CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 477 | S477N | nonsyn | aGc | aAc | 72060 | 71987 | 0.998987 | 22991-22993 | |
S | 477 | S477N | nonsyn | aGC | aAT | 72060 | 73 | 0.00101304 | 22991-22993 | |
S | 477 | S477S | syn | agC | agT | 18490 | 18487 | 0.999838 | 22991-22993 | |
S | 477 | S477S | syn | AGc | TCc | 18490 | 3 | 0.00016225 | 22991-22993 | |
S | 477 | S477I | nonsyn | aGc | aTc | 6579 | 6567 | 0.998176 | 22991-22993 | |
S | 477 | S477I | nonsyn | aGC | aTT | 6579 | 12 | 0.00182399 | 22991-22993 | |
S | 477 | S477R | nonsyn | agC | agA | 1502 | 792 | 0.527297 | 22991-22993 | |
S | 477 | S477R | nonsyn | agC | agG | 1502 | 708 | 0.471372 | 22991-22993 | |
S | 477 | S477R | nonsyn | Agc | Cgc | 1502 | 2 | 0.00133156 | 22991-22993 | |
S | 477 | S477G | nonsyn | Agc | Ggc | 976 | 971 | 0.994877 | 22991-22993 | |
S | 477 | S477G | nonsyn | AgC | GgT | 976 | 3 | 0.00307377 | 22991-22993 | |
S | 477 | S477G | nonsyn | AgC | GgG | 976 | 1 | 0.00102459 | 22991-22993 | |
S | 477 | S477G | nonsyn | AgC | GgA | 976 | 1 | 0.00102459 | 22991-22993 | |
S | 477 | S477T | nonsyn | aGc | aCc | 98 | 95 | 0.969388 | 22991-22993 | |
S | 477 | S477T | nonsyn | aGC | aCT | 98 | 3 | 0.0306122 | 22991-22993 | |
S | 477 | S477del | del | AGC | --- | 49 | 49 | 1 | 22991-22993 | |
S | 477 | S477del1 | del | agC | ag- | 8 | 3 | 0.375 | 22991-22993 | |
S | 477 | S477del1 | del | aGc | a-c | 8 | 2 | 0.25 | 22991-22993 | |
S | 477 | S477del1 | del | AGC | -AT | 8 | 1 | 0.125 | 22991-22993 | |
S | 477 | S477del1 | del | AGc | -Ac | 8 | 1 | 0.125 | 22991-22993 | |
S | 477 | S477del1 | del | Agc | -gc | 8 | 1 | 0.125 | 22991-22993 | |
S | 477 | S477K | nonsyn | aGC | aAA | 7 | 5 | 0.714286 | 22991-22993 | |
S | 477 | S477K | nonsyn | aGC | aAG | 7 | 2 | 0.285714 | 22991-22993 | |
S | 477 | S477V | nonsyn | AGc | GTc | 6 | 3 | 0.5 | 22991-22993 | |
S | 477 | S477V | nonsyn | AGC | GTT | 6 | 2 | 0.333333 | 22991-22993 | |
S | 477 | S477V | nonsyn | AGC | GTA | 6 | 1 | 0.166667 | 22991-22993 | |
S | 477 | S477C | nonsyn | Agc | Tgc | 5 | 5 | 1 | 22991-22993 | |
S | 477 | S477D | nonsyn | AGc | GAc | 4 | 4 | 1 | 22991-22993 | |
S | 477 | S477del2 | del | AGc | --c | 1 | 1 | 1 | 22991-22993 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 477 | S477N | aGc | aAc | 71987 | 72060 | All | 0.013768 |
S | 477 | S477N | aGC | aAT | 73 | 72060 | All | 0.000014 |
S | 477 | S477N | aGc | aAc | 28764 | 28794 | B.1.160 | 0.897081 |
S | 477 | S477N | aGC | aAT | 30 | 28794 | B.1.160 | 0.000936 |
S | 477 | S477S | agC | agT | 18487 | 18490 | All | 0.003536 |
S | 477 | S477S | AGc | TCc | 3 | 18490 | All | 0.000001 |
S | 477 | S477N | aGc | aAc | 16174 | 16190 | B.1.526 | 0.380162 |
S | 477 | S477N | aGC | aAT | 16 | 16190 | B.1.526 | 0.000376 |
S | 477 | S477N | aGc | aAc | 10680 | 10683 | D.2 | 0.801441 |
S | 477 | S477N | aGC | aAT | 3 | 10683 | D.2 | 0.000225 |
S | 477 | S477S | agC | agT | 8110 | 8110 | B.1.617.2 | 0.030538 |
S | 477 | S477I | aGc | aTc | 6567 | 6579 | All | 0.001256 |
S | 477 | S477I | aGC | aTT | 12 | 6579 | All | 0.000002 |
S | 477 | S477S | agC | agT | 5513 | 5513 | AY.43 | 0.024425 |
S | 477 | S477I | aGc | aTc | 2729 | 2729 | AY.41 | 0.802175 |
S | 477 | S477N | aGc | aAc | 1615 | 1615 | B.1.1.317 | 0.664883 |
S | 477 | S477R | agC | agA | 792 | 1502 | All | 0.000151 |
S | 477 | S477R | agC | agG | 708 | 1502 | All | 0.000135 |
S | 477 | S477R | Agc | Cgc | 2 | 1502 | All | 0 |
S | 477 | S477N | aGc | aAc | 1377 | 1377 | B.1 | 0.012613 |
S | 477 | S477N | aGc | aAc | 1028 | 1029 | B.1.620 | 0.972564 |
S | 477 | S477N | aGC | aAT | 1 | 1029 | B.1.620 | 0.000946 |
S | 477 | S477N | aGc | aAc | 993 | 1006 | B.1.160.16 | 0.922862 |
S | 477 | S477N | aGC | aAT | 13 | 1006 | B.1.160.16 | 0.012082 |
S | 477 | S477G | Agc | Ggc | 971 | 976 | All | 0.000186 |
S | 477 | S477G | AgC | GgT | 3 | 976 | All | 0.000001 |
S | 477 | S477G | AgC | GgG | 1 | 976 | All | 0 |
S | 477 | S477G | AgC | GgA | 1 | 976 | All | 0 |
S | 477 | S477N | aGc | aAc | 881 | 881 | B.1.438.1 | 0.094497 |
S | 477 | S477N | aGc | aAc | 767 | 767 | B.1.160.8 | 0.988402 |
S | 477 | S477I | aGc | aTc | 738 | 739 | AY.4 | 0.001149 |
S | 477 | S477I | aGC | aTT | 1 | 739 | AY.4 | 0.000002 |
S | 477 | S477I | aGc | aTc | 716 | 716 | AY.39 | 0.017693 |
S | 477 | S477N | aGc | aAc | 704 | 706 | B.1.404 | 0.916667 |
S | 477 | S477N | aGC | aAT | 2 | 706 | B.1.404 | 0.002604 |
S | 477 | S477R | agC | agG | 689 | 689 | B.1.1.433 | 0.981481 |
S | 477 | S477N | aGc | aAc | 585 | 585 | B.1.160.17 | 0.994898 |
S | 477 | S477S | agC | agT | 514 | 514 | AY.39 | 0.012702 |
S | 477 | S477N | aGc | aAc | 477 | 477 | B.1.160.7 | 0.991684 |
S | 477 | S477N | aGc | aAc | 455 | 455 | B.1.127 | 1 |
S | 477 | S477R | agC | agA | 434 | 435 | B.1.1.7 | 0.000389 |
S | 477 | S477R | agC | agG | 1 | 435 | B.1.1.7 | 0.000001 |
S | 477 | S477N | aGc | aAc | 432 | 432 | B.1.160.14 | 0.915254 |
S | 477 | S477S | agC | agT | 431 | 431 | AY.4 | 0.000671 |
S | 477 | S477S | agC | agT | 427 | 427 | B.1.1.7 | 0.000382 |
S | 477 | S477I | aGc | aTc | 414 | 414 | B.1.1.7 | 0.000371 |
S | 477 | S477N | aGc | aAc | 406 | 406 | B.1.1 | 0.007365 |
S | 477 | S477G | Agc | Ggc | 403 | 403 | AY.25 | 0.002424 |
S | 477 | S477N | aGc | aAc | 398 | 398 | B.1.160.26 | 0.96368 |
S | 477 | S477S | agC | agT | 353 | 353 | AY.44 | 0.002149 |
S | 477 | S477N | aGc | aAc | 338 | 338 | B.1.160.28 | 0.988304 |
S | 477 | S477N | aGc | aAc | 322 | 322 | B.1.1.37 | 0.062102 |
S | 477 | S477N | aGc | aAc | 322 | 322 | C.36.3.1 | 0.875 |
S | 477 | S477S | agC | agT | 233 | 233 | AY.25 | 0.001401 |
S | 477 | S477G | Agc | Ggc | 232 | 232 | B.1.429 | 0.005459 |
S | 477 | S477S | agC | agT | 228 | 228 | AY.102 | 0.006045 |
S | 477 | S477N | aGc | aAc | 228 | 228 | B.1.160.29 | 0.962025 |
S | 477 | S477N | aGc | aAc | 223 | 223 | B.1.160.24 | 0.986726 |
S | 477 | S477I | aGc | aTc | 219 | 221 | AY.43 | 0.00097 |
S | 477 | S477I | aGC | aTT | 2 | 221 | AY.43 | 0.000009 |
S | 477 | S477N | aGc | aAc | 218 | 218 | B.1.160.33 | 0.964602 |
S | 477 | S477N | aGc | aAc | 204 | 204 | B.1.160.23 | 0.985507 |
S | 477 | S477N | aGc | aAc | 198 | 198 | B.1.1.222 | 0.040392 |
S | 477 | S477N | aGc | aAc | 192 | 192 | B.1.160.30 | 0.571429 |
S | 477 | S477N | aGc | aAc | 187 | 187 | B.1.160.15 | 0.925743 |
S | 477 | S477N | aGc | aAc | 178 | 178 | B.1.160.32 | 0.763948 |
S | 477 | S477N | aGc | aAc | 160 | 160 | B.1.160.11 | 0.914286 |
S | 477 | S477I | aGc | aTc | 147 | 150 | B.1.617.2 | 0.000554 |
S | 477 | S477I | aGC | aTT | 3 | 150 | B.1.617.2 | 0.000011 |
S | 477 | S477N | aGc | aAc | 142 | 142 | B.1.160.12 | 0.910256 |
S | 477 | S477I | aGc | aTc | 140 | 140 | B.1.427 | 0.00707 |
S | 477 | S477N | aGc | aAc | 136 | 136 | B.1.1.413 | 0.937931 |
S | 477 | S477N | aGc | aAc | 136 | 136 | B.1.160.22 | 0.918919 |
S | 477 | S477N | aGc | aAc | 133 | 133 | B.1.160.18 | 0.970803 |
S | 477 | S477I | aGc | aTc | 132 | 132 | B.1.1.311 | 0.047278 |
S | 477 | S477N | aGc | aAc | 129 | 129 | B.1.632 | 0.865772 |
S | 477 | S477N | aGc | aAc | 128 | 128 | B.1.160.9 | 0.920863 |
S | 477 | S477N | aGc | aAc | 126 | 127 | B.1.2 | 0.001109 |
S | 477 | S477N | aGC | aAT | 1 | 127 | B.1.2 | 0.000009 |
S | 477 | S477S | agC | agT | 125 | 125 | AY.103 | 0.000776 |
S | 477 | S477S | agC | agT | 125 | 125 | AY.119 | 0.004414 |
S | 477 | S477N | aGc | aAc | 124 | 124 | B.1.160.31 | 1 |
S | 477 | S477N | aGc | aAc | 121 | 121 | AB.1 | 0.991803 |
S | 477 | S477S | agC | agT | 121 | 121 | B.1.541 | 0.535398 |
S | 477 | S477S | agC | agT | 116 | 116 | AY.72 | 0.157823 |
S | 477 | S477N | aGc | aAc | 116 | 116 | B.1.160.10 | 0.935484 |
S | 477 | S477S | agC | agT | 114 | 114 | B.1.1.429 | 0.525346 |
S | 477 | S477S | agC | agT | 106 | 106 | B.1.2 | 0.000933 |
S | 477 | S477S | agC | agT | 104 | 104 | AY.12 | 0.03287 |
S | 477 | S477T | aGc | aCc | 95 | 98 | All | 0.000018 |
S | 477 | S477T | aGC | aCT | 3 | 98 | All | 0.000001 |
S | 477 | S477N | aGc | aAc | 96 | 96 | A.2.5.3 | 0.989691 |
S | 477 | S477I | aGc | aTc | 95 | 95 | AY.85 | 0.040581 |
S | 477 | S477R | agC | agA | 88 | 88 | B.1.375 | 0.072131 |
S | 477 | S477N | aGc | aAc | 87 | 87 | B.1.160.25 | 0.966667 |
S | 477 | S477N | aGc | aAc | 87 | 87 | B.1.177 | 0.001146 |
S | 477 | S477I | aGc | aTc | 85 | 85 | AY.25 | 0.000511 |
S | 477 | S477S | agC | agT | 85 | 85 | B.1.1 | 0.001542 |
S | 477 | S477I | aGc | aTc | 84 | 84 | AY.103 | 0.000522 |
S | 477 | S477S | agC | agT | 83 | 83 | AY.46 | 0.008639 |
S | 477 | S477S | agC | agT | 79 | 79 | AY.20 | 0.00307 |
S | 477 | S477N | aGc | aAc | 77 | 77 | AY.4 | 0.00012 |
S | 477 | S477N | aGc | aAc | 74 | 74 | B.1.160.20 | 0.660714 |
S | 477 | S477N | aGc | aAc | 72 | 72 | B.1.1.375 | 0.857143 |
S | 477 | S477S | agC | agT | 69 | 69 | AY.3 | 0.000686 |
S | 477 | S477R | agC | agA | 69 | 69 | B.1.2 | 0.000608 |
S | 477 | S477I | aGc | aTc | 65 | 66 | AY.44 | 0.000396 |
S | 477 | S477I | aGC | aTT | 1 | 66 | AY.44 | 0.000006 |
S | 477 | S477S | agC | agT | 65 | 65 | AY.42 | 0.002615 |
S | 477 | S477N | aGc | aAc | 65 | 65 | B.1.1.7 | 0.000058 |
S | 477 | S477N | aGc | aAc | 64 | 64 | B.1.160.27 | 0.969697 |
S | 477 | S477S | agC | agT | 62 | 62 | AY.5.3 | 0.020918 |
S | 477 | S477R | agC | agA | 59 | 59 | AY.95 | 0.044901 |
S | 477 | S477N | aGc | aAc | 56 | 56 | B.1.635 | 0.982456 |
S | 477 | S477N | aGc | aAc | 53 | 53 | B.1.36 | 0.007733 |
S | 477 | S477N | aGc | aAc | 53 | 53 | B.1.36.8 | 0.053 |
S | 477 | S477S | agC | agT | 51 | 51 | AY.32 | 0.027157 |
S | 477 | S477N | aGc | aAc | 49 | 50 | B.1.617.2 | 0.000185 |
S | 477 | S477N | aGC | aAT | 1 | 50 | B.1.617.2 | 0.000004 |
S | 477 | S477del | AGC | --- | 49 | 49 | All | 0.000009 |
S | 477 | S477G | Agc | Ggc | 49 | 49 | AY.4 | 0.000076 |
S | 477 | S477N | aGc | aAc | 49 | 49 | B.1.160.21 | 1 |
S | 477 | S477S | agC | agT | 47 | 47 | AY.116 | 0.013479 |
S | 477 | S477I | aGc | aTc | 47 | 47 | AY.29 | 0.000741 |
S | 477 | S477I | aGc | aTc | 46 | 46 | AY.102 | 0.00122 |
S | 477 | S477S | agC | agT | 46 | 46 | AY.33 | 0.003072 |
S | 477 | S477N | aGc | aAc | 46 | 46 | B.1.221 | 0.003268 |
S | 477 | S477S | agC | agT | 45 | 45 | AY.120 | 0.001673 |
S | 477 | S477N | aGc | aAc | 44 | 44 | AY.25 | 0.000265 |
S | 477 | S477N | aGc | aAc | 44 | 44 | B.1.438.4 | 0.93617 |
S | 477 | S477I | aGc | aTc | 43 | 43 | AY.98 | 0.003397 |
S | 477 | S477I | aGc | aTc | 43 | 43 | B.1.177.21 | 0.003288 |
S | 477 | S477N | aGc | aAc | 42 | 42 | AY.102 | 0.001114 |
S | 477 | S477S | agC | agT | 42 | 42 | B.1.429 | 0.000988 |
S | 477 | S477S | agC | agT | 41 | 41 | AY.5.4 | 0.011345 |
S | 477 | S477S | agC | agT | 40 | 40 | AY.120.1 | 0.012841 |
S | 477 | S477I | aGc | aTc | 39 | 39 | AY.5.3 | 0.013158 |
S | 477 | S477N | aGc | aAc | 38 | 38 | AY.3 | 0.000378 |
S | 477 | S477S | agC | agT | 38 | 38 | AY.98 | 0.003002 |
S | 477 | S477G | Agc | Ggc | 37 | 38 | B.1.1.7 | 0.000033 |
S | 477 | S477G | AgC | GgA | 1 | 38 | B.1.1.7 | 0.000001 |
S | 477 | S477S | agC | agT | 37 | 37 | AY.111 | 0.006777 |
S | 477 | S477S | agC | agT | 36 | 36 | AY.46.6 | 0.002599 |
S | 477 | S477N | aGc | aAc | 36 | 36 | B.1.160.13 | 1 |
S | 477 | S477I | aGc | aTc | 35 | 35 | AY.110 | 0.003944 |
S | 477 | S477I | aGc | aTc | 34 | 34 | AY.47 | 0.001058 |
S | 477 | S477N | aGc | aAc | 34 | 34 | B.1.509 | 0.029437 |
S | 477 | S477G | Agc | Ggc | 33 | 33 | AY.9 | 0.002231 |
S | 477 | S477N | aGc | aAc | 33 | 33 | AY.98.1 | 0.001598 |
S | 477 | S477N | aGc | aAc | 33 | 33 | B.1.243 | 0.002296 |
S | 477 | S477S | agC | agT | 32 | 32 | AY.23 | 0.002232 |
S | 477 | S477N | aGc | aAc | 31 | 32 | B.1.177.44 | 0.016087 |
S | 477 | S477N | aGC | aAT | 1 | 32 | B.1.177.44 | 0.000519 |
S | 477 | S477N | aGc | aAc | 32 | 32 | B.1.416 | 0.040609 |
S | 477 | S477N | aGc | aAc | 31 | 31 | B.1.1.1 | 0.010127 |
S | 477 | S477I | aGc | aTc | 30 | 30 | AY.9.2 | 0.001102 |
S | 477 | S477S | agC | agT | 27 | 30 | P.1 | 0.000425 |
S | 477 | S477S | AGc | TCc | 3 | 30 | P.1 | 0.000047 |
S | 477 | S477I | aGc | aTc | 29 | 29 | B.1.177.60 | 0.006335 |
S | 477 | S477S | agC | agT | 28 | 28 | AY.100 | 0.001288 |
S | 477 | S477I | aGc | aTc | 28 | 28 | B.1 | 0.000256 |
S | 477 | S477S | agC | agT | 28 | 28 | B.1.625 | 0.065882 |
S | 477 | S477N | aGc | aAc | 27 | 27 | P.2 | 0.005039 |
S | 477 | S477I | aGc | aTc | 26 | 26 | AY.75.1 | 0.004688 |
S | 477 | S477N | aGc | aAc | 26 | 26 | B.1.160.19 | 0.928571 |
S | 477 | S477N | aGc | aAc | 25 | 25 | B.1.1.445 | 0.925926 |
S | 477 | S477G | Agc | Ggc | 25 | 25 | B.1.617.2 | 0.000094 |
S | 477 | S477G | Agc | Ggc | 24 | 24 | AY.20 | 0.000933 |
S | 477 | S477S | agC | agT | 24 | 24 | AY.5 | 0.000496 |
S | 477 | S477N | aGc | aAc | 24 | 24 | B.1.177.73 | 0.01359 |
S | 477 | S477I | aGc | aTc | 23 | 23 | AY.5 | 0.000475 |
S | 477 | S477S | agC | agT | 22 | 22 | AY.117 | 0.001859 |
S | 477 | S477I | aGc | aTc | 22 | 22 | AY.20 | 0.000855 |
S | 477 | S477I | aGc | aTc | 22 | 22 | AY.4.4 | 0.009002 |
S | 477 | S477N | aGc | aAc | 18 | 22 | AY.43 | 0.00008 |
S | 477 | S477N | aGC | aAT | 4 | 22 | AY.43 | 0.000018 |
S | 477 | S477S | agC | agT | 22 | 22 | AY.47 | 0.000684 |
S | 477 | S477N | aGc | aAc | 22 | 22 | B | 0.002812 |
S | 477 | S477R | agC | agA | 15 | 22 | B.1.1 | 0.000272 |
S | 477 | S477R | agC | agG | 7 | 22 | B.1.1 | 0.000127 |
S | 477 | S477S | agC | agT | 22 | 22 | B.1.177 | 0.00029 |
S | 477 | S477N | aGc | aAc | 22 | 22 | B.1.36.29 | 0.011381 |
S | 477 | S477N | aGc | aAc | 22 | 22 | B.1.438 | 0.143791 |
S | 477 | S477N | aGc | aAc | 22 | 22 | C.36 | 0.020036 |
S | 477 | S477S | agC | agT | 21 | 21 | AY.106 | 0.007033 |
S | 477 | S477S | agC | agT | 21 | 21 | B.1 | 0.000192 |
S | 477 | S477N | aGc | aAc | 21 | 21 | B.1.260 | 0.070234 |
S | 477 | S477I | aGc | aTc | 20 | 20 | AY.3 | 0.000199 |
S | 477 | S477I | aGc | aTc | 20 | 20 | AY.36 | 0.002964 |
S | 477 | S477I | aGc | aTc | 20 | 20 | AY.42 | 0.000805 |
S | 477 | S477N | aGc | aAc | 20 | 20 | B.1.258.11 | 0.007927 |
S | 477 | S477S | agC | agT | 20 | 20 | P.2 | 0.003733 |
S | 477 | S477S | agC | agT | 19 | 19 | AY.118 | 0.00119 |
S | 477 | S477N | aGc | aAc | 19 | 19 | B.1.1.39 | 0.009684 |
S | 477 | S477T | aGc | aCc | 19 | 19 | B.1.1.7 | 0.000017 |
S | 477 | S477S | agC | agT | 19 | 19 | C.37 | 0.002205 |
S | 477 | S477R | agC | agA | 16 | 18 | AY.4 | 0.000025 |
S | 477 | S477R | agC | agG | 2 | 18 | AY.4 | 0.000003 |
S | 477 | S477G | Agc | Ggc | 17 | 18 | AY.43 | 0.000075 |
S | 477 | S477G | AgC | GgT | 1 | 18 | AY.43 | 0.000004 |
S | 477 | S477I | aGc | aTc | 18 | 18 | AY.75 | 0.001008 |
S | 477 | S477S | agC | agT | 18 | 18 | AY.84 | 0.007874 |
S | 477 | S477I | aGc | aTc | 18 | 18 | B.1.429 | 0.000424 |
S | 477 | S477N | aGc | aAc | 17 | 17 | AY.103 | 0.000106 |
S | 477 | S477S | agC | agT | 17 | 17 | AY.41 | 0.004997 |
S | 477 | S477S | agC | agT | 17 | 17 | AY.92 | 0.004884 |
S | 477 | S477I | aGc | aTc | 17 | 17 | AY.99.2 | 0.001567 |
S | 477 | S477N | aGc | aAc | 16 | 16 | B.1.227 | 0.761905 |
S | 477 | S477I | aGc | aTc | 15 | 15 | AY.119 | 0.00053 |
S | 477 | S477S | agC | agT | 15 | 15 | AY.121 | 0.00203 |
S | 477 | S477S | agC | agT | 15 | 15 | AY.45 | 0.001825 |
S | 477 | S477S | agC | agT | 15 | 15 | AY.77 | 0.016911 |
S | 477 | S477N | aGc | aAc | 15 | 15 | B.1.1.348 | 0.011943 |
S | 477 | S477I | aGc | aTc | 15 | 15 | B.1.177.81 | 0.00284 |
S | 477 | S477S | agC | agT | 15 | 15 | B.1.177.86 | 0.002752 |
S | 477 | S477I | aGc | aTc | 15 | 15 | B.1.2 | 0.000132 |
S | 477 | S477R | agC | agA | 14 | 15 | P.1 | 0.000221 |
S | 477 | S477R | agC | agG | 1 | 15 | P.1 | 0.000016 |
S | 477 | S477G | Agc | Ggc | 14 | 14 | AY.103 | 0.000087 |
S | 477 | S477S | agC | agT | 14 | 14 | AY.113 | 0.001993 |
S | 477 | S477I | aGc | aTc | 14 | 14 | AY.26 | 0.000396 |
S | 477 | S477S | agC | agT | 14 | 14 | AY.74 | 0.001619 |
S | 477 | S477I | aGc | aTc | 13 | 13 | AY.4.2 | 0.000282 |
S | 477 | S477N | aGc | aAc | 13 | 13 | B.1.1.159 | 0.060748 |
S | 477 | S477S | agC | agT | 13 | 13 | B.1.427 | 0.000656 |
S | 477 | S477N | aGc | aAc | 13 | 13 | B.1.596 | 0.001133 |
S | 477 | S477N | aGc | aAc | 13 | 13 | C.1.1 | 1 |
S | 477 | S477N | aGc | aAc | 13 | 13 | C.37 | 0.001509 |
S | 477 | S477I | aGc | aTc | 12 | 12 | AY.23 | 0.000837 |
S | 477 | S477S | agC | agT | 12 | 12 | AY.26 | 0.00034 |
S | 477 | S477T | aGc | aCc | 12 | 12 | AY.4 | 0.000019 |
S | 477 | S477N | aGc | aAc | 12 | 12 | B.1.1.25 | 0.006822 |
S | 477 | S477I | aGc | aTc | 12 | 12 | B.1.177 | 0.000158 |
S | 477 | S477I | aGc | aTc | 12 | 12 | B.1.577 | 0.008247 |
S | 477 | S477N | aGc | aAc | 11 | 11 | AY.4.5 | 0.001182 |
S | 477 | S477G | Agc | Ggc | 10 | 11 | AY.44 | 0.000061 |
S | 477 | S477G | AgC | GgG | 1 | 11 | AY.44 | 0.000006 |
S | 477 | S477S | agC | agT | 11 | 11 | AY.46.1 | 0.011294 |
S | 477 | S477S | agC | agT | 11 | 11 | AY.75 | 0.000616 |
S | 477 | S477S | agC | agT | 11 | 11 | AY.99 | 0.011542 |
S | 477 | S477S | agC | agT | 11 | 11 | B.1.1.214 | 0.00061 |
S | 477 | S477N | aGc | aAc | 11 | 11 | B.1.177.43 | 0.016248 |
S | 477 | S477N | aGc | aAc | 11 | 11 | B.1.179 | 0.041353 |
S | 477 | S477N | aGc | aAc | 11 | 11 | B.1.595 | 0.002871 |
S | 477 | S477N | aGc | aAc | 10 | 10 | AE.8 | 0.00489 |
S | 477 | S477G | Agc | Ggc | 10 | 10 | AY.29 | 0.000158 |
S | 477 | S477del | AGC | --- | 10 | 10 | AY.43 | 0.000044 |
S | 477 | S477N | aGc | aAc | 10 | 10 | AY.44 | 0.000061 |
S | 477 | S477S | agC | agT | 10 | 10 | AY.48 | 0.004651 |
S | 477 | S477S | agC | agT | 10 | 10 | AY.59 | 0.005297 |
S | 477 | S477N | aGc | aAc | 10 | 10 | AY.9.2 | 0.000367 |
S | 477 | S477S | agC | agT | 10 | 10 | AY.9.2 | 0.000367 |
S | 477 | S477I | aGc | aTc | 10 | 10 | AY.98.1 | 0.000484 |
S | 477 | S477S | agC | agT | 10 | 10 | M.1 | 0.232558 |
S | 477 | S477I | aGc | aTc | 10 | 10 | P.1.17 | 0.001618 |
S | 477 | S477S | agC | agT | 9 | 9 | AY.34.1 | 0.004589 |
S | 477 | S477R | agC | agA | 8 | 9 | AY.43 | 0.000035 |
S | 477 | S477R | agC | agG | 1 | 9 | AY.43 | 0.000004 |
S | 477 | S477N | aGc | aAc | 9 | 9 | B.1.177.31 | 0.103448 |
S | 477 | S477S | agC | agT | 9 | 9 | B.1.210 | 0.01919 |
S | 477 | S477N | aGc | aAc | 9 | 9 | B.1.229 | 0.087379 |
S | 477 | S477I | aGc | aTc | 9 | 9 | B.1.243 | 0.000626 |
S | 477 | S477S | agC | agT | 9 | 9 | B.1.351 | 0.000268 |
S | 477 | S477N | aGc | aAc | 9 | 9 | B.1.561 | 0.003573 |
S | 477 | S477del1 | agC | ag- | 3 | 8 | All | 0.000001 |
S | 477 | S477del1 | aGc | a-c | 2 | 8 | All | 0 |
S | 477 | S477del1 | AGc | -Ac | 1 | 8 | All | 0 |
S | 477 | S477del1 | Agc | -gc | 1 | 8 | All | 0 |
S | 477 | S477del1 | AGC | -AT | 1 | 8 | All | 0 |
S | 477 | S477S | agC | agT | 8 | 8 | AY.27 | 0.000518 |
S | 477 | S477S | agC | agT | 8 | 8 | AY.29 | 0.000126 |
S | 477 | S477I | aGc | aTc | 8 | 8 | AY.33 | 0.000534 |
S | 477 | S477I | aGc | aTc | 8 | 8 | AY.34 | 0.000776 |
S | 477 | S477S | agC | agT | 8 | 8 | AY.36 | 0.001186 |
S | 477 | S477T | aGc | aCc | 8 | 8 | AY.39 | 0.000198 |
S | 477 | S477S | agC | agT | 8 | 8 | AY.4.2 | 0.000174 |
S | 477 | S477S | agC | agT | 8 | 8 | AY.64 | 0.004762 |
S | 477 | S477S | agC | agT | 8 | 8 | AY.98.1 | 0.000387 |
S | 477 | S477N | aGc | aAc | 8 | 8 | B.1.1.28 | 0.00249 |
S | 477 | S477S | agC | agT | 8 | 8 | B.1.221 | 0.000568 |
S | 477 | S477N | aGc | aAc | 8 | 8 | B.1.429 | 0.000188 |
S | 477 | S477N | aGc | aAc | 8 | 8 | B.1.499 | 0.008403 |
S | 477 | S477I | aGc | aTc | 8 | 8 | B.1.525 | 0.000905 |
S | 477 | S477N | aGc | aAc | 8 | 8 | B.1.623 | 0.004292 |
S | 477 | S477S | agC | agT | 8 | 8 | C.35 | 0.006192 |
S | 477 | S477K | aGC | aAA | 5 | 7 | All | 0.000001 |
S | 477 | S477K | aGC | aAG | 2 | 7 | All | 0 |
S | 477 | S477S | agC | agT | 7 | 7 | AY.114 | 0.001618 |
S | 477 | S477S | agC | agT | 7 | 7 | AY.39.1 | 0.000277 |
S | 477 | S477I | aGc | aTc | 7 | 7 | AY.4.5 | 0.000752 |
S | 477 | S477S | agC | agT | 7 | 7 | AY.6 | 0.000288 |
S | 477 | S477I | aGc | aTc | 7 | 7 | AY.61 | 0.000733 |
S | 477 | S477S | agC | agT | 7 | 7 | AY.95 | 0.005327 |
S | 477 | S477G | Agc | Ggc | 7 | 7 | B.1 | 0.000064 |
S | 477 | S477N | aGc | aAc | 7 | 7 | B.1.1.161 | 0.024735 |
S | 477 | S477N | aGc | aAc | 7 | 7 | B.1.1.189 | 0.01059 |
S | 477 | S477R | agC | agA | 7 | 7 | B.1.1.28 | 0.002179 |
S | 477 | S477S | agC | agT | 7 | 7 | B.1.258 | 0.000466 |
S | 477 | S477I | aGc | aTc | 7 | 7 | B.1.351.5 | 0.004197 |
S | 477 | S477I | aGc | aTc | 7 | 7 | B.1.617.1 | 0.000903 |
S | 477 | S477V | AGc | GTc | 3 | 6 | All | 0.000001 |
S | 477 | S477V | AGC | GTT | 2 | 6 | All | 0 |
S | 477 | S477V | AGC | GTA | 1 | 6 | All | 0 |
S | 477 | S477I | aGc | aTc | 6 | 6 | AY.116 | 0.001721 |
S | 477 | S477I | aGc | aTc | 6 | 6 | AY.120 | 0.000223 |
S | 477 | S477S | agC | agT | 6 | 6 | AY.3.1 | 0.000512 |
S | 477 | S477G | Agc | Ggc | 6 | 6 | AY.39.1 | 0.000238 |
S | 477 | S477G | Agc | Ggc | 6 | 6 | AY.39.1.1 | 0.004348 |
S | 477 | S477G | Agc | Ggc | 6 | 6 | AY.47 | 0.000187 |
S | 477 | S477S | agC | agT | 6 | 6 | AY.55 | 0.005505 |
S | 477 | S477S | agC | agT | 6 | 6 | AY.67 | 0.002786 |
S | 477 | S477I | aGc | aTc | 6 | 6 | AY.74 | 0.000694 |
S | 477 | S477N | aGc | aAc | 6 | 6 | AY.75 | 0.000336 |
S | 477 | S477I | aGc | aTc | 6 | 6 | AY.9 | 0.000406 |
S | 477 | S477R | agC | agA | 4 | 6 | B.1 | 0.000037 |
S | 477 | S477R | agC | agG | 2 | 6 | B.1 | 0.000018 |
S | 477 | S477N | aGc | aAc | 6 | 6 | B.1.1.312 | 0.011472 |
S | 477 | S477del | AGC | --- | 6 | 6 | B.1.1.7 | 0.000005 |
S | 477 | S477N | aGc | aAc | 5 | 6 | B.1.258 | 0.000333 |
S | 477 | S477N | aGC | aAT | 1 | 6 | B.1.258 | 0.000067 |
S | 477 | S477N | aGc | aAc | 6 | 6 | B.1.351 | 0.000178 |
S | 477 | S477S | agC | agT | 6 | 6 | B.1.517 | 0.002562 |
S | 477 | S477T | aGc | aCc | 6 | 6 | B.1.617.2 | 0.000023 |
S | 477 | S477I | aGc | aTc | 6 | 6 | P.1 | 0.000095 |
S | 477 | S477N | aGc | aAc | 6 | 6 | P.1.12 | 0.002904 |
S | 477 | S477S | agC | agT | 6 | 6 | P.1.7 | 0.001916 |
S | 477 | S477S | agC | agT | 5 | 5 | A.27 | 0.008278 |
S | 477 | S477C | Agc | Tgc | 5 | 5 | All | 0.000001 |
S | 477 | S477S | agC | agT | 5 | 5 | AY.10 | 0.00265 |
S | 477 | S477G | Agc | Ggc | 5 | 5 | AY.102 | 0.000133 |
S | 477 | S477S | agC | agT | 5 | 5 | AY.107 | 0.00233 |
S | 477 | S477R | agC | agA | 5 | 5 | AY.111 | 0.000916 |
S | 477 | S477N | aGc | aAc | 5 | 5 | AY.20 | 0.000194 |
S | 477 | S477S | agC | agT | 5 | 5 | AY.23.1 | 0.002087 |
S | 477 | S477N | aGc | aAc | 5 | 5 | AY.35 | 0.001165 |
S | 477 | S477S | agC | agT | 5 | 5 | AY.4.3 | 0.004209 |
S | 477 | S477R | agC | agA | 5 | 5 | AY.44 | 0.00003 |
S | 477 | S477S | agC | agT | 5 | 5 | AY.46.2 | 0.003177 |
S | 477 | S477I | aGc | aTc | 5 | 5 | AY.48 | 0.002326 |
S | 477 | S477N | aGc | aAc | 5 | 5 | AY.53 | 0.001438 |
S | 477 | S477S | agC | agT | 5 | 5 | AY.58 | 0.004537 |
S | 477 | S477S | agC | agT | 5 | 5 | AY.75.1 | 0.000902 |
S | 477 | S477S | agC | agT | 5 | 5 | AY.89 | 0.02451 |
S | 477 | S477I | aGc | aTc | 4 | 5 | AY.99 | 0.004197 |
S | 477 | S477I | aGC | aTT | 1 | 5 | AY.99 | 0.001049 |
S | 477 | S477S | agC | agT | 5 | 5 | B | 0.000639 |
S | 477 | S477N | aGc | aAc | 5 | 5 | B.1.1.153 | 0.005476 |
S | 477 | S477S | agC | agT | 5 | 5 | B.1.1.28 | 0.001556 |
S | 477 | S477G | Agc | Ggc | 5 | 5 | B.1.1.398 | 0.016129 |
S | 477 | S477R | agC | agA | 5 | 5 | B.1.177 | 0.000066 |
S | 477 | S477N | aGc | aAc | 5 | 5 | B.1.177.81 | 0.000947 |
S | 477 | S477S | agC | agT | 5 | 5 | B.1.234 | 0.00066 |
S | 477 | S477I | aGc | aTc | 5 | 5 | B.1.36 | 0.00073 |
S | 477 | S477I | aGc | aTc | 5 | 5 | B.1.36.8 | 0.005 |
S | 477 | S477N | aGc | aAc | 5 | 5 | B.1.456 | 0.01634 |
S | 477 | S477N | aGc | aAc | 5 | 5 | B.1.476 | 0.5 |
S | 477 | S477R | agC | agA | 5 | 5 | B.1.517 | 0.002135 |
S | 477 | S477S | agC | agT | 5 | 5 | B.1.526 | 0.000118 |
S | 477 | S477G | Agc | Ggc | 5 | 5 | B.1.564 | 0.002129 |
S | 477 | S477N | aGc | aAc | 5 | 5 | B.1.625 | 0.011765 |
S | 477 | S477S | agC | agT | 5 | 5 | B.1.629 | 0.066667 |
S | 477 | S477S | agC | agT | 5 | 5 | B.1.637 | 0.000365 |
S | 477 | S477N | aGc | aAc | 5 | 5 | P.1.2 | 0.00578 |
S | 477 | S477S | agC | agT | 5 | 5 | Q.3 | 0.000725 |
S | 477 | S477V | AGc | GTc | 2 | 4 | 0.111111 | |
S | 477 | S477I | aGc | aTc | 2 | 4 | 0.111111 | |
S | 477 | S477G | Agc | Ggc | 2 | 4 | 0.111111 | |
S | 477 | S477I | aGC | aTT | 2 | 4 | 0.111111 | |
S | 477 | S477V | AGC | GTT | 2 | 4 | 0.111111 | |
S | 477 | S477G | AgC | GgT | 2 | 4 | 0.111111 | |
S | 477 | S477D | AGc | GAc | 4 | 4 | All | 0.000001 |
S | 477 | S477I | aGc | aTc | 4 | 4 | AY.100 | 0.000184 |
S | 477 | S477S | agC | agT | 4 | 4 | AY.110 | 0.000451 |
S | 477 | S477I | aGc | aTc | 4 | 4 | AY.118 | 0.000251 |
S | 477 | S477N | aGc | aAc | 4 | 4 | AY.12 | 0.001264 |
S | 477 | S477N | aGc | aAc | 4 | 4 | AY.120 | 0.000149 |
S | 477 | S477I | aGc | aTc | 4 | 4 | AY.121 | 0.000541 |
S | 477 | S477N | aGc | aAc | 4 | 4 | AY.23 | 0.000279 |
S | 477 | S477I | aGc | aTc | 4 | 4 | AY.32 | 0.00213 |
S | 477 | S477S | agC | agT | 4 | 4 | AY.35 | 0.000932 |
S | 477 | S477I | aGc | aTc | 4 | 4 | AY.35 | 0.000932 |
S | 477 | S477I | aGc | aTc | 4 | 4 | AY.38 | 0.001997 |
S | 477 | S477G | Agc | Ggc | 4 | 4 | AY.39 | 0.000099 |
S | 477 | S477I | aGc | aTc | 4 | 4 | AY.45 | 0.000487 |
S | 477 | S477I | aGc | aTc | 4 | 4 | AY.46 | 0.000416 |
S | 477 | S477S | agC | agT | 4 | 4 | AY.53 | 0.00115 |
S | 477 | S477I | aGc | aTc | 3 | 4 | AY.6 | 0.000123 |
S | 477 | S477I | aGC | aTT | 1 | 4 | AY.6 | 0.000041 |
S | 477 | S477S | agC | agT | 4 | 4 | AY.61 | 0.000419 |
S | 477 | S477S | agC | agT | 4 | 4 | AY.68 | 0.001095 |
S | 477 | S477I | aGc | aTc | 4 | 4 | AY.7.1 | 0.000451 |
S | 477 | S477S | agC | agT | 4 | 4 | AY.86 | 0.00332 |
S | 477 | S477G | Agc | Ggc | 4 | 4 | AY.9.1 | 0.000335 |
S | 477 | S477S | agC | agT | 4 | 4 | AY.9.1 | 0.000335 |
S | 477 | S477I | aGc | aTc | 4 | 4 | B.1.1 | 0.000073 |
S | 477 | S477R | agC | agA | 4 | 4 | B.1.1.129 | 0.036697 |
S | 477 | S477N | aGc | aAc | 4 | 4 | B.1.1.207 | 0.004728 |
S | 477 | S477N | aGc | aAc | 4 | 4 | B.1.1.306 | 0.001754 |
S | 477 | S477S | agC | agT | 4 | 4 | B.1.1.354 | 0.017544 |
S | 477 | S477S | agC | agT | 4 | 4 | B.1.1.434 | 0.001394 |
S | 477 | S477S | agC | agT | 4 | 4 | B.1.177.23 | 0.012945 |
S | 477 | S477R | agC | agA | 4 | 4 | B.1.214.2 | 0.002398 |
S | 477 | S477I | aGc | aTc | 4 | 4 | B.1.229 | 0.038835 |
S | 477 | S477N | aGc | aAc | 4 | 4 | B.1.234 | 0.000528 |
S | 477 | S477N | aGc | aAc | 4 | 4 | B.1.36.22 | 0.004831 |
S | 477 | S477N | aGc | aAc | 4 | 4 | B.1.465 | 0.015209 |
S | 477 | S477T | aGc | aCc | 4 | 4 | B.1.525 | 0.000453 |
S | 477 | S477I | aGc | aTc | 4 | 4 | B.1.637 | 0.000292 |
S | 477 | S477I | aGc | aTc | 4 | 4 | B.1.9.5 | 0.022727 |
S | 477 | S477N | aGc | aAc | 4 | 4 | B.23 | 0.011696 |
S | 477 | S477N | aGc | aAc | 4 | 4 | P.1.1 | 0.001271 |
S | 477 | S477S | agC | agT | 4 | 4 | P.1.10 | 0.001078 |
S | 477 | S477R | agC | agA | 4 | 4 | R.1 | 0.00036 |
S | 477 | S477I | aGc | aTc | 3 | 3 | AY.1 | 0.001187 |
S | 477 | S477G | Agc | Ggc | 3 | 3 | AY.100 | 0.000138 |
S | 477 | S477S | agC | agT | 3 | 3 | AY.108 | 0.003308 |
S | 477 | S477I | aGc | aTc | 3 | 3 | AY.111 | 0.000549 |
S | 477 | S477I | aGc | aTc | 3 | 3 | AY.117 | 0.000254 |
S | 477 | S477S | agC | agT | 3 | 3 | AY.14 | 0.000264 |
S | 477 | S477G | Agc | Ggc | 3 | 3 | AY.23 | 0.000209 |
S | 477 | S477R | agC | agA | 3 | 3 | AY.25 | 0.000018 |
S | 477 | S477del | AGC | --- | 3 | 3 | AY.25 | 0.000018 |
S | 477 | S477R | agC | agA | 3 | 3 | AY.29 | 0.000047 |
S | 477 | S477S | agC | agT | 3 | 3 | AY.29.1 | 0.000662 |
S | 477 | S477T | aGc | aCc | 3 | 3 | AY.4.2 | 0.000065 |
S | 477 | S477N | aGc | aAc | 3 | 3 | AY.4.2 | 0.000065 |
S | 477 | S477G | Agc | Ggc | 3 | 3 | AY.4.2 | 0.000065 |
S | 477 | S477I | aGc | aTc | 3 | 3 | AY.4.2.1 | 0.000447 |
S | 477 | S477I | aGc | aTc | 3 | 3 | AY.46.4 | 0.000494 |
S | 477 | S477T | aGc | aCc | 3 | 3 | AY.46.6 | 0.000217 |
S | 477 | S477I | aGc | aTc | 3 | 3 | AY.46.6 | 0.000217 |
S | 477 | S477G | Agc | Ggc | 3 | 3 | AY.5 | 0.000062 |
S | 477 | S477S | agC | agT | 3 | 3 | AY.52 | 0.002443 |
S | 477 | S477I | aGc | aTc | 3 | 3 | AY.53 | 0.000863 |
S | 477 | S477S | agC | agT | 3 | 3 | AY.87 | 0.002498 |
S | 477 | S477S | agC | agT | 3 | 3 | AY.91 | 0.002191 |
S | 477 | S477N | aGc | aAc | 3 | 3 | AY.98 | 0.000237 |
S | 477 | S477N | aGc | aAc | 3 | 3 | B.1.1.144 | 0.085714 |
S | 477 | S477S | agC | agT | 3 | 3 | B.1.1.255 | 0.009091 |
S | 477 | S477N | aGc | aAc | 3 | 3 | B.1.1.274 | 0.015152 |
S | 477 | S477S | agC | agT | 3 | 3 | B.1.1.294 | 0.003797 |
S | 477 | S477I | aGc | aTc | 3 | 3 | B.1.1.33 | 0.001263 |
S | 477 | S477N | aGc | aAc | 3 | 3 | B.1.1.515 | 0.06 |
S | 477 | S477N | aGc | aAc | 3 | 3 | B.1.1.519 | 0.000119 |
S | 477 | S477S | agC | agT | 3 | 3 | B.1.1.63 | 0.001157 |
S | 477 | S477S | agC | agT | 3 | 3 | B.1.177.88 | 0.037037 |
S | 477 | S477G | Agc | Ggc | 3 | 3 | B.1.2 | 0.000026 |
S | 477 | S477R | agC | agA | 3 | 3 | B.1.234 | 0.000396 |
S | 477 | S477I | aGc | aTc | 3 | 3 | B.1.239 | 0.003663 |
S | 477 | S477N | aGc | aAc | 3 | 3 | B.1.241 | 0.002435 |
S | 477 | S477G | Agc | Ggc | 3 | 3 | B.1.243 | 0.000209 |
S | 477 | S477S | agC | agT | 3 | 3 | B.1.258.14 | 0.002941 |
S | 477 | S477G | Agc | Ggc | 3 | 3 | B.1.351 | 0.000089 |
S | 477 | S477N | aGc | aAc | 3 | 3 | B.1.408 | 0.01107 |
S | 477 | S477N | aGc | aAc | 3 | 3 | B.1.416.1 | 0.004687 |
S | 477 | S477S | agC | agT | 3 | 3 | B.1.466.2 | 0.001174 |
S | 477 | S477N | aGc | aAc | 3 | 3 | B.1.473 | 0.057692 |
S | 477 | S477I | aGc | aTc | 3 | 3 | B.1.521 | 0.014925 |
S | 477 | S477S | agC | agT | 3 | 3 | B.1.525 | 0.000339 |
S | 477 | S477K | aGC | aAA | 3 | 3 | B.1.526 | 0.000071 |
S | 477 | S477R | agC | agA | 3 | 3 | B.1.577 | 0.002062 |
S | 477 | S477S | agC | agT | 3 | 3 | B.1.596 | 0.000261 |
S | 477 | S477S | agC | agT | 3 | 3 | B.1.609 | 0.001438 |
S | 477 | S477N | aGc | aAc | 3 | 3 | B.1.609 | 0.001438 |
S | 477 | S477del | AGC | --- | 3 | 3 | B.1.617.2 | 0.000011 |
S | 477 | S477R | agC | agA | 3 | 3 | B.1.621 | 0.000266 |
S | 477 | S477N | aGc | aAc | 3 | 3 | C.36.3 | 0.001702 |
S | 477 | S477I | aGc | aTc | 3 | 3 | Q.8 | 0.000495 |
S | 477 | S477del | AGC | --- | 2 | 2 | 0.111111 | |
S | 477 | S477S | agC | agT | 2 | 2 | 0.111111 | |
S | 477 | S477T | aGC | aCT | 2 | 2 | 0.111111 | |
S | 477 | S477S | agC | agT | 2 | 2 | A.2.5 | 0.000998 |
S | 477 | S477S | agC | agT | 2 | 2 | AY.1 | 0.000791 |
S | 477 | S477R | agC | agG | 1 | 2 | AY.103 | 0.000006 |
S | 477 | S477R | agC | agA | 1 | 2 | AY.103 | 0.000006 |
S | 477 | S477G | Agc | Ggc | 2 | 2 | AY.105 | 0.001286 |
S | 477 | S477S | agC | agT | 2 | 2 | AY.105 | 0.001286 |
S | 477 | S477I | aGc | aTc | 2 | 2 | AY.106 | 0.00067 |
S | 477 | S477N | aGc | aAc | 2 | 2 | AY.108 | 0.002205 |
S | 477 | S477G | Agc | Ggc | 2 | 2 | AY.108 | 0.002205 |
S | 477 | S477S | agC | agT | 2 | 2 | AY.109 | 0.001479 |
S | 477 | S477I | aGc | aTc | 2 | 2 | AY.109 | 0.001479 |
S | 477 | S477S | agC | agT | 2 | 2 | AY.11 | 0.002677 |
S | 477 | S477I | aGc | aTc | 2 | 2 | AY.113 | 0.000285 |
S | 477 | S477del | AGC | --- | 2 | 2 | AY.113 | 0.000285 |
S | 477 | S477N | aGc | aAc | 2 | 2 | AY.118 | 0.000125 |
S | 477 | S477I | aGc | aTc | 2 | 2 | AY.12 | 0.000632 |
S | 477 | S477S | agC | agT | 2 | 2 | AY.19 | 0.002281 |
S | 477 | S477S | agC | agT | 2 | 2 | AY.21 | 0.003795 |
S | 477 | S477I | aGc | aTc | 2 | 2 | AY.24 | 0.000862 |
S | 477 | S477G | Agc | Ggc | 2 | 2 | AY.26 | 0.000057 |
S | 477 | S477I | aGc | aTc | 2 | 2 | AY.37 | 0.000632 |
S | 477 | S477N | aGc | aAc | 2 | 2 | AY.39 | 0.000049 |
S | 477 | S477del | AGC | --- | 2 | 2 | AY.4 | 0.000003 |
S | 477 | S477T | aGc | aCc | 2 | 2 | AY.44 | 0.000012 |
S | 477 | S477S | agC | agT | 2 | 2 | AY.46.4 | 0.000329 |
S | 477 | S477I | aGc | aTc | 2 | 2 | AY.5.4 | 0.000553 |
S | 477 | S477I | aGc | aTc | 2 | 2 | AY.54 | 0.000191 |
S | 477 | S477S | agC | agT | 2 | 2 | AY.54 | 0.000191 |
S | 477 | S477S | agC | agT | 2 | 2 | AY.56 | 0.00321 |
S | 477 | S477G | Agc | Ggc | 2 | 2 | AY.6 | 0.000082 |
S | 477 | S477N | aGc | aAc | 2 | 2 | AY.6 | 0.000082 |
S | 477 | S477I | aGc | aTc | 2 | 2 | AY.64 | 0.00119 |
S | 477 | S477I | aGc | aTc | 2 | 2 | AY.67 | 0.000929 |
S | 477 | S477N | aGc | aAc | 2 | 2 | AY.68 | 0.000547 |
S | 477 | S477I | aGc | aTc | 2 | 2 | AY.68 | 0.000547 |
S | 477 | S477G | Agc | Ggc | 2 | 2 | AY.7.1 | 0.000225 |
S | 477 | S477N | aGc | aAc | 2 | 2 | AY.72 | 0.002721 |
S | 477 | S477S | agC | agT | 2 | 2 | AY.73 | 0.001331 |
S | 477 | S477N | aGc | aAc | 2 | 2 | AY.74 | 0.000231 |
S | 477 | S477del | AGC | --- | 2 | 2 | AY.75 | 0.000112 |
S | 477 | S477I | aGc | aTc | 2 | 2 | AY.79 | 0.002421 |
S | 477 | S477T | aGc | aCc | 2 | 2 | AY.9 | 0.000135 |
S | 477 | S477T | aGc | aCc | 2 | 2 | AY.9.2 | 0.000073 |
S | 477 | S477G | Agc | Ggc | 2 | 2 | AY.92 | 0.000575 |
S | 477 | S477I | aGc | aTc | 2 | 2 | AY.92 | 0.000575 |
S | 477 | S477S | agC | agT | 2 | 2 | AY.93 | 0.000546 |
S | 477 | S477S | agC | agT | 2 | 2 | AY.94 | 0.000885 |
S | 477 | S477N | aGc | aAc | 2 | 2 | AY.95 | 0.001522 |
S | 477 | S477I | aGc | aTc | 2 | 2 | AY.95 | 0.001522 |
S | 477 | S477N | aGc | aAc | 2 | 2 | AY.99 | 0.002099 |
S | 477 | S477del | AGC | --- | 2 | 2 | B.1 | 0.000018 |
S | 477 | S477T | aGc | aCc | 2 | 2 | B.1 | 0.000018 |
S | 477 | S477del1 | agC | ag- | 2 | 2 | B.1.1 | 0.000036 |
S | 477 | S477C | Agc | Tgc | 2 | 2 | B.1.1 | 0.000036 |
S | 477 | S477S | agC | agT | 2 | 2 | B.1.1.1 | 0.000653 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.1.10 | 0.00223 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.1.220 | 0.003717 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.1.241 | 0.004141 |
S | 477 | S477R | agC | agA | 2 | 2 | B.1.1.263 | 0.003115 |
S | 477 | S477S | agC | agT | 2 | 2 | B.1.1.269 | 0.002706 |
S | 477 | S477R | agC | agA | 2 | 2 | B.1.1.284 | 0.000215 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.1.294 | 0.002532 |
S | 477 | S477S | agC | agT | 2 | 2 | B.1.1.300 | 0.021505 |
S | 477 | S477I | aGc | aTc | 2 | 2 | B.1.1.306 | 0.000877 |
S | 477 | S477S | agC | agT | 2 | 2 | B.1.1.311 | 0.000716 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.1.354 | 0.008772 |
S | 477 | S477S | agC | agT | 2 | 2 | B.1.1.369 | 0.000892 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.1.370 | 0.025316 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.1.372 | 0.001377 |
S | 477 | S477R | agC | agA | 2 | 2 | B.1.1.385 | 0.008929 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.1.409 | 0.005666 |
S | 477 | S477K | aGC | aAG | 2 | 2 | B.1.1.433 | 0.002849 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.1.433 | 0.002849 |
S | 477 | S477S | agC | agT | 2 | 2 | B.1.1.500 | 0.04 |
S | 477 | S477I | aGc | aTc | 2 | 2 | B.1.1.519 | 0.000079 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.1.521 | 0.010695 |
S | 477 | S477del1 | Agc | -gc | 1 | 2 | B.1.1.7 | 0.000001 |
S | 477 | S477del1 | agC | ag- | 1 | 2 | B.1.1.7 | 0.000001 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.1.70 | 0.000682 |
S | 477 | S477I | aGc | aTc | 2 | 2 | B.1.128 | 0.001271 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.139 | 0.001466 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.146 | 0.008475 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.157 | 0.00597 |
S | 477 | S477S | agC | agT | 2 | 2 | B.1.166 | 0.016949 |
S | 477 | S477G | Agc | Ggc | 2 | 2 | B.1.177.21 | 0.000153 |
S | 477 | S477I | aGc | aTc | 2 | 2 | B.1.177.32 | 0.002699 |
S | 477 | S477S | agC | agT | 2 | 2 | B.1.177.44 | 0.001038 |
S | 477 | S477S | agC | agT | 2 | 2 | B.1.177.65 | 0.001331 |
S | 477 | S477T | aGc | aCc | 2 | 2 | B.1.177.81 | 0.000379 |
S | 477 | S477R | agC | agA | 2 | 2 | B.1.236 | 0.004107 |
S | 477 | S477S | agC | agT | 2 | 2 | B.1.243 | 0.000139 |
S | 477 | S477I | aGc | aTc | 2 | 2 | B.1.260 | 0.006689 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.340 | 0.008584 |
S | 477 | S477G | Agc | Ggc | 2 | 2 | B.1.346 | 0.002621 |
S | 477 | S477R | agC | agA | 2 | 2 | B.1.351 | 0.000059 |
S | 477 | S477T | aGc | aCc | 2 | 2 | B.1.36 | 0.000292 |
S | 477 | S477S | agC | agT | 2 | 2 | B.1.36 | 0.000292 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.36.1 | 0.002281 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.367 | 0.001585 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.409 | 0.001563 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.427 | 0.000101 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.462 | 0.014493 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.470 | 0.002809 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.497 | 0.00063 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.523 | 0.004902 |
S | 477 | S477S | agC | agT | 2 | 2 | B.1.560 | 0.009259 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.575 | 0.000607 |
S | 477 | S477S | agC | agT | 2 | 2 | B.1.575.1 | 0.004878 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.576 | 0.001813 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.582 | 0.000981 |
S | 477 | S477I | aGc | aTc | 2 | 2 | B.1.596 | 0.000174 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.612 | 0.005305 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.617.1 | 0.000258 |
S | 477 | S477T | aGc | aCc | 2 | 2 | B.1.617.3 | 0.00597 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.621 | 0.000177 |
S | 477 | S477I | aGc | aTc | 2 | 2 | B.1.621.1 | 0.001012 |
S | 477 | S477del1 | aGc | a-c | 2 | 2 | B.1.627 | 0.00404 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.637 | 0.000146 |
S | 477 | S477N | aGc | aAc | 2 | 2 | B.1.78 | 0.017094 |
S | 477 | S477N | aGc | aAc | 2 | 2 | C.1.2 | 0.008511 |
S | 477 | S477N | aGc | aAc | 2 | 2 | C.23 | 0.011628 |
S | 477 | S477N | aGc | aAc | 2 | 2 | C.37.1 | 0.005236 |
S | 477 | S477N | aGc | aAc | 2 | 2 | C.6 | 0.074074 |
S | 477 | S477N | aGc | aAc | 2 | 2 | P.1.14 | 0.000096 |
S | 477 | S477N | aGc | aAc | 2 | 2 | P.1.17 | 0.000324 |
S | 477 | S477S | agC | agT | 2 | 2 | P.3 | 0.00319 |
S | 477 | S477G | Agc | Ggc | 2 | 2 | Q.1 | 0.000253 |
S | 477 | S477S | agC | agT | 2 | 2 | Q.4 | 0.00091 |
S | 477 | S477S | agC | agT | 2 | 2 | S.1 | 0.009901 |
S | 477 | S477R | agC | agA | 1 | 1 | 0.055556 | |
S | 477 | S477N | aGc | aAc | 1 | 1 | A | 0.000387 |
S | 477 | S477del | AGC | --- | 1 | 1 | A | 0.000387 |
S | 477 | S477N | aGc | aAc | 1 | 1 | A.1 | 0.000282 |
S | 477 | S477N | aGc | aAc | 1 | 1 | A.2 | 0.000662 |
S | 477 | S477I | aGc | aTc | 1 | 1 | A.2.5 | 0.000499 |
S | 477 | S477N | aGc | aAc | 1 | 1 | A.2.5 | 0.000499 |
S | 477 | S477N | aGc | aAc | 1 | 1 | A.3 | 0.002096 |
S | 477 | S477G | Agc | Ggc | 1 | 1 | A.5 | 0.001923 |
S | 477 | S477R | agC | agG | 1 | 1 | AB.1 | 0.008197 |
S | 477 | S477I | aGc | aTc | 1 | 1 | AD.2 | 0.000219 |
S | 477 | S477del2 | AGc | --c | 1 | 1 | All | 0 |
S | 477 | S477N | aGc | aAc | 1 | 1 | AP.1 | 0.001502 |
S | 477 | S477G | Agc | Ggc | 1 | 1 | AU.2 | 0.002421 |
S | 477 | S477del | AGC | --- | 1 | 1 | AY.102 | 0.000027 |
S | 477 | S477I | aGc | aTc | 1 | 1 | AY.104 | 0.001984 |
S | 477 | S477S | agC | agT | 1 | 1 | AY.104 | 0.001984 |
S | 477 | S477T | aGc | aCc | 1 | 1 | AY.106 | 0.000335 |
S | 477 | S477G | Agc | Ggc | 1 | 1 | AY.106 | 0.000335 |
S | 477 | S477I | aGc | aTc | 1 | 1 | AY.107 | 0.000466 |
S | 477 | S477del | AGC | --- | 1 | 1 | AY.107 | 0.000466 |
S | 477 | S477del | AGC | --- | 1 | 1 | AY.108 | 0.001103 |
S | 477 | S477I | aGc | aTc | 1 | 1 | AY.108 | 0.001103 |
S | 477 | S477R | Agc | Cgc | 1 | 1 | AY.110 | 0.000113 |
S | 477 | S477I | aGc | aTc | 1 | 1 | AY.114 | 0.000231 |
S | 477 | S477N | aGc | aAc | 1 | 1 | AY.116 | 0.000287 |
S | 477 | S477R | agC | agA | 1 | 1 | AY.116 | 0.000287 |
S | 477 | S477I | aGc | aTc | 1 | 1 | AY.116.1 | 0.000311 |
S | 477 | S477N | aGc | aAc | 1 | 1 | AY.117 | 0.000085 |
S | 477 | S477R | agC | agA | 1 | 1 | AY.118 | 0.000063 |
S | 477 | S477N | aGc | aAc | 1 | 1 | AY.119 | 0.000035 |
S | 477 | S477del | AGC | --- | 1 | 1 | AY.119 | 0.000035 |
S | 477 | S477I | aGC | aTT | 1 | 1 | AY.120.1 | 0.000321 |
S | 477 | S477N | aGc | aAc | 1 | 1 | AY.13 | 0.000161 |
S | 477 | S477G | Agc | Ggc | 1 | 1 | AY.13 | 0.000161 |
S | 477 | S477I | aGc | aTc | 1 | 1 | AY.14 | 0.000088 |
S | 477 | S477S | agC | agT | 1 | 1 | AY.2 | 0.000356 |
S | 477 | S477I | aGc | aTc | 1 | 1 | AY.2 | 0.000356 |
S | 477 | S477T | aGc | aCc | 1 | 1 | AY.20 | 0.000039 |
S | 477 | S477N | aGc | aAc | 1 | 1 | AY.24 | 0.000431 |
S | 477 | S477T | aGc | aCc | 1 | 1 | AY.25 | 0.000006 |
S | 477 | S477N | aGc | aAc | 1 | 1 | AY.26 | 0.000028 |
S | 477 | S477T | aGc | aCc | 1 | 1 | AY.26 | 0.000028 |
S | 477 | S477R | agC | agA | 1 | 1 | AY.27 | 0.000065 |
S | 477 | S477G | Agc | Ggc | 1 | 1 | AY.28 | 0.00189 |
S | 477 | S477I | aGc | aTc | 1 | 1 | AY.29.1 | 0.000221 |
S | 477 | S477G | Agc | Ggc | 1 | 1 | AY.3 | 0.00001 |
S | 477 | S477del | AGC | --- | 1 | 1 | AY.3 | 0.00001 |
S | 477 | S477R | agC | agA | 1 | 1 | AY.3 | 0.00001 |
S | 477 | S477G | Agc | Ggc | 1 | 1 | AY.3.1 | 0.000085 |
S | 477 | S477I | aGc | aTc | 1 | 1 | AY.3.1 | 0.000085 |
S | 477 | S477S | agC | agT | 1 | 1 | AY.30 | 0.000396 |
S | 477 | S477S | agC | agT | 1 | 1 | AY.34 | 0.000097 |
S | 477 | S477I | aGc | aTc | 1 | 1 | AY.34.1 | 0.00051 |
S | 477 | S477S | agC | agT | 1 | 1 | AY.37 | 0.000316 |
S | 477 | S477S | agC | agT | 1 | 1 | AY.38 | 0.000499 |
S | 477 | S477R | agC | agA | 1 | 1 | AY.39 | 0.000025 |
S | 477 | S477I | aGc | aTc | 1 | 1 | AY.39.1 | 0.00004 |
S | 477 | S477S | agC | agT | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 477 | S477S | agC | agT | 1 | 1 | AY.4.4 | 0.000409 |
S | 477 | S477S | agC | agT | 1 | 1 | AY.4.5 | 0.000107 |
S | 477 | S477V | AGc | GTc | 1 | 1 | AY.41 | 0.000294 |
S | 477 | S477T | aGc | aCc | 1 | 1 | AY.42 | 0.00004 |
S | 477 | S477del1 | AGc | -Ac | 1 | 1 | AY.42 | 0.00004 |
S | 477 | S477G | Agc | Ggc | 1 | 1 | AY.42 | 0.00004 |
S | 477 | S477del2 | AGc | --c | 1 | 1 | AY.43 | 0.000004 |
S | 477 | S477T | aGC | aCT | 1 | 1 | AY.43 | 0.000004 |
S | 477 | S477G | Agc | Ggc | 1 | 1 | AY.45 | 0.000122 |
S | 477 | S477del1 | AGC | -AT | 1 | 1 | AY.45 | 0.000122 |
S | 477 | S477N | aGc | aAc | 1 | 1 | AY.45 | 0.000122 |
S | 477 | S477N | aGc | aAc | 1 | 1 | AY.46.5 | 0.000198 |
S | 477 | S477G | Agc | Ggc | 1 | 1 | AY.46.5 | 0.000198 |
S | 477 | S477N | aGc | aAc | 1 | 1 | AY.46.6 | 0.000072 |
S | 477 | S477R | agC | agA | 1 | 1 | AY.47 | 0.000031 |
S | 477 | S477N | aGc | aAc | 1 | 1 | AY.5 | 0.000021 |
S | 477 | S477S | agC | agT | 1 | 1 | AY.51 | 0.000909 |
S | 477 | S477T | aGc | aCc | 1 | 1 | AY.53 | 0.000288 |
S | 477 | S477I | aGc | aTc | 1 | 1 | AY.55 | 0.000917 |
S | 477 | S477G | Agc | Ggc | 1 | 1 | AY.55 | 0.000917 |
S | 477 | S477T | aGc | aCc | 1 | 1 | AY.58 | 0.000907 |
S | 477 | S477I | aGc | aTc | 1 | 1 | AY.58 | 0.000907 |
S | 477 | S477S | agC | agT | 1 | 1 | AY.60 | 0.000938 |
S | 477 | S477N | aGc | aAc | 1 | 1 | AY.61 | 0.000105 |
S | 477 | S477S | agC | agT | 1 | 1 | AY.62 | 0.000436 |
S | 477 | S477S | agC | agT | 1 | 1 | AY.65 | 0.000533 |
S | 477 | S477del | AGC | --- | 1 | 1 | AY.67 | 0.000464 |
S | 477 | S477N | aGc | aAc | 1 | 1 | AY.69 | 0.000187 |
S | 477 | S477I | aGc | aTc | 1 | 1 | AY.7 | 0.000196 |
S | 477 | S477S | agC | agT | 1 | 1 | AY.7.1 | 0.000113 |
S | 477 | S477I | aGc | aTc | 1 | 1 | AY.70 | 0.000209 |
S | 477 | S477G | Agc | Ggc | 1 | 1 | AY.75 | 0.000056 |
S | 477 | S477T | aGc | aCc | 1 | 1 | AY.75.1 | 0.00018 |
S | 477 | S477S | agC | agT | 1 | 1 | AY.76 | 0.004831 |
S | 477 | S477I | aGc | aTc | 1 | 1 | AY.77 | 0.001127 |
S | 477 | S477S | agC | agT | 1 | 1 | AY.79 | 0.001211 |
S | 477 | S477I | aGc | aTc | 1 | 1 | AY.8 | 0.000606 |
S | 477 | S477del | AGC | --- | 1 | 1 | AY.84 | 0.000437 |
S | 477 | S477S | agC | agT | 1 | 1 | AY.85 | 0.000427 |
S | 477 | S477G | Agc | Ggc | 1 | 1 | AY.85 | 0.000427 |
S | 477 | S477N | aGc | aAc | 1 | 1 | AY.86 | 0.00083 |
S | 477 | S477I | aGc | aTc | 1 | 1 | AY.88 | 0.000884 |
S | 477 | S477N | aGc | aAc | 1 | 1 | AY.9 | 0.000068 |
S | 477 | S477S | agC | agT | 1 | 1 | AY.9 | 0.000068 |
S | 477 | S477I | aGc | aTc | 1 | 1 | AY.9.1 | 0.000084 |
S | 477 | S477T | aGc | aCc | 1 | 1 | AY.9.1 | 0.000084 |
S | 477 | S477D | AGc | GAc | 1 | 1 | AY.9.2 | 0.000037 |
S | 477 | S477G | Agc | Ggc | 1 | 1 | AY.9.2.1 | 0.001976 |
S | 477 | S477S | agC | agT | 1 | 1 | AY.90 | 0.000684 |
S | 477 | S477S | agC | agT | 1 | 1 | AY.91.1 | 0.004065 |
S | 477 | S477N | aGc | aAc | 1 | 1 | AY.92 | 0.000287 |
S | 477 | S477I | aGc | aTc | 1 | 1 | AY.93 | 0.000273 |
S | 477 | S477N | aGc | aAc | 1 | 1 | AY.94 | 0.000443 |
S | 477 | S477S | agC | agT | 1 | 1 | AY.96 | 0.002075 |
S | 477 | S477I | aGc | aTc | 1 | 1 | AY.96 | 0.002075 |
S | 477 | S477S | agC | agT | 1 | 1 | AY.97 | 0.001701 |
S | 477 | S477V | AGC | GTA | 1 | 1 | AY.99 | 0.001049 |
S | 477 | S477T | aGc | aCc | 1 | 1 | AY.99.2 | 0.000092 |
S | 477 | S477S | agC | agT | 1 | 1 | AY.99.2 | 0.000092 |
S | 477 | S477D | AGc | GAc | 1 | 1 | B.1 | 0.000009 |
S | 477 | S477C | Agc | Tgc | 1 | 1 | B.1 | 0.000009 |
S | 477 | S477G | Agc | Ggc | 1 | 1 | B.1.1 | 0.000018 |
S | 477 | S477T | aGc | aCc | 1 | 1 | B.1.1 | 0.000018 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.1.121 | 0.002427 |
S | 477 | S477del | AGC | --- | 1 | 1 | B.1.1.139 | 0.022727 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.1.157 | 0.000913 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.1.161 | 0.003534 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.1.170 | 0.001247 |
S | 477 | S477T | aGc | aCc | 1 | 1 | B.1.1.174 | 0.003378 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.1.176 | 0.000439 |
S | 477 | S477I | aGc | aTc | 1 | 1 | B.1.1.176 | 0.000439 |
S | 477 | S477R | agC | agA | 1 | 1 | B.1.1.189 | 0.001513 |
S | 477 | S477I | aGc | aTc | 1 | 1 | B.1.1.192 | 0.002309 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.1.197 | 0.037037 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.1.198 | 0.001468 |
S | 477 | S477I | aGc | aTc | 1 | 1 | B.1.1.210 | 0.005714 |
S | 477 | S477I | aGc | aTc | 1 | 1 | B.1.1.214 | 0.000055 |
S | 477 | S477R | agC | agA | 1 | 1 | B.1.1.214 | 0.000055 |
S | 477 | S477T | aGc | aCc | 1 | 1 | B.1.1.216 | 0.00089 |
S | 477 | S477I | aGc | aTc | 1 | 1 | B.1.1.222 | 0.000204 |
S | 477 | S477R | agC | agA | 1 | 1 | B.1.1.222 | 0.000204 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.1.236 | 0.006897 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.1.237 | 0.005405 |
S | 477 | S477T | aGc | aCc | 1 | 1 | B.1.1.258 | 0.003257 |
S | 477 | S477I | aGc | aTc | 1 | 1 | B.1.1.263 | 0.001558 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.1.266 | 0.012195 |
S | 477 | S477T | aGc | aCc | 1 | 1 | B.1.1.269 | 0.001353 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.1.269 | 0.001353 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.1.277 | 0.000759 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.1.280 | 0.003086 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.1.284 | 0.000107 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.1.297 | 0.002237 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.1.303 | 0.002762 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.1.306 | 0.000438 |
S | 477 | S477del | AGC | --- | 1 | 1 | B.1.1.306 | 0.000438 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.1.316 | 0.000925 |
S | 477 | S477R | agC | agA | 1 | 1 | B.1.1.316 | 0.000925 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.1.317 | 0.000412 |
S | 477 | S477R | agC | agA | 1 | 1 | B.1.1.318 | 0.000302 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.1.326 | 0.001761 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.1.33 | 0.000421 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.1.349 | 0.010309 |
S | 477 | S477I | aGc | aTc | 1 | 1 | B.1.1.369 | 0.000446 |
S | 477 | S477I | aGc | aTc | 1 | 1 | B.1.1.37 | 0.000193 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.1.376 | 0.005952 |
S | 477 | S477R | agC | agG | 1 | 1 | B.1.1.39 | 0.00051 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.1.404 | 0.015873 |
S | 477 | S477T | aGc | aCc | 1 | 1 | B.1.1.409 | 0.002833 |
S | 477 | S477I | aGc | aTc | 1 | 1 | B.1.1.409 | 0.002833 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.1.409 | 0.002833 |
S | 477 | S477R | agC | agA | 1 | 1 | B.1.1.434 | 0.000349 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.1.448 | 0.002033 |
S | 477 | S477I | aGc | aTc | 1 | 1 | B.1.1.448 | 0.002033 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.1.462 | 0.008621 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.1.464 | 0.001473 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.1.486 | 0.001577 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.1.487 | 0.005587 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.1.50 | 0.000679 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.1.507 | 0.008696 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.1.519 | 0.00004 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.1.52 | 0.012195 |
S | 477 | S477I | aGc | aTc | 1 | 1 | B.1.1.528 | 0.004808 |
S | 477 | S477I | aGc | aTc | 1 | 1 | B.1.1.54 | 0.003021 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.1.61 | 0.008772 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.1.63 | 0.000386 |
S | 477 | S477G | Agc | Ggc | 1 | 1 | B.1.1.63 | 0.000386 |
S | 477 | S477R | agC | agG | 1 | 1 | B.1.1.70 | 0.000341 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.1.70 | 0.000341 |
S | 477 | S477T | aGc | aCc | 1 | 1 | B.1.1.8 | 0.003584 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.1.99 | 0.02381 |
S | 477 | S477I | aGc | aTc | 1 | 1 | B.1.119 | 0.010526 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.124 | 0.007812 |
S | 477 | S477R | agC | agA | 1 | 1 | B.1.139 | 0.000733 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.159 | 0.012195 |
S | 477 | S477K | aGC | aAA | 1 | 1 | B.1.160 | 0.000031 |
S | 477 | S477R | agC | agG | 1 | 1 | B.1.160.32 | 0.004292 |
S | 477 | S477T | aGc | aCc | 1 | 1 | B.1.177 | 0.000013 |
S | 477 | S477G | Agc | Ggc | 1 | 1 | B.1.177 | 0.000013 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.177.20 | 0.001517 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.177.21 | 0.000076 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.177.23 | 0.003236 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.177.32 | 0.00135 |
S | 477 | S477G | Agc | Ggc | 1 | 1 | B.1.177.34 | 0.052632 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.177.35 | 0.000691 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.177.35 | 0.000691 |
S | 477 | S477R | agC | agA | 1 | 1 | B.1.177.4 | 0.000211 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.177.42 | 0.000894 |
S | 477 | S477T | aGc | aCc | 1 | 1 | B.1.177.42 | 0.000894 |
S | 477 | S477G | Agc | Ggc | 1 | 1 | B.1.177.46 | 0.000918 |
S | 477 | S477G | Agc | Ggc | 1 | 1 | B.1.177.60 | 0.000218 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.177.65 | 0.000665 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.177.7 | 0.000165 |
S | 477 | S477I | aGc | aTc | 1 | 1 | B.1.177.7 | 0.000165 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.177.75 | 0.001041 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.177.75 | 0.001041 |
S | 477 | S477I | aGc | aTc | 1 | 1 | B.1.177.8 | 0.000752 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.177.86 | 0.000183 |
S | 477 | S477T | aGc | aCc | 1 | 1 | B.1.2 | 0.000009 |
S | 477 | S477del | AGC | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 477 | S477C | Agc | Tgc | 1 | 1 | B.1.2 | 0.000009 |
S | 477 | S477I | aGc | aTc | 1 | 1 | B.1.206 | 0.000816 |
S | 477 | S477I | aGc | aTc | 1 | 1 | B.1.210 | 0.002132 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.214 | 0.003663 |
S | 477 | S477R | agC | agA | 1 | 1 | B.1.221 | 0.000071 |
S | 477 | S477R | agC | agA | 1 | 1 | B.1.221.2 | 0.004016 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.222 | 0.001692 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.236 | 0.002053 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.239 | 0.001221 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.240 | 0.000216 |
S | 477 | S477R | agC | agA | 1 | 1 | B.1.243 | 0.00007 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.256 | 0.017241 |
S | 477 | S477del | AGC | --- | 1 | 1 | B.1.258 | 0.000067 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.268 | 0.010417 |
S | 477 | S477R | agC | agA | 1 | 1 | B.1.279 | 0.000514 |
S | 477 | S477I | aGc | aTc | 1 | 1 | B.1.279 | 0.000514 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.284 | 0.013158 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.289 | 0.00266 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.311 | 0.000275 |
S | 477 | S477G | Agc | Ggc | 1 | 1 | B.1.311 | 0.000275 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.323 | 0.020833 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.326 | 0.007576 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.332 | 0.003497 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.336 | 0.002439 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.340 | 0.004292 |
S | 477 | S477del | AGC | --- | 1 | 1 | B.1.351 | 0.00003 |
S | 477 | S477I | aGc | aTc | 1 | 1 | B.1.351 | 0.00003 |
S | 477 | S477G | Agc | Ggc | 1 | 1 | B.1.351.2 | 0.000303 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.357 | 0.009524 |
S | 477 | S477I | aGc | aTc | 1 | 1 | B.1.36.16 | 0.001425 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.36.17 | 0.000494 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.36.19 | 0.009259 |
S | 477 | S477I | aGc | aTc | 1 | 1 | B.1.36.29 | 0.000517 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.36.29 | 0.000517 |
S | 477 | S477T | aGc | aCc | 1 | 1 | B.1.369 | 0.000285 |
S | 477 | S477I | aGc | aTc | 1 | 1 | B.1.369 | 0.000285 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.375 | 0.00082 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.378 | 0.006849 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.400 | 0.000429 |
S | 477 | S477T | aGc | aCc | 1 | 1 | B.1.425 | 0.002994 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.426 | 0.001009 |
S | 477 | S477T | aGc | aCc | 1 | 1 | B.1.427 | 0.00005 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.436 | 0.001029 |
S | 477 | S477G | Agc | Ggc | 1 | 1 | B.1.441 | 0.009615 |
S | 477 | S477I | aGc | aTc | 1 | 1 | B.1.448 | 0.002625 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.460 | 0.017857 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.468 | 0.005714 |
S | 477 | S477T | aGc | aCc | 1 | 1 | B.1.468 | 0.005714 |
S | 477 | S477I | aGc | aTc | 1 | 1 | B.1.470 | 0.001404 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.496 | 0.125 |
S | 477 | S477R | Agc | Cgc | 1 | 1 | B.1.497 | 0.000315 |
S | 477 | S477I | aGc | aTc | 1 | 1 | B.1.499 | 0.00105 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.525 | 0.000113 |
S | 477 | S477del | AGC | --- | 1 | 1 | B.1.526 | 0.000024 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.533 | 0.009615 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.538 | 0.008065 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.540 | 0.009709 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.558 | 0.004566 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.567 | 0.003333 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.568 | 0.001111 |
S | 477 | S477R | agC | agA | 1 | 1 | B.1.575 | 0.000303 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.575.2 | 0.004808 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.580 | 0.004065 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.593 | 0.01087 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.595 | 0.000261 |
S | 477 | S477G | Agc | Ggc | 1 | 1 | B.1.598 | 0.016949 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.600 | 0.005848 |
S | 477 | S477C | Agc | Tgc | 1 | 1 | B.1.617.1 | 0.000129 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.617.1 | 0.000129 |
S | 477 | S477D | AGc | GAc | 1 | 1 | B.1.617.2 | 0.000004 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.619.1 | 0.000641 |
S | 477 | S477del | AGC | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 477 | S477I | aGc | aTc | 1 | 1 | B.1.621 | 0.000089 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.627 | 0.00202 |
S | 477 | S477G | Agc | Ggc | 1 | 1 | B.1.631 | 0.003367 |
S | 477 | S477S | agC | agT | 1 | 1 | B.1.8 | 0.001972 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.81 | 0.021277 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.1.9.5 | 0.005682 |
S | 477 | S477I | aGc | aTc | 1 | 1 | B.1.94 | 0.027027 |
S | 477 | S477G | Agc | Ggc | 1 | 1 | B.3 | 0.000831 |
S | 477 | S477del | AGC | --- | 1 | 1 | B.34 | 0.013699 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.52 | 0.010101 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.55 | 0.00295 |
S | 477 | S477N | aGc | aAc | 1 | 1 | B.6 | 0.00091 |
S | 477 | S477N | aGc | aAc | 1 | 1 | C.1 | 0.002392 |
S | 477 | S477N | aGc | aAc | 1 | 1 | C.35 | 0.000774 |
S | 477 | S477T | aGc | aCc | 1 | 1 | C.36.3 | 0.000567 |
S | 477 | S477S | agC | agT | 1 | 1 | C.37.1 | 0.002618 |
S | 477 | S477N | aGc | aAc | 1 | 1 | C.39 | 0.018868 |
S | 477 | S477K | aGC | aAA | 1 | 1 | D.2 | 0.000075 |
S | 477 | S477D | AGc | GAc | 1 | 1 | D.2 | 0.000075 |
S | 477 | S477N | aGc | aAc | 1 | 1 | L.3 | 0.003546 |
S | 477 | S477I | aGc | aTc | 1 | 1 | L.3 | 0.003546 |
S | 477 | S477G | Agc | Ggc | 1 | 1 | N.5 | 0.001767 |
S | 477 | S477N | aGc | aAc | 1 | 1 | P.1 | 0.000016 |
S | 477 | S477G | Agc | Ggc | 1 | 1 | P.1 | 0.000016 |
S | 477 | S477del | AGC | --- | 1 | 1 | P.1.1 | 0.000318 |
S | 477 | S477N | aGc | aAc | 1 | 1 | P.1.10 | 0.000269 |
S | 477 | S477S | agC | agT | 1 | 1 | P.1.12 | 0.000484 |
S | 477 | S477S | agC | agT | 1 | 1 | P.1.6 | 0.001946 |
S | 477 | S477N | aGc | aAc | 1 | 1 | P.1.7 | 0.000319 |
S | 477 | S477S | agC | agT | 1 | 1 | Q.1 | 0.000126 |
S | 477 | S477I | aGc | aTc | 1 | 1 | Q.2 | 0.000613 |
S | 477 | S477T | aGc | aCc | 1 | 1 | Q.2 | 0.000613 |
S | 477 | S477I | aGc | aTc | 1 | 1 | Q.3 | 0.000145 |
S | 477 | S477N | aGc | aAc | 1 | 1 | Q.4 | 0.000455 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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