
S | 478 | T478K | aCa | aAa | 10 | 10 | B.1.621 | 0.000885 |
S | 478 | T478K | aCa | aAa | 9 | 9 | B.1.1.317 | 0.003705 |
S | 478 | T478K | aCa | aAa | 8 | 8 | B.1.1.316 | 0.007401 |
S | 478 | T478K | aCa | aAa | 8 | 8 | B.1.177 | 0.000105 |
S | 478 | T478K | aCa | aAa | 8 | 8 | C.36.3.1 | 0.021739 |
S | 478 | T478K | aCa | aAa | 8 | 8 | Y.1 | 0.102564 |
S | 478 | T478K | aCa | aAa | 7 | 7 | B.1.1.220 | 0.013011 |
S | 478 | T478K | aCa | aAa | 7 | 7 | B.1.1.294 | 0.008861 |
S | 478 | T478K | aCa | aAa | 7 | 7 | B.1.486 | 0.777778 |
S | 478 | T478K | aCa | aAa | 7 | 7 | P.1.1 | 0.002224 |
S | 478 | T478K | aCa | aAa | 6 | 6 | B.1.1.485 | 0.1 |
S | 478 | T478K | aCa | aAa | 6 | 6 | B.1.1.526 | 0.021277 |
S | 478 | T478K | aCa | aAa | 6 | 6 | B.1.221 | 0.000426 |
S | 478 | T478K | aCa | aAa | 6 | 6 | B.1.462 | 0.043478 |
S | 478 | T478K | aCa | aAa | 6 | 6 | B.1.576 | 0.00544 |
S | 478 | T478K | aCa | aAa | 5 | 5 | B.1.160 | 0.000156 |
S | 478 | T478K | aCa | aAa | 5 | 5 | B.1.375 | 0.004098 |
S | 478 | T478K | aCa | aAa | 5 | 5 | B.1.429 | 0.000118 |
S | 478 | T478K | aCa | aAa | 5 | 5 | B.1.466.2 | 0.001956 |
S | 478 | T478K | aCa | aAa | 4 | 4 | A | 0.001548 |
S | 478 | T478K | aCa | aAa | 4 | 4 | B.1.1.171 | 0.014706 |
S | 478 | T478K | aCa | aAa | 4 | 4 | B.1.1.288 | 0.007663 |
S | 478 | T478K | aCa | aAa | 4 | 4 | B.1.474 | 0.007605 |
S | 478 | T478K | aCa | aAa | 4 | 4 | B.1.580 | 0.01626 |
S | 478 | T478K | aCa | aAa | 4 | 4 | P.1.7 | 0.001277 |
S | 478 | T478K | aCa | aAa | 3 | 3 | 0.166667 | |
S | 478 | T478K | aCa | aAa | 3 | 3 | B.1.1.1 | 0.00098 |
S | 478 | T478K | aCa | aAa | 3 | 3 | B.1.1.158 | 0.036585 |
S | 478 | T478K | aCa | aAa | 3 | 3 | B.1.1.372 | 0.002066 |
S | 478 | T478K | aCa | aAa | 3 | 3 | B.1.1.432 | 0.003797 |
S | 478 | T478K | aCa | aAa | 3 | 3 | B.1.210 | 0.006397 |
S | 478 | T478K | aCa | aAa | 3 | 3 | B.1.214.1 | 0.06 |
S | 478 | T478K | aCa | aAa | 3 | 3 | B.1.369 | 0.000856 |
S | 478 | T478K | aCa | aAa | 3 | 3 | B.1.530 | 0.021429 |
S | 478 | T478K | aCa | aAa | 3 | 3 | P.1.13 | 0.002695 |
S | 478 | T478K | aCa | aAa | 3 | 3 | P.1.15 | 0.000697 |
S | 478 | T478K | aCa | aAa | 2 | 2 | AU.3 | 0.004219 |
S | 478 | T478K | aCa | aAa | 2 | 2 | B.1.1.121 | 0.004854 |
S | 478 | T478K | aCa | aAa | 2 | 2 | B.1.1.160 | 0.047619 |
S | 478 | T478K | aCa | aAa | 2 | 2 | B.1.1.198 | 0.002937 |
S | 478 | T478K | aCa | aAa | 2 | 2 | B.1.1.236 | 0.013793 |
S | 478 | T478K | aCa | aAa | 2 | 2 | B.1.1.265 | 0.006309 |
S | 478 | T478K | aCa | aAa | 2 | 2 | B.1.1.83 | 0.00542 |
S | 478 | T478K | aCa | aAa | 2 | 2 | B.1.351.3 | 0.001753 |
S | 478 | T478K | aCa | aAa | 2 | 2 | B.1.36.10 | 0.009569 |
S | 478 | T478K | aCa | aAa | 2 | 2 | B.1.418 | 0.031746 |
S | 478 | T478K | aCa | aAa | 2 | 2 | B.1.492 | 0.014085 |
S | 478 | T478K | aCa | aAa | 2 | 2 | B.1.525 | 0.000226 |
S | 478 | T478K | aCa | aAa | 2 | 2 | B.1.554 | 0.008811 |
S | 478 | T478K | aCa | aAa | 2 | 2 | B.1.604 | 0.034483 |
S | 478 | T478K | aCa | aAa | 2 | 2 | B.1.619 | 0.001742 |
S | 478 | T478K | aCa | aAa | 2 | 2 | B.1.631 | 0.006734 |
S | 478 | T478K | aCa | aAa | 2 | 2 | B.1.638 | 0.105263 |
S | 478 | T478K | aCa | aAa | 2 | 2 | B.55 | 0.0059 |
S | 478 | T478K | aCa | aAa | 2 | 2 | C.37 | 0.000232 |
S | 478 | T478K | aCa | aAa | 2 | 2 | Q.1 | 0.000253 |
S | 478 | T478K | aCa | aAa | 1 | 1 | A.1 | 0.000282 |
S | 478 | T478K | aCa | aAa | 1 | 1 | A.2.5 | 0.000499 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.1.10 | 0.001115 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.1.174 | 0.003378 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.1.175 | 0.076923 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.1.216 | 0.00089 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.1.231 | 0.003096 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.1.261 | 0.008621 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.1.263 | 0.001558 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.1.269 | 0.001353 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.1.277 | 0.000759 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.1.301 | 0.001179 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.1.318 | 0.000302 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.1.322 | 0.008772 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.1.326 | 0.001761 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.1.33 | 0.000421 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.1.344 | 0.010753 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.1.37 | 0.000193 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.1.387 | 0.058824 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.1.448 | 0.002033 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.1.507 | 0.008696 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.1.525 | 0.005464 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.1.528 | 0.004808 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.1.54 | 0.003021 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.1.99 | 0.02381 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.111 | 0.001175 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.118 | 0.006711 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.126 | 0.001276 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.153 | 0.018868 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.157 | 0.002985 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.179 | 0.003759 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.206 | 0.000816 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.218 | 0.005155 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.240 | 0.000216 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.241 | 0.000812 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.243 | 0.00007 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.258.11 | 0.000396 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.260 | 0.003344 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.279 | 0.000514 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.335 | 0.010309 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.340 | 0.004292 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.349 | 0.000715 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.351.2 | 0.000303 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.351.5 | 0.0006 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.355 | 0.011111 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.36.29 | 0.000517 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.36.8 | 0.001 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.367 | 0.000792 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.378 | 0.006849 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.390 | 0.010638 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.432 | 0.011236 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.433 | 0.003195 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.436 | 0.001029 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.469 | 0.00361 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.485 | 0.014925 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.497 | 0.000315 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.499 | 0.00105 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.524 | 0.001406 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.526 | 0.000024 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.546 | 0.003704 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.564 | 0.000426 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.593 | 0.01087 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.609 | 0.000479 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.627 | 0.00202 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.630 | 0.005236 |
S | 478 | T478K | aCa | aAa | 1 | 1 | B.1.632 | 0.006711 |
S | 478 | T478K | aCa | aAa | 1 | 1 | P.1.10.1 | 0.00813 |
S | 478 | T478K | aCa | aAa | 1 | 1 | P.1.17.1 | 0.000875 |
S | 478 | T478K | aCa | aAa | 1 | 1 | P.1.8 | 0.004785 |
S | 478 | T478K | aCa | aAa | 1 | 1 | P.3 | 0.001595 |
S | 478 | T478K | aCa | aAa | 1 | 1 | P.5 | 0.013699 |
S | 478 | T478K | aCa | aAa | 1 | 1 | P.7 | 0.004367 |
S | 478 | T478K | aCa | aAa | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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