CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 470

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S470T470InonsynaCtaTt8188170.99877822970-22972
S470T470InonsynaCTaTC81810.0012224922970-22972
S470T470TsynacTacC7397000.94722622970-22972
S470T470TsynacTacA739270.036535922970-22972
S470T470TsynacTacG739120.016238222970-22972
S470T470NnonsynaCtaAt6066040.996722970-22972
S470T470NnonsynaCTaAC60620.0033003322970-22972
S470T470KnonsynaCTaAA2502480.99222970-22972
S470T470KnonsynaCTaAG25020.00822970-22972
S470T470AnonsynActGct48470.97916722970-22972
S470T470AnonsynAcTGcC4810.020833322970-22972
S470T470deldelACT---4040122970-22972
S470T470SnonsynActTct24160.66666722970-22972
S470T470SnonsynaCtaGt2480.33333322970-22972
S470T470PnonsynActCct55122970-22972
S470T470VnonsynACTGTG530.622970-22972
S470T470VnonsynACTGTC510.222970-22972
S470T470VnonsynACtGTt510.222970-22972
S470T470del1delacTac-33122970-22972
S470T470YnonsynACtTAt11122970-22972
S470T470DnonsynACTGAC11122970-22972
S470T470del2delaCTa--11122970-22972
S470T470LnonsynACTCTG11122970-22972
S470T470MnonsynaCTaTG11122970-22972

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S470T470IaCtaTt817818All0.000156
S470T470IaCTaTC1818All0
S470T470TacTacC700739All0.000134
S470T470TacTacA27739All0.000005
S470T470TacTacG12739All0.000002
S470T470NaCtaAt604606All0.000116
S470T470NaCTaAC2606All0
S470T470TacTacC503511AY.40.000783
S470T470TacTacA8511AY.40.000012
S470T470KaCTaAA248250All0.000047
S470T470KaCTaAG2250All0
S470T470KaCTaAA246246B.10.002253
S470T470IaCtaTt208208AY.40.000324
S470T470NaCtaAt198198P.1.80.947368
S470T470IaCtaTt162162B.1.1.70.000145
S470T470NaCtaAt8080P.10.00126
S470T470NaCtaAt6767B.1.617.20.000252
S470T470NaCtaAt4949AY.430.000217
S470T470AActGct4748All0.000009
S470T470AAcTGcC148All0
S470T470IaCtaTt4343B.1.617.20.000162
S470T470delACT---4040All0.000008
S470T470TacTacC3737B.1.20.000326
S470T470IaCtaTt3434AY.440.000207
S470T470NaCtaAt3434B.1.36.270.025954
S470T470IaCtaTt3131AY.430.000137
S470T470NaCtaAt3030B.1.360.004377
S470T470NaCtaAt2525B.10.000229
S470T470TacTacC2425B.1.617.20.00009
S470T470TacTacA125B.1.617.20.000004
S470T470SActTct1624All0.000003
S470T470SaCtaGt824All0.000002
S470T470IaCtaTt2323AY.1030.000143
S470T470NaCtaAt2222B.1.1.70.00002
S470T470TacTacC1222B.1.1.70.000011
S470T470TacTacG522B.1.1.70.000004
S470T470TacTacA522B.1.1.70.000004
S470T470IaCtaTt2121AY.250.000126
S470T470NaCtaAt1818AY.290.000284
S470T470IaCtaTt1717AY.50.000351
S470T470TacTacC1616B.1.3290.009721
S470T470IaCtaTt1515B.1.20.000132
S470T470IaCtaTt1313B.10.000119
S470T470IaCtaTt1212AY.1020.000318
S470T470AActGct1212B.1.10.000218
S470T470IaCtaTt1212C.370.001393
S470T470TacTacC1011AY.260.000283
S470T470TacTacA111AY.260.000028
S470T470IaCtaTt1111AY.30.000109
S470T470TacTacC711B.10.000064
S470T470TacTacA311B.10.000027
S470T470TacTacG111B.10.000009
S470T470NaCtaAt1010AY.29.10.002205
S470T470AActGct1010B.1.1.70.000009
S470T470IaCtaTt1010B.1.258.170.00104
S470T470IaCtaTt99AY.1000.000414
S470T470TacTacC89AY.250.000048
S470T470TacTacG19AY.250.000006
S470T470IaCtaTt99AY.4.50.000967
S470T470NaCtaAt99B.1.1.3170.003705
S470T470IaCtaTt99B.1.1.3740.021378
S470T470IaCtaTt88AY.4.20.000174
S470T470IaCtaTt88AY.60.000329
S470T470NaCtaAt77AY.4.20.000152
S470T470TacTacC77AY.430.000031
S470T470IaCtaTt77AY.46.60.000505
S470T470delACT---77B.1.1.70.000006
S470T470IaCtaTt77B.1.1770.000092
S470T470TacTacC77C.37.10.018325
S470T470IaCtaTt77P.10.00011
S470T470IaCtaTt66AY.280.011342
S470T470IaCtaTt66B.1.4290.000141
S470T470TacTacC66C.370.000696
S470T470PActCct55All0.000001
S470T470VACTGTG35All0.000001
S470T470VACtGTt15All0
S470T470VACTGTC15All0
S470T470IaCtaTt55AY.1190.000177
S470T470IaCtaTt55AY.1200.000186
S470T470NaCtaAt55AY.30.00005
S470T470IaCtaTt55AY.340.000485
S470T470NaCtaAt55AY.40.000008
S470T470TacTacC55AY.450.000608
S470T470IaCtaTt55AY.98.10.000242
S470T470NaCtaAt55B.1.10.000091
S470T470TacTacC55B.1.6270.010101
S470T470IaCtaTt44AY.330.000267
S470T470AActGct44AY.390.000099
S470T470IaCtaTt44AY.420.000161
S470T470delACT---44AY.430.000018
S470T470IaCtaTt44AY.850.001709
S470T470TacTacC44B.1.1.3720.002755
S470T470IaCtaTt44B.1.177.600.000874
S470T470IaCtaTt44B.1.2340.000528
S470T470IaCtaTt44B.1.5260.000094
S470T470IaCtaTt44B.1.6370.000292
S470T470del1acTac-33All0.000001
S470T470AActGct33AY.1130.000427
S470T470IaCtaTt33AY.240.001293
S470T470IaCtaTt33AY.260.000085
S470T470TacTacC33AY.30.00003
S470T470IaCtaTt33AY.3.10.000256
S470T470IaCtaTt33AY.39.10.000119
S470T470NaCtaAt33AY.460.000312
S470T470TacTacC33AY.470.000093
S470T470IaCtaTt33B.1.1.5190.000119
S470T470TacTacC33B.1.177.800.005736
S470T470IaCtaTt33B.1.3510.000089
S470T470delACT---33B.1.617.20.000011
S470T470SActTct33B.1.617.20.000011
S470T470delACT---220.111111
S470T470KaCTaAG220.111111
S470T470IaCTaTC120.055556
S470T470VACTGTC120.055556
S470T470AActGct120.055556
S470T470IaCtaTt120.055556
S470T470AAcTGcC120.055556
S470T470VACtGTt120.055556
S470T470TacTacC22A.10.000564
S470T470NaCtaAt22AD.20.000438
S470T470IaCtaTt22AY.120.10.000642
S470T470IaCtaTt22AY.200.000078
S470T470NaCtaAt22AY.390.000049
S470T470PActCct22AY.40.000003
S470T470SaCtaGt22AY.40.000003
S470T470SActTct22AY.430.000009
S470T470NaCtaAt22AY.440.000012
S470T470TacTacC22AY.440.000012
S470T470NaCtaAt22AY.50.000041
S470T470IaCtaTt22AY.610.00021
S470T470delACT---22AY.750.000112
S470T470IaCtaTt22AY.75.10.000361
S470T470IaCtaTt22AY.840.000875
S470T470IaCtaTt22AY.860.00166
S470T470delACT---22B.10.000018
S470T470TacTacG12B.1.10.000018
S470T470TacTacC12B.1.10.000018
S470T470NaCtaAt22B.1.1.570.022989
S470T470AActGct22B.1.1770.000026
S470T470NaCtaAt22B.1.20.000018
S470T470TacTacA22B.1.2320.001075
S470T470TacTacA12B.1.2430.00007
S470T470TacTacC12B.1.2430.00007
S470T470TacTacC22B.1.2580.000133
S470T470IaCtaTt22B.1.5960.000174
S470T470AActGct22B.1.617.20.000008
S470T470TacTacC12B.1.6370.000073
S470T470TacTacG12B.1.6370.000073
S470T470TacTacG12P.10.000016
S470T470TacTacC12P.10.000016
S470T470TacTacC110.055556
S470T470delACT---11A0.000387
S470T470NaCtaAt11A.2.20.001689
S470T470KaCTaAA11A.2.5.20.001572
S470T470SaCtaGt11A.270.001656
S470T470NaCtaAt11A.270.001656
S470T470AActGct11AD.20.000219
S470T470IaCtaTt11AE.80.000489
S470T470MaCTaTG11All0
S470T470del2aCTa--11All0
S470T470LACTCTG11All0
S470T470YACtTAt11All0
S470T470DACTGAC11All0
S470T470IaCtaTt11AU.20.002421
S470T470TacTacC11AY.10.000396
S470T470TacTacC11AY.1000.000046
S470T470NaCtaAt11AY.1010.00049
S470T470NaCtaAt11AY.1020.000027
S470T470delACT---11AY.1020.000027
S470T470AActGct11AY.1030.000006
S470T470TacTacC11AY.1030.000006
S470T470NaCtaAt11AY.1030.000006
S470T470delACT---11AY.1070.000466
S470T470delACT---11AY.1080.001103
S470T470NaCtaAt11AY.1100.000113
S470T470IaCtaTt11AY.1110.000183
S470T470IaCtaTt11AY.1130.000142
S470T470delACT---11AY.1130.000142
S470T470IaCtaTt11AY.116.10.000311
S470T470IaCtaTt11AY.1180.000063
S470T470TacTacC11AY.1190.000035
S470T470NaCtaAt11AY.1190.000035
S470T470SaCtaGt11AY.1200.000037
S470T470SaCtaGt11AY.140.000088
S470T470IaCtaTt11AY.160.00038
S470T470TacTacC11AY.16.10.00047
S470T470AActGct11AY.200.000039
S470T470NaCtaAt11AY.200.000039
S470T470IaCtaTt11AY.230.00007
S470T470TacTacC11AY.230.00007
S470T470SActTct11AY.230.00007
S470T470NaCtaAt11AY.250.000006
S470T470AActGct11AY.260.000028
S470T470SaCtaGt11AY.260.000028
S470T470TacTacG11AY.270.000065
S470T470TacTacC11AY.290.000016
S470T470IaCtaTt11AY.290.000016
S470T470delACT---11AY.30.00001
S470T470SActTct11AY.300.000396
S470T470SActTct11AY.330.000067
S470T470TacTacC11AY.330.000067
S470T470AActGct11AY.330.000067
S470T470IaCtaTt11AY.360.000148
S470T470IaCtaTt11AY.390.000025
S470T470AActGct11AY.39.10.00004
S470T470delACT---11AY.40.000002
S470T470TacTacC11AY.4.2.10.000149
S470T470delACT---11AY.420.00004
S470T470TacTacC11AY.420.00004
S470T470AActGct11AY.420.00004
S470T470AActGct11AY.430.000004
S470T470DACTGAC11AY.430.000004
S470T470VACTGTG11AY.430.000004
S470T470PActCct11AY.430.000004
S470T470delACT---11AY.440.000006
S470T470VACTGTG11AY.440.000006
S470T470IaCtaTt11AY.450.000122
S470T470delACT---11AY.450.000122
S470T470IaCtaTt11AY.46.50.000198
S470T470IaCtaTt11AY.470.000031
S470T470SaCtaGt11AY.470.000031
S470T470SActTct11AY.50.000021
S470T470IaCtaTt11AY.5.30.000337
S470T470delACT---11AY.540.000095
S470T470IaCtaTt11AY.550.000917
S470T470NaCtaAt11AY.590.00053
S470T470delACT---11AY.670.000464
S470T470TacTacC11AY.7.10.000113
S470T470SaCtaGt11AY.7.10.000113
S470T470IaCtaTt11AY.750.000056
S470T470NaCtaAt11AY.750.000056
S470T470TacTacC11AY.75.10.00018
S470T470NaCtaAt11AY.75.10.00018
S470T470IaCtaTt11AY.760.004831
S470T470NaCtaAt11AY.840.000437
S470T470delACT---11AY.840.000437
S470T470TacTacC11AY.870.000833
S470T470NaCtaAt11AY.90.000068
S470T470TacTacA11AY.9.20.000037
S470T470YACtTAt11AY.9.20.000037
S470T470IaCtaTt11AY.9.20.000037
S470T470IaCtaTt11AY.930.000273
S470T470IaCtaTt11AY.950.000761
S470T470VACTGTG11AY.990.001049
S470T470IaCtaTt11AY.99.20.000092
S470T470del1acTac-11B.10.000009
S470T470IaCtaTt11B.1.10.000018
S470T470IaCtaTt11B.1.1.10.000327
S470T470IaCtaTt11B.1.1.100.001115
S470T470IaCtaTt11B.1.1.1640.005155
S470T470TacTacC11B.1.1.2160.00089
S470T470IaCtaTt11B.1.1.2300.009174
S470T470SActTct11B.1.1.280.000311
S470T470IaCtaTt11B.1.1.2840.000107
S470T470delACT---11B.1.1.3060.000438
S470T470AActGct11B.1.1.3350.012987
S470T470NaCtaAt11B.1.1.3760.005952
S470T470TacTacC11B.1.1.4110.014706
S470T470TacTacA11B.1.1.4130.006897
S470T470NaCtaAt11B.1.1.440.00241
S470T470IaCtaTt11B.1.1.4450.037037
S470T470TacTacC11B.1.1.5190.00004
S470T470SActTct11B.1.1.70.000001
S470T470del1acTac-11B.1.1.70.000001
S470T470PActCct11B.1.1.70.000001
S470T470IaCtaTt11B.1.1260.001276
S470T470TacTacC11B.1.1390.000733
S470T470SActTct11B.1.1600.000031
S470T470NaCTaAC11B.1.1770.000013
S470T470SActTct11B.1.177.210.000076
S470T470delACT---11B.1.177.40.000211
S470T470IaCtaTt11B.1.177.540.000606
S470T470IaCtaTt11B.1.177.570.000281
S470T470TacTacC11B.1.177.810.000189
S470T470delACT---11B.1.20.000009
S470T470AActGct11B.1.20.000009
S470T470SActTct11B.1.20.000009
S470T470NaCtaAt11B.1.2030.0625
S470T470del1acTac-11B.1.2340.000132
S470T470IaCtaTt11B.1.2390.001221
S470T470IaCtaTt11B.1.2400.000216
S470T470TacTacC11B.1.2400.000216
S470T470NaCTaAC11B.1.2580.000067
S470T470IaCtaTt11B.1.2580.000067
S470T470TacTacA11B.1.2650.001271
S470T470TacTacC11B.1.3110.000275
S470T470IaCtaTt11B.1.3500.002933
S470T470delACT---11B.1.3510.00003
S470T470AActGct11B.1.3510.00003
S470T470IaCtaTt11B.1.351.20.000303
S470T470TacTacC11B.1.3560.001727
S470T470TacTacC11B.1.36.260.002857
S470T470NaCtaAt11B.1.36.360.000602
S470T470IaCtaTt11B.1.3690.000285
S470T470LACTCTG11B.1.3770.004566
S470T470TacTacC11B.1.3960.000706
S470T470IaCtaTt11B.1.3990.001934
S470T470TacTacC11B.1.416.10.001563
S470T470NaCtaAt11B.1.4270.00005
S470T470IaCtaTt11B.1.4270.00005
S470T470TacTacC11B.1.4290.000024
S470T470AActGct11B.1.4290.000024
S470T470TacTacC11B.1.4560.003268
S470T470NaCtaAt11B.1.4990.00105
S470T470delACT---11B.1.5260.000024
S470T470KaCTaAA11B.1.5260.000024
S470T470IaCtaTt11B.1.5270.003704
S470T470TacTacA11B.1.5370.02
S470T470IaCtaTt11B.1.5610.000397
S470T470IaCtaTt11B.1.5770.000687
S470T470IaCtaTt11B.1.5820.000491
S470T470IaCtaTt11B.1.5900.004545
S470T470IaCtaTt11B.1.5950.000261
S470T470TacTacG11B.1.5960.000087
S470T470NaCtaAt11B.1.5960.000087
S470T470MaCTaTG11B.1.617.20.000004
S470T470PActCct11B.1.617.20.000004
S470T470del2aCTa--11B.1.617.20.000004
S470T470delACT---11B.1.6200.000946
S470T470IaCtaTt11B.1.6210.000089
S470T470TacTacA11B.1.6300.005236
S470T470TacTacC11C.140.004329
S470T470AActGct11C.180.002591
S470T470IaCtaTt11C.37.10.002618
S470T470TacTacC11D.20.000075
S470T470SActTct11D.20.000075
S470T470delACT---11P.1.10.000318
S470T470SActTct11P.1.140.000048
S470T470NaCtaAt11P.1.160.000374
S470T470NaCtaAt11P.1.70.000319
S470T470NaCtaAt11Q.10.000126
S470T470TacTacC11Q.40.000455
S470T470TacTacA11Q.70.001111
S470T470NaCtaAt11Q.80.000165