CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 439

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	439	N439K		nonsyn	aaC	aaA	36642	36346	0.991922	22877-22879
S	439	N439K		nonsyn	aaC	aaG	36642	296	0.00807816	22877-22879
S	439	N439N		syn	aaC	aaT	1238	1238	1	22877-22879
S	439	N439I		nonsyn	aAc	aTc	26	14	0.538462	22877-22879
S	439	N439I		nonsyn	aAC	aTT	26	7	0.269231	22877-22879
S	439	N439I		nonsyn	aAC	aTA	26	5	0.192308	22877-22879
S	439	N439del		del	AAC	---	21	21	1	22877-22879
S	439	N439S		nonsyn	aAc	aGc	14	12	0.857143	22877-22879
S	439	N439S		nonsyn	aAC	aGT	14	2	0.142857	22877-22879
S	439	N439T		nonsyn	aAc	aCc	11	7	0.636364	22877-22879
S	439	N439T		nonsyn	aAC	aCA	11	2	0.181818	22877-22879
S	439	N439T		nonsyn	aAC	aCT	11	2	0.181818	22877-22879
S	439	N439D		nonsyn	Aac	Gac	10	7	0.7	22877-22879
S	439	N439D		nonsyn	AaC	GaT	10	3	0.3	22877-22879
S	439	N439Y		nonsyn	Aac	Tac	7	7	1	22877-22879
S	439	N439del1		del	aaC	aa-	4	3	0.75	22877-22879
S	439	N439V		nonsyn	AAc	GTc	4	2	0.5	22877-22879
S	439	N439V		nonsyn	AAC	GTG	4	2	0.5	22877-22879
S	439	N439del1		del	Aac	-ac	4	1	0.25	22877-22879
S	439	N439M		nonsyn	aAC	aTG	3	3	1	22877-22879
S	439	N439del2		del	aAC	a--	2	2	1	22877-22879
S	439	N439H		nonsyn	Aac	Cac	2	2	1	22877-22879
S	439	N439E		nonsyn	AaC	GaG	2	2	1	22877-22879
S	439	N439G		nonsyn	AAc	GGc	2	1	0.5	22877-22879
S	439	N439G		nonsyn	AAC	GGT	2	1	0.5	22877-22879
S	439	N439F		nonsyn	AAc	TTc	1	1	1	22877-22879
S	439	N439X		nonsyn	AaC	TaA	1	1	1	22877-22879
S	439	N439R		nonsyn	aAC	aGG	1	1	1	22877-22879

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	439	N439K	aaC	aaA	36346	36642	All	0.006952
S	439	N439K	aaC	aaG	296	36642	All	0.000057
S	439	N439K	aaC	aaA	14441	14441	B.1.258	0.961004
S	439	N439K	aaC	aaA	9241	9241	B.1.258.17	0.960803
S	439	N439K	aaC	aaA	2466	2466	B.1.258.11	0.977408
S	439	N439K	aaC	aaA	2358	2358	B.1.466.2	0.922535
S	439	N439N	aaC	aaT	1238	1238	All	0.000237
S	439	N439K	aaC	aaA	1009	1009	B.1.258.14	0.989216
S	439	N439K	aaC	aaA	608	608	B.1.258.16	0.99509
S	439	N439K	aaC	aaA	578	578	B.1.258.3	0.968174
S	439	N439K	aaC	aaA	573	573	B.1.222	0.969543
S	439	N439K	aaC	aaA	515	515	B.1.258.7	0.984704
S	439	N439K	aaC	aaA	483	483	AU.1	0.611392
S	439	N439K	aaC	aaA	406	406	AU.2	0.983051
S	439	N439K	aaC	aaA	392	395	B.1	0.003591
S	439	N439K	aaC	aaG	3	395	B.1	0.000027
S	439	N439K	aaC	aaA	383	383	AU.3	0.808017
S	439	N439K	aaC	aaA	375	375	B.1.258.22	1
S	439	N439K	aaC	aaA	273	273	B.1.480	0.679104
S	439	N439K	aaC	aaA	269	269	B.1.258.4	0.927586
S	439	N439K	aaC	aaA	214	214	B.1.258.2	0.963964
S	439	N439N	aaC	aaT	205	205	B.1.1.7	0.000184
S	439	N439K	aaC	aaA	200	200	B.1.258.9	1
S	439	N439K	aaC	aaG	178	178	AV.1	0.89899
S	439	N439K	aaC	aaA	141	141	B.1.258.19	1
S	439	N439K	aaC	aaA	138	138	B.1.466.1	0.992806
S	439	N439N	aaC	aaT	130	130	P.2	0.024263
S	439	N439K	aaC	aaA	129	129	B.1.258.21	1
S	439	N439K	aaC	aaA	124	124	B.1.258.12	0.976378
S	439	N439N	aaC	aaT	119	119	AY.4	0.000185
S	439	N439N	aaC	aaT	113	113	AY.103	0.000702
S	439	N439K	aaC	aaA	113	113	B.1.258.5	0.991228
S	439	N439K	aaC	aaA	93	93	B.1.258.24	1
S	439	N439K	aaC	aaA	79	92	B.1.1.7	0.000071
S	439	N439K	aaC	aaG	13	92	B.1.1.7	0.000012
S	439	N439K	aaC	aaA	88	88	B.1.258.10	1
S	439	N439K	aaC	aaG	50	78	B.1.1	0.000907
S	439	N439K	aaC	aaA	28	78	B.1.1	0.000508
S	439	N439N	aaC	aaT	67	67	AY.26	0.001897
S	439	N439K	aaC	aaA	63	63	B.1.258.20	1
S	439	N439N	aaC	aaT	62	62	AY.20	0.00241
S	439	N439K	aaC	aaA	61	61	B.1.1.526	0.216312
S	439	N439K	aaC	aaA	53	53	B.1.258.15	1
S	439	N439K	aaC	aaA	49	49	B.1.258.6	0.960784
S	439	N439N	aaC	aaT	44	44	AY.98.1	0.002131
S	439	N439N	aaC	aaT	35	35	B.1.1.222	0.00714
S	439	N439N	aaC	aaT	34	34	B.1.617.2	0.000128
S	439	N439K	aaC	aaA	33	33	B.1.1.524	0.6875
S	439	N439N	aaC	aaT	31	31	AY.116	0.00889
S	439	N439K	aaC	aaA	29	29	B.1.160	0.000904
S	439	N439K	aaC	aaA	29	29	B.1.177	0.000382
S	439	N439K	aaC	aaA	29	29	B.1.258.23	0.690476
S	439	N439K	aaC	aaA	28	28	B.1.609	0.013423
S	439	N439N	aaC	aaT	27	27	AY.44	0.000164
S	439	N439I	aAc	aTc	14	26	All	0.000003
S	439	N439I	aAC	aTT	7	26	All	0.000001
S	439	N439I	aAC	aTA	5	26	All	0.000001
S	439	N439N	aaC	aaT	26	26	B.1	0.000238
S	439	N439N	aaC	aaT	25	25	B.1.36.22	0.030193
S	439	N439N	aaC	aaT	24	24	B.1.525	0.002716
S	439	N439K	aaC	aaA	24	24	G.1	1
S	439	N439del	AAC	---	21	21	All	0.000004
S	439	N439K	aaC	aaG	15	20	AY.4	0.000023
S	439	N439K	aaC	aaA	5	20	AY.4	0.000008
S	439	N439K	aaC	aaA	19	19	B.1.462	0.137681
S	439	N439N	aaC	aaT	18	18	AY.45	0.00219
S	439	N439N	aaC	aaT	17	17	AY.3	0.000169
S	439	N439N	aaC	aaT	16	16	AY.46.6	0.001155
S	439	N439S	aAc	aGc	12	14	All	0.000002
S	439	N439S	aAC	aGT	2	14	All	0
S	439	N439N	aaC	aaT	14	14	AY.25	0.000084
S	439	N439N	aaC	aaT	14	14	AY.43	0.000062
S	439	N439N	aaC	aaT	14	14	AY.99.2	0.00129
S	439	N439I	aAc	aTc	5	13	B.1	0.000046
S	439	N439I	aAC	aTT	4	13	B.1	0.000037
S	439	N439I	aAC	aTA	4	13	B.1	0.000037
S	439	N439K	aaC	aaA	12	12	B.1.474	0.022814
S	439	N439K	aaC	aaA	12	12	B.1.628	0.004228
S	439	N439T	aAc	aCc	7	11	All	0.000001
S	439	N439T	aAC	aCT	2	11	All	0
S	439	N439T	aAC	aCA	2	11	All	0
S	439	N439D	Aac	Gac	7	10	All	0.000001
S	439	N439D	AaC	GaT	3	10	All	0.000001
S	439	N439N	aaC	aaT	10	10	AY.5	0.000206
S	439	N439K	aaC	aaA	10	10	B.1.258.18	1
S	439	N439N	aaC	aaT	10	10	B.1.351.2	0.003026
S	439	N439N	aaC	aaT	10	10	P.1	0.000158
S	439	N439N	aaC	aaT	9	9	AY.75	0.000504
S	439	N439K	aaC	aaA	9	9	B.1.36	0.001313
S	439	N439K	aaC	aaA	5	8	B	0.000639
S	439	N439K	aaC	aaG	3	8	B	0.000383
S	439	N439T	aAc	aCc	5	8	B.1	0.000046
S	439	N439T	aAC	aCT	2	8	B.1	0.000018
S	439	N439T	aAC	aCA	1	8	B.1	0.000009
S	439	N439N	aaC	aaT	8	8	B.1.1	0.000145
S	439	N439N	aaC	aaT	8	8	B.1.1.241	0.016563
S	439	N439K	aaC	aaG	8	8	B.1.1.28	0.00249
S	439	N439N	aaC	aaT	8	8	B.1.2	0.00007
S	439	N439K	aaC	aaA	7	7	A	0.002709
S	439	N439Y	Aac	Tac	7	7	All	0.000001
S	439	N439K	aaC	aaA	7	7	B.1.177.73	0.003964
S	439	N439K	aaC	aaA	7	7	B.1.177.86	0.001284
S	439	N439N	aaC	aaT	7	7	B.1.517	0.002989
S	439	N439K	aaC	aaA	7	7	B.1.632	0.04698
S	439	N439K	aaC	aaA	7	7	B.4.1	0.132075
S	439	N439K	aaC	aaG	4	6	B.1.1.519	0.000159
S	439	N439K	aaC	aaA	2	6	B.1.1.519	0.000079
S	439	N439K	aaC	aaA	6	6	B.1.469	0.021661
S	439	N439K	aaC	aaA	5	5	B.1.1.216	0.004452
S	439	N439K	aaC	aaA	5	5	B.1.221	0.000355
S	439	N439N	aaC	aaT	5	5	B.1.543	0.05
S	439	N439K	aaC	aaA	4	5	C.37	0.000464
S	439	N439K	aaC	aaG	1	5	C.37	0.000116
S	439	N439D	Aac	Gac	3	4		0.166667
S	439	N439V	AAc	GTc	2	4		0.111111
S	439	N439V	AAC	GTG	2	4		0.111111
S	439	N439D	AaC	GaT	1	4		0.055556
S	439	N439del1	aaC	aa-	3	4	All	0.000001
S	439	N439V	AAc	GTc	2	4	All	0
S	439	N439V	AAC	GTG	2	4	All	0
S	439	N439del1	Aac	-ac	1	4	All	0
S	439	N439N	aaC	aaT	4	4	AY.29	0.000063
S	439	N439N	aaC	aaT	4	4	AY.4.2	0.000087
S	439	N439N	aaC	aaT	4	4	B.1.1.28	0.001245
S	439	N439K	aaC	aaA	4	4	B.1.1.389	0.024242
S	439	N439del	AAC	---	4	4	B.1.1.7	0.000004
S	439	N439N	aaC	aaT	4	4	B.1.351	0.000119
S	439	N439K	aaC	aaA	4	4	B.1.36.29	0.002069
S	439	N439K	aaC	aaA	4	4	B.1.375	0.003279
S	439	N439K	aaC	aaA	4	4	B.1.590	0.018182
S	439	N439K	aaC	aaA	4	4	B.1.600	0.023392
S	439	N439K	aaC	aaA	3	4	B.1.617.2	0.000011
S	439	N439K	aaC	aaG	1	4	B.1.617.2	0.000004
S	439	N439K	aaC	aaA	4	4	P.7	0.017467
S	439	N439M	aAC	aTG	3	3	All	0.000001
S	439	N439N	aaC	aaT	3	3	AY.102	0.00008
S	439	N439N	aaC	aaT	3	3	AY.116.1	0.000934
S	439	N439N	aaC	aaT	3	3	AY.119	0.000106
S	439	N439N	aaC	aaT	3	3	AY.3.1	0.000256
S	439	N439N	aaC	aaT	3	3	AY.30	0.001187
S	439	N439K	aaC	aaA	3	3	AY.43	0.000013
S	439	N439N	aaC	aaT	3	3	AY.47	0.000093
S	439	N439N	aaC	aaT	3	3	B.1.1.63	0.001157
S	439	N439S	aAc	aGc	3	3	B.1.1.7	0.000003
S	439	N439K	aaC	aaA	3	3	B.1.177.6	0.00293
S	439	N439K	aaC	aaA	3	3	B.1.411	0.011111
S	439	N439N	aaC	aaT	3	3	B.1.427	0.000151
S	439	N439K	aaC	aaA	3	3	B.1.460	0.053571
S	439	N439N	aaC	aaT	3	3	B.1.599	0.010949
S	439	N439N	aaC	aaT	3	3	C.37	0.000348
S	439	N439N	aaC	aaT	3	3	P.1.14	0.000143
S	439	N439E	AaC	GaG	2	2		0.111111
S	439	N439M	aAC	aTG	2	2		0.111111
S	439	N439del	AAC	---	2	2		0.111111
S	439	N439I	aAc	aTc	2	2		0.111111
S	439	N439K	aaC	aaG	2	2		0.111111
S	439	N439G	AAC	GGT	1	2		0.055556
S	439	N439G	AAc	GGc	1	2		0.055556
S	439	N439S	aAc	aGc	1	2		0.055556
S	439	N439S	aAC	aGT	1	2		0.055556
S	439	N439H	Aac	Cac	2	2	All	0
S	439	N439E	AaC	GaG	2	2	All	0
S	439	N439del2	aAC	a--	2	2	All	0
S	439	N439G	AAC	GGT	1	2	All	0
S	439	N439G	AAc	GGc	1	2	All	0
S	439	N439N	aaC	aaT	2	2	AY.100	0.000092
S	439	N439K	aaC	aaG	1	2	AY.102	0.000027
S	439	N439K	aaC	aaA	1	2	AY.102	0.000027
S	439	N439N	aaC	aaT	2	2	AY.118	0.000125
S	439	N439N	aaC	aaT	2	2	AY.120	0.000074
S	439	N439N	aaC	aaT	2	2	AY.121	0.000271
S	439	N439K	aaC	aaA	2	2	AY.23	0.000139
S	439	N439N	aaC	aaT	2	2	AY.39	0.000049
S	439	N439N	aaC	aaT	2	2	AY.48	0.00093
S	439	N439N	aaC	aaT	2	2	AY.6	0.000082
S	439	N439N	aaC	aaT	2	2	AY.68	0.000547
S	439	N439N	aaC	aaT	2	2	AY.7	0.000392
S	439	N439N	aaC	aaT	2	2	AY.70	0.000417
S	439	N439S	aAc	aGc	2	2	B.1.1	0.000036
S	439	N439I	aAc	aTc	1	2	B.1.1	0.000018
S	439	N439I	aAC	aTT	1	2	B.1.1	0.000018
S	439	N439K	aaC	aaA	2	2	B.1.1.153	0.002191
S	439	N439K	aaC	aaA	2	2	B.1.1.39	0.001019
S	439	N439N	aaC	aaT	2	2	B.1.1.523	0.003125
S	439	N439K	aaC	aaA	2	2	B.1.1.70	0.000682
S	439	N439N	aaC	aaT	2	2	B.1.160	0.000062
S	439	N439N	aaC	aaT	2	2	B.1.177	0.000026
S	439	N439K	aaC	aaA	2	2	B.1.177.44	0.001038
S	439	N439K	aaC	aaA	2	2	B.1.177.81	0.000379
S	439	N439I	aAc	aTc	1	2	B.1.221	0.000071
S	439	N439I	aAC	aTA	1	2	B.1.221	0.000071
S	439	N439I	aAC	aTT	1	2	B.1.351	0.00003
S	439	N439S	aAC	aGT	1	2	B.1.351	0.00003
S	439	N439I	aAc	aTc	1	2	B.1.351	0.00003
S	439	N439S	aAc	aGc	1	2	B.1.351	0.00003
S	439	N439K	aaC	aaA	2	2	B.1.36.17	0.000988
S	439	N439N	aaC	aaT	2	2	B.1.36.27	0.001527
S	439	N439K	aaC	aaA	2	2	B.1.415.1	0.015152
S	439	N439K	aaC	aaA	2	2	B.1.432	0.022472
S	439	N439K	aaC	aaA	2	2	B.1.459	0.008163
S	439	N439K	aaC	aaG	2	2	B.1.526	0.000047
S	439	N439K	aaC	aaA	2	2	B.1.533	0.019231
S	439	N439K	aaC	aaA	2	2	B.1.575	0.000607
S	439	N439K	aaC	aaA	2	2	B.1.596	0.000174
S	439	N439K	aaC	aaA	2	2	B.1.617.1	0.000258
S	439	N439N	aaC	aaT	2	2	B.1.621	0.000177
S	439	N439K	aaC	aaG	2	2	B.6	0.00182
S	439	N439N	aaC	aaT	2	2	C.36	0.001821
S	439	N439N	aaC	aaT	2	2	Q.3	0.00029
S	439	N439K	aaC	aaG	2	2	Q.8	0.00033
S	439	N439N	aaC	aaT	1	1		0.055556
S	439	N439del	AAC	---	1	1	A	0.000387
S	439	N439K	aaC	aaA	1	1	A.19	0.009434
S	439	N439K	aaC	aaA	1	1	A.2	0.000662
S	439	N439Y	Aac	Tac	1	1	A.2.4	0.003367
S	439	N439K	aaC	aaA	1	1	A.2.5	0.000499
S	439	N439N	aaC	aaT	1	1	AD.2	0.000219
S	439	N439F	AAc	TTc	1	1	All	0
S	439	N439X	AaC	TaA	1	1	All	0
S	439	N439R	aAC	aGG	1	1	All	0
S	439	N439H	Aac	Cac	1	1	AY.102	0.000027
S	439	N439K	aaC	aaA	1	1	AY.103	0.000006
S	439	N439Y	Aac	Tac	1	1	AY.103	0.000006
S	439	N439N	aaC	aaT	1	1	AY.108	0.001103
S	439	N439S	aAc	aGc	1	1	AY.119	0.000035
S	439	N439N	aaC	aaT	1	1	AY.16	0.00038
S	439	N439K	aaC	aaA	1	1	AY.20	0.000039
S	439	N439N	aaC	aaT	1	1	AY.23	0.00007
S	439	N439K	aaC	aaA	1	1	AY.24	0.000431
S	439	N439D	Aac	Gac	1	1	AY.25	0.000006
S	439	N439D	Aac	Gac	1	1	AY.29	0.000016
S	439	N439I	aAc	aTc	1	1	AY.3	0.00001
S	439	N439K	aaC	aaA	1	1	AY.34	0.000097
S	439	N439N	aaC	aaT	1	1	AY.34.1	0.00051
S	439	N439N	aaC	aaT	1	1	AY.35	0.000233
S	439	N439K	aaC	aaG	1	1	AY.39	0.000025
S	439	N439I	aAc	aTc	1	1	AY.39	0.000025
S	439	N439Y	Aac	Tac	1	1	AY.4	0.000002
S	439	N439del	AAC	---	1	1	AY.4	0.000002
S	439	N439N	aaC	aaT	1	1	AY.42	0.00004
S	439	N439Y	Aac	Tac	1	1	AY.43	0.000004
S	439	N439I	aAc	aTc	1	1	AY.43	0.000004
S	439	N439S	aAc	aGc	1	1	AY.43	0.000004
S	439	N439S	aAc	aGc	1	1	AY.44	0.000006
S	439	N439K	aaC	aaG	1	1	AY.44	0.000006
S	439	N439N	aaC	aaT	1	1	AY.46.4	0.000165
S	439	N439S	aAc	aGc	1	1	AY.5	0.000021
S	439	N439del	AAC	---	1	1	AY.5	0.000021
S	439	N439N	aaC	aaT	1	1	AY.57	0.000656
S	439	N439N	aaC	aaT	1	1	AY.61	0.000105
S	439	N439N	aaC	aaT	1	1	AY.66	0.00107
S	439	N439N	aaC	aaT	1	1	AY.71	0.000475
S	439	N439N	aaC	aaT	1	1	AY.78	0.001541
S	439	N439N	aaC	aaT	1	1	AY.85	0.000427
S	439	N439N	aaC	aaT	1	1	AY.9.2	0.000037
S	439	N439N	aaC	aaT	1	1	AY.92	0.000287
S	439	N439N	aaC	aaT	1	1	AY.99.1	0.001553
S	439	N439N	aaC	aaT	1	1	AZ.2	0.000821
S	439	N439N	aaC	aaT	1	1	B	0.000128
S	439	N439del	AAC	---	1	1	B	0.000128
S	439	N439Y	Aac	Tac	1	1	B.1	0.000009
S	439	N439F	AAc	TTc	1	1	B.1	0.000009
S	439	N439T	aAc	aCc	1	1	B.1.1	0.000018
S	439	N439N	aaC	aaT	1	1	B.1.1.176	0.000439
S	439	N439N	aaC	aaT	1	1	B.1.1.192	0.002309
S	439	N439K	aaC	aaG	1	1	B.1.1.198	0.001468
S	439	N439K	aaC	aaG	1	1	B.1.1.203	0.016949
S	439	N439N	aaC	aaT	1	1	B.1.1.214	0.000055
S	439	N439K	aaC	aaA	1	1	B.1.1.269	0.001353
S	439	N439N	aaC	aaT	1	1	B.1.1.306	0.000438
S	439	N439N	aaC	aaT	1	1	B.1.1.315	0.008475
S	439	N439N	aaC	aaT	1	1	B.1.1.33	0.000421
S	439	N439K	aaC	aaG	1	1	B.1.1.33	0.000421
S	439	N439N	aaC	aaT	1	1	B.1.1.378	0.007299
S	439	N439K	aaC	aaA	1	1	B.1.1.379	0.03125
S	439	N439I	aAc	aTc	1	1	B.1.1.409	0.002833
S	439	N439N	aaC	aaT	1	1	B.1.1.41	0.006329
S	439	N439N	aaC	aaT	1	1	B.1.1.446	0.076923
S	439	N439K	aaC	aaA	1	1	B.1.1.50	0.000679
S	439	N439K	aaC	aaA	1	1	B.1.1.51	0.001718
S	439	N439del	AAC	---	1	1	B.1.1.519	0.00004
S	439	N439N	aaC	aaT	1	1	B.1.1.519	0.00004
S	439	N439K	aaC	aaA	1	1	B.1.1.523	0.001563
S	439	N439K	aaC	aaA	1	1	B.1.1.528	0.004808
S	439	N439D	AaC	GaT	1	1	B.1.1.7	0.000001
S	439	N439K	aaC	aaA	1	1	B.1.143	0.021277
S	439	N439K	aaC	aaA	1	1	B.1.157	0.002985
S	439	N439D	Aac	Gac	1	1	B.1.160	0.000031
S	439	N439K	aaC	aaA	1	1	B.1.160.8	0.001289
S	439	N439T	aAc	aCc	1	1	B.1.177	0.000013
S	439	N439del1	aaC	aa-	1	1	B.1.177	0.000013
S	439	N439del2	aAC	a--	1	1	B.1.177	0.000013
S	439	N439del	AAC	---	1	1	B.1.177.18	0.00116
S	439	N439N	aaC	aaT	1	1	B.1.177.21	0.000076
S	439	N439K	aaC	aaA	1	1	B.1.177.31	0.011494
S	439	N439N	aaC	aaT	1	1	B.1.177.35	0.000691
S	439	N439del	AAC	---	1	1	B.1.177.4	0.000211
S	439	N439N	aaC	aaT	1	1	B.1.177.44	0.000519
S	439	N439N	aaC	aaT	1	1	B.1.177.5	0.001242
S	439	N439Y	Aac	Tac	1	1	B.1.177.51	0.004566
S	439	N439K	aaC	aaG	1	1	B.1.177.76	0.002494
S	439	N439N	aaC	aaT	1	1	B.1.177.82	0.000477
S	439	N439del	AAC	---	1	1	B.1.2	0.000009
S	439	N439K	aaC	aaA	1	1	B.1.2	0.000009
S	439	N439del2	aAC	a--	1	1	B.1.2	0.000009
S	439	N439del1	aaC	aa-	1	1	B.1.2	0.000009
S	439	N439N	aaC	aaT	1	1	B.1.214.2	0.0006
S	439	N439K	aaC	aaA	1	1	B.1.214.2	0.0006
S	439	N439K	aaC	aaA	1	1	B.1.237	0.004975
S	439	N439K	aaC	aaA	1	1	B.1.247	0.014925
S	439	N439D	AaC	GaT	1	1	B.1.258	0.000067
S	439	N439del	AAC	---	1	1	B.1.258	0.000067
S	439	N439X	AaC	TaA	1	1	B.1.258	0.000067
S	439	N439del	AAC	---	1	1	B.1.258.17	0.000104
S	439	N439K	aaC	aaA	1	1	B.1.293	0.0125
S	439	N439del1	aaC	aa-	1	1	B.1.336	0.002439
S	439	N439N	aaC	aaT	1	1	B.1.336	0.002439
S	439	N439M	aAC	aTG	1	1	B.1.351	0.00003
S	439	N439R	aAC	aGG	1	1	B.1.351	0.00003
S	439	N439K	aaC	aaG	1	1	B.1.351	0.00003
S	439	N439del	AAC	---	1	1	B.1.351.2	0.000303
S	439	N439N	aaC	aaT	1	1	B.1.36.1	0.00114
S	439	N439K	aaC	aaA	1	1	B.1.362	0.001541
S	439	N439K	aaC	aaA	1	1	B.1.367	0.000792
S	439	N439K	aaC	aaA	1	1	B.1.380	0.006623
S	439	N439K	aaC	aaA	1	1	B.1.395	0.007042
S	439	N439K	aaC	aaA	1	1	B.1.406	0.006061
S	439	N439K	aaC	aaA	1	1	B.1.427	0.00005
S	439	N439K	aaC	aaG	1	1	B.1.429	0.000024
S	439	N439N	aaC	aaT	1	1	B.1.429	0.000024
S	439	N439S	aAc	aGc	1	1	B.1.429	0.000024
S	439	N439T	aAC	aCA	1	1	B.1.466.2	0.000391
S	439	N439K	aaC	aaA	1	1	B.1.473	0.019231
S	439	N439del	AAC	---	1	1	B.1.525	0.000113
S	439	N439N	aaC	aaT	1	1	B.1.526	0.000024
S	439	N439N	aaC	aaT	1	1	B.1.564	0.000426
S	439	N439K	aaC	aaA	1	1	B.1.576	0.000907
S	439	N439I	aAC	aTT	1	1	B.1.577	0.000687
S	439	N439N	aaC	aaT	1	1	B.1.596	0.000087
S	439	N439K	aaC	aaA	1	1	B.1.599	0.00365
S	439	N439N	aaC	aaT	1	1	B.1.617.1	0.000129
S	439	N439del1	Aac	-ac	1	1	B.1.617.2	0.000004
S	439	N439del	AAC	---	1	1	B.1.617.2	0.000004
S	439	N439H	Aac	Cac	1	1	B.1.617.2	0.000004
S	439	N439del	AAC	---	1	1	B.1.620	0.000946
S	439	N439K	aaC	aaG	1	1	B.1.623	0.000536
S	439	N439K	aaC	aaA	1	1	B.1.627	0.00202
S	439	N439N	aaC	aaT	1	1	B.1.628	0.000352
S	439	N439K	aaC	aaA	1	1	B.1.631	0.003367
S	439	N439K	aaC	aaA	1	1	B.1.638	0.052632
S	439	N439del	AAC	---	1	1	B.34	0.013699
S	439	N439Y	Aac	Tac	1	1	B.6	0.00091
S	439	N439N	aaC	aaT	1	1	C.35	0.000774
S	439	N439K	aaC	aaG	1	1	L.3	0.003546
S	439	N439K	aaC	aaG	1	1	P.1.12	0.000484
S	439	N439D	Aac	Gac	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.