CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 445

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S445V445VsyngtTgtC4092380.58190722895-22897
S445V445VsyngtTgtA4091140.27872922895-22897
S445V445VsyngtTgtG409570.13936422895-22897
S445V445AnonsyngTtgCt360360122895-22897
S445V445InonsynGttAtt2442430.99590222895-22897
S445V445InonsynGtTAtA24410.0040983622895-22897
S445V445FnonsynGttTtt209209122895-22897
S445V445deldelGTT---1515122895-22897
S445V445GnonsyngTtgGt1111122895-22897
S445V445DnonsyngTtgAt1010122895-22897
S445V445del1delgtTgt-950.55555622895-22897
S445V445del1delgTtg-t920.22222222895-22897
S445V445del1delgTTg-N910.11111122895-22897
S445V445del1delGTt-At910.11111122895-22897
S445V445LnonsynGttCtt55122895-22897
S445V445del2delgTTg--33122895-22897
S445V445YnonsynGTtTAt22122895-22897
S445V445TnonsynGTTACA11122895-22897
S445V445CnonsynGTtTGt11122895-22897
S445V445SnonsynGTtTCt11122895-22897

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S445V445VgtTgtC238409All0.000046
S445V445VgtTgtA114409All0.000022
S445V445VgtTgtG57409All0.000011
S445V445AgTtgCt360360All0.000069
S445V445IGttAtt243244All0.000046
S445V445IGtTAtA1244All0
S445V445FGttTtt209209All0.00004
S445V445AgTtgCt106106B.1.1.70.000095
S445V445IGttAtt105105AY.40.000163
S445V445VgtTgtC8282B.1.177.830.121481
S445V445VgtTgtA7576B.1.1.5190.002978
S445V445VgtTgtC176B.1.1.5190.00004
S445V445FGttTtt4747B.1.1.70.000042
S445V445VgtTgtG3945B.1.20.000343
S445V445VgtTgtC545B.1.20.000044
S445V445VgtTgtA145B.1.20.000009
S445V445AgTtgCt3838AY.40.000059
S445V445IGttAtt3838B.1.1.70.000034
S445V445IGttAtt3333B.1.617.20.000124
S445V445FGttTtt3131AY.40.000048
S445V445AgTtgCt3030N.100.882353
S445V445VgtTgtC2424AY.1030.000149
S445V445VgtTgtC1724B.1.617.20.000064
S445V445VgtTgtA424B.1.617.20.000015
S445V445VgtTgtG324B.1.617.20.000011
S445V445AgTtgCt2323B.1.1770.000303
S445V445AgTtgCt2222AY.330.001469
S445V445VgtTgtC2121AY.1000.000966
S445V445AgTtgCt2121AY.440.000128
S445V445VgtTgtC1921B.1.1770.00025
S445V445VgtTgtA221B.1.1770.000026
S445V445AgTtgCt1919AY.430.000084
S445V445VgtTgtC1016B.1.1.70.000009
S445V445VgtTgtA516B.1.1.70.000004
S445V445VgtTgtG116B.1.1.70.000001
S445V445delGTT---1515All0.000003
S445V445VgtTgtC1014B.10.000092
S445V445VgtTgtG214B.10.000018
S445V445VgtTgtA214B.10.000018
S445V445FGttTtt1414B.1.617.20.000053
S445V445FGttTtt1212AY.430.000053
S445V445AgTtgCt1212B.1.617.20.000045
S445V445GgTtgGt1111All0.000002
S445V445FGttTtt1111AY.1030.000068
S445V445DgTtgAt1010All0.000002
S445V445IGttAtt1010AY.330.000668
S445V445VgtTgtC1010AY.40.000016
S445V445del1gtTgt-59All0.000001
S445V445del1gTtg-t29All0
S445V445del1GTt-At19All0
S445V445del1gTTg-N19All0
S445V445FGttTtt88AY.440.000049
S445V445FGttTtt88B.10.000073
S445V445AgTtgCt88B.1.617.10.001032
S445V445AgTtgCt77B.1.1.330.002946
S445V445FGttTtt66AY.420.000241
S445V445AgTtgCt66AY.9.20.00022
S445V445LGttCtt55All0.000001
S445V445AgTtgCt55AY.1170.000423
S445V445FGttTtt55AY.1210.000677
S445V445AgTtgCt55AY.450.000608
S445V445IGttAtt55AY.98.10.000242
S445V445delGTT---55B.1.1.70.000004
S445V445VgtTgtA55B.1.177.600.001092
S445V445IGttAtt55B.1.6210.000443
S445V445VgtTgtC55C.370.00058
S445V445AgTtgCt44AY.1030.000025
S445V445FGttTtt44AY.200.000155
S445V445VgtTgtC34AY.430.000013
S445V445VgtTgtA14AY.430.000004
S445V445VgtTgtC44AY.46.60.000289
S445V445FGttTtt44AY.610.000419
S445V445DgTtgAt44B.10.000037
S445V445VgtTgtC24B.1.10.000036
S445V445VgtTgtA14B.1.10.000018
S445V445VgtTgtG14B.1.10.000018
S445V445IGttAtt44B.1.1600.000125
S445V445VgtTgtC44Q.10.000505
S445V445del2gTTg--33All0.000001
S445V445VgtTgtC23AY.1020.000053
S445V445VgtTgtA13AY.1020.000027
S445V445AgTtgCt33AY.1130.000427
S445V445AgTtgCt33AY.260.000085
S445V445AgTtgCt33AY.30.00003
S445V445AgTtgCt33AY.420.000121
S445V445IGttAtt33AY.430.000013
S445V445VgtTgtA23AY.440.000012
S445V445VgtTgtG13AY.440.000006
S445V445FGttTtt33AY.450.000365
S445V445FGttTtt33AY.50.000062
S445V445FGttTtt33AY.940.001328
S445V445AgTtgCt33B.10.000027
S445V445FGttTtt33B.1.20.000026
S445V445IGttAtt33B.1.2340.000396
S445V445VgtTgtC33B.1.5960.000261
S445V445AgTtgCt33D.20.000225
S445V445AgTtgCt33P.10.000047
S445V445delGTT---220.111111
S445V445AgTtgCt22A.10.000564
S445V445YGTtTAt22All0
S445V445IGttAtt22AY.1020.000053
S445V445AgTtgCt22AY.1100.000225
S445V445FGttTtt22AY.1180.000125
S445V445VgtTgtA22AY.1210.000271
S445V445VgtTgtC22AY.250.000012
S445V445IGttAtt22AY.260.000057
S445V445FGttTtt22AY.30.00002
S445V445VgtTgtC22AY.330.000134
S445V445VgtTgtA12AY.460.000104
S445V445VgtTgtG12AY.460.000104
S445V445FGttTtt22AY.46.30.001867
S445V445VgtTgtG22AY.470.000062
S445V445FGttTtt22AY.5.30.000675
S445V445FGttTtt22AY.5.40.000553
S445V445LGttCtt22AY.60.000082
S445V445del1GTt-At12AY.750.000056
S445V445del1gTtg-t12AY.750.000056
S445V445FGttTtt22AY.99.20.000184
S445V445IGttAtt12B.10.000009
S445V445IGtTAtA12B.10.000009
S445V445FGttTtt22B.1.10.000036
S445V445AgTtgCt22B.1.1.1890.003026
S445V445AgTtgCt22B.1.1.5190.000079
S445V445DgTtgAt22B.1.1.70.000002
S445V445FGttTtt22B.1.1770.000026
S445V445IGttAtt22B.1.177.120.000303
S445V445IGttAtt22B.1.20.000018
S445V445IGttAtt22B.1.2580.000133
S445V445FGttTtt22B.1.2580.000133
S445V445AgTtgCt22B.1.3510.000059
S445V445FGttTtt22B.1.3510.000059
S445V445FGttTtt22B.1.3610.002577
S445V445VgtTgtC12B.1.4290.000024
S445V445VgtTgtG12B.1.4290.000024
S445V445FGttTtt22B.1.617.10.000258
S445V445VgtTgtA12D.20.000075
S445V445VgtTgtC12D.20.000075
S445V445IGttAtt22Q.80.00033
S445V445delGTT---11A0.000387
S445V445FGttTtt11A.2.50.000499
S445V445AgTtgCt11AD.20.000219
S445V445SGTtTCt11All0
S445V445TGTTACA11All0
S445V445CGTtTGt11All0
S445V445IGttAtt11AS.20.015625
S445V445FGttTtt11AY.1020.000027
S445V445IGttAtt11AY.1030.000006
S445V445del2gTTg--11AY.1070.000466
S445V445FGttTtt11AY.1070.000466
S445V445del1gtTgt-11AY.1080.001103
S445V445FGttTtt11AY.110.001339
S445V445IGttAtt11AY.1100.000113
S445V445AgTtgCt11AY.1110.000183
S445V445IGttAtt11AY.1110.000183
S445V445VgtTgtC11AY.1110.000183
S445V445IGttAtt11AY.1170.000085
S445V445DgTtgAt11AY.1170.000085
S445V445IGttAtt11AY.1180.000063
S445V445AgTtgCt11AY.200.000039
S445V445FGttTtt11AY.250.000006
S445V445AgTtgCt11AY.250.000006
S445V445GgTtgGt11AY.250.000006
S445V445VgtTgtC11AY.260.000028
S445V445IGttAtt11AY.290.000016
S445V445DgTtgAt11AY.300.000396
S445V445VgtTgtA11AY.340.000097
S445V445AgTtgCt11AY.34.10.00051
S445V445VgtTgtC11AY.360.000148
S445V445del1gTtg-t11AY.390.000025
S445V445AgTtgCt11AY.390.000025
S445V445IGttAtt11AY.390.000025
S445V445VgtTgtA11AY.390.000025
S445V445GgTtgGt11AY.390.000025
S445V445GgTtgGt11AY.40.000002
S445V445FGttTtt11AY.4.30.000842
S445V445VgtTgtG11AY.420.00004
S445V445del1gtTgt-11AY.430.000004
S445V445del2gTTg--11AY.430.000004
S445V445IGttAtt11AY.440.000006
S445V445IGttAtt11AY.450.000122
S445V445FGttTtt11AY.460.000104
S445V445AgTtgCt11AY.50.000021
S445V445FGttTtt11AY.530.000288
S445V445AgTtgCt11AY.550.000917
S445V445IGttAtt11AY.550.000917
S445V445VgtTgtA11AY.590.00053
S445V445FGttTtt11AY.590.00053
S445V445IGttAtt11AY.60.000041
S445V445AgTtgCt11AY.610.000105
S445V445IGttAtt11AY.610.000105
S445V445AgTtgCt11AY.670.000464
S445V445VgtTgtA11AY.70.000196
S445V445VgtTgtG11AY.7.10.000113
S445V445AgTtgCt11AY.7.20.000559
S445V445FGttTtt11AY.770.001127
S445V445AgTtgCt11AY.840.000437
S445V445FGttTtt11AY.840.000437
S445V445VgtTgtA11AY.870.000833
S445V445VgtTgtC11AY.9.20.000037
S445V445FGttTtt11AY.9.20.000037
S445V445FGttTtt11AY.980.000079
S445V445VgtTgtC11AY.98.10.000048
S445V445AgTtgCt11AY.98.10.000048
S445V445AgTtgCt11AY.990.001049
S445V445CGTtTGt11B.10.000009
S445V445GgTtgGt11B.10.000009
S445V445YGTtTAt11B.10.000009
S445V445del1gTTg-N11B.10.000009
S445V445delGTT---11B.10.000009
S445V445SGTtTCt11B.10.000009
S445V445IGttAtt11B.1.10.000018
S445V445VgtTgtA11B.1.1.1580.012195
S445V445IGttAtt11B.1.1.2160.00089
S445V445VgtTgtA11B.1.1.2220.000204
S445V445VgtTgtC11B.1.1.3060.000438
S445V445IGttAtt11B.1.1.3110.000358
S445V445FGttTtt11B.1.1.3170.000412
S445V445AgTtgCt11B.1.1.3170.000412
S445V445IGttAtt11B.1.1.4160.000905
S445V445VgtTgtA11B.1.1.4320.001266
S445V445IGttAtt11B.1.1.4340.000349
S445V445AgTtgCt11B.1.1.500.000679
S445V445IGttAtt11B.1.1.500.000679
S445V445FGttTtt11B.1.1.5190.00004
S445V445LGttCtt11B.1.1.70.000001
S445V445GgTtgGt11B.1.1.70.000001
S445V445del1gtTgt-11B.1.1.70.000001
S445V445VgtTgtA11B.1.1.990.02381
S445V445VgtTgtA11B.1.1600.000031
S445V445IGttAtt11B.1.1770.000013
S445V445del2gTTg--11B.1.1770.000013
S445V445LGttCtt11B.1.177.210.000076
S445V445delGTT---11B.1.177.40.000211
S445V445AgTtgCt11B.1.177.70.000165
S445V445FGttTtt11B.1.177.70.000165
S445V445VgtTgtC11B.1.177.720.00339
S445V445IGttAtt11B.1.177.90.001332
S445V445GgTtgGt11B.1.20.000009
S445V445AgTtgCt11B.1.20.000009
S445V445delGTT---11B.1.20.000009
S445V445VgtTgtC11B.1.214.20.0006
S445V445DgTtgAt11B.1.2210.000071
S445V445AgTtgCt11B.1.2210.000071
S445V445GgTtgGt11B.1.2400.000216
S445V445IGttAtt11B.1.2430.00007
S445V445TGTTACA11B.1.2580.000067
S445V445VgtTgtG11B.1.3510.00003
S445V445delGTT---11B.1.351.20.000303
S445V445AgTtgCt11B.1.351.20.000303
S445V445FGttTtt11B.1.4290.000024
S445V445GgTtgGt11B.1.438.10.000107
S445V445DgTtgAt11B.1.4970.000315
S445V445FGttTtt11B.1.5250.000113
S445V445LGttCtt11B.1.5260.000024
S445V445del1gtTgt-11B.1.5260.000024
S445V445VgtTgtG11B.1.5260.000024
S445V445VgtTgtC11B.1.5640.000426
S445V445IGttAtt11B.1.5680.001111
S445V445FGttTtt11B.1.5770.000687
S445V445VgtTgtC11B.1.5820.000491
S445V445GgTtgGt11B.1.617.20.000004
S445V445delGTT---11B.1.617.20.000004
S445V445YGTtTAt11B.1.617.20.000004
S445V445FGttTtt11B.1.6190.000871
S445V445delGTT---11B.1.6200.000946
S445V445VgtTgtG11B.1.6300.005236
S445V445delGTT---11B.340.013699
S445V445AgTtgCt11B.400.000364
S445V445IGttAtt11B.400.000364
S445V445GgTtgGt11B.60.00091
S445V445VgtTgtA11C.10.002392
S445V445FGttTtt11C.370.000116
S445V445FGttTtt11P.10.000016
S445V445VgtTgtG11P.1.10.000318
S445V445GgTtgGt11P.1.10.000318
S445V445del1gtTgt-11P.1.10.000318
S445V445FGttTtt11P.1.150.000232
S445V445AgTtgCt11P.1.160.000374
S445V445AgTtgCt11P.1.60.001946