CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 460 | N460S | nonsyn | aAt | aGt | 834 | 831 | 0.996403 | 22940-22942 | |
S | 460 | N460S | nonsyn | AAT | TCC | 834 | 2 | 0.00239808 | 22940-22942 | |
S | 460 | N460S | nonsyn | aAT | aGC | 834 | 1 | 0.00119904 | 22940-22942 | |
S | 460 | N460N | syn | aaT | aaC | 305 | 305 | 1 | 22940-22942 | |
S | 460 | N460I | nonsyn | aAt | aTt | 79 | 79 | 1 | 22940-22942 | |
S | 460 | N460K | nonsyn | aaT | aaG | 73 | 58 | 0.794521 | 22940-22942 | |
S | 460 | N460K | nonsyn | aaT | aaA | 73 | 15 | 0.205479 | 22940-22942 | |
S | 460 | N460del | del | AAT | --- | 48 | 48 | 1 | 22940-22942 | |
S | 460 | N460Y | nonsyn | Aat | Tat | 45 | 45 | 1 | 22940-22942 | |
S | 460 | N460T | nonsyn | aAt | aCt | 37 | 37 | 1 | 22940-22942 | |
S | 460 | N460D | nonsyn | Aat | Gat | 35 | 33 | 0.942857 | 22940-22942 | |
S | 460 | N460D | nonsyn | AaT | GaC | 35 | 2 | 0.0571429 | 22940-22942 | |
S | 460 | N460H | nonsyn | Aat | Cat | 10 | 10 | 1 | 22940-22942 | |
S | 460 | N460C | nonsyn | AAT | TGC | 4 | 3 | 0.75 | 22940-22942 | |
S | 460 | N460G | nonsyn | AAT | GGC | 4 | 3 | 0.75 | 22940-22942 | |
S | 460 | N460del1 | del | Aat | -at | 4 | 2 | 0.5 | 22940-22942 | |
S | 460 | N460del1 | del | aaT | aa- | 4 | 1 | 0.25 | 22940-22942 | |
S | 460 | N460G | nonsyn | AAt | GGt | 4 | 1 | 0.25 | 22940-22942 | |
S | 460 | N460C | nonsyn | AAt | TGt | 4 | 1 | 0.25 | 22940-22942 | |
S | 460 | N460del1 | del | AAt | -Ct | 4 | 1 | 0.25 | 22940-22942 | |
S | 460 | N460A | nonsyn | AAT | GCC | 2 | 2 | 1 | 22940-22942 | |
S | 460 | N460P | nonsyn | AAt | CCt | 2 | 1 | 0.5 | 22940-22942 | |
S | 460 | N460P | nonsyn | AAT | CCA | 2 | 1 | 0.5 | 22940-22942 | |
S | 460 | N460R | nonsyn | AAt | CGt | 1 | 1 | 1 | 22940-22942 | |
S | 460 | N460E | nonsyn | AaT | GaG | 1 | 1 | 1 | 22940-22942 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 460 | N460S | aAt | aGt | 831 | 834 | All | 0.000159 |
S | 460 | N460S | AAT | TCC | 2 | 834 | All | 0 |
S | 460 | N460S | aAT | aGC | 1 | 834 | All | 0 |
S | 460 | N460S | aAt | aGt | 701 | 701 | AY.4 | 0.001091 |
S | 460 | N460N | aaT | aaC | 305 | 305 | All | 0.000058 |
S | 460 | N460N | aaT | aaC | 102 | 102 | B.1 | 0.000934 |
S | 460 | N460I | aAt | aTt | 79 | 79 | All | 0.000015 |
S | 460 | N460K | aaT | aaG | 58 | 73 | All | 0.000011 |
S | 460 | N460K | aaT | aaA | 15 | 73 | All | 0.000003 |
S | 460 | N460N | aaT | aaC | 72 | 72 | B.1.1.7 | 0.000064 |
S | 460 | N460del | AAT | --- | 48 | 48 | All | 0.000009 |
S | 460 | N460I | aAt | aTt | 46 | 46 | B.1.1 | 0.000834 |
S | 460 | N460Y | Aat | Tat | 45 | 45 | All | 0.000009 |
S | 460 | N460N | aaT | aaC | 38 | 38 | P.1 | 0.000599 |
S | 460 | N460T | aAt | aCt | 37 | 37 | All | 0.000007 |
S | 460 | N460D | Aat | Gat | 33 | 35 | All | 0.000006 |
S | 460 | N460D | AaT | GaC | 2 | 35 | All | 0 |
S | 460 | N460S | aAt | aGt | 19 | 19 | AY.47 | 0.000591 |
S | 460 | N460K | aaT | aaG | 10 | 13 | B.1.638 | 0.526316 |
S | 460 | N460K | aaT | aaA | 3 | 13 | B.1.638 | 0.157895 |
S | 460 | N460N | aaT | aaC | 12 | 12 | AY.4 | 0.000019 |
S | 460 | N460K | aaT | aaG | 12 | 12 | Q.7 | 0.013333 |
S | 460 | N460S | aAt | aGt | 11 | 11 | AY.25 | 0.000066 |
S | 460 | N460H | Aat | Cat | 10 | 10 | All | 0.000002 |
S | 460 | N460S | aAt | aGt | 10 | 10 | AY.103 | 0.000062 |
S | 460 | N460S | aAt | aGt | 10 | 10 | B.1.617.2 | 0.000038 |
S | 460 | N460Y | Aat | Tat | 9 | 9 | AY.103 | 0.000056 |
S | 460 | N460T | aAt | aCt | 9 | 9 | AY.39.1 | 0.000357 |
S | 460 | N460del | AAT | --- | 9 | 9 | AY.43 | 0.00004 |
S | 460 | N460S | aAt | aGt | 9 | 9 | B.1.1.354 | 0.039474 |
S | 460 | N460S | aAt | aGt | 9 | 9 | B.1.36 | 0.001313 |
S | 460 | N460del | AAT | --- | 8 | 8 | B.1.1.7 | 0.000007 |
S | 460 | N460Y | Aat | Tat | 7 | 7 | AY.102 | 0.000186 |
S | 460 | N460D | Aat | Gat | 7 | 7 | AY.103 | 0.000043 |
S | 460 | N460K | aaT | aaA | 7 | 7 | AY.44 | 0.000043 |
S | 460 | N460S | aAt | aGt | 7 | 7 | B.1.1.7 | 0.000006 |
S | 460 | N460Y | Aat | Tat | 7 | 7 | B.1.617.2 | 0.000026 |
S | 460 | N460N | aaT | aaC | 6 | 6 | AY.103 | 0.000037 |
S | 460 | N460N | aaT | aaC | 6 | 6 | AY.3 | 0.00006 |
S | 460 | N460D | Aat | Gat | 6 | 6 | AY.44 | 0.000037 |
S | 460 | N460K | aaT | aaG | 6 | 6 | B.1.1.7 | 0.000005 |
S | 460 | N460N | aaT | aaC | 6 | 6 | B.1.617.2 | 0.000023 |
S | 460 | N460K | aaT | aaG | 4 | 5 | AY.43 | 0.000018 |
S | 460 | N460K | aaT | aaA | 1 | 5 | AY.43 | 0.000004 |
S | 460 | N460K | aaT | aaG | 5 | 5 | B.1.2 | 0.000044 |
S | 460 | N460G | AAT | GGC | 3 | 4 | 0.166667 | |
S | 460 | N460S | AAT | TCC | 2 | 4 | 0.111111 | |
S | 460 | N460G | AAt | GGt | 1 | 4 | 0.055556 | |
S | 460 | N460S | aAT | aGC | 1 | 4 | 0.055556 | |
S | 460 | N460S | aAt | aGt | 1 | 4 | 0.055556 | |
S | 460 | N460G | AAT | GGC | 3 | 4 | All | 0.000001 |
S | 460 | N460C | AAT | TGC | 3 | 4 | All | 0.000001 |
S | 460 | N460del1 | Aat | -at | 2 | 4 | All | 0 |
S | 460 | N460C | AAt | TGt | 1 | 4 | All | 0 |
S | 460 | N460del1 | aaT | aa- | 1 | 4 | All | 0 |
S | 460 | N460G | AAt | GGt | 1 | 4 | All | 0 |
S | 460 | N460del1 | AAt | -Ct | 1 | 4 | All | 0 |
S | 460 | N460T | aAt | aCt | 4 | 4 | AY.103 | 0.000025 |
S | 460 | N460S | aAt | aGt | 4 | 4 | AY.3 | 0.00004 |
S | 460 | N460N | aaT | aaC | 4 | 4 | AY.43 | 0.000018 |
S | 460 | N460del | AAT | --- | 4 | 4 | B.1 | 0.000037 |
S | 460 | N460I | aAt | aTt | 4 | 4 | B.1.1.7 | 0.000004 |
S | 460 | N460del | AAT | --- | 4 | 4 | B.1.617.2 | 0.000015 |
S | 460 | N460S | aAt | aGt | 3 | 3 | AY.39 | 0.000074 |
S | 460 | N460D | Aat | Gat | 3 | 3 | AY.4 | 0.000005 |
S | 460 | N460Y | Aat | Tat | 3 | 3 | AY.4 | 0.000005 |
S | 460 | N460S | aAt | aGt | 3 | 3 | AY.44 | 0.000018 |
S | 460 | N460Y | Aat | Tat | 3 | 3 | AY.61 | 0.000314 |
S | 460 | N460S | aAt | aGt | 3 | 3 | B.1.1.306 | 0.001315 |
S | 460 | N460I | aAt | aTt | 3 | 3 | B.1.1.419 | 0.022222 |
S | 460 | N460N | aaT | aaC | 3 | 3 | B.1.1.519 | 0.000119 |
S | 460 | N460T | aAt | aCt | 3 | 3 | B.1.429 | 0.000071 |
S | 460 | N460K | aaT | aaG | 3 | 3 | B.1.596 | 0.000261 |
S | 460 | N460D | Aat | Gat | 3 | 3 | B.1.617.2 | 0.000011 |
S | 460 | N460A | AAT | GCC | 2 | 2 | 0.111111 | |
S | 460 | N460C | AAT | TGC | 2 | 2 | 0.111111 | |
S | 460 | N460del | AAT | --- | 2 | 2 | 0.111111 | |
S | 460 | N460D | AaT | GaC | 1 | 2 | 0.055556 | |
S | 460 | N460D | Aat | Gat | 1 | 2 | 0.055556 | |
S | 460 | N460A | AAT | GCC | 2 | 2 | All | 0 |
S | 460 | N460P | AAT | CCA | 1 | 2 | All | 0 |
S | 460 | N460P | AAt | CCt | 1 | 2 | All | 0 |
S | 460 | N460N | aaT | aaC | 2 | 2 | AY.100 | 0.000092 |
S | 460 | N460del | AAT | --- | 2 | 2 | AY.102 | 0.000053 |
S | 460 | N460I | aAt | aTt | 2 | 2 | AY.103 | 0.000012 |
S | 460 | N460I | aAt | aTt | 2 | 2 | AY.111 | 0.000366 |
S | 460 | N460S | aAt | aGt | 2 | 2 | AY.119 | 0.000071 |
S | 460 | N460S | aAt | aGt | 2 | 2 | AY.120 | 0.000074 |
S | 460 | N460S | aAt | aGt | 2 | 2 | AY.14 | 0.000176 |
S | 460 | N460D | Aat | Gat | 2 | 2 | AY.25 | 0.000012 |
S | 460 | N460N | aaT | aaC | 2 | 2 | AY.25 | 0.000012 |
S | 460 | N460S | aAt | aGt | 2 | 2 | AY.34 | 0.000194 |
S | 460 | N460H | Aat | Cat | 2 | 2 | AY.4 | 0.000003 |
S | 460 | N460I | aAt | aTt | 2 | 2 | AY.4.2.1 | 0.000298 |
S | 460 | N460del | AAT | --- | 2 | 2 | AY.42 | 0.00008 |
S | 460 | N460D | AaT | GaC | 1 | 2 | AY.42 | 0.00004 |
S | 460 | N460D | Aat | Gat | 1 | 2 | AY.42 | 0.00004 |
S | 460 | N460T | aAt | aCt | 2 | 2 | AY.43 | 0.000009 |
S | 460 | N460Y | Aat | Tat | 2 | 2 | AY.43 | 0.000009 |
S | 460 | N460S | aAt | aGt | 2 | 2 | AY.43 | 0.000009 |
S | 460 | N460D | Aat | Gat | 2 | 2 | AY.43 | 0.000009 |
S | 460 | N460del | AAT | --- | 2 | 2 | AY.44 | 0.000012 |
S | 460 | N460I | aAt | aTt | 2 | 2 | AY.44 | 0.000012 |
S | 460 | N460N | aaT | aaC | 2 | 2 | AY.44 | 0.000012 |
S | 460 | N460K | aaT | aaA | 2 | 2 | AY.5 | 0.000041 |
S | 460 | N460Y | Aat | Tat | 2 | 2 | AY.5.3 | 0.000675 |
S | 460 | N460S | aAt | aGt | 2 | 2 | AY.71 | 0.00095 |
S | 460 | N460Y | Aat | Tat | 2 | 2 | AY.9.2 | 0.000073 |
S | 460 | N460N | aaT | aaC | 2 | 2 | B | 0.000256 |
S | 460 | N460I | aAt | aTt | 2 | 2 | B.1 | 0.000018 |
S | 460 | N460S | aAt | aGt | 2 | 2 | B.1 | 0.000018 |
S | 460 | N460T | aAt | aCt | 2 | 2 | B.1 | 0.000018 |
S | 460 | N460H | Aat | Cat | 2 | 2 | B.1.1 | 0.000036 |
S | 460 | N460I | aAt | aTt | 2 | 2 | B.1.1.203 | 0.033898 |
S | 460 | N460S | aAt | aGt | 2 | 2 | B.1.1.37 | 0.000386 |
S | 460 | N460K | aaT | aaG | 2 | 2 | B.1.1.371 | 0.020833 |
S | 460 | N460N | aaT | aaC | 2 | 2 | B.1.1.398 | 0.006452 |
S | 460 | N460Y | Aat | Tat | 2 | 2 | B.1.1.7 | 0.000002 |
S | 460 | N460T | aAt | aCt | 2 | 2 | B.1.1.7 | 0.000002 |
S | 460 | N460H | Aat | Cat | 2 | 2 | B.1.160 | 0.000062 |
S | 460 | N460T | aAt | aCt | 2 | 2 | B.1.177.58 | 0.002663 |
S | 460 | N460N | aaT | aaC | 2 | 2 | B.1.177.86 | 0.000367 |
S | 460 | N460N | aaT | aaC | 2 | 2 | B.1.214.2 | 0.001199 |
S | 460 | N460K | aaT | aaG | 2 | 2 | B.1.243 | 0.000139 |
S | 460 | N460N | aaT | aaC | 2 | 2 | B.1.409 | 0.001563 |
S | 460 | N460K | aaT | aaG | 2 | 2 | B.1.617.2 | 0.000008 |
S | 460 | N460I | aAt | aTt | 2 | 2 | B.1.617.2 | 0.000008 |
S | 460 | N460T | aAt | aCt | 2 | 2 | B.1.617.2 | 0.000008 |
S | 460 | N460S | aAt | aGt | 2 | 2 | B.1.637 | 0.000146 |
S | 460 | N460S | aAt | aGt | 2 | 2 | P.1.17 | 0.000324 |
S | 460 | N460S | aAt | aGt | 2 | 2 | P.1.7 | 0.000639 |
S | 460 | N460N | aaT | aaC | 1 | 1 | 0.055556 | |
S | 460 | N460del | AAT | --- | 1 | 1 | A | 0.000387 |
S | 460 | N460S | aAt | aGt | 1 | 1 | A.21 | 0.00277 |
S | 460 | N460Y | Aat | Tat | 1 | 1 | A.21 | 0.00277 |
S | 460 | N460E | AaT | GaG | 1 | 1 | All | 0 |
S | 460 | N460R | AAt | CGt | 1 | 1 | All | 0 |
S | 460 | N460I | aAt | aTt | 1 | 1 | AY.10 | 0.00053 |
S | 460 | N460H | Aat | Cat | 1 | 1 | AY.100 | 0.000046 |
S | 460 | N460T | aAt | aCt | 1 | 1 | AY.100 | 0.000046 |
S | 460 | N460K | aaT | aaG | 1 | 1 | AY.100 | 0.000046 |
S | 460 | N460I | aAt | aTt | 1 | 1 | AY.102 | 0.000027 |
S | 460 | N460N | aaT | aaC | 1 | 1 | AY.102 | 0.000027 |
S | 460 | N460H | Aat | Cat | 1 | 1 | AY.103 | 0.000006 |
S | 460 | N460del | AAT | --- | 1 | 1 | AY.107 | 0.000466 |
S | 460 | N460del | AAT | --- | 1 | 1 | AY.108 | 0.001103 |
S | 460 | N460D | Aat | Gat | 1 | 1 | AY.113 | 0.000142 |
S | 460 | N460H | Aat | Cat | 1 | 1 | AY.113 | 0.000142 |
S | 460 | N460T | aAt | aCt | 1 | 1 | AY.116 | 0.000287 |
S | 460 | N460N | aaT | aaC | 1 | 1 | AY.117 | 0.000085 |
S | 460 | N460del1 | Aat | -at | 1 | 1 | AY.118 | 0.000063 |
S | 460 | N460S | aAt | aGt | 1 | 1 | AY.118 | 0.000063 |
S | 460 | N460N | aaT | aaC | 1 | 1 | AY.119 | 0.000035 |
S | 460 | N460N | aaT | aaC | 1 | 1 | AY.16 | 0.00038 |
S | 460 | N460I | aAt | aTt | 1 | 1 | AY.26 | 0.000028 |
S | 460 | N460K | aaT | aaG | 1 | 1 | AY.26 | 0.000028 |
S | 460 | N460N | aaT | aaC | 1 | 1 | AY.27 | 0.000065 |
S | 460 | N460N | aaT | aaC | 1 | 1 | AY.29 | 0.000016 |
S | 460 | N460S | aAt | aGt | 1 | 1 | AY.29.1 | 0.000221 |
S | 460 | N460K | aaT | aaG | 1 | 1 | AY.3 | 0.00001 |
S | 460 | N460Y | Aat | Tat | 1 | 1 | AY.3 | 0.00001 |
S | 460 | N460N | aaT | aaC | 1 | 1 | AY.34 | 0.000097 |
S | 460 | N460I | aAt | aTt | 1 | 1 | AY.36 | 0.000148 |
S | 460 | N460T | aAt | aCt | 1 | 1 | AY.39 | 0.000025 |
S | 460 | N460T | aAt | aCt | 1 | 1 | AY.4 | 0.000002 |
S | 460 | N460K | aaT | aaG | 1 | 1 | AY.4.2 | 0.000022 |
S | 460 | N460D | Aat | Gat | 1 | 1 | AY.4.5 | 0.000107 |
S | 460 | N460S | aAt | aGt | 1 | 1 | AY.42 | 0.00004 |
S | 460 | N460Y | Aat | Tat | 1 | 1 | AY.42 | 0.00004 |
S | 460 | N460C | AAT | TGC | 1 | 1 | AY.43 | 0.000004 |
S | 460 | N460T | aAt | aCt | 1 | 1 | AY.44 | 0.000006 |
S | 460 | N460Y | Aat | Tat | 1 | 1 | AY.44 | 0.000006 |
S | 460 | N460C | AAt | TGt | 1 | 1 | AY.45 | 0.000122 |
S | 460 | N460Y | Aat | Tat | 1 | 1 | AY.45 | 0.000122 |
S | 460 | N460N | aaT | aaC | 1 | 1 | AY.47 | 0.000031 |
S | 460 | N460S | aAt | aGt | 1 | 1 | AY.5 | 0.000021 |
S | 460 | N460S | aAt | aGt | 1 | 1 | AY.51 | 0.000909 |
S | 460 | N460del | AAT | --- | 1 | 1 | AY.54 | 0.000095 |
S | 460 | N460I | aAt | aTt | 1 | 1 | AY.6 | 0.000041 |
S | 460 | N460N | aaT | aaC | 1 | 1 | AY.6 | 0.000041 |
S | 460 | N460N | aaT | aaC | 1 | 1 | AY.61 | 0.000105 |
S | 460 | N460Y | Aat | Tat | 1 | 1 | AY.67 | 0.000464 |
S | 460 | N460N | aaT | aaC | 1 | 1 | AY.68 | 0.000274 |
S | 460 | N460I | aAt | aTt | 1 | 1 | AY.7 | 0.000196 |
S | 460 | N460del | AAT | --- | 1 | 1 | AY.75 | 0.000056 |
S | 460 | N460N | aaT | aaC | 1 | 1 | AY.82 | 0.001357 |
S | 460 | N460R | AAt | CGt | 1 | 1 | AY.9.2 | 0.000037 |
S | 460 | N460del1 | Aat | -at | 1 | 1 | AY.9.2 | 0.000037 |
S | 460 | N460S | aAt | aGt | 1 | 1 | AY.9.2 | 0.000037 |
S | 460 | N460S | aAt | aGt | 1 | 1 | AY.98.1 | 0.000048 |
S | 460 | N460del | AAT | --- | 1 | 1 | AY.99 | 0.001049 |
S | 460 | N460D | Aat | Gat | 1 | 1 | B.1 | 0.000009 |
S | 460 | N460P | AAt | CCt | 1 | 1 | B.1.1 | 0.000018 |
S | 460 | N460T | aAt | aCt | 1 | 1 | B.1.1 | 0.000018 |
S | 460 | N460N | aaT | aaC | 1 | 1 | B.1.1 | 0.000018 |
S | 460 | N460I | aAt | aTt | 1 | 1 | B.1.1.10 | 0.001115 |
S | 460 | N460I | aAt | aTt | 1 | 1 | B.1.1.134 | 0.011364 |
S | 460 | N460I | aAt | aTt | 1 | 1 | B.1.1.153 | 0.001095 |
S | 460 | N460I | aAt | aTt | 1 | 1 | B.1.1.16 | 0.055556 |
S | 460 | N460N | aaT | aaC | 1 | 1 | B.1.1.194 | 0.00495 |
S | 460 | N460N | aaT | aaC | 1 | 1 | B.1.1.274 | 0.005051 |
S | 460 | N460del | AAT | --- | 1 | 1 | B.1.1.306 | 0.000438 |
S | 460 | N460K | aaT | aaG | 1 | 1 | B.1.1.385 | 0.004464 |
S | 460 | N460S | aAt | aGt | 1 | 1 | B.1.1.420 | 0.001006 |
S | 460 | N460S | aAt | aGt | 1 | 1 | B.1.1.519 | 0.00004 |
S | 460 | N460D | Aat | Gat | 1 | 1 | B.1.1.7 | 0.000001 |
S | 460 | N460E | AaT | GaG | 1 | 1 | B.1.1.7 | 0.000001 |
S | 460 | N460T | aAt | aCt | 1 | 1 | B.1.1.70 | 0.000341 |
S | 460 | N460T | aAt | aCt | 1 | 1 | B.1.111 | 0.001175 |
S | 460 | N460N | aaT | aaC | 1 | 1 | B.1.160 | 0.000031 |
S | 460 | N460K | aaT | aaA | 1 | 1 | B.1.160 | 0.000031 |
S | 460 | N460S | aAt | aGt | 1 | 1 | B.1.160 | 0.000031 |
S | 460 | N460N | aaT | aaC | 1 | 1 | B.1.160.7 | 0.002079 |
S | 460 | N460D | Aat | Gat | 1 | 1 | B.1.177 | 0.000013 |
S | 460 | N460N | aaT | aaC | 1 | 1 | B.1.177 | 0.000013 |
S | 460 | N460I | aAt | aTt | 1 | 1 | B.1.177.4 | 0.000211 |
S | 460 | N460del | AAT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
S | 460 | N460K | aaT | aaG | 1 | 1 | B.1.177.44 | 0.000519 |
S | 460 | N460D | Aat | Gat | 1 | 1 | B.1.177.44 | 0.000519 |
S | 460 | N460K | aaT | aaG | 1 | 1 | B.1.177.5 | 0.001242 |
S | 460 | N460N | aaT | aaC | 1 | 1 | B.1.177.60 | 0.000218 |
S | 460 | N460K | aaT | aaG | 1 | 1 | B.1.182 | 0.007246 |
S | 460 | N460N | aaT | aaC | 1 | 1 | B.1.2 | 0.000009 |
S | 460 | N460I | aAt | aTt | 1 | 1 | B.1.2 | 0.000009 |
S | 460 | N460del | AAT | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 460 | N460del1 | AAt | -Ct | 1 | 1 | B.1.2 | 0.000009 |
S | 460 | N460D | Aat | Gat | 1 | 1 | B.1.2 | 0.000009 |
S | 460 | N460K | aaT | aaG | 1 | 1 | B.1.221 | 0.000071 |
S | 460 | N460N | aaT | aaC | 1 | 1 | B.1.221 | 0.000071 |
S | 460 | N460N | aaT | aaC | 1 | 1 | B.1.234 | 0.000132 |
S | 460 | N460S | aAt | aGt | 1 | 1 | B.1.258 | 0.000067 |
S | 460 | N460del | AAT | --- | 1 | 1 | B.1.258.17 | 0.000104 |
S | 460 | N460K | aaT | aaG | 1 | 1 | B.1.351 | 0.00003 |
S | 460 | N460del | AAT | --- | 1 | 1 | B.1.351 | 0.00003 |
S | 460 | N460T | aAt | aCt | 1 | 1 | B.1.371 | 0.001122 |
S | 460 | N460N | aaT | aaC | 1 | 1 | B.1.377 | 0.004566 |
S | 460 | N460N | aaT | aaC | 1 | 1 | B.1.399 | 0.001934 |
S | 460 | N460N | aaT | aaC | 1 | 1 | B.1.408 | 0.00369 |
S | 460 | N460N | aaT | aaC | 1 | 1 | B.1.427 | 0.00005 |
S | 460 | N460K | aaT | aaG | 1 | 1 | B.1.429 | 0.000024 |
S | 460 | N460N | aaT | aaC | 1 | 1 | B.1.456 | 0.003268 |
S | 460 | N460N | aaT | aaC | 1 | 1 | B.1.468 | 0.005714 |
S | 460 | N460S | aAt | aGt | 1 | 1 | B.1.509 | 0.000866 |
S | 460 | N460N | aaT | aaC | 1 | 1 | B.1.517 | 0.000427 |
S | 460 | N460N | aaT | aaC | 1 | 1 | B.1.518 | 0.011765 |
S | 460 | N460S | aAt | aGt | 1 | 1 | B.1.525 | 0.000113 |
S | 460 | N460del | AAT | --- | 1 | 1 | B.1.526 | 0.000024 |
S | 460 | N460T | aAt | aCt | 1 | 1 | B.1.526 | 0.000024 |
S | 460 | N460N | aaT | aaC | 1 | 1 | B.1.545 | 0.014493 |
S | 460 | N460N | aaT | aaC | 1 | 1 | B.1.560 | 0.00463 |
S | 460 | N460N | aaT | aaC | 1 | 1 | B.1.580 | 0.004065 |
S | 460 | N460N | aaT | aaC | 1 | 1 | B.1.595 | 0.000261 |
S | 460 | N460P | AAT | CCA | 1 | 1 | B.1.617.2 | 0.000004 |
S | 460 | N460H | Aat | Cat | 1 | 1 | B.1.617.2 | 0.000004 |
S | 460 | N460del | AAT | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 460 | N460D | Aat | Gat | 1 | 1 | B.1.621 | 0.000089 |
S | 460 | N460N | aaT | aaC | 1 | 1 | B.1.630 | 0.005236 |
S | 460 | N460T | aAt | aCt | 1 | 1 | B.29 | 0.003509 |
S | 460 | N460del | AAT | --- | 1 | 1 | B.45 | 0.003831 |
S | 460 | N460S | aAt | aGt | 1 | 1 | C.16 | 0.00106 |
S | 460 | N460S | aAt | aGt | 1 | 1 | C.37 | 0.000116 |
S | 460 | N460K | aaT | aaA | 1 | 1 | D.2 | 0.000075 |
S | 460 | N460S | aAt | aGt | 1 | 1 | D.2 | 0.000075 |
S | 460 | N460S | aAt | aGt | 1 | 1 | P.1 | 0.000016 |
S | 460 | N460K | aaT | aaG | 1 | 1 | P.1 | 0.000016 |
S | 460 | N460Y | Aat | Tat | 1 | 1 | P.1 | 0.000016 |
S | 460 | N460del1 | aaT | aa- | 1 | 1 | P.1 | 0.000016 |
S | 460 | N460del | AAT | --- | 1 | 1 | P.1.1 | 0.000318 |
S | 460 | N460N | aaT | aaC | 1 | 1 | P.1.12 | 0.000484 |
S | 460 | N460N | aaT | aaC | 1 | 1 | P.1.14 | 0.000048 |
S | 460 | N460N | aaT | aaC | 1 | 1 | P.1.7 | 0.000319 |
S | 460 | N460Y | Aat | Tat | 1 | 1 | P.2 | 0.000187 |
S | 460 | N460N | aaT | aaC | 1 | 1 | Q.1 | 0.000126 |
S | 460 | N460S | aAt | aGt | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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