CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 440 | N440K | nonsyn | aaT | aaG | 8720 | 6105 | 0.700115 | 22880-22882 | |
S | 440 | N440K | nonsyn | aaT | aaA | 8720 | 2615 | 0.299885 | 22880-22882 | |
S | 440 | N440S | nonsyn | aAt | aGt | 1030 | 1026 | 0.996117 | 22880-22882 | |
S | 440 | N440S | nonsyn | aAT | aGC | 1030 | 2 | 0.00194175 | 22880-22882 | |
S | 440 | N440S | nonsyn | AAt | TCt | 1030 | 1 | 0.000970874 | 22880-22882 | |
S | 440 | N440S | nonsyn | AAT | TCG | 1030 | 1 | 0.000970874 | 22880-22882 | |
S | 440 | N440N | syn | aaT | aaC | 618 | 618 | 1 | 22880-22882 | |
S | 440 | N440Y | nonsyn | Aat | Tat | 282 | 281 | 0.996454 | 22880-22882 | |
S | 440 | N440Y | nonsyn | AaT | TaC | 282 | 1 | 0.0035461 | 22880-22882 | |
S | 440 | N440T | nonsyn | aAt | aCt | 109 | 107 | 0.981651 | 22880-22882 | |
S | 440 | N440T | nonsyn | aAT | aCG | 109 | 2 | 0.0183486 | 22880-22882 | |
S | 440 | N440D | nonsyn | Aat | Gat | 29 | 29 | 1 | 22880-22882 | |
S | 440 | N440I | nonsyn | aAt | aTt | 29 | 25 | 0.862069 | 22880-22882 | |
S | 440 | N440I | nonsyn | aAT | aTA | 29 | 4 | 0.137931 | 22880-22882 | |
S | 440 | N440del1 | del | aaT | aa- | 20 | 18 | 0.9 | 22880-22882 | |
S | 440 | N440del1 | del | Aat | -at | 20 | 2 | 0.1 | 22880-22882 | |
S | 440 | N440del | del | AAT | --- | 18 | 18 | 1 | 22880-22882 | |
S | 440 | N440F | nonsyn | AAt | TTt | 9 | 9 | 1 | 22880-22882 | |
S | 440 | N440H | nonsyn | Aat | Cat | 8 | 8 | 1 | 22880-22882 | |
S | 440 | N440E | nonsyn | AaT | GaG | 6 | 6 | 1 | 22880-22882 | |
S | 440 | N440L | nonsyn | AAt | CTt | 5 | 2 | 0.4 | 22880-22882 | |
S | 440 | N440L | nonsyn | AAT | CTA | 5 | 1 | 0.2 | 22880-22882 | |
S | 440 | N440L | nonsyn | AAT | TTG | 5 | 1 | 0.2 | 22880-22882 | |
S | 440 | N440L | nonsyn | AAT | TTA | 5 | 1 | 0.2 | 22880-22882 | |
S | 440 | N440X | nonsyn | AaT | TaG | 3 | 2 | 0.666667 | 22880-22882 | |
S | 440 | N440R | nonsyn | aAT | aGA | 3 | 1 | 0.333333 | 22880-22882 | |
S | 440 | N440X | nonsyn | AaT | TaA | 3 | 1 | 0.333333 | 22880-22882 | |
S | 440 | N440R | nonsyn | aAT | aGG | 3 | 1 | 0.333333 | 22880-22882 | |
S | 440 | N440R | nonsyn | AAT | CGA | 3 | 1 | 0.333333 | 22880-22882 | |
S | 440 | N440M | nonsyn | aAT | aTG | 2 | 2 | 1 | 22880-22882 | |
S | 440 | N440C | nonsyn | AAT | TGC | 2 | 1 | 0.5 | 22880-22882 | |
S | 440 | N440C | nonsyn | AAt | TGt | 2 | 1 | 0.5 | 22880-22882 | |
S | 440 | N440Q | nonsyn | AaT | CaA | 1 | 1 | 1 | 22880-22882 | |
S | 440 | N440A | nonsyn | AAt | GCt | 1 | 1 | 1 | 22880-22882 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 440 | N440K | aaT | aaG | 6105 | 8720 | All | 0.001168 |
S | 440 | N440K | aaT | aaA | 2615 | 8720 | All | 0.0005 |
S | 440 | N440K | aaT | aaA | 2238 | 2238 | B.1.628 | 0.788584 |
S | 440 | N440K | aaT | aaG | 1548 | 1548 | B.1.619.1 | 0.992944 |
S | 440 | N440K | aaT | aaG | 1382 | 1382 | B.1.36.29 | 0.714951 |
S | 440 | N440S | aAt | aGt | 1026 | 1030 | All | 0.000196 |
S | 440 | N440S | aAT | aGC | 2 | 1030 | All | 0 |
S | 440 | N440S | AAT | TCG | 1 | 1030 | All | 0 |
S | 440 | N440S | AAt | TCt | 1 | 1030 | All | 0 |
S | 440 | N440K | aaT | aaG | 992 | 992 | B.1.619 | 0.864111 |
S | 440 | N440S | aAt | aGt | 969 | 969 | B.1.1.7 | 0.000867 |
S | 440 | N440K | aaT | aaG | 821 | 821 | B.1.1.420 | 0.825956 |
S | 440 | N440N | aaT | aaC | 618 | 618 | All | 0.000118 |
S | 440 | N440K | aaT | aaG | 379 | 379 | B.1.625 | 0.891765 |
S | 440 | N440Y | Aat | Tat | 281 | 282 | All | 0.000054 |
S | 440 | N440Y | AaT | TaC | 1 | 282 | All | 0 |
S | 440 | N440N | aaT | aaC | 279 | 279 | B.1.2 | 0.002457 |
S | 440 | N440K | aaT | aaG | 173 | 250 | B.1 | 0.001585 |
S | 440 | N440K | aaT | aaA | 77 | 250 | B.1 | 0.000705 |
S | 440 | N440K | aaT | aaA | 243 | 243 | B.1.631 | 0.818182 |
S | 440 | N440K | aaT | aaG | 210 | 210 | B.1.634 | 0.719178 |
S | 440 | N440Y | Aat | Tat | 188 | 188 | AY.4 | 0.000293 |
S | 440 | N440K | aaT | aaG | 140 | 140 | B.1.2 | 0.001233 |
S | 440 | N440T | aAt | aCt | 107 | 109 | All | 0.00002 |
S | 440 | N440T | aAT | aCG | 2 | 109 | All | 0 |
S | 440 | N440N | aaT | aaC | 109 | 109 | AY.62 | 0.047495 |
S | 440 | N440K | aaT | aaG | 98 | 98 | B.1.36 | 0.014298 |
S | 440 | N440K | aaT | aaG | 66 | 69 | B.1.1 | 0.001197 |
S | 440 | N440K | aaT | aaA | 3 | 69 | B.1.1 | 0.000054 |
S | 440 | N440K | aaT | aaG | 58 | 58 | B.1.1.216 | 0.051647 |
S | 440 | N440K | aaT | aaG | 38 | 39 | B.1.1.7 | 0.000034 |
S | 440 | N440K | aaT | aaA | 1 | 39 | B.1.1.7 | 0.000001 |
S | 440 | N440N | aaT | aaC | 32 | 32 | B.1.1.7 | 0.000029 |
S | 440 | N440K | aaT | aaG | 32 | 32 | C.37 | 0.003714 |
S | 440 | N440D | Aat | Gat | 29 | 29 | All | 0.000006 |
S | 440 | N440I | aAt | aTt | 25 | 29 | All | 0.000005 |
S | 440 | N440I | aAT | aTA | 4 | 29 | All | 0.000001 |
S | 440 | N440T | aAt | aCt | 29 | 29 | B.1.617.2 | 0.000109 |
S | 440 | N440N | aaT | aaC | 25 | 25 | B.1.617.2 | 0.000094 |
S | 440 | N440N | aaT | aaC | 23 | 23 | B.1.177 | 0.000303 |
S | 440 | N440del1 | aaT | aa- | 18 | 20 | All | 0.000003 |
S | 440 | N440del1 | Aat | -at | 2 | 20 | All | 0 |
S | 440 | N440T | aAt | aCt | 19 | 19 | B.1.1.7 | 0.000017 |
S | 440 | N440K | aaT | aaG | 19 | 19 | B.1.36.17 | 0.009387 |
S | 440 | N440del | AAT | --- | 18 | 18 | All | 0.000003 |
S | 440 | N440T | aAt | aCt | 17 | 17 | AY.44 | 0.000103 |
S | 440 | N440N | aaT | aaC | 17 | 17 | B.1.427 | 0.000858 |
S | 440 | N440Y | Aat | Tat | 15 | 15 | A.2.5.2 | 0.023585 |
S | 440 | N440N | aaT | aaC | 15 | 15 | AY.4 | 0.000023 |
S | 440 | N440Y | Aat | Tat | 15 | 15 | B.1.1.7 | 0.000013 |
S | 440 | N440K | aaT | aaG | 15 | 15 | B.1.456 | 0.04902 |
S | 440 | N440K | aaT | aaA | 14 | 14 | B.1.627 | 0.028283 |
S | 440 | N440N | aaT | aaC | 13 | 13 | AY.3 | 0.000129 |
S | 440 | N440S | aAt | aGt | 13 | 13 | B.1.177 | 0.000171 |
S | 440 | N440N | aaT | aaC | 13 | 13 | B.1.429 | 0.000306 |
S | 440 | N440S | aAt | aGt | 12 | 12 | AY.4 | 0.000019 |
S | 440 | N440Y | Aat | Tat | 12 | 12 | B.1 | 0.00011 |
S | 440 | N440K | aaT | aaG | 11 | 12 | B.1.596 | 0.000959 |
S | 440 | N440K | aaT | aaA | 1 | 12 | B.1.596 | 0.000087 |
S | 440 | N440T | aAt | aCt | 11 | 11 | B.1.351.2 | 0.003328 |
S | 440 | N440K | aaT | aaA | 10 | 11 | P.1.12 | 0.00484 |
S | 440 | N440K | aaT | aaG | 1 | 11 | P.1.12 | 0.000484 |
S | 440 | N440N | aaT | aaC | 10 | 10 | AY.99.2 | 0.000922 |
S | 440 | N440Y | Aat | Tat | 10 | 10 | B.1.1.37 | 0.001929 |
S | 440 | N440del1 | aaT | aa- | 10 | 10 | B.1.36.29 | 0.005173 |
S | 440 | N440F | AAt | TTt | 9 | 9 | All | 0.000002 |
S | 440 | N440K | aaT | aaG | 9 | 9 | AY.101 | 0.004414 |
S | 440 | N440I | aAt | aTt | 7 | 9 | B.1 | 0.000064 |
S | 440 | N440I | aAT | aTA | 2 | 9 | B.1 | 0.000018 |
S | 440 | N440H | Aat | Cat | 8 | 8 | All | 0.000002 |
S | 440 | N440N | aaT | aaC | 8 | 8 | AY.44 | 0.000049 |
S | 440 | N440D | Aat | Gat | 8 | 8 | B.1.1.7 | 0.000007 |
S | 440 | N440N | aaT | aaC | 7 | 7 | B.1.351 | 0.000208 |
S | 440 | N440Y | Aat | Tat | 7 | 7 | B.1.617.2 | 0.000026 |
S | 440 | N440E | AaT | GaG | 6 | 6 | All | 0.000001 |
S | 440 | N440N | aaT | aaC | 6 | 6 | AY.29 | 0.000095 |
S | 440 | N440T | aAt | aCt | 6 | 6 | AY.43 | 0.000027 |
S | 440 | N440K | aaT | aaG | 6 | 6 | B.1.128 | 0.003812 |
S | 440 | N440K | aaT | aaG | 6 | 6 | C.1.2 | 0.025532 |
S | 440 | N440L | AAt | CTt | 2 | 5 | All | 0 |
S | 440 | N440L | AAT | TTA | 1 | 5 | All | 0 |
S | 440 | N440L | AAT | CTA | 1 | 5 | All | 0 |
S | 440 | N440L | AAT | TTG | 1 | 5 | All | 0 |
S | 440 | N440N | aaT | aaC | 5 | 5 | AY.25 | 0.00003 |
S | 440 | N440E | AaT | GaG | 5 | 5 | B.1 | 0.000046 |
S | 440 | N440Y | Aat | Tat | 5 | 5 | B.1.1 | 0.000091 |
S | 440 | N440K | aaT | aaG | 4 | 5 | B.1.247 | 0.059701 |
S | 440 | N440K | aaT | aaA | 1 | 5 | B.1.247 | 0.014925 |
S | 440 | N440N | aaT | aaC | 5 | 5 | B.1.399 | 0.009671 |
S | 440 | N440Y | Aat | Tat | 4 | 4 | AY.103 | 0.000025 |
S | 440 | N440I | aAt | aTt | 4 | 4 | AY.4 | 0.000006 |
S | 440 | N440T | aAt | aCt | 4 | 4 | AY.40 | 0.003857 |
S | 440 | N440N | aaT | aaC | 4 | 4 | AY.43 | 0.000018 |
S | 440 | N440K | aaT | aaG | 4 | 4 | AY.45 | 0.000487 |
S | 440 | N440N | aaT | aaC | 4 | 4 | B.1 | 0.000037 |
S | 440 | N440F | AAt | TTt | 4 | 4 | B.1 | 0.000037 |
S | 440 | N440S | aAt | aGt | 2 | 4 | B.1 | 0.000018 |
S | 440 | N440S | AAt | TCt | 1 | 4 | B.1 | 0.000009 |
S | 440 | N440S | AAT | TCG | 1 | 4 | B.1 | 0.000009 |
S | 440 | N440I | aAt | aTt | 4 | 4 | B.1.1.7 | 0.000004 |
S | 440 | N440K | aaT | aaG | 4 | 4 | B.1.214 | 0.014652 |
S | 440 | N440K | aaT | aaG | 4 | 4 | B.1.638 | 0.210526 |
S | 440 | N440T | aAt | aCt | 4 | 4 | B.1.638 | 0.210526 |
S | 440 | N440X | AaT | TaG | 2 | 3 | All | 0 |
S | 440 | N440R | AAT | CGA | 1 | 3 | All | 0 |
S | 440 | N440R | aAT | aGA | 1 | 3 | All | 0 |
S | 440 | N440X | AaT | TaA | 1 | 3 | All | 0 |
S | 440 | N440R | aAT | aGG | 1 | 3 | All | 0 |
S | 440 | N440K | aaT | aaG | 3 | 3 | AT.1 | 0.015385 |
S | 440 | N440Y | Aat | Tat | 3 | 3 | AY.102 | 0.00008 |
S | 440 | N440N | aaT | aaC | 3 | 3 | AY.103 | 0.000019 |
S | 440 | N440N | aaT | aaC | 3 | 3 | AY.119 | 0.000106 |
S | 440 | N440T | aAt | aCt | 3 | 3 | AY.3 | 0.00003 |
S | 440 | N440S | aAt | aGt | 3 | 3 | AY.3 | 0.00003 |
S | 440 | N440K | aaT | aaG | 3 | 3 | AY.4 | 0.000005 |
S | 440 | N440S | aAt | aGt | 3 | 3 | AY.43 | 0.000013 |
S | 440 | N440K | aaT | aaA | 2 | 3 | AY.43 | 0.000009 |
S | 440 | N440K | aaT | aaG | 1 | 3 | AY.43 | 0.000004 |
S | 440 | N440K | aaT | aaA | 3 | 3 | AY.44 | 0.000018 |
S | 440 | N440Y | Aat | Tat | 3 | 3 | AY.44 | 0.000018 |
S | 440 | N440H | Aat | Cat | 3 | 3 | B.1 | 0.000027 |
S | 440 | N440D | Aat | Gat | 3 | 3 | B.1 | 0.000027 |
S | 440 | N440T | aAT | aCG | 2 | 3 | B.1 | 0.000018 |
S | 440 | N440T | aAt | aCt | 1 | 3 | B.1 | 0.000009 |
S | 440 | N440I | aAt | aTt | 2 | 3 | B.1.1 | 0.000036 |
S | 440 | N440S | aAt | aGt | 2 | 3 | B.1.1 | 0.000036 |
S | 440 | N440I | aAT | aTA | 1 | 3 | B.1.1 | 0.000018 |
S | 440 | N440S | aAT | aGC | 1 | 3 | B.1.1 | 0.000018 |
S | 440 | N440K | aaT | aaA | 3 | 3 | B.1.1.317 | 0.001235 |
S | 440 | N440K | aaT | aaG | 3 | 3 | B.1.1.409 | 0.008499 |
S | 440 | N440N | aaT | aaC | 3 | 3 | B.1.1.519 | 0.000119 |
S | 440 | N440del | AAT | --- | 3 | 3 | B.1.1.7 | 0.000003 |
S | 440 | N440K | aaT | aaG | 3 | 3 | B.1.160 | 0.000094 |
S | 440 | N440K | aaT | aaG | 3 | 3 | B.1.170 | 0.012931 |
S | 440 | N440D | Aat | Gat | 3 | 3 | B.1.221 | 0.000213 |
S | 440 | N440K | aaT | aaG | 3 | 3 | B.1.260 | 0.010033 |
S | 440 | N440K | aaT | aaG | 3 | 3 | B.1.36.16 | 0.004274 |
S | 440 | N440K | aaT | aaG | 3 | 3 | B.1.462 | 0.021739 |
S | 440 | N440S | aAt | aGt | 3 | 3 | B.1.617.2 | 0.000011 |
S | 440 | N440K | aaT | aaG | 3 | 3 | B.1.9.5 | 0.017045 |
S | 440 | N440K | aaT | aaG | 3 | 3 | C.14 | 0.012987 |
S | 440 | N440del | AAT | --- | 2 | 2 | 0.111111 | |
S | 440 | N440S | aAt | aGt | 1 | 2 | 0.055556 | |
S | 440 | N440C | AAt | TGt | 1 | 2 | 0.055556 | |
S | 440 | N440C | AAT | TGC | 1 | 2 | 0.055556 | |
S | 440 | N440S | aAT | aGC | 1 | 2 | 0.055556 | |
S | 440 | N440Y | AaT | TaC | 1 | 2 | 0.055556 | |
S | 440 | N440Y | Aat | Tat | 1 | 2 | 0.055556 | |
S | 440 | N440M | aAT | aTG | 2 | 2 | All | 0 |
S | 440 | N440C | AAT | TGC | 1 | 2 | All | 0 |
S | 440 | N440C | AAt | TGt | 1 | 2 | All | 0 |
S | 440 | N440T | aAt | aCt | 2 | 2 | AY.102 | 0.000053 |
S | 440 | N440N | aaT | aaC | 2 | 2 | AY.102 | 0.000053 |
S | 440 | N440S | aAt | aGt | 2 | 2 | AY.103 | 0.000012 |
S | 440 | N440S | aAt | aGt | 2 | 2 | AY.23 | 0.000139 |
S | 440 | N440K | aaT | aaA | 2 | 2 | AY.25 | 0.000012 |
S | 440 | N440Y | Aat | Tat | 2 | 2 | AY.26 | 0.000057 |
S | 440 | N440N | aaT | aaC | 2 | 2 | AY.39 | 0.000049 |
S | 440 | N440Y | Aat | Tat | 2 | 2 | AY.43 | 0.000009 |
S | 440 | N440D | Aat | Gat | 2 | 2 | AY.43 | 0.000009 |
S | 440 | N440I | aAt | aTt | 2 | 2 | AY.47 | 0.000062 |
S | 440 | N440T | aAt | aCt | 2 | 2 | AY.49 | 0.00639 |
S | 440 | N440K | aaT | aaG | 2 | 2 | B | 0.000256 |
S | 440 | N440X | AaT | TaG | 2 | 2 | B.1 | 0.000018 |
S | 440 | N440del1 | aaT | aa- | 2 | 2 | B.1 | 0.000018 |
S | 440 | N440L | AAt | CTt | 1 | 2 | B.1 | 0.000009 |
S | 440 | N440L | AAT | TTG | 1 | 2 | B.1 | 0.000009 |
S | 440 | N440K | aaT | aaG | 2 | 2 | B.1.1.28 | 0.000622 |
S | 440 | N440Y | Aat | Tat | 2 | 2 | B.1.1.316 | 0.00185 |
S | 440 | N440S | aAt | aGt | 2 | 2 | B.1.1.519 | 0.000079 |
S | 440 | N440F | AAt | TTt | 2 | 2 | B.1.1.7 | 0.000002 |
S | 440 | N440K | aaT | aaG | 2 | 2 | B.1.1.83 | 0.00542 |
S | 440 | N440K | aaT | aaG | 2 | 2 | B.1.157 | 0.00597 |
S | 440 | N440D | Aat | Gat | 2 | 2 | B.1.177.4 | 0.000422 |
S | 440 | N440K | aaT | aaA | 1 | 2 | B.1.177.73 | 0.000566 |
S | 440 | N440K | aaT | aaG | 1 | 2 | B.1.177.73 | 0.000566 |
S | 440 | N440L | AAt | CTt | 1 | 2 | B.1.221 | 0.000071 |
S | 440 | N440L | AAT | CTA | 1 | 2 | B.1.221 | 0.000071 |
S | 440 | N440I | aAT | aTA | 1 | 2 | B.1.221 | 0.000071 |
S | 440 | N440I | aAt | aTt | 1 | 2 | B.1.221 | 0.000071 |
S | 440 | N440K | aaT | aaG | 2 | 2 | B.1.369 | 0.00057 |
S | 440 | N440K | aaT | aaG | 2 | 2 | B.1.460 | 0.035714 |
S | 440 | N440K | aaT | aaG | 2 | 2 | B.1.465 | 0.007605 |
S | 440 | N440N | aaT | aaC | 2 | 2 | B.1.541 | 0.00885 |
S | 440 | N440N | aaT | aaC | 2 | 2 | B.1.596 | 0.000174 |
S | 440 | N440K | aaT | aaA | 2 | 2 | B.1.617.1 | 0.000258 |
S | 440 | N440K | aaT | aaG | 1 | 2 | B.1.617.2 | 0.000004 |
S | 440 | N440K | aaT | aaA | 1 | 2 | B.1.617.2 | 0.000004 |
S | 440 | N440N | aaT | aaC | 2 | 2 | B.1.621 | 0.000177 |
S | 440 | N440K | aaT | aaG | 2 | 2 | C.36.3.1 | 0.005435 |
S | 440 | N440K | aaT | aaG | 2 | 2 | P.1.16 | 0.000748 |
S | 440 | N440N | aaT | aaC | 1 | 1 | 0.055556 | |
S | 440 | N440del | AAT | --- | 1 | 1 | A | 0.000387 |
S | 440 | N440Y | Aat | Tat | 1 | 1 | A.2.5 | 0.000499 |
S | 440 | N440K | aaT | aaG | 1 | 1 | A.2.5 | 0.000499 |
S | 440 | N440K | aaT | aaG | 1 | 1 | A.23 | 0.010526 |
S | 440 | N440Q | AaT | CaA | 1 | 1 | All | 0 |
S | 440 | N440A | AAt | GCt | 1 | 1 | All | 0 |
S | 440 | N440N | aaT | aaC | 1 | 1 | AT.1 | 0.005128 |
S | 440 | N440Y | Aat | Tat | 1 | 1 | AW.1 | 0.003049 |
S | 440 | N440I | aAt | aTt | 1 | 1 | AY.109 | 0.00074 |
S | 440 | N440D | Aat | Gat | 1 | 1 | AY.113 | 0.000142 |
S | 440 | N440S | aAt | aGt | 1 | 1 | AY.116.1 | 0.000311 |
S | 440 | N440N | aaT | aaC | 1 | 1 | AY.116.1 | 0.000311 |
S | 440 | N440T | aAt | aCt | 1 | 1 | AY.117 | 0.000085 |
S | 440 | N440S | aAt | aGt | 1 | 1 | AY.118 | 0.000063 |
S | 440 | N440D | Aat | Gat | 1 | 1 | AY.118 | 0.000063 |
S | 440 | N440N | aaT | aaC | 1 | 1 | AY.120 | 0.000037 |
S | 440 | N440T | aAt | aCt | 1 | 1 | AY.120.1 | 0.000321 |
S | 440 | N440K | aaT | aaA | 1 | 1 | AY.13 | 0.000161 |
S | 440 | N440S | aAt | aGt | 1 | 1 | AY.14 | 0.000088 |
S | 440 | N440N | aaT | aaC | 1 | 1 | AY.16 | 0.00038 |
S | 440 | N440N | aaT | aaC | 1 | 1 | AY.23 | 0.00007 |
S | 440 | N440Y | Aat | Tat | 1 | 1 | AY.25 | 0.000006 |
S | 440 | N440S | aAt | aGt | 1 | 1 | AY.26 | 0.000028 |
S | 440 | N440T | aAt | aCt | 1 | 1 | AY.26 | 0.000028 |
S | 440 | N440K | aaT | aaA | 1 | 1 | AY.29 | 0.000016 |
S | 440 | N440H | Aat | Cat | 1 | 1 | AY.3.1 | 0.000085 |
S | 440 | N440N | aaT | aaC | 1 | 1 | AY.39.1 | 0.00004 |
S | 440 | N440Y | Aat | Tat | 1 | 1 | AY.39.1 | 0.00004 |
S | 440 | N440D | Aat | Gat | 1 | 1 | AY.39.1.1 | 0.000725 |
S | 440 | N440T | aAt | aCt | 1 | 1 | AY.4 | 0.000002 |
S | 440 | N440del | AAT | --- | 1 | 1 | AY.4 | 0.000002 |
S | 440 | N440D | Aat | Gat | 1 | 1 | AY.4.2 | 0.000022 |
S | 440 | N440N | aaT | aaC | 1 | 1 | AY.4.2 | 0.000022 |
S | 440 | N440D | Aat | Gat | 1 | 1 | AY.4.5 | 0.000107 |
S | 440 | N440Y | Aat | Tat | 1 | 1 | AY.4.5 | 0.000107 |
S | 440 | N440T | aAt | aCt | 1 | 1 | AY.4.5 | 0.000107 |
S | 440 | N440Y | Aat | Tat | 1 | 1 | AY.42 | 0.00004 |
S | 440 | N440I | aAt | aTt | 1 | 1 | AY.43 | 0.000004 |
S | 440 | N440F | AAt | TTt | 1 | 1 | AY.43 | 0.000004 |
S | 440 | N440S | aAt | aGt | 1 | 1 | AY.44 | 0.000006 |
S | 440 | N440N | aaT | aaC | 1 | 1 | AY.45 | 0.000122 |
S | 440 | N440T | aAt | aCt | 1 | 1 | AY.46.4 | 0.000165 |
S | 440 | N440K | aaT | aaA | 1 | 1 | AY.47 | 0.000031 |
S | 440 | N440del | AAT | --- | 1 | 1 | AY.5 | 0.000021 |
S | 440 | N440Y | Aat | Tat | 1 | 1 | AY.5 | 0.000021 |
S | 440 | N440N | aaT | aaC | 1 | 1 | AY.54 | 0.000095 |
S | 440 | N440N | aaT | aaC | 1 | 1 | AY.58 | 0.000907 |
S | 440 | N440S | aAt | aGt | 1 | 1 | AY.6 | 0.000041 |
S | 440 | N440K | aaT | aaA | 1 | 1 | AY.62 | 0.000436 |
S | 440 | N440N | aaT | aaC | 1 | 1 | AY.75 | 0.000056 |
S | 440 | N440I | aAt | aTt | 1 | 1 | AY.80 | 0.001129 |
S | 440 | N440S | aAt | aGt | 1 | 1 | AY.9.2 | 0.000037 |
S | 440 | N440N | aaT | aaC | 1 | 1 | AY.91 | 0.00073 |
S | 440 | N440N | aaT | aaC | 1 | 1 | AY.92 | 0.000287 |
S | 440 | N440S | aAt | aGt | 1 | 1 | AY.98.1 | 0.000048 |
S | 440 | N440K | aaT | aaG | 1 | 1 | AY.99.2 | 0.000092 |
S | 440 | N440del | AAT | --- | 1 | 1 | B | 0.000128 |
S | 440 | N440N | aaT | aaC | 1 | 1 | B | 0.000128 |
S | 440 | N440M | aAT | aTG | 1 | 1 | B.1 | 0.000009 |
S | 440 | N440R | AAT | CGA | 1 | 1 | B.1 | 0.000009 |
S | 440 | N440X | AaT | TaA | 1 | 1 | B.1.1 | 0.000018 |
S | 440 | N440L | AAT | TTA | 1 | 1 | B.1.1 | 0.000018 |
S | 440 | N440R | aAT | aGG | 1 | 1 | B.1.1 | 0.000018 |
S | 440 | N440del1 | aaT | aa- | 1 | 1 | B.1.1 | 0.000018 |
S | 440 | N440M | aAT | aTG | 1 | 1 | B.1.1 | 0.000018 |
S | 440 | N440N | aaT | aaC | 1 | 1 | B.1.1 | 0.000018 |
S | 440 | N440F | AAt | TTt | 1 | 1 | B.1.1 | 0.000018 |
S | 440 | N440T | aAt | aCt | 1 | 1 | B.1.1 | 0.000018 |
S | 440 | N440S | aAt | aGt | 1 | 1 | B.1.1.1 | 0.000327 |
S | 440 | N440K | aaT | aaA | 1 | 1 | B.1.1.117 | 0.009709 |
S | 440 | N440N | aaT | aaC | 1 | 1 | B.1.1.128 | 0.007092 |
S | 440 | N440K | aaT | aaA | 1 | 1 | B.1.1.161 | 0.003534 |
S | 440 | N440K | aaT | aaG | 1 | 1 | B.1.1.174 | 0.003378 |
S | 440 | N440T | aAt | aCt | 1 | 1 | B.1.1.189 | 0.001513 |
S | 440 | N440K | aaT | aaG | 1 | 1 | B.1.1.200 | 0.007463 |
S | 440 | N440K | aaT | aaG | 1 | 1 | B.1.1.254 | 0.011236 |
S | 440 | N440K | aaT | aaG | 1 | 1 | B.1.1.279 | 0.001121 |
S | 440 | N440S | aAt | aGt | 1 | 1 | B.1.1.291 | 0.000742 |
S | 440 | N440D | Aat | Gat | 1 | 1 | B.1.1.298 | 0.000862 |
S | 440 | N440K | aaT | aaG | 1 | 1 | B.1.1.304 | 0.002809 |
S | 440 | N440K | aaT | aaG | 1 | 1 | B.1.1.307 | 0.002532 |
S | 440 | N440K | aaT | aaG | 1 | 1 | B.1.1.311 | 0.000358 |
S | 440 | N440K | aaT | aaG | 1 | 1 | B.1.1.326 | 0.001761 |
S | 440 | N440Y | Aat | Tat | 1 | 1 | B.1.1.326 | 0.001761 |
S | 440 | N440K | aaT | aaG | 1 | 1 | B.1.1.348 | 0.000796 |
S | 440 | N440K | aaT | aaG | 1 | 1 | B.1.1.37 | 0.000193 |
S | 440 | N440N | aaT | aaC | 1 | 1 | B.1.1.372 | 0.000689 |
S | 440 | N440N | aaT | aaC | 1 | 1 | B.1.1.389 | 0.006061 |
S | 440 | N440K | aaT | aaG | 1 | 1 | B.1.1.417 | 0.002703 |
S | 440 | N440T | aAt | aCt | 1 | 1 | B.1.1.434 | 0.000349 |
S | 440 | N440K | aaT | aaG | 1 | 1 | B.1.1.448 | 0.002033 |
S | 440 | N440K | aaT | aaA | 1 | 1 | B.1.1.459 | 0.015385 |
S | 440 | N440K | aaT | aaG | 1 | 1 | B.1.1.56 | 0.017857 |
S | 440 | N440K | aaT | aaG | 1 | 1 | B.1.1.57 | 0.011494 |
S | 440 | N440R | aAT | aGA | 1 | 1 | B.1.1.7 | 0.000001 |
S | 440 | N440del1 | aaT | aa- | 1 | 1 | B.1.1.7 | 0.000001 |
S | 440 | N440H | Aat | Cat | 1 | 1 | B.1.1.7 | 0.000001 |
S | 440 | N440S | aAt | aGt | 1 | 1 | B.1.177.33 | 0.001645 |
S | 440 | N440del | AAT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
S | 440 | N440Y | Aat | Tat | 1 | 1 | B.1.177.57 | 0.000281 |
S | 440 | N440del | AAT | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 440 | N440D | Aat | Gat | 1 | 1 | B.1.2 | 0.000009 |
S | 440 | N440del1 | aaT | aa- | 1 | 1 | B.1.214 | 0.003663 |
S | 440 | N440del | AAT | --- | 1 | 1 | B.1.214.2 | 0.0006 |
S | 440 | N440K | aaT | aaG | 1 | 1 | B.1.214.2 | 0.0006 |
S | 440 | N440Q | AaT | CaA | 1 | 1 | B.1.221 | 0.000071 |
S | 440 | N440K | aaT | aaA | 1 | 1 | B.1.221 | 0.000071 |
S | 440 | N440H | Aat | Cat | 1 | 1 | B.1.221 | 0.000071 |
S | 440 | N440I | aAt | aTt | 1 | 1 | B.1.222 | 0.001692 |
S | 440 | N440H | Aat | Cat | 1 | 1 | B.1.236 | 0.002053 |
S | 440 | N440del1 | aaT | aa- | 1 | 1 | B.1.247 | 0.014925 |
S | 440 | N440del | AAT | --- | 1 | 1 | B.1.258 | 0.000067 |
S | 440 | N440A | AAt | GCt | 1 | 1 | B.1.258 | 0.000067 |
S | 440 | N440del | AAT | --- | 1 | 1 | B.1.258.17 | 0.000104 |
S | 440 | N440K | aaT | aaA | 1 | 1 | B.1.320 | 0.001245 |
S | 440 | N440H | Aat | Cat | 1 | 1 | B.1.351 | 0.00003 |
S | 440 | N440K | aaT | aaG | 1 | 1 | B.1.351 | 0.00003 |
S | 440 | N440del | AAT | --- | 1 | 1 | B.1.351.2 | 0.000303 |
S | 440 | N440K | aaT | aaG | 1 | 1 | B.1.36.10 | 0.004785 |
S | 440 | N440K | aaT | aaG | 1 | 1 | B.1.36.19 | 0.009259 |
S | 440 | N440Y | Aat | Tat | 1 | 1 | B.1.36.19 | 0.009259 |
S | 440 | N440K | aaT | aaG | 1 | 1 | B.1.36.2 | 0.010753 |
S | 440 | N440K | aaT | aaG | 1 | 1 | B.1.36.22 | 0.001208 |
S | 440 | N440K | aaT | aaG | 1 | 1 | B.1.36.24 | 0.006173 |
S | 440 | N440K | aaT | aaG | 1 | 1 | B.1.36.31 | 0.001751 |
S | 440 | N440I | aAt | aTt | 1 | 1 | B.1.36.37 | 0.002778 |
S | 440 | N440K | aaT | aaA | 1 | 1 | B.1.367 | 0.000792 |
S | 440 | N440K | aaT | aaA | 1 | 1 | B.1.399 | 0.001934 |
S | 440 | N440K | aaT | aaG | 1 | 1 | B.1.427 | 0.00005 |
S | 440 | N440Y | Aat | Tat | 1 | 1 | B.1.429 | 0.000024 |
S | 440 | N440K | aaT | aaG | 1 | 1 | B.1.432 | 0.011236 |
S | 440 | N440del1 | aaT | aa- | 1 | 1 | B.1.468 | 0.005714 |
S | 440 | N440D | Aat | Gat | 1 | 1 | B.1.486 | 0.111111 |
S | 440 | N440del1 | Aat | -at | 1 | 1 | B.1.525 | 0.000113 |
S | 440 | N440D | Aat | Gat | 1 | 1 | B.1.526 | 0.000024 |
S | 440 | N440K | aaT | aaG | 1 | 1 | B.1.533 | 0.009615 |
S | 440 | N440K | aaT | aaG | 1 | 1 | B.1.548 | 0.035714 |
S | 440 | N440K | aaT | aaG | 1 | 1 | B.1.561 | 0.000397 |
S | 440 | N440F | AAt | TTt | 1 | 1 | B.1.577 | 0.000687 |
S | 440 | N440del1 | aaT | aa- | 1 | 1 | B.1.617.2 | 0.000004 |
S | 440 | N440del | AAT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
S | 440 | N440E | AaT | GaG | 1 | 1 | B.1.619 | 0.000871 |
S | 440 | N440del | AAT | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 440 | N440N | aaT | aaC | 1 | 1 | B.1.630 | 0.005236 |
S | 440 | N440K | aaT | aaA | 1 | 1 | B.1.637 | 0.000073 |
S | 440 | N440del | AAT | --- | 1 | 1 | B.34 | 0.013699 |
S | 440 | N440K | aaT | aaG | 1 | 1 | B.4.1 | 0.018868 |
S | 440 | N440Y | Aat | Tat | 1 | 1 | B.52 | 0.010101 |
S | 440 | N440S | aAt | aGt | 1 | 1 | B.6.8 | 0.008264 |
S | 440 | N440N | aaT | aaC | 1 | 1 | C.37 | 0.000116 |
S | 440 | N440K | aaT | aaG | 1 | 1 | C.37.1 | 0.002618 |
S | 440 | N440D | Aat | Gat | 1 | 1 | N.5 | 0.001767 |
S | 440 | N440K | aaT | aaG | 1 | 1 | P.1 | 0.000016 |
S | 440 | N440del1 | Aat | -at | 1 | 1 | P.1.1 | 0.000318 |
S | 440 | N440K | aaT | aaA | 1 | 1 | P.1.10 | 0.000269 |
S | 440 | N440N | aaT | aaC | 1 | 1 | P.1.15 | 0.000232 |
S | 440 | N440D | Aat | Gat | 1 | 1 | P.1.15 | 0.000232 |
S | 440 | N440K | aaT | aaG | 1 | 1 | P.2 | 0.000187 |
S | 440 | N440N | aaT | aaC | 1 | 1 | Q.8 | 0.000165 |
S | 440 | N440N | aaT | aaC | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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