CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 449 | Y449S | nonsyn | tAt | tCt | 986 | 979 | 0.992901 | 22907-22909 | |
S | 449 | Y449S | nonsyn | tAT | tCA | 986 | 6 | 0.00608519 | 22907-22909 | |
S | 449 | Y449S | nonsyn | tAT | tCG | 986 | 1 | 0.0010142 | 22907-22909 | |
S | 449 | Y449H | nonsyn | Tat | Cat | 852 | 848 | 0.995305 | 22907-22909 | |
S | 449 | Y449H | nonsyn | TaT | CaC | 852 | 4 | 0.00469484 | 22907-22909 | |
S | 449 | Y449N | nonsyn | Tat | Aat | 560 | 560 | 1 | 22907-22909 | |
S | 449 | Y449Y | syn | taT | taC | 451 | 451 | 1 | 22907-22909 | |
S | 449 | Y449del | del | TAT | --- | 49 | 49 | 1 | 22907-22909 | |
S | 449 | Y449D | nonsyn | Tat | Gat | 35 | 35 | 1 | 22907-22909 | |
S | 449 | Y449F | nonsyn | tAt | tTt | 30 | 29 | 0.966667 | 22907-22909 | |
S | 449 | Y449F | nonsyn | tAT | tTC | 30 | 1 | 0.0333333 | 22907-22909 | |
S | 449 | Y449T | nonsyn | TAT | ACA | 27 | 18 | 0.666667 | 22907-22909 | |
S | 449 | Y449T | nonsyn | TAt | ACt | 27 | 8 | 0.296296 | 22907-22909 | |
S | 449 | Y449T | nonsyn | TAT | ACC | 27 | 1 | 0.037037 | 22907-22909 | |
S | 449 | Y449V | nonsyn | TAT | GTA | 20 | 18 | 0.9 | 22907-22909 | |
S | 449 | Y449V | nonsyn | TAt | GTt | 20 | 2 | 0.1 | 22907-22909 | |
S | 449 | Y449X | nonsyn | taT | taA | 18 | 13 | 0.722222 | 22907-22909 | |
S | 449 | Y449X | nonsyn | taT | taG | 18 | 5 | 0.277778 | 22907-22909 | |
S | 449 | Y449K | nonsyn | TaT | AaA | 10 | 10 | 1 | 22907-22909 | |
S | 449 | Y449C | nonsyn | tAt | tGt | 8 | 8 | 1 | 22907-22909 | |
S | 449 | Y449L | nonsyn | TAt | CTt | 6 | 3 | 0.5 | 22907-22909 | |
S | 449 | Y449L | nonsyn | TAT | CTC | 6 | 1 | 0.166667 | 22907-22909 | |
S | 449 | Y449L | nonsyn | TAT | CTG | 6 | 1 | 0.166667 | 22907-22909 | |
S | 449 | Y449L | nonsyn | tAT | tTG | 6 | 1 | 0.166667 | 22907-22909 | |
S | 449 | Y449I | nonsyn | TAT | ATA | 2 | 2 | 1 | 22907-22909 | |
S | 449 | Y449R | nonsyn | TAt | CGt | 1 | 1 | 1 | 22907-22909 | |
S | 449 | Y449A | nonsyn | TAT | GCC | 1 | 1 | 1 | 22907-22909 | |
S | 449 | Y449Q | nonsyn | TaT | CaG | 1 | 1 | 1 | 22907-22909 | |
S | 449 | Y449E | nonsyn | TaT | GaG | 1 | 1 | 1 | 22907-22909 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 449 | Y449S | tAt | tCt | 979 | 986 | All | 0.000187 |
S | 449 | Y449S | tAT | tCA | 6 | 986 | All | 0.000001 |
S | 449 | Y449S | tAT | tCG | 1 | 986 | All | 0 |
S | 449 | Y449S | tAt | tCt | 952 | 952 | B.1.1.7 | 0.000852 |
S | 449 | Y449H | Tat | Cat | 848 | 852 | All | 0.000162 |
S | 449 | Y449H | TaT | CaC | 4 | 852 | All | 0.000001 |
S | 449 | Y449N | Tat | Aat | 560 | 560 | All | 0.000107 |
S | 449 | Y449N | Tat | Aat | 456 | 456 | B.1.621 | 0.040365 |
S | 449 | Y449Y | taT | taC | 451 | 451 | All | 0.000086 |
S | 449 | Y449H | Tat | Cat | 333 | 334 | B.1.1.7 | 0.000298 |
S | 449 | Y449H | TaT | CaC | 1 | 334 | B.1.1.7 | 0.000001 |
S | 449 | Y449H | Tat | Cat | 207 | 207 | C.1.2 | 0.880851 |
S | 449 | Y449H | Tat | Cat | 178 | 178 | A.29 | 0.946809 |
S | 449 | Y449Y | taT | taC | 149 | 149 | B.1.1.7 | 0.000133 |
S | 449 | Y449Y | taT | taC | 111 | 111 | AY.4 | 0.000173 |
S | 449 | Y449del | TAT | --- | 49 | 49 | All | 0.000009 |
S | 449 | Y449Y | taT | taC | 45 | 45 | B.1.221 | 0.003196 |
S | 449 | Y449D | Tat | Gat | 35 | 35 | All | 0.000007 |
S | 449 | Y449Y | taT | taC | 35 | 35 | AY.25 | 0.000211 |
S | 449 | Y449N | Tat | Aat | 33 | 33 | B.1 | 0.000302 |
S | 449 | Y449D | Tat | Gat | 32 | 32 | B.1.1.7 | 0.000029 |
S | 449 | Y449F | tAt | tTt | 29 | 30 | All | 0.000006 |
S | 449 | Y449F | tAT | tTC | 1 | 30 | All | 0 |
S | 449 | Y449N | Tat | Aat | 29 | 29 | B.1.1.7 | 0.000026 |
S | 449 | Y449T | TAT | ACA | 18 | 27 | All | 0.000003 |
S | 449 | Y449T | TAt | ACt | 8 | 27 | All | 0.000002 |
S | 449 | Y449T | TAT | ACC | 1 | 27 | All | 0 |
S | 449 | Y449H | Tat | Cat | 25 | 25 | C.36.3.1 | 0.067935 |
S | 449 | Y449H | Tat | Cat | 21 | 21 | B.1.214.2 | 0.01259 |
S | 449 | Y449V | TAT | GTA | 18 | 20 | All | 0.000003 |
S | 449 | Y449V | TAt | GTt | 2 | 20 | All | 0 |
S | 449 | Y449N | Tat | Aat | 20 | 20 | B.1.576 | 0.018132 |
S | 449 | Y449Y | taT | taC | 19 | 19 | B.1.2 | 0.000167 |
S | 449 | Y449X | taT | taA | 13 | 18 | All | 0.000002 |
S | 449 | Y449X | taT | taG | 5 | 18 | All | 0.000001 |
S | 449 | Y449H | Tat | Cat | 17 | 17 | Q.7 | 0.018889 |
S | 449 | Y449S | tAt | tCt | 16 | 16 | P.1.15 | 0.003717 |
S | 449 | Y449Y | taT | taC | 14 | 14 | B.1.1.294 | 0.017722 |
S | 449 | Y449T | TAT | ACA | 8 | 13 | AY.43 | 0.000035 |
S | 449 | Y449T | TAt | ACt | 5 | 13 | AY.43 | 0.000022 |
S | 449 | Y449del | TAT | --- | 11 | 11 | AY.43 | 0.000049 |
S | 449 | Y449K | TaT | AaA | 10 | 10 | All | 0.000002 |
S | 449 | Y449H | Tat | Cat | 10 | 10 | P.1 | 0.000158 |
S | 449 | Y449V | TAT | GTA | 9 | 9 | AY.20 | 0.00035 |
S | 449 | Y449S | tAt | tCt | 5 | 9 | AY.43 | 0.000022 |
S | 449 | Y449S | tAT | tCA | 4 | 9 | AY.43 | 0.000018 |
S | 449 | Y449C | tAt | tGt | 8 | 8 | All | 0.000002 |
S | 449 | Y449Y | taT | taC | 8 | 8 | B.1.617.2 | 0.00003 |
S | 449 | Y449N | Tat | Aat | 7 | 7 | AY.43 | 0.000031 |
S | 449 | Y449Y | taT | taC | 7 | 7 | B.1 | 0.000064 |
S | 449 | Y449F | tAt | tTt | 7 | 7 | B.1.1 | 0.000127 |
S | 449 | Y449F | tAt | tTt | 7 | 7 | B.1.1.7 | 0.000006 |
S | 449 | Y449H | Tat | Cat | 7 | 7 | B.1.351 | 0.000208 |
S | 449 | Y449L | TAt | CTt | 3 | 6 | All | 0.000001 |
S | 449 | Y449L | tAT | tTG | 1 | 6 | All | 0 |
S | 449 | Y449L | TAT | CTG | 1 | 6 | All | 0 |
S | 449 | Y449L | TAT | CTC | 1 | 6 | All | 0 |
S | 449 | Y449K | TaT | AaA | 6 | 6 | AY.43 | 0.000027 |
S | 449 | Y449X | taT | taA | 5 | 6 | AY.43 | 0.000022 |
S | 449 | Y449X | taT | taG | 1 | 6 | AY.43 | 0.000004 |
S | 449 | Y449del | TAT | --- | 6 | 6 | B.1.1.7 | 0.000005 |
S | 449 | Y449Y | taT | taC | 6 | 6 | B.1.526 | 0.000141 |
S | 449 | Y449T | TAT | ACA | 4 | 6 | B.1.617.2 | 0.000015 |
S | 449 | Y449T | TAt | ACt | 2 | 6 | B.1.617.2 | 0.000008 |
S | 449 | Y449Y | taT | taC | 5 | 5 | AY.44 | 0.00003 |
S | 449 | Y449H | Tat | Cat | 5 | 5 | B | 0.000639 |
S | 449 | Y449H | Tat | Cat | 5 | 5 | B.1 | 0.000046 |
S | 449 | Y449H | Tat | Cat | 5 | 5 | P.1.14 | 0.000239 |
S | 449 | Y449Y | taT | taC | 4 | 4 | 0.222222 | |
S | 449 | Y449L | TAt | CTt | 1 | 4 | 0.055556 | |
S | 449 | Y449L | TAT | CTC | 1 | 4 | 0.055556 | |
S | 449 | Y449L | tAT | tTG | 1 | 4 | 0.055556 | |
S | 449 | Y449L | TAT | CTG | 1 | 4 | 0.055556 | |
S | 449 | Y449Y | taT | taC | 4 | 4 | AY.3 | 0.00004 |
S | 449 | Y449T | TAT | ACA | 4 | 4 | AY.45 | 0.000487 |
S | 449 | Y449del | TAT | --- | 4 | 4 | B.1.617.2 | 0.000015 |
S | 449 | Y449S | tAT | tCA | 2 | 4 | B.1.617.2 | 0.000008 |
S | 449 | Y449S | tAt | tCt | 2 | 4 | B.1.617.2 | 0.000008 |
S | 449 | Y449H | Tat | Cat | 3 | 3 | A | 0.001161 |
S | 449 | Y449Y | taT | taC | 3 | 3 | A.2.5.3 | 0.030928 |
S | 449 | Y449Y | taT | taC | 3 | 3 | AY.113 | 0.000427 |
S | 449 | Y449Y | taT | taC | 3 | 3 | AY.33 | 0.0002 |
S | 449 | Y449H | TaT | CaC | 2 | 3 | AY.42 | 0.00008 |
S | 449 | Y449H | Tat | Cat | 1 | 3 | AY.42 | 0.00004 |
S | 449 | Y449Y | taT | taC | 3 | 3 | AY.43 | 0.000013 |
S | 449 | Y449H | Tat | Cat | 3 | 3 | AY.68 | 0.000821 |
S | 449 | Y449F | tAt | tTt | 3 | 3 | B.1 | 0.000027 |
S | 449 | Y449N | Tat | Aat | 3 | 3 | B.1.351 | 0.000089 |
S | 449 | Y449K | TaT | AaA | 3 | 3 | B.1.617.2 | 0.000011 |
S | 449 | Y449N | Tat | Aat | 3 | 3 | B.1.617.2 | 0.000011 |
S | 449 | Y449X | taT | taA | 3 | 3 | B.1.617.2 | 0.000011 |
S | 449 | Y449del | TAT | --- | 2 | 2 | 0.111111 | |
S | 449 | Y449I | TAT | ATA | 2 | 2 | 0.111111 | |
S | 449 | Y449F | tAt | tTt | 1 | 2 | 0.055556 | |
S | 449 | Y449H | TaT | CaC | 1 | 2 | 0.055556 | |
S | 449 | Y449H | Tat | Cat | 1 | 2 | 0.055556 | |
S | 449 | Y449F | tAT | tTC | 1 | 2 | 0.055556 | |
S | 449 | Y449N | Tat | Aat | 2 | 2 | A.2 | 0.001324 |
S | 449 | Y449I | TAT | ATA | 2 | 2 | All | 0 |
S | 449 | Y449V | TAT | GTA | 2 | 2 | AY.119 | 0.000071 |
S | 449 | Y449V | TAT | GTA | 2 | 2 | AY.26 | 0.000057 |
S | 449 | Y449V | TAT | GTA | 2 | 2 | AY.3 | 0.00002 |
S | 449 | Y449Y | taT | taC | 2 | 2 | AY.42 | 0.00008 |
S | 449 | Y449del | TAT | --- | 2 | 2 | AY.42 | 0.00008 |
S | 449 | Y449Y | taT | taC | 2 | 2 | AY.46 | 0.000208 |
S | 449 | Y449del | TAT | --- | 2 | 2 | AY.9.2 | 0.000073 |
S | 449 | Y449del | TAT | --- | 2 | 2 | B.1 | 0.000018 |
S | 449 | Y449H | Tat | Cat | 2 | 2 | B.1.1 | 0.000036 |
S | 449 | Y449Y | taT | taC | 2 | 2 | B.1.1.284 | 0.000215 |
S | 449 | Y449V | TAt | GTt | 2 | 2 | B.1.1.7 | 0.000002 |
S | 449 | Y449Y | taT | taC | 2 | 2 | B.1.177 | 0.000026 |
S | 449 | Y449Y | taT | taC | 2 | 2 | B.1.258.14 | 0.001961 |
S | 449 | Y449del | TAT | --- | 2 | 2 | B.1.351 | 0.000059 |
S | 449 | Y449Y | taT | taC | 2 | 2 | B.1.427 | 0.000101 |
S | 449 | Y449Y | taT | taC | 2 | 2 | B.1.429 | 0.000047 |
S | 449 | Y449Y | taT | taC | 2 | 2 | B.1.617.1 | 0.000258 |
S | 449 | Y449H | Tat | Cat | 2 | 2 | B.1.617.2 | 0.000008 |
S | 449 | Y449H | Tat | Cat | 2 | 2 | B.1.621 | 0.000177 |
S | 449 | Y449H | Tat | Cat | 2 | 2 | C.1 | 0.004785 |
S | 449 | Y449Q | TaT | CaG | 1 | 1 | 0.055556 | |
S | 449 | Y449X | taT | taG | 1 | 1 | 0.055556 | |
S | 449 | Y449del | TAT | --- | 1 | 1 | A | 0.000387 |
S | 449 | Y449F | tAt | tTt | 1 | 1 | A.2 | 0.000662 |
S | 449 | Y449H | Tat | Cat | 1 | 1 | A.2 | 0.000662 |
S | 449 | Y449H | Tat | Cat | 1 | 1 | A.27 | 0.001656 |
S | 449 | Y449Y | taT | taC | 1 | 1 | A.27 | 0.001656 |
S | 449 | Y449E | TaT | GaG | 1 | 1 | All | 0 |
S | 449 | Y449A | TAT | GCC | 1 | 1 | All | 0 |
S | 449 | Y449R | TAt | CGt | 1 | 1 | All | 0 |
S | 449 | Y449Q | TaT | CaG | 1 | 1 | All | 0 |
S | 449 | Y449V | TAT | GTA | 1 | 1 | AY.100 | 0.000046 |
S | 449 | Y449Y | taT | taC | 1 | 1 | AY.100 | 0.000046 |
S | 449 | Y449del | TAT | --- | 1 | 1 | AY.102 | 0.000027 |
S | 449 | Y449N | Tat | Aat | 1 | 1 | AY.102 | 0.000027 |
S | 449 | Y449S | tAt | tCt | 1 | 1 | AY.102 | 0.000027 |
S | 449 | Y449X | taT | taA | 1 | 1 | AY.102 | 0.000027 |
S | 449 | Y449V | TAT | GTA | 1 | 1 | AY.102 | 0.000027 |
S | 449 | Y449T | TAt | ACt | 1 | 1 | AY.102 | 0.000027 |
S | 449 | Y449F | tAt | tTt | 1 | 1 | AY.102 | 0.000027 |
S | 449 | Y449C | tAt | tGt | 1 | 1 | AY.103 | 0.000006 |
S | 449 | Y449H | Tat | Cat | 1 | 1 | AY.103 | 0.000006 |
S | 449 | Y449del | TAT | --- | 1 | 1 | AY.107 | 0.000466 |
S | 449 | Y449del | TAT | --- | 1 | 1 | AY.108 | 0.001103 |
S | 449 | Y449T | TAT | ACA | 1 | 1 | AY.110 | 0.000113 |
S | 449 | Y449del | TAT | --- | 1 | 1 | AY.113 | 0.000142 |
S | 449 | Y449H | Tat | Cat | 1 | 1 | AY.120 | 0.000037 |
S | 449 | Y449Y | taT | taC | 1 | 1 | AY.21 | 0.001898 |
S | 449 | Y449N | Tat | Aat | 1 | 1 | AY.25 | 0.000006 |
S | 449 | Y449H | Tat | Cat | 1 | 1 | AY.25 | 0.000006 |
S | 449 | Y449X | taT | taA | 1 | 1 | AY.3 | 0.00001 |
S | 449 | Y449F | tAt | tTt | 1 | 1 | AY.34 | 0.000097 |
S | 449 | Y449Y | taT | taC | 1 | 1 | AY.39 | 0.000025 |
S | 449 | Y449F | tAt | tTt | 1 | 1 | AY.39 | 0.000025 |
S | 449 | Y449Y | taT | taC | 1 | 1 | AY.39.1 | 0.00004 |
S | 449 | Y449H | Tat | Cat | 1 | 1 | AY.4 | 0.000002 |
S | 449 | Y449K | TaT | AaA | 1 | 1 | AY.42 | 0.00004 |
S | 449 | Y449H | Tat | Cat | 1 | 1 | AY.43 | 0.000004 |
S | 449 | Y449V | TAT | GTA | 1 | 1 | AY.44 | 0.000006 |
S | 449 | Y449del | TAT | --- | 1 | 1 | AY.44 | 0.000006 |
S | 449 | Y449del | TAT | --- | 1 | 1 | AY.45 | 0.000122 |
S | 449 | Y449Y | taT | taC | 1 | 1 | AY.46.1 | 0.001027 |
S | 449 | Y449T | TAT | ACA | 1 | 1 | AY.46.6 | 0.000072 |
S | 449 | Y449Y | taT | taC | 1 | 1 | AY.46.6 | 0.000072 |
S | 449 | Y449X | taT | taG | 1 | 1 | AY.5 | 0.000021 |
S | 449 | Y449Y | taT | taC | 1 | 1 | AY.5 | 0.000021 |
S | 449 | Y449N | Tat | Aat | 1 | 1 | AY.52 | 0.000814 |
S | 449 | Y449T | TAT | ACC | 1 | 1 | AY.67 | 0.000464 |
S | 449 | Y449del | TAT | --- | 1 | 1 | AY.84 | 0.000437 |
S | 449 | Y449C | tAt | tGt | 1 | 1 | AY.9.2 | 0.000037 |
S | 449 | Y449del | TAT | --- | 1 | 1 | AY.99 | 0.001049 |
S | 449 | Y449N | Tat | Aat | 1 | 1 | B | 0.000128 |
S | 449 | Y449F | tAt | tTt | 1 | 1 | B | 0.000128 |
S | 449 | Y449S | tAT | tCG | 1 | 1 | B.1 | 0.000009 |
S | 449 | Y449C | tAt | tGt | 1 | 1 | B.1 | 0.000009 |
S | 449 | Y449E | TaT | GaG | 1 | 1 | B.1.1 | 0.000018 |
S | 449 | Y449Y | taT | taC | 1 | 1 | B.1.1 | 0.000018 |
S | 449 | Y449D | Tat | Gat | 1 | 1 | B.1.1 | 0.000018 |
S | 449 | Y449X | taT | taG | 1 | 1 | B.1.1 | 0.000018 |
S | 449 | Y449F | tAt | tTt | 1 | 1 | B.1.1.161 | 0.003534 |
S | 449 | Y449X | taT | taA | 1 | 1 | B.1.1.289 | 0.002083 |
S | 449 | Y449H | Tat | Cat | 1 | 1 | B.1.1.294 | 0.001266 |
S | 449 | Y449del | TAT | --- | 1 | 1 | B.1.1.306 | 0.000438 |
S | 449 | Y449D | Tat | Gat | 1 | 1 | B.1.1.372 | 0.000689 |
S | 449 | Y449H | Tat | Cat | 1 | 1 | B.1.1.402 | 0.011111 |
S | 449 | Y449F | tAt | tTt | 1 | 1 | B.1.1.409 | 0.002833 |
S | 449 | Y449L | TAt | CTt | 1 | 1 | B.1.1.7 | 0.000001 |
S | 449 | Y449C | tAt | tGt | 1 | 1 | B.1.1.7 | 0.000001 |
S | 449 | Y449F | tAt | tTt | 1 | 1 | B.1.1.70 | 0.000341 |
S | 449 | Y449del | TAT | --- | 1 | 1 | B.1.177 | 0.000013 |
S | 449 | Y449H | Tat | Cat | 1 | 1 | B.1.177.34 | 0.052632 |
S | 449 | Y449del | TAT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
S | 449 | Y449H | Tat | Cat | 1 | 1 | B.1.2 | 0.000009 |
S | 449 | Y449del | TAT | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 449 | Y449N | Tat | Aat | 1 | 1 | B.1.2 | 0.000009 |
S | 449 | Y449del | TAT | --- | 1 | 1 | B.1.214.2 | 0.0006 |
S | 449 | Y449Y | taT | taC | 1 | 1 | B.1.240 | 0.000216 |
S | 449 | Y449H | Tat | Cat | 1 | 1 | B.1.243 | 0.00007 |
S | 449 | Y449D | Tat | Gat | 1 | 1 | B.1.243 | 0.00007 |
S | 449 | Y449L | TAt | CTt | 1 | 1 | B.1.258 | 0.000067 |
S | 449 | Y449H | Tat | Cat | 1 | 1 | B.1.268 | 0.010417 |
S | 449 | Y449Y | taT | taC | 1 | 1 | B.1.351 | 0.00003 |
S | 449 | Y449C | tAt | tGt | 1 | 1 | B.1.36.16 | 0.001425 |
S | 449 | Y449X | taT | taG | 1 | 1 | B.1.362 | 0.001541 |
S | 449 | Y449H | Tat | Cat | 1 | 1 | B.1.429 | 0.000024 |
S | 449 | Y449X | taT | taA | 1 | 1 | B.1.470 | 0.001404 |
S | 449 | Y449C | tAt | tGt | 1 | 1 | B.1.501 | 0.007353 |
S | 449 | Y449S | tAt | tCt | 1 | 1 | B.1.508 | 0.025641 |
S | 449 | Y449C | tAt | tGt | 1 | 1 | B.1.526 | 0.000024 |
S | 449 | Y449del | TAT | --- | 1 | 1 | B.1.526 | 0.000024 |
S | 449 | Y449N | Tat | Aat | 1 | 1 | B.1.582 | 0.000491 |
S | 449 | Y449X | taT | taA | 1 | 1 | B.1.596 | 0.000087 |
S | 449 | Y449H | Tat | Cat | 1 | 1 | B.1.617.1 | 0.000129 |
S | 449 | Y449R | TAt | CGt | 1 | 1 | B.1.617.2 | 0.000004 |
S | 449 | Y449A | TAT | GCC | 1 | 1 | B.1.617.2 | 0.000004 |
S | 449 | Y449F | tAt | tTt | 1 | 1 | B.1.617.2 | 0.000004 |
S | 449 | Y449del | TAT | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 449 | Y449Y | taT | taC | 1 | 1 | B.1.630 | 0.005236 |
S | 449 | Y449F | tAt | tTt | 1 | 1 | B.55 | 0.00295 |
S | 449 | Y449H | Tat | Cat | 1 | 1 | C.35 | 0.000774 |
S | 449 | Y449Y | taT | taC | 1 | 1 | D.2 | 0.000075 |
S | 449 | Y449C | tAt | tGt | 1 | 1 | D.2 | 0.000075 |
S | 449 | Y449Y | taT | taC | 1 | 1 | P.1 | 0.000016 |
S | 449 | Y449S | tAt | tCt | 1 | 1 | P.1 | 0.000016 |
S | 449 | Y449N | Tat | Aat | 1 | 1 | P.1 | 0.000016 |
S | 449 | Y449del | TAT | --- | 1 | 1 | P.1.1 | 0.000318 |
S | 449 | Y449F | tAt | tTt | 1 | 1 | P.1.1 | 0.000318 |
S | 449 | Y449del | TAT | --- | 1 | 1 | P.1.15 | 0.000232 |
S | 449 | Y449H | Tat | Cat | 1 | 1 | P.1.7 | 0.000319 |
S | 449 | Y449Y | taT | taC | 1 | 1 | P.2 | 0.000187 |
S | 449 | Y449H | Tat | Cat | 1 | 1 | P.3 | 0.001595 |
S | 449 | Y449Y | taT | taC | 1 | 1 | Q.1 | 0.000126 |
S | 449 | Y449S | tAt | tCt | 1 | 1 | Q.1 | 0.000126 |
S | 449 | Y449H | Tat | Cat | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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