CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 449

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S449Y449SnonsyntAttCt9869790.99290122907-22909
S449Y449SnonsyntATtCA98660.0060851922907-22909
S449Y449SnonsyntATtCG98610.001014222907-22909
S449Y449HnonsynTatCat8528480.99530522907-22909
S449Y449HnonsynTaTCaC85240.0046948422907-22909
S449Y449NnonsynTatAat560560122907-22909
S449Y449YsyntaTtaC451451122907-22909
S449Y449deldelTAT---4949122907-22909
S449Y449DnonsynTatGat3535122907-22909
S449Y449FnonsyntAttTt30290.96666722907-22909
S449Y449FnonsyntATtTC3010.033333322907-22909
S449Y449TnonsynTATACA27180.66666722907-22909
S449Y449TnonsynTAtACt2780.29629622907-22909
S449Y449TnonsynTATACC2710.03703722907-22909
S449Y449VnonsynTATGTA20180.922907-22909
S449Y449VnonsynTAtGTt2020.122907-22909
S449Y449XnonsyntaTtaA18130.72222222907-22909
S449Y449XnonsyntaTtaG1850.27777822907-22909
S449Y449KnonsynTaTAaA1010122907-22909
S449Y449CnonsyntAttGt88122907-22909
S449Y449LnonsynTAtCTt630.522907-22909
S449Y449LnonsynTATCTC610.16666722907-22909
S449Y449LnonsynTATCTG610.16666722907-22909
S449Y449LnonsyntATtTG610.16666722907-22909
S449Y449InonsynTATATA22122907-22909
S449Y449RnonsynTAtCGt11122907-22909
S449Y449AnonsynTATGCC11122907-22909
S449Y449QnonsynTaTCaG11122907-22909
S449Y449EnonsynTaTGaG11122907-22909

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S449Y449StAttCt979986All0.000187
S449Y449StATtCA6986All0.000001
S449Y449StATtCG1986All0
S449Y449StAttCt952952B.1.1.70.000852
S449Y449HTatCat848852All0.000162
S449Y449HTaTCaC4852All0.000001
S449Y449NTatAat560560All0.000107
S449Y449NTatAat456456B.1.6210.040365
S449Y449YtaTtaC451451All0.000086
S449Y449HTatCat333334B.1.1.70.000298
S449Y449HTaTCaC1334B.1.1.70.000001
S449Y449HTatCat207207C.1.20.880851
S449Y449HTatCat178178A.290.946809
S449Y449YtaTtaC149149B.1.1.70.000133
S449Y449YtaTtaC111111AY.40.000173
S449Y449delTAT---4949All0.000009
S449Y449YtaTtaC4545B.1.2210.003196
S449Y449DTatGat3535All0.000007
S449Y449YtaTtaC3535AY.250.000211
S449Y449NTatAat3333B.10.000302
S449Y449DTatGat3232B.1.1.70.000029
S449Y449FtAttTt2930All0.000006
S449Y449FtATtTC130All0
S449Y449NTatAat2929B.1.1.70.000026
S449Y449TTATACA1827All0.000003
S449Y449TTAtACt827All0.000002
S449Y449TTATACC127All0
S449Y449HTatCat2525C.36.3.10.067935
S449Y449HTatCat2121B.1.214.20.01259
S449Y449VTATGTA1820All0.000003
S449Y449VTAtGTt220All0
S449Y449NTatAat2020B.1.5760.018132
S449Y449YtaTtaC1919B.1.20.000167
S449Y449XtaTtaA1318All0.000002
S449Y449XtaTtaG518All0.000001
S449Y449HTatCat1717Q.70.018889
S449Y449StAttCt1616P.1.150.003717
S449Y449YtaTtaC1414B.1.1.2940.017722
S449Y449TTATACA813AY.430.000035
S449Y449TTAtACt513AY.430.000022
S449Y449delTAT---1111AY.430.000049
S449Y449KTaTAaA1010All0.000002
S449Y449HTatCat1010P.10.000158
S449Y449VTATGTA99AY.200.00035
S449Y449StAttCt59AY.430.000022
S449Y449StATtCA49AY.430.000018
S449Y449CtAttGt88All0.000002
S449Y449YtaTtaC88B.1.617.20.00003
S449Y449NTatAat77AY.430.000031
S449Y449YtaTtaC77B.10.000064
S449Y449FtAttTt77B.1.10.000127
S449Y449FtAttTt77B.1.1.70.000006
S449Y449HTatCat77B.1.3510.000208
S449Y449LTAtCTt36All0.000001
S449Y449LtATtTG16All0
S449Y449LTATCTG16All0
S449Y449LTATCTC16All0
S449Y449KTaTAaA66AY.430.000027
S449Y449XtaTtaA56AY.430.000022
S449Y449XtaTtaG16AY.430.000004
S449Y449delTAT---66B.1.1.70.000005
S449Y449YtaTtaC66B.1.5260.000141
S449Y449TTATACA46B.1.617.20.000015
S449Y449TTAtACt26B.1.617.20.000008
S449Y449YtaTtaC55AY.440.00003
S449Y449HTatCat55B0.000639
S449Y449HTatCat55B.10.000046
S449Y449HTatCat55P.1.140.000239
S449Y449YtaTtaC440.222222
S449Y449LTAtCTt140.055556
S449Y449LTATCTC140.055556
S449Y449LtATtTG140.055556
S449Y449LTATCTG140.055556
S449Y449YtaTtaC44AY.30.00004
S449Y449TTATACA44AY.450.000487
S449Y449delTAT---44B.1.617.20.000015
S449Y449StATtCA24B.1.617.20.000008
S449Y449StAttCt24B.1.617.20.000008
S449Y449HTatCat33A0.001161
S449Y449YtaTtaC33A.2.5.30.030928
S449Y449YtaTtaC33AY.1130.000427
S449Y449YtaTtaC33AY.330.0002
S449Y449HTaTCaC23AY.420.00008
S449Y449HTatCat13AY.420.00004
S449Y449YtaTtaC33AY.430.000013
S449Y449HTatCat33AY.680.000821
S449Y449FtAttTt33B.10.000027
S449Y449NTatAat33B.1.3510.000089
S449Y449KTaTAaA33B.1.617.20.000011
S449Y449NTatAat33B.1.617.20.000011
S449Y449XtaTtaA33B.1.617.20.000011
S449Y449delTAT---220.111111
S449Y449ITATATA220.111111
S449Y449FtAttTt120.055556
S449Y449HTaTCaC120.055556
S449Y449HTatCat120.055556
S449Y449FtATtTC120.055556
S449Y449NTatAat22A.20.001324
S449Y449ITATATA22All0
S449Y449VTATGTA22AY.1190.000071
S449Y449VTATGTA22AY.260.000057
S449Y449VTATGTA22AY.30.00002
S449Y449YtaTtaC22AY.420.00008
S449Y449delTAT---22AY.420.00008
S449Y449YtaTtaC22AY.460.000208
S449Y449delTAT---22AY.9.20.000073
S449Y449delTAT---22B.10.000018
S449Y449HTatCat22B.1.10.000036
S449Y449YtaTtaC22B.1.1.2840.000215
S449Y449VTAtGTt22B.1.1.70.000002
S449Y449YtaTtaC22B.1.1770.000026
S449Y449YtaTtaC22B.1.258.140.001961
S449Y449delTAT---22B.1.3510.000059
S449Y449YtaTtaC22B.1.4270.000101
S449Y449YtaTtaC22B.1.4290.000047
S449Y449YtaTtaC22B.1.617.10.000258
S449Y449HTatCat22B.1.617.20.000008
S449Y449HTatCat22B.1.6210.000177
S449Y449HTatCat22C.10.004785
S449Y449QTaTCaG110.055556
S449Y449XtaTtaG110.055556
S449Y449delTAT---11A0.000387
S449Y449FtAttTt11A.20.000662
S449Y449HTatCat11A.20.000662
S449Y449HTatCat11A.270.001656
S449Y449YtaTtaC11A.270.001656
S449Y449ETaTGaG11All0
S449Y449ATATGCC11All0
S449Y449RTAtCGt11All0
S449Y449QTaTCaG11All0
S449Y449VTATGTA11AY.1000.000046
S449Y449YtaTtaC11AY.1000.000046
S449Y449delTAT---11AY.1020.000027
S449Y449NTatAat11AY.1020.000027
S449Y449StAttCt11AY.1020.000027
S449Y449XtaTtaA11AY.1020.000027
S449Y449VTATGTA11AY.1020.000027
S449Y449TTAtACt11AY.1020.000027
S449Y449FtAttTt11AY.1020.000027
S449Y449CtAttGt11AY.1030.000006
S449Y449HTatCat11AY.1030.000006
S449Y449delTAT---11AY.1070.000466
S449Y449delTAT---11AY.1080.001103
S449Y449TTATACA11AY.1100.000113
S449Y449delTAT---11AY.1130.000142
S449Y449HTatCat11AY.1200.000037
S449Y449YtaTtaC11AY.210.001898
S449Y449NTatAat11AY.250.000006
S449Y449HTatCat11AY.250.000006
S449Y449XtaTtaA11AY.30.00001
S449Y449FtAttTt11AY.340.000097
S449Y449YtaTtaC11AY.390.000025
S449Y449FtAttTt11AY.390.000025
S449Y449YtaTtaC11AY.39.10.00004
S449Y449HTatCat11AY.40.000002
S449Y449KTaTAaA11AY.420.00004
S449Y449HTatCat11AY.430.000004
S449Y449VTATGTA11AY.440.000006
S449Y449delTAT---11AY.440.000006
S449Y449delTAT---11AY.450.000122
S449Y449YtaTtaC11AY.46.10.001027
S449Y449TTATACA11AY.46.60.000072
S449Y449YtaTtaC11AY.46.60.000072
S449Y449XtaTtaG11AY.50.000021
S449Y449YtaTtaC11AY.50.000021
S449Y449NTatAat11AY.520.000814
S449Y449TTATACC11AY.670.000464
S449Y449delTAT---11AY.840.000437
S449Y449CtAttGt11AY.9.20.000037
S449Y449delTAT---11AY.990.001049
S449Y449NTatAat11B0.000128
S449Y449FtAttTt11B0.000128
S449Y449StATtCG11B.10.000009
S449Y449CtAttGt11B.10.000009
S449Y449ETaTGaG11B.1.10.000018
S449Y449YtaTtaC11B.1.10.000018
S449Y449DTatGat11B.1.10.000018
S449Y449XtaTtaG11B.1.10.000018
S449Y449FtAttTt11B.1.1.1610.003534
S449Y449XtaTtaA11B.1.1.2890.002083
S449Y449HTatCat11B.1.1.2940.001266
S449Y449delTAT---11B.1.1.3060.000438
S449Y449DTatGat11B.1.1.3720.000689
S449Y449HTatCat11B.1.1.4020.011111
S449Y449FtAttTt11B.1.1.4090.002833
S449Y449LTAtCTt11B.1.1.70.000001
S449Y449CtAttGt11B.1.1.70.000001
S449Y449FtAttTt11B.1.1.700.000341
S449Y449delTAT---11B.1.1770.000013
S449Y449HTatCat11B.1.177.340.052632
S449Y449delTAT---11B.1.177.40.000211
S449Y449HTatCat11B.1.20.000009
S449Y449delTAT---11B.1.20.000009
S449Y449NTatAat11B.1.20.000009
S449Y449delTAT---11B.1.214.20.0006
S449Y449YtaTtaC11B.1.2400.000216
S449Y449HTatCat11B.1.2430.00007
S449Y449DTatGat11B.1.2430.00007
S449Y449LTAtCTt11B.1.2580.000067
S449Y449HTatCat11B.1.2680.010417
S449Y449YtaTtaC11B.1.3510.00003
S449Y449CtAttGt11B.1.36.160.001425
S449Y449XtaTtaG11B.1.3620.001541
S449Y449HTatCat11B.1.4290.000024
S449Y449XtaTtaA11B.1.4700.001404
S449Y449CtAttGt11B.1.5010.007353
S449Y449StAttCt11B.1.5080.025641
S449Y449CtAttGt11B.1.5260.000024
S449Y449delTAT---11B.1.5260.000024
S449Y449NTatAat11B.1.5820.000491
S449Y449XtaTtaA11B.1.5960.000087
S449Y449HTatCat11B.1.617.10.000129
S449Y449RTAtCGt11B.1.617.20.000004
S449Y449ATATGCC11B.1.617.20.000004
S449Y449FtAttTt11B.1.617.20.000004
S449Y449delTAT---11B.1.6200.000946
S449Y449YtaTtaC11B.1.6300.005236
S449Y449FtAttTt11B.550.00295
S449Y449HTatCat11C.350.000774
S449Y449YtaTtaC11D.20.000075
S449Y449CtAttGt11D.20.000075
S449Y449YtaTtaC11P.10.000016
S449Y449StAttCt11P.10.000016
S449Y449NTatAat11P.10.000016
S449Y449delTAT---11P.1.10.000318
S449Y449FtAttTt11P.1.10.000318
S449Y449delTAT---11P.1.150.000232
S449Y449HTatCat11P.1.70.000319
S449Y449YtaTtaC11P.20.000187
S449Y449HTatCat11P.30.001595
S449Y449YtaTtaC11Q.10.000126
S449Y449StAttCt11Q.10.000126
S449Y449HTatCat11Q.80.000165