CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 450

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S450N450KnonsynaaTaaG183718140.9874822910-22912
S450N450KnonsynaaTaaA1837230.012520422910-22912
S450N450NsynaaTaaC458458122910-22912
S450N450DnonsynAatGat89870.97752822910-22912
S450N450DnonsynAaTGaC8920.022471922910-22912
S450N450deldelAAT---3333122910-22912
S450N450HnonsynAatCat28260.92857122910-22912
S450N450HnonsynAaTCaC2820.071428622910-22912
S450N450SnonsynaAtaGt21130.61904822910-22912
S450N450SnonsynAATTCC2130.14285722910-22912
S450N450SnonsynAAtTCt2130.14285722910-22912
S450N450SnonsynAATTCG2120.095238122910-22912
S450N450del2delAAt--t1717122910-22912
S450N450TnonsynaAtaCt1460.42857122910-22912
S450N450TnonsynaATaCG1440.28571422910-22912
S450N450TnonsynaATaCC1430.21428622910-22912
S450N450TnonsynaATaCA1410.071428622910-22912
S450N450YnonsynAatTat13100.76923122910-22912
S450N450YnonsynAaTTaC1330.23076922910-22912
S450N450InonsynaAtaTt1290.7522910-22912
S450N450InonsynaATaTC1230.2522910-22912
S450N450LnonsynAATCTG930.33333322910-22912
S450N450LnonsynAAtCTt920.22222222910-22912
S450N450LnonsynAATCTC920.22222222910-22912
S450N450LnonsynAATTTG920.22222222910-22912
S450N450PnonsynAATCCC620.33333322910-22912
S450N450PnonsynAAtCCt620.33333322910-22912
S450N450PnonsynAATCCG620.33333322910-22912
S450N450XnonsynAaTTaG430.7522910-22912
S450N450FnonsynAATTTC420.522910-22912
S450N450FnonsynAAtTTt420.522910-22912
S450N450XnonsynAaTTaA410.2522910-22912
S450N450MnonsynaATaTG33122910-22912
S450N450QnonsynAaTCaG33122910-22912
S450N450RnonsynaATaGG11122910-22912
S450N450del1delAat-at11122910-22912
S450N450EnonsynAaTGaA11122910-22912
S450N450VnonsynAATGTA11122910-22912

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S450N450KaaTaaG18141837All0.000347
S450N450KaaTaaA231837All0.000004
S450N450KaaTaaG14011401B.1.214.20.839928
S450N450NaaTaaC458458All0.000088
S450N450NaaTaaC262262AY.30.002606
S450N450KaaTaaG140140B.1.1.5280.673077
S450N450KaaTaaG118118B.1.1.70.000106
S450N450DAatGat8789All0.000017
S450N450DAaTGaC289All0
S450N450KaaTaaG5656B.1.6350.982456
S450N450NaaTaaC3434AY.470.001058
S450N450delAAT---3333All0.000006
S450N450NaaTaaC3131AY.40.000048
S450N450HAatCat2628All0.000005
S450N450HAaTCaC228All0
S450N450KaaTaaG2628B.10.000238
S450N450KaaTaaA228B.10.000018
S450N450SaAtaGt1321All0.000002
S450N450SAATTCC321All0.000001
S450N450SAAtTCt321All0.000001
S450N450SAATTCG221All0
S450N450NaaTaaC1919B.1.1.70.000017
S450N450del2AAt--t1717All0.000003
S450N450NaaTaaC1616B.1.617.20.00006
S450N450TaAtaCt614All0.000001
S450N450TaATaCG414All0.000001
S450N450TaATaCC314All0.000001
S450N450TaATaCA114All0
S450N450YAatTat1013All0.000002
S450N450YAaTTaC313All0.000001
S450N450KaaTaaG1313B.1.214.30.092857
S450N450IaAtaTt912All0.000002
S450N450IaATaTC312All0.000001
S450N450HAatCat1111AY.430.000049
S450N450DAatGat1011B.1.617.20.000038
S450N450DAaTGaC111B.1.617.20.000004
S450N450TaAtaCt5100.277778
S450N450TaATaCC3100.166667
S450N450TaATaCG2100.111111
S450N450KaaTaaG1010B.1.2100.021322
S450N450LAATCTG39All0.000001
S450N450LAATTTG29All0
S450N450LAAtCTt29All0
S450N450LAATCTC29All0
S450N450DAatGat99B.1.1.70.000008
S450N450NaaTaaC99B.1.3110.002471
S450N450DAatGat99B.1.3510.000268
S450N450SAATTCC380.166667
S450N450SAAtTCt380.166667
S450N450LAATCTC280.111111
S450N450SAATTCG280.111111
S450N450LAATCTG280.111111
S450N450LAATTTG280.111111
S450N450LAAtCTt280.111111
S450N450DAatGat88AY.260.000226
S450N450NaaTaaC88AY.440.000049
S450N450NaaTaaC88P.10.000126
S450N450YAatTat470.222222
S450N450YAaTTaC370.166667
S450N450SaAtaGt77B.1.1.70.000006
S450N450KaaTaaG560.277778
S450N450PAATCCG260.111111
S450N450PAATCCC260.111111
S450N450PAAtCCt260.111111
S450N450KaaTaaA160.055556
S450N450PAATCCC26All0
S450N450PAAtCCt26All0
S450N450PAATCCG26All0
S450N450KaaTaaA66AY.1210.000812
S450N450del2AAt--t66AY.430.000027
S450N450NaaTaaC66B.1.1600.000187
S450N450KaaTaaA56B.1.617.20.000019
S450N450KaaTaaG16B.1.617.20.000004
S450N450DAatGat55AY.40.000008
S450N450delAAT---55AY.430.000022
S450N450DAatGat55AY.430.000022
S450N450KaaTaaG55AY.750.00028
S450N450KaaTaaG55B.1.1.340.065789
S450N450delAAT---55B.1.1.70.000004
S450N450NaaTaaC55B.1.2370.024876
S450N450HAatCat55B.1.617.20.000019
S450N450XAaTTaG340.166667
S450N450FAAtTTt240.111111
S450N450HAatCat240.111111
S450N450IaAtaTt240.111111
S450N450FAATTTC240.111111
S450N450HAaTCaC240.111111
S450N450IaATaTC240.111111
S450N450XAaTTaA140.055556
S450N450XAaTTaG34All0.000001
S450N450FAAtTTt24All0
S450N450FAATTTC24All0
S450N450XAaTTaA14All0
S450N450NaaTaaC44AY.1020.000106
S450N450DAatGat44AY.1030.000025
S450N450NaaTaaC44AY.430.000018
S450N450HAatCat44AY.450.000487
S450N450DAatGat44B.1.10.000073
S450N450KaaTaaG34B.1.10.000054
S450N450KaaTaaA14B.1.10.000018
S450N450KaaTaaG44B.1.214.10.08
S450N450KaaTaaG24B.1.36.290.001035
S450N450KaaTaaA24B.1.36.290.001035
S450N450NaaTaaC330.166667
S450N450MaATaTG33All0.000001
S450N450QAaTCaG33All0.000001
S450N450NaaTaaC33AY.1030.000019
S450N450NaaTaaC33AY.1190.000106
S450N450NaaTaaC33AY.250.000018
S450N450NaaTaaC33AY.4.20.000065
S450N450YAatTat33B.1.1.70.000003
S450N450KaaTaaG23B.1.1770.000026
S450N450KaaTaaA13B.1.1770.000013
S450N450DAatGat33D.20.000225
S450N450QAaTCaG220.111111
S450N450delAAT---220.111111
S450N450MaATaTG220.111111
S450N450NaaTaaC22AY.290.000032
S450N450KaaTaaG12AY.430.000004
S450N450KaaTaaA12AY.430.000004
S450N450DAatGat22AY.50.000041
S450N450NaaTaaC22AY.640.00119
S450N450NaaTaaC22AY.810.003984
S450N450NaaTaaC22AY.880.001768
S450N450del2AAt--t22AY.9.20.000073
S450N450KaaTaaG22AY.950.001522
S450N450DAatGat22B.10.000018
S450N450NaaTaaC22B.10.000018
S450N450NaaTaaC22B.1.1.3760.011905
S450N450DAatGat22B.1.1770.000026
S450N450IaAtaTt22B.1.20.000018
S450N450KaaTaaG22B.1.2140.007326
S450N450NaaTaaC22B.1.214.20.001199
S450N450NaaTaaC22B.1.2580.000133
S450N450TaATaCG22B.1.3510.000059
S450N450KaaTaaG22B.1.4590.008163
S450N450del2AAt--t22B.1.617.20.000008
S450N450delAAT---22B.1.617.20.000008
S450N450IaAtaTt22B.1.617.30.00597
S450N450DAatGat22B.1.6210.000177
S450N450delAAT---11A0.000387
S450N450del1Aat-at11All0
S450N450RaATaGG11All0
S450N450EAaTGaA11All0
S450N450VAATGTA11All0
S450N450DAatGat11AY.1020.000027
S450N450delAAT---11AY.1020.000027
S450N450KaaTaaG11AY.1030.000006
S450N450delAAT---11AY.1070.000466
S450N450delAAT---11AY.1080.001103
S450N450HAatCat11AY.1100.000113
S450N450del2AAt--t11AY.1130.000142
S450N450DAatGat11AY.1140.000231
S450N450NaaTaaC11AY.1160.000287
S450N450delAAT---11AY.1190.000035
S450N450KaaTaaA11AY.200.000039
S450N450DAatGat11AY.230.00007
S450N450KaaTaaG11AY.250.000006
S450N450TaATaCA11AY.30.00001
S450N450KaaTaaA11AY.340.000097
S450N450NaaTaaC11AY.370.000316
S450N450NaaTaaC11AY.390.000025
S450N450KaaTaaG11AY.40.000002
S450N450YAatTat11AY.40.000002
S450N450NaaTaaC11AY.4.30.000842
S450N450delAAT---11AY.420.00004
S450N450RaATaGG11AY.420.00004
S450N450NaaTaaC11AY.420.00004
S450N450del2AAt--t11AY.420.00004
S450N450IaATaTC11AY.420.00004
S450N450DAatGat11AY.440.000006
S450N450del2AAt--t11AY.440.000006
S450N450del2AAt--t11AY.450.000122
S450N450DAatGat11AY.450.000122
S450N450HAatCat11AY.46.60.000072
S450N450DAatGat11AY.470.000031
S450N450NaaTaaC11AY.550.000917
S450N450NaaTaaC11AY.60.000041
S450N450DAatGat11AY.60.000041
S450N450KaaTaaG11AY.60.000041
S450N450SaAtaGt11AY.670.000464
S450N450DAatGat11AY.750.000056
S450N450del2AAt--t11AY.840.000437
S450N450NaaTaaC11AY.840.000437
S450N450DAatGat11AY.890.004902
S450N450delAAT---11AY.9.20.000037
S450N450KaaTaaA11AY.980.000079
S450N450IaAtaTt11AY.980.000079
S450N450delAAT---11AY.98.10.000048
S450N450del2AAt--t11AY.990.001049
S450N450NaaTaaC11AY.99.20.000092
S450N450HAatCat11B0.000128
S450N450del2AAt--t11B.10.000009
S450N450YAatTat11B.10.000009
S450N450HAatCat11B.10.000009
S450N450delAAT---11B.10.000009
S450N450EAaTGaA11B.10.000009
S450N450SaAtaGt11B.1.10.000018
S450N450QAaTCaG11B.1.10.000018
S450N450LAATCTG11B.1.10.000018
S450N450MaATaTG11B.1.10.000018
S450N450KaaTaaG11B.1.1.2220.000204
S450N450NaaTaaC11B.1.1.250.000569
S450N450delAAT---11B.1.1.3060.000438
S450N450NaaTaaC11B.1.1.4100.037037
S450N450KaaTaaG11B.1.1.4340.000349
S450N450NaaTaaC11B.1.1.5190.00004
S450N450KaaTaaG11B.1.1.5190.00004
S450N450NaaTaaC11B.1.1.5250.005464
S450N450DAatGat11B.1.1.5250.005464
S450N450DAatGat11B.1.1110.001175
S450N450TaAtaCt11B.1.1390.000733
S450N450YAatTat11B.1.1600.000031
S450N450delAAT---11B.1.1770.000013
S450N450IaAtaTt11B.1.1770.000013
S450N450NaaTaaC11B.1.1770.000013
S450N450NaaTaaC11B.1.177.150.000631
S450N450NaaTaaC11B.1.177.260.006993
S450N450delAAT---11B.1.177.40.000211
S450N450NaaTaaC11B.1.177.860.000183
S450N450delAAT---11B.1.20.000009
S450N450KaaTaaG11B.1.20.000009
S450N450DAatGat11B.1.20.000009
S450N450NaaTaaC11B.1.20.000009
S450N450delAAT---11B.1.214.20.0006
S450N450DAatGat11B.1.2210.000071
S450N450KaaTaaG11B.1.2210.000071
S450N450KaaTaaG11B.1.2430.00007
S450N450DAaTGaC11B.1.2580.000067
S450N450SaAtaGt11B.1.2580.000067
S450N450KaaTaaG11B.1.2630.047619
S450N450KaaTaaG11B.1.3510.00003
S450N450delAAT---11B.1.3510.00003
S450N450DAatGat11B.1.351.30.000876
S450N450DAatGat11B.1.36.100.004785
S450N450SaAtaGt11B.1.36.160.001425
S450N450DAatGat11B.1.36.80.001
S450N450IaAtaTt11B.1.3690.000285
S450N450NaaTaaC11B.1.3710.001122
S450N450del1Aat-at11B.1.4290.000024
S450N450KaaTaaG11B.1.5050.004386
S450N450NaaTaaC11B.1.5260.000024
S450N450DAatGat11B.1.5260.000024
S450N450delAAT---11B.1.5260.000024
S450N450DAatGat11B.1.5610.000397
S450N450SaAtaGt11B.1.5950.000261
S450N450KaaTaaG11B.1.5960.000087
S450N450DAatGat11B.1.6090.000479
S450N450VAATGTA11B.1.617.20.000004
S450N450delAAT---11B.1.6200.000946
S450N450SaAtaGt11B.1.6210.000089
S450N450NaaTaaC11B.1.6300.005236
S450N450KaaTaaG11B.1.6370.000073
S450N450KaaTaaG11B.6.60.000889
S450N450KaaTaaA11D.20.000075
S450N450DAatGat11P.10.000016
S450N450delAAT---11P.1.10.000318
S450N450DAatGat11P.1.140.000048
S450N450delAAT---11P.1.150.000232
S450N450DAatGat11Q.40.000455