CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 470

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	470	T470I		nonsyn	aCt	aTt	818	817	0.998778	22970-22972
S	470	T470I		nonsyn	aCT	aTC	818	1	0.00122249	22970-22972
S	470	T470T		syn	acT	acC	739	700	0.947226	22970-22972
S	470	T470T		syn	acT	acA	739	27	0.0365359	22970-22972
S	470	T470T		syn	acT	acG	739	12	0.0162382	22970-22972
S	470	T470N		nonsyn	aCt	aAt	606	604	0.9967	22970-22972
S	470	T470N		nonsyn	aCT	aAC	606	2	0.00330033	22970-22972
S	470	T470K		nonsyn	aCT	aAA	250	248	0.992	22970-22972
S	470	T470K		nonsyn	aCT	aAG	250	2	0.008	22970-22972
S	470	T470A		nonsyn	Act	Gct	48	47	0.979167	22970-22972
S	470	T470A		nonsyn	AcT	GcC	48	1	0.0208333	22970-22972
S	470	T470del		del	ACT	---	40	40	1	22970-22972
S	470	T470S		nonsyn	Act	Tct	24	16	0.666667	22970-22972
S	470	T470S		nonsyn	aCt	aGt	24	8	0.333333	22970-22972
S	470	T470P		nonsyn	Act	Cct	5	5	1	22970-22972
S	470	T470V		nonsyn	ACT	GTG	5	3	0.6	22970-22972
S	470	T470V		nonsyn	ACT	GTC	5	1	0.2	22970-22972
S	470	T470V		nonsyn	ACt	GTt	5	1	0.2	22970-22972
S	470	T470del1		del	acT	ac-	3	3	1	22970-22972
S	470	T470Y		nonsyn	ACt	TAt	1	1	1	22970-22972
S	470	T470D		nonsyn	ACT	GAC	1	1	1	22970-22972
S	470	T470del2		del	aCT	a--	1	1	1	22970-22972
S	470	T470L		nonsyn	ACT	CTG	1	1	1	22970-22972
S	470	T470M		nonsyn	aCT	aTG	1	1	1	22970-22972

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	470	T470I	aCt	aTt	817	818	All	0.000156
S	470	T470I	aCT	aTC	1	818	All	0
S	470	T470T	acT	acC	700	739	All	0.000134
S	470	T470T	acT	acA	27	739	All	0.000005
S	470	T470T	acT	acG	12	739	All	0.000002
S	470	T470N	aCt	aAt	604	606	All	0.000116
S	470	T470N	aCT	aAC	2	606	All	0
S	470	T470T	acT	acC	503	511	AY.4	0.000783
S	470	T470T	acT	acA	8	511	AY.4	0.000012
S	470	T470K	aCT	aAA	248	250	All	0.000047
S	470	T470K	aCT	aAG	2	250	All	0
S	470	T470K	aCT	aAA	246	246	B.1	0.002253
S	470	T470I	aCt	aTt	208	208	AY.4	0.000324
S	470	T470N	aCt	aAt	198	198	P.1.8	0.947368
S	470	T470I	aCt	aTt	162	162	B.1.1.7	0.000145
S	470	T470N	aCt	aAt	80	80	P.1	0.00126
S	470	T470N	aCt	aAt	67	67	B.1.617.2	0.000252
S	470	T470N	aCt	aAt	49	49	AY.43	0.000217
S	470	T470A	Act	Gct	47	48	All	0.000009
S	470	T470A	AcT	GcC	1	48	All	0
S	470	T470I	aCt	aTt	43	43	B.1.617.2	0.000162
S	470	T470del	ACT	---	40	40	All	0.000008
S	470	T470T	acT	acC	37	37	B.1.2	0.000326
S	470	T470I	aCt	aTt	34	34	AY.44	0.000207
S	470	T470N	aCt	aAt	34	34	B.1.36.27	0.025954
S	470	T470I	aCt	aTt	31	31	AY.43	0.000137
S	470	T470N	aCt	aAt	30	30	B.1.36	0.004377
S	470	T470N	aCt	aAt	25	25	B.1	0.000229
S	470	T470T	acT	acC	24	25	B.1.617.2	0.00009
S	470	T470T	acT	acA	1	25	B.1.617.2	0.000004
S	470	T470S	Act	Tct	16	24	All	0.000003
S	470	T470S	aCt	aGt	8	24	All	0.000002
S	470	T470I	aCt	aTt	23	23	AY.103	0.000143
S	470	T470N	aCt	aAt	22	22	B.1.1.7	0.00002
S	470	T470T	acT	acC	12	22	B.1.1.7	0.000011
S	470	T470T	acT	acG	5	22	B.1.1.7	0.000004
S	470	T470T	acT	acA	5	22	B.1.1.7	0.000004
S	470	T470I	aCt	aTt	21	21	AY.25	0.000126
S	470	T470N	aCt	aAt	18	18	AY.29	0.000284
S	470	T470I	aCt	aTt	17	17	AY.5	0.000351
S	470	T470T	acT	acC	16	16	B.1.329	0.009721
S	470	T470I	aCt	aTt	15	15	B.1.2	0.000132
S	470	T470I	aCt	aTt	13	13	B.1	0.000119
S	470	T470I	aCt	aTt	12	12	AY.102	0.000318
S	470	T470A	Act	Gct	12	12	B.1.1	0.000218
S	470	T470I	aCt	aTt	12	12	C.37	0.001393
S	470	T470T	acT	acC	10	11	AY.26	0.000283
S	470	T470T	acT	acA	1	11	AY.26	0.000028
S	470	T470I	aCt	aTt	11	11	AY.3	0.000109
S	470	T470T	acT	acC	7	11	B.1	0.000064
S	470	T470T	acT	acA	3	11	B.1	0.000027
S	470	T470T	acT	acG	1	11	B.1	0.000009
S	470	T470N	aCt	aAt	10	10	AY.29.1	0.002205
S	470	T470A	Act	Gct	10	10	B.1.1.7	0.000009
S	470	T470I	aCt	aTt	10	10	B.1.258.17	0.00104
S	470	T470I	aCt	aTt	9	9	AY.100	0.000414
S	470	T470T	acT	acC	8	9	AY.25	0.000048
S	470	T470T	acT	acG	1	9	AY.25	0.000006
S	470	T470I	aCt	aTt	9	9	AY.4.5	0.000967
S	470	T470N	aCt	aAt	9	9	B.1.1.317	0.003705
S	470	T470I	aCt	aTt	9	9	B.1.1.374	0.021378
S	470	T470I	aCt	aTt	8	8	AY.4.2	0.000174
S	470	T470I	aCt	aTt	8	8	AY.6	0.000329
S	470	T470N	aCt	aAt	7	7	AY.4.2	0.000152
S	470	T470T	acT	acC	7	7	AY.43	0.000031
S	470	T470I	aCt	aTt	7	7	AY.46.6	0.000505
S	470	T470del	ACT	---	7	7	B.1.1.7	0.000006
S	470	T470I	aCt	aTt	7	7	B.1.177	0.000092
S	470	T470T	acT	acC	7	7	C.37.1	0.018325
S	470	T470I	aCt	aTt	7	7	P.1	0.00011
S	470	T470I	aCt	aTt	6	6	AY.28	0.011342
S	470	T470I	aCt	aTt	6	6	B.1.429	0.000141
S	470	T470T	acT	acC	6	6	C.37	0.000696
S	470	T470P	Act	Cct	5	5	All	0.000001
S	470	T470V	ACT	GTG	3	5	All	0.000001
S	470	T470V	ACt	GTt	1	5	All	0
S	470	T470V	ACT	GTC	1	5	All	0
S	470	T470I	aCt	aTt	5	5	AY.119	0.000177
S	470	T470I	aCt	aTt	5	5	AY.120	0.000186
S	470	T470N	aCt	aAt	5	5	AY.3	0.00005
S	470	T470I	aCt	aTt	5	5	AY.34	0.000485
S	470	T470N	aCt	aAt	5	5	AY.4	0.000008
S	470	T470T	acT	acC	5	5	AY.45	0.000608
S	470	T470I	aCt	aTt	5	5	AY.98.1	0.000242
S	470	T470N	aCt	aAt	5	5	B.1.1	0.000091
S	470	T470T	acT	acC	5	5	B.1.627	0.010101
S	470	T470I	aCt	aTt	4	4	AY.33	0.000267
S	470	T470A	Act	Gct	4	4	AY.39	0.000099
S	470	T470I	aCt	aTt	4	4	AY.42	0.000161
S	470	T470del	ACT	---	4	4	AY.43	0.000018
S	470	T470I	aCt	aTt	4	4	AY.85	0.001709
S	470	T470T	acT	acC	4	4	B.1.1.372	0.002755
S	470	T470I	aCt	aTt	4	4	B.1.177.60	0.000874
S	470	T470I	aCt	aTt	4	4	B.1.234	0.000528
S	470	T470I	aCt	aTt	4	4	B.1.526	0.000094
S	470	T470I	aCt	aTt	4	4	B.1.637	0.000292
S	470	T470del1	acT	ac-	3	3	All	0.000001
S	470	T470A	Act	Gct	3	3	AY.113	0.000427
S	470	T470I	aCt	aTt	3	3	AY.24	0.001293
S	470	T470I	aCt	aTt	3	3	AY.26	0.000085
S	470	T470T	acT	acC	3	3	AY.3	0.00003
S	470	T470I	aCt	aTt	3	3	AY.3.1	0.000256
S	470	T470I	aCt	aTt	3	3	AY.39.1	0.000119
S	470	T470N	aCt	aAt	3	3	AY.46	0.000312
S	470	T470T	acT	acC	3	3	AY.47	0.000093
S	470	T470I	aCt	aTt	3	3	B.1.1.519	0.000119
S	470	T470T	acT	acC	3	3	B.1.177.80	0.005736
S	470	T470I	aCt	aTt	3	3	B.1.351	0.000089
S	470	T470del	ACT	---	3	3	B.1.617.2	0.000011
S	470	T470S	Act	Tct	3	3	B.1.617.2	0.000011
S	470	T470del	ACT	---	2	2		0.111111
S	470	T470K	aCT	aAG	2	2		0.111111
S	470	T470I	aCT	aTC	1	2		0.055556
S	470	T470V	ACT	GTC	1	2		0.055556
S	470	T470A	Act	Gct	1	2		0.055556
S	470	T470I	aCt	aTt	1	2		0.055556
S	470	T470A	AcT	GcC	1	2		0.055556
S	470	T470V	ACt	GTt	1	2		0.055556
S	470	T470T	acT	acC	2	2	A.1	0.000564
S	470	T470N	aCt	aAt	2	2	AD.2	0.000438
S	470	T470I	aCt	aTt	2	2	AY.120.1	0.000642
S	470	T470I	aCt	aTt	2	2	AY.20	0.000078
S	470	T470N	aCt	aAt	2	2	AY.39	0.000049
S	470	T470P	Act	Cct	2	2	AY.4	0.000003
S	470	T470S	aCt	aGt	2	2	AY.4	0.000003
S	470	T470S	Act	Tct	2	2	AY.43	0.000009
S	470	T470N	aCt	aAt	2	2	AY.44	0.000012
S	470	T470T	acT	acC	2	2	AY.44	0.000012
S	470	T470N	aCt	aAt	2	2	AY.5	0.000041
S	470	T470I	aCt	aTt	2	2	AY.61	0.00021
S	470	T470del	ACT	---	2	2	AY.75	0.000112
S	470	T470I	aCt	aTt	2	2	AY.75.1	0.000361
S	470	T470I	aCt	aTt	2	2	AY.84	0.000875
S	470	T470I	aCt	aTt	2	2	AY.86	0.00166
S	470	T470del	ACT	---	2	2	B.1	0.000018
S	470	T470T	acT	acG	1	2	B.1.1	0.000018
S	470	T470T	acT	acC	1	2	B.1.1	0.000018
S	470	T470N	aCt	aAt	2	2	B.1.1.57	0.022989
S	470	T470A	Act	Gct	2	2	B.1.177	0.000026
S	470	T470N	aCt	aAt	2	2	B.1.2	0.000018
S	470	T470T	acT	acA	2	2	B.1.232	0.001075
S	470	T470T	acT	acA	1	2	B.1.243	0.00007
S	470	T470T	acT	acC	1	2	B.1.243	0.00007
S	470	T470T	acT	acC	2	2	B.1.258	0.000133
S	470	T470I	aCt	aTt	2	2	B.1.596	0.000174
S	470	T470A	Act	Gct	2	2	B.1.617.2	0.000008
S	470	T470T	acT	acC	1	2	B.1.637	0.000073
S	470	T470T	acT	acG	1	2	B.1.637	0.000073
S	470	T470T	acT	acG	1	2	P.1	0.000016
S	470	T470T	acT	acC	1	2	P.1	0.000016
S	470	T470T	acT	acC	1	1		0.055556
S	470	T470del	ACT	---	1	1	A	0.000387
S	470	T470N	aCt	aAt	1	1	A.2.2	0.001689
S	470	T470K	aCT	aAA	1	1	A.2.5.2	0.001572
S	470	T470S	aCt	aGt	1	1	A.27	0.001656
S	470	T470N	aCt	aAt	1	1	A.27	0.001656
S	470	T470A	Act	Gct	1	1	AD.2	0.000219
S	470	T470I	aCt	aTt	1	1	AE.8	0.000489
S	470	T470M	aCT	aTG	1	1	All	0
S	470	T470del2	aCT	a--	1	1	All	0
S	470	T470L	ACT	CTG	1	1	All	0
S	470	T470Y	ACt	TAt	1	1	All	0
S	470	T470D	ACT	GAC	1	1	All	0
S	470	T470I	aCt	aTt	1	1	AU.2	0.002421
S	470	T470T	acT	acC	1	1	AY.1	0.000396
S	470	T470T	acT	acC	1	1	AY.100	0.000046
S	470	T470N	aCt	aAt	1	1	AY.101	0.00049
S	470	T470N	aCt	aAt	1	1	AY.102	0.000027
S	470	T470del	ACT	---	1	1	AY.102	0.000027
S	470	T470A	Act	Gct	1	1	AY.103	0.000006
S	470	T470T	acT	acC	1	1	AY.103	0.000006
S	470	T470N	aCt	aAt	1	1	AY.103	0.000006
S	470	T470del	ACT	---	1	1	AY.107	0.000466
S	470	T470del	ACT	---	1	1	AY.108	0.001103
S	470	T470N	aCt	aAt	1	1	AY.110	0.000113
S	470	T470I	aCt	aTt	1	1	AY.111	0.000183
S	470	T470I	aCt	aTt	1	1	AY.113	0.000142
S	470	T470del	ACT	---	1	1	AY.113	0.000142
S	470	T470I	aCt	aTt	1	1	AY.116.1	0.000311
S	470	T470I	aCt	aTt	1	1	AY.118	0.000063
S	470	T470T	acT	acC	1	1	AY.119	0.000035
S	470	T470N	aCt	aAt	1	1	AY.119	0.000035
S	470	T470S	aCt	aGt	1	1	AY.120	0.000037
S	470	T470S	aCt	aGt	1	1	AY.14	0.000088
S	470	T470I	aCt	aTt	1	1	AY.16	0.00038
S	470	T470T	acT	acC	1	1	AY.16.1	0.00047
S	470	T470A	Act	Gct	1	1	AY.20	0.000039
S	470	T470N	aCt	aAt	1	1	AY.20	0.000039
S	470	T470I	aCt	aTt	1	1	AY.23	0.00007
S	470	T470T	acT	acC	1	1	AY.23	0.00007
S	470	T470S	Act	Tct	1	1	AY.23	0.00007
S	470	T470N	aCt	aAt	1	1	AY.25	0.000006
S	470	T470A	Act	Gct	1	1	AY.26	0.000028
S	470	T470S	aCt	aGt	1	1	AY.26	0.000028
S	470	T470T	acT	acG	1	1	AY.27	0.000065
S	470	T470T	acT	acC	1	1	AY.29	0.000016
S	470	T470I	aCt	aTt	1	1	AY.29	0.000016
S	470	T470del	ACT	---	1	1	AY.3	0.00001
S	470	T470S	Act	Tct	1	1	AY.30	0.000396
S	470	T470S	Act	Tct	1	1	AY.33	0.000067
S	470	T470T	acT	acC	1	1	AY.33	0.000067
S	470	T470A	Act	Gct	1	1	AY.33	0.000067
S	470	T470I	aCt	aTt	1	1	AY.36	0.000148
S	470	T470I	aCt	aTt	1	1	AY.39	0.000025
S	470	T470A	Act	Gct	1	1	AY.39.1	0.00004
S	470	T470del	ACT	---	1	1	AY.4	0.000002
S	470	T470T	acT	acC	1	1	AY.4.2.1	0.000149
S	470	T470del	ACT	---	1	1	AY.42	0.00004
S	470	T470T	acT	acC	1	1	AY.42	0.00004
S	470	T470A	Act	Gct	1	1	AY.42	0.00004
S	470	T470A	Act	Gct	1	1	AY.43	0.000004
S	470	T470D	ACT	GAC	1	1	AY.43	0.000004
S	470	T470V	ACT	GTG	1	1	AY.43	0.000004
S	470	T470P	Act	Cct	1	1	AY.43	0.000004
S	470	T470del	ACT	---	1	1	AY.44	0.000006
S	470	T470V	ACT	GTG	1	1	AY.44	0.000006
S	470	T470I	aCt	aTt	1	1	AY.45	0.000122
S	470	T470del	ACT	---	1	1	AY.45	0.000122
S	470	T470I	aCt	aTt	1	1	AY.46.5	0.000198
S	470	T470I	aCt	aTt	1	1	AY.47	0.000031
S	470	T470S	aCt	aGt	1	1	AY.47	0.000031
S	470	T470S	Act	Tct	1	1	AY.5	0.000021
S	470	T470I	aCt	aTt	1	1	AY.5.3	0.000337
S	470	T470del	ACT	---	1	1	AY.54	0.000095
S	470	T470I	aCt	aTt	1	1	AY.55	0.000917
S	470	T470N	aCt	aAt	1	1	AY.59	0.00053
S	470	T470del	ACT	---	1	1	AY.67	0.000464
S	470	T470T	acT	acC	1	1	AY.7.1	0.000113
S	470	T470S	aCt	aGt	1	1	AY.7.1	0.000113
S	470	T470I	aCt	aTt	1	1	AY.75	0.000056
S	470	T470N	aCt	aAt	1	1	AY.75	0.000056
S	470	T470T	acT	acC	1	1	AY.75.1	0.00018
S	470	T470N	aCt	aAt	1	1	AY.75.1	0.00018
S	470	T470I	aCt	aTt	1	1	AY.76	0.004831
S	470	T470N	aCt	aAt	1	1	AY.84	0.000437
S	470	T470del	ACT	---	1	1	AY.84	0.000437
S	470	T470T	acT	acC	1	1	AY.87	0.000833
S	470	T470N	aCt	aAt	1	1	AY.9	0.000068
S	470	T470T	acT	acA	1	1	AY.9.2	0.000037
S	470	T470Y	ACt	TAt	1	1	AY.9.2	0.000037
S	470	T470I	aCt	aTt	1	1	AY.9.2	0.000037
S	470	T470I	aCt	aTt	1	1	AY.93	0.000273
S	470	T470I	aCt	aTt	1	1	AY.95	0.000761
S	470	T470V	ACT	GTG	1	1	AY.99	0.001049
S	470	T470I	aCt	aTt	1	1	AY.99.2	0.000092
S	470	T470del1	acT	ac-	1	1	B.1	0.000009
S	470	T470I	aCt	aTt	1	1	B.1.1	0.000018
S	470	T470I	aCt	aTt	1	1	B.1.1.1	0.000327
S	470	T470I	aCt	aTt	1	1	B.1.1.10	0.001115
S	470	T470I	aCt	aTt	1	1	B.1.1.164	0.005155
S	470	T470T	acT	acC	1	1	B.1.1.216	0.00089
S	470	T470I	aCt	aTt	1	1	B.1.1.230	0.009174
S	470	T470S	Act	Tct	1	1	B.1.1.28	0.000311
S	470	T470I	aCt	aTt	1	1	B.1.1.284	0.000107
S	470	T470del	ACT	---	1	1	B.1.1.306	0.000438
S	470	T470A	Act	Gct	1	1	B.1.1.335	0.012987
S	470	T470N	aCt	aAt	1	1	B.1.1.376	0.005952
S	470	T470T	acT	acC	1	1	B.1.1.411	0.014706
S	470	T470T	acT	acA	1	1	B.1.1.413	0.006897
S	470	T470N	aCt	aAt	1	1	B.1.1.44	0.00241
S	470	T470I	aCt	aTt	1	1	B.1.1.445	0.037037
S	470	T470T	acT	acC	1	1	B.1.1.519	0.00004
S	470	T470S	Act	Tct	1	1	B.1.1.7	0.000001
S	470	T470del1	acT	ac-	1	1	B.1.1.7	0.000001
S	470	T470P	Act	Cct	1	1	B.1.1.7	0.000001
S	470	T470I	aCt	aTt	1	1	B.1.126	0.001276
S	470	T470T	acT	acC	1	1	B.1.139	0.000733
S	470	T470S	Act	Tct	1	1	B.1.160	0.000031
S	470	T470N	aCT	aAC	1	1	B.1.177	0.000013
S	470	T470S	Act	Tct	1	1	B.1.177.21	0.000076
S	470	T470del	ACT	---	1	1	B.1.177.4	0.000211
S	470	T470I	aCt	aTt	1	1	B.1.177.54	0.000606
S	470	T470I	aCt	aTt	1	1	B.1.177.57	0.000281
S	470	T470T	acT	acC	1	1	B.1.177.81	0.000189
S	470	T470del	ACT	---	1	1	B.1.2	0.000009
S	470	T470A	Act	Gct	1	1	B.1.2	0.000009
S	470	T470S	Act	Tct	1	1	B.1.2	0.000009
S	470	T470N	aCt	aAt	1	1	B.1.203	0.0625
S	470	T470del1	acT	ac-	1	1	B.1.234	0.000132
S	470	T470I	aCt	aTt	1	1	B.1.239	0.001221
S	470	T470I	aCt	aTt	1	1	B.1.240	0.000216
S	470	T470T	acT	acC	1	1	B.1.240	0.000216
S	470	T470N	aCT	aAC	1	1	B.1.258	0.000067
S	470	T470I	aCt	aTt	1	1	B.1.258	0.000067
S	470	T470T	acT	acA	1	1	B.1.265	0.001271
S	470	T470T	acT	acC	1	1	B.1.311	0.000275
S	470	T470I	aCt	aTt	1	1	B.1.350	0.002933
S	470	T470del	ACT	---	1	1	B.1.351	0.00003
S	470	T470A	Act	Gct	1	1	B.1.351	0.00003
S	470	T470I	aCt	aTt	1	1	B.1.351.2	0.000303
S	470	T470T	acT	acC	1	1	B.1.356	0.001727
S	470	T470T	acT	acC	1	1	B.1.36.26	0.002857
S	470	T470N	aCt	aAt	1	1	B.1.36.36	0.000602
S	470	T470I	aCt	aTt	1	1	B.1.369	0.000285
S	470	T470L	ACT	CTG	1	1	B.1.377	0.004566
S	470	T470T	acT	acC	1	1	B.1.396	0.000706
S	470	T470I	aCt	aTt	1	1	B.1.399	0.001934
S	470	T470T	acT	acC	1	1	B.1.416.1	0.001563
S	470	T470N	aCt	aAt	1	1	B.1.427	0.00005
S	470	T470I	aCt	aTt	1	1	B.1.427	0.00005
S	470	T470T	acT	acC	1	1	B.1.429	0.000024
S	470	T470A	Act	Gct	1	1	B.1.429	0.000024
S	470	T470T	acT	acC	1	1	B.1.456	0.003268
S	470	T470N	aCt	aAt	1	1	B.1.499	0.00105
S	470	T470del	ACT	---	1	1	B.1.526	0.000024
S	470	T470K	aCT	aAA	1	1	B.1.526	0.000024
S	470	T470I	aCt	aTt	1	1	B.1.527	0.003704
S	470	T470T	acT	acA	1	1	B.1.537	0.02
S	470	T470I	aCt	aTt	1	1	B.1.561	0.000397
S	470	T470I	aCt	aTt	1	1	B.1.577	0.000687
S	470	T470I	aCt	aTt	1	1	B.1.582	0.000491
S	470	T470I	aCt	aTt	1	1	B.1.590	0.004545
S	470	T470I	aCt	aTt	1	1	B.1.595	0.000261
S	470	T470T	acT	acG	1	1	B.1.596	0.000087
S	470	T470N	aCt	aAt	1	1	B.1.596	0.000087
S	470	T470M	aCT	aTG	1	1	B.1.617.2	0.000004
S	470	T470P	Act	Cct	1	1	B.1.617.2	0.000004
S	470	T470del2	aCT	a--	1	1	B.1.617.2	0.000004
S	470	T470del	ACT	---	1	1	B.1.620	0.000946
S	470	T470I	aCt	aTt	1	1	B.1.621	0.000089
S	470	T470T	acT	acA	1	1	B.1.630	0.005236
S	470	T470T	acT	acC	1	1	C.14	0.004329
S	470	T470A	Act	Gct	1	1	C.18	0.002591
S	470	T470I	aCt	aTt	1	1	C.37.1	0.002618
S	470	T470T	acT	acC	1	1	D.2	0.000075
S	470	T470S	Act	Tct	1	1	D.2	0.000075
S	470	T470del	ACT	---	1	1	P.1.1	0.000318
S	470	T470S	Act	Tct	1	1	P.1.14	0.000048
S	470	T470N	aCt	aAt	1	1	P.1.16	0.000374
S	470	T470N	aCt	aAt	1	1	P.1.7	0.000319
S	470	T470N	aCt	aAt	1	1	Q.1	0.000126
S	470	T470T	acT	acC	1	1	Q.4	0.000455
S	470	T470T	acT	acA	1	1	Q.7	0.001111
S	470	T470N	aCt	aAt	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.