CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 439

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S439N439KnonsynaaCaaA36642363460.99192222877-22879
S439N439KnonsynaaCaaG366422960.0080781622877-22879
S439N439NsynaaCaaT12381238122877-22879
S439N439InonsynaAcaTc26140.53846222877-22879
S439N439InonsynaACaTT2670.26923122877-22879
S439N439InonsynaACaTA2650.19230822877-22879
S439N439deldelAAC---2121122877-22879
S439N439SnonsynaAcaGc14120.85714322877-22879
S439N439SnonsynaACaGT1420.14285722877-22879
S439N439TnonsynaAcaCc1170.63636422877-22879
S439N439TnonsynaACaCA1120.18181822877-22879
S439N439TnonsynaACaCT1120.18181822877-22879
S439N439DnonsynAacGac1070.722877-22879
S439N439DnonsynAaCGaT1030.322877-22879
S439N439YnonsynAacTac77122877-22879
S439N439del1delaaCaa-430.7522877-22879
S439N439VnonsynAAcGTc420.522877-22879
S439N439VnonsynAACGTG420.522877-22879
S439N439del1delAac-ac410.2522877-22879
S439N439MnonsynaACaTG33122877-22879
S439N439del2delaACa--22122877-22879
S439N439HnonsynAacCac22122877-22879
S439N439EnonsynAaCGaG22122877-22879
S439N439GnonsynAAcGGc210.522877-22879
S439N439GnonsynAACGGT210.522877-22879
S439N439FnonsynAAcTTc11122877-22879
S439N439XnonsynAaCTaA11122877-22879
S439N439RnonsynaACaGG11122877-22879

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S439N439KaaCaaA3634636642All0.006952
S439N439KaaCaaG29636642All0.000057
S439N439KaaCaaA1444114441B.1.2580.961004
S439N439KaaCaaA92419241B.1.258.170.960803
S439N439KaaCaaA24662466B.1.258.110.977408
S439N439KaaCaaA23582358B.1.466.20.922535
S439N439NaaCaaT12381238All0.000237
S439N439KaaCaaA10091009B.1.258.140.989216
S439N439KaaCaaA608608B.1.258.160.99509
S439N439KaaCaaA578578B.1.258.30.968174
S439N439KaaCaaA573573B.1.2220.969543
S439N439KaaCaaA515515B.1.258.70.984704
S439N439KaaCaaA483483AU.10.611392
S439N439KaaCaaA406406AU.20.983051
S439N439KaaCaaA392395B.10.003591
S439N439KaaCaaG3395B.10.000027
S439N439KaaCaaA383383AU.30.808017
S439N439KaaCaaA375375B.1.258.221
S439N439KaaCaaA273273B.1.4800.679104
S439N439KaaCaaA269269B.1.258.40.927586
S439N439KaaCaaA214214B.1.258.20.963964
S439N439NaaCaaT205205B.1.1.70.000184
S439N439KaaCaaA200200B.1.258.91
S439N439KaaCaaG178178AV.10.89899
S439N439KaaCaaA141141B.1.258.191
S439N439KaaCaaA138138B.1.466.10.992806
S439N439NaaCaaT130130P.20.024263
S439N439KaaCaaA129129B.1.258.211
S439N439KaaCaaA124124B.1.258.120.976378
S439N439NaaCaaT119119AY.40.000185
S439N439NaaCaaT113113AY.1030.000702
S439N439KaaCaaA113113B.1.258.50.991228
S439N439KaaCaaA9393B.1.258.241
S439N439KaaCaaA7992B.1.1.70.000071
S439N439KaaCaaG1392B.1.1.70.000012
S439N439KaaCaaA8888B.1.258.101
S439N439KaaCaaG5078B.1.10.000907
S439N439KaaCaaA2878B.1.10.000508
S439N439NaaCaaT6767AY.260.001897
S439N439KaaCaaA6363B.1.258.201
S439N439NaaCaaT6262AY.200.00241
S439N439KaaCaaA6161B.1.1.5260.216312
S439N439KaaCaaA5353B.1.258.151
S439N439KaaCaaA4949B.1.258.60.960784
S439N439NaaCaaT4444AY.98.10.002131
S439N439NaaCaaT3535B.1.1.2220.00714
S439N439NaaCaaT3434B.1.617.20.000128
S439N439KaaCaaA3333B.1.1.5240.6875
S439N439NaaCaaT3131AY.1160.00889
S439N439KaaCaaA2929B.1.1600.000904
S439N439KaaCaaA2929B.1.1770.000382
S439N439KaaCaaA2929B.1.258.230.690476
S439N439KaaCaaA2828B.1.6090.013423
S439N439NaaCaaT2727AY.440.000164
S439N439IaAcaTc1426All0.000003
S439N439IaACaTT726All0.000001
S439N439IaACaTA526All0.000001
S439N439NaaCaaT2626B.10.000238
S439N439NaaCaaT2525B.1.36.220.030193
S439N439NaaCaaT2424B.1.5250.002716
S439N439KaaCaaA2424G.11
S439N439delAAC---2121All0.000004
S439N439KaaCaaG1520AY.40.000023
S439N439KaaCaaA520AY.40.000008
S439N439KaaCaaA1919B.1.4620.137681
S439N439NaaCaaT1818AY.450.00219
S439N439NaaCaaT1717AY.30.000169
S439N439NaaCaaT1616AY.46.60.001155
S439N439SaAcaGc1214All0.000002
S439N439SaACaGT214All0
S439N439NaaCaaT1414AY.250.000084
S439N439NaaCaaT1414AY.430.000062
S439N439NaaCaaT1414AY.99.20.00129
S439N439IaAcaTc513B.10.000046
S439N439IaACaTT413B.10.000037
S439N439IaACaTA413B.10.000037
S439N439KaaCaaA1212B.1.4740.022814
S439N439KaaCaaA1212B.1.6280.004228
S439N439TaAcaCc711All0.000001
S439N439TaACaCT211All0
S439N439TaACaCA211All0
S439N439DAacGac710All0.000001
S439N439DAaCGaT310All0.000001
S439N439NaaCaaT1010AY.50.000206
S439N439KaaCaaA1010B.1.258.181
S439N439NaaCaaT1010B.1.351.20.003026
S439N439NaaCaaT1010P.10.000158
S439N439NaaCaaT99AY.750.000504
S439N439KaaCaaA99B.1.360.001313
S439N439KaaCaaA58B0.000639
S439N439KaaCaaG38B0.000383
S439N439TaAcaCc58B.10.000046
S439N439TaACaCT28B.10.000018
S439N439TaACaCA18B.10.000009
S439N439NaaCaaT88B.1.10.000145
S439N439NaaCaaT88B.1.1.2410.016563
S439N439KaaCaaG88B.1.1.280.00249
S439N439NaaCaaT88B.1.20.00007
S439N439KaaCaaA77A0.002709
S439N439YAacTac77All0.000001
S439N439KaaCaaA77B.1.177.730.003964
S439N439KaaCaaA77B.1.177.860.001284
S439N439NaaCaaT77B.1.5170.002989
S439N439KaaCaaA77B.1.6320.04698
S439N439KaaCaaA77B.4.10.132075
S439N439KaaCaaG46B.1.1.5190.000159
S439N439KaaCaaA26B.1.1.5190.000079
S439N439KaaCaaA66B.1.4690.021661
S439N439KaaCaaA55B.1.1.2160.004452
S439N439KaaCaaA55B.1.2210.000355
S439N439NaaCaaT55B.1.5430.05
S439N439KaaCaaA45C.370.000464
S439N439KaaCaaG15C.370.000116
S439N439DAacGac340.166667
S439N439VAAcGTc240.111111
S439N439VAACGTG240.111111
S439N439DAaCGaT140.055556
S439N439del1aaCaa-34All0.000001
S439N439VAAcGTc24All0
S439N439VAACGTG24All0
S439N439del1Aac-ac14All0
S439N439NaaCaaT44AY.290.000063
S439N439NaaCaaT44AY.4.20.000087
S439N439NaaCaaT44B.1.1.280.001245
S439N439KaaCaaA44B.1.1.3890.024242
S439N439delAAC---44B.1.1.70.000004
S439N439NaaCaaT44B.1.3510.000119
S439N439KaaCaaA44B.1.36.290.002069
S439N439KaaCaaA44B.1.3750.003279
S439N439KaaCaaA44B.1.5900.018182
S439N439KaaCaaA44B.1.6000.023392
S439N439KaaCaaA34B.1.617.20.000011
S439N439KaaCaaG14B.1.617.20.000004
S439N439KaaCaaA44P.70.017467
S439N439MaACaTG33All0.000001
S439N439NaaCaaT33AY.1020.00008
S439N439NaaCaaT33AY.116.10.000934
S439N439NaaCaaT33AY.1190.000106
S439N439NaaCaaT33AY.3.10.000256
S439N439NaaCaaT33AY.300.001187
S439N439KaaCaaA33AY.430.000013
S439N439NaaCaaT33AY.470.000093
S439N439NaaCaaT33B.1.1.630.001157
S439N439SaAcaGc33B.1.1.70.000003
S439N439KaaCaaA33B.1.177.60.00293
S439N439KaaCaaA33B.1.4110.011111
S439N439NaaCaaT33B.1.4270.000151
S439N439KaaCaaA33B.1.4600.053571
S439N439NaaCaaT33B.1.5990.010949
S439N439NaaCaaT33C.370.000348
S439N439NaaCaaT33P.1.140.000143
S439N439EAaCGaG220.111111
S439N439MaACaTG220.111111
S439N439delAAC---220.111111
S439N439IaAcaTc220.111111
S439N439KaaCaaG220.111111
S439N439GAACGGT120.055556
S439N439GAAcGGc120.055556
S439N439SaAcaGc120.055556
S439N439SaACaGT120.055556
S439N439HAacCac22All0
S439N439EAaCGaG22All0
S439N439del2aACa--22All0
S439N439GAACGGT12All0
S439N439GAAcGGc12All0
S439N439NaaCaaT22AY.1000.000092
S439N439KaaCaaG12AY.1020.000027
S439N439KaaCaaA12AY.1020.000027
S439N439NaaCaaT22AY.1180.000125
S439N439NaaCaaT22AY.1200.000074
S439N439NaaCaaT22AY.1210.000271
S439N439KaaCaaA22AY.230.000139
S439N439NaaCaaT22AY.390.000049
S439N439NaaCaaT22AY.480.00093
S439N439NaaCaaT22AY.60.000082
S439N439NaaCaaT22AY.680.000547
S439N439NaaCaaT22AY.70.000392
S439N439NaaCaaT22AY.700.000417
S439N439SaAcaGc22B.1.10.000036
S439N439IaAcaTc12B.1.10.000018
S439N439IaACaTT12B.1.10.000018
S439N439KaaCaaA22B.1.1.1530.002191
S439N439KaaCaaA22B.1.1.390.001019
S439N439NaaCaaT22B.1.1.5230.003125
S439N439KaaCaaA22B.1.1.700.000682
S439N439NaaCaaT22B.1.1600.000062
S439N439NaaCaaT22B.1.1770.000026
S439N439KaaCaaA22B.1.177.440.001038
S439N439KaaCaaA22B.1.177.810.000379
S439N439IaAcaTc12B.1.2210.000071
S439N439IaACaTA12B.1.2210.000071
S439N439IaACaTT12B.1.3510.00003
S439N439SaACaGT12B.1.3510.00003
S439N439IaAcaTc12B.1.3510.00003
S439N439SaAcaGc12B.1.3510.00003
S439N439KaaCaaA22B.1.36.170.000988
S439N439NaaCaaT22B.1.36.270.001527
S439N439KaaCaaA22B.1.415.10.015152
S439N439KaaCaaA22B.1.4320.022472
S439N439KaaCaaA22B.1.4590.008163
S439N439KaaCaaG22B.1.5260.000047
S439N439KaaCaaA22B.1.5330.019231
S439N439KaaCaaA22B.1.5750.000607
S439N439KaaCaaA22B.1.5960.000174
S439N439KaaCaaA22B.1.617.10.000258
S439N439NaaCaaT22B.1.6210.000177
S439N439KaaCaaG22B.60.00182
S439N439NaaCaaT22C.360.001821
S439N439NaaCaaT22Q.30.00029
S439N439KaaCaaG22Q.80.00033
S439N439NaaCaaT110.055556
S439N439delAAC---11A0.000387
S439N439KaaCaaA11A.190.009434
S439N439KaaCaaA11A.20.000662
S439N439YAacTac11A.2.40.003367
S439N439KaaCaaA11A.2.50.000499
S439N439NaaCaaT11AD.20.000219
S439N439FAAcTTc11All0
S439N439XAaCTaA11All0
S439N439RaACaGG11All0
S439N439HAacCac11AY.1020.000027
S439N439KaaCaaA11AY.1030.000006
S439N439YAacTac11AY.1030.000006
S439N439NaaCaaT11AY.1080.001103
S439N439SaAcaGc11AY.1190.000035
S439N439NaaCaaT11AY.160.00038
S439N439KaaCaaA11AY.200.000039
S439N439NaaCaaT11AY.230.00007
S439N439KaaCaaA11AY.240.000431
S439N439DAacGac11AY.250.000006
S439N439DAacGac11AY.290.000016
S439N439IaAcaTc11AY.30.00001
S439N439KaaCaaA11AY.340.000097
S439N439NaaCaaT11AY.34.10.00051
S439N439NaaCaaT11AY.350.000233
S439N439KaaCaaG11AY.390.000025
S439N439IaAcaTc11AY.390.000025
S439N439YAacTac11AY.40.000002
S439N439delAAC---11AY.40.000002
S439N439NaaCaaT11AY.420.00004
S439N439YAacTac11AY.430.000004
S439N439IaAcaTc11AY.430.000004
S439N439SaAcaGc11AY.430.000004
S439N439SaAcaGc11AY.440.000006
S439N439KaaCaaG11AY.440.000006
S439N439NaaCaaT11AY.46.40.000165
S439N439SaAcaGc11AY.50.000021
S439N439delAAC---11AY.50.000021
S439N439NaaCaaT11AY.570.000656
S439N439NaaCaaT11AY.610.000105
S439N439NaaCaaT11AY.660.00107
S439N439NaaCaaT11AY.710.000475
S439N439NaaCaaT11AY.780.001541
S439N439NaaCaaT11AY.850.000427
S439N439NaaCaaT11AY.9.20.000037
S439N439NaaCaaT11AY.920.000287
S439N439NaaCaaT11AY.99.10.001553
S439N439NaaCaaT11AZ.20.000821
S439N439NaaCaaT11B0.000128
S439N439delAAC---11B0.000128
S439N439YAacTac11B.10.000009
S439N439FAAcTTc11B.10.000009
S439N439TaAcaCc11B.1.10.000018
S439N439NaaCaaT11B.1.1.1760.000439
S439N439NaaCaaT11B.1.1.1920.002309
S439N439KaaCaaG11B.1.1.1980.001468
S439N439KaaCaaG11B.1.1.2030.016949
S439N439NaaCaaT11B.1.1.2140.000055
S439N439KaaCaaA11B.1.1.2690.001353
S439N439NaaCaaT11B.1.1.3060.000438
S439N439NaaCaaT11B.1.1.3150.008475
S439N439NaaCaaT11B.1.1.330.000421
S439N439KaaCaaG11B.1.1.330.000421
S439N439NaaCaaT11B.1.1.3780.007299
S439N439KaaCaaA11B.1.1.3790.03125
S439N439IaAcaTc11B.1.1.4090.002833
S439N439NaaCaaT11B.1.1.410.006329
S439N439NaaCaaT11B.1.1.4460.076923
S439N439KaaCaaA11B.1.1.500.000679
S439N439KaaCaaA11B.1.1.510.001718
S439N439delAAC---11B.1.1.5190.00004
S439N439NaaCaaT11B.1.1.5190.00004
S439N439KaaCaaA11B.1.1.5230.001563
S439N439KaaCaaA11B.1.1.5280.004808
S439N439DAaCGaT11B.1.1.70.000001
S439N439KaaCaaA11B.1.1430.021277
S439N439KaaCaaA11B.1.1570.002985
S439N439DAacGac11B.1.1600.000031
S439N439KaaCaaA11B.1.160.80.001289
S439N439TaAcaCc11B.1.1770.000013
S439N439del1aaCaa-11B.1.1770.000013
S439N439del2aACa--11B.1.1770.000013
S439N439delAAC---11B.1.177.180.00116
S439N439NaaCaaT11B.1.177.210.000076
S439N439KaaCaaA11B.1.177.310.011494
S439N439NaaCaaT11B.1.177.350.000691
S439N439delAAC---11B.1.177.40.000211
S439N439NaaCaaT11B.1.177.440.000519
S439N439NaaCaaT11B.1.177.50.001242
S439N439YAacTac11B.1.177.510.004566
S439N439KaaCaaG11B.1.177.760.002494
S439N439NaaCaaT11B.1.177.820.000477
S439N439delAAC---11B.1.20.000009
S439N439KaaCaaA11B.1.20.000009
S439N439del2aACa--11B.1.20.000009
S439N439del1aaCaa-11B.1.20.000009
S439N439NaaCaaT11B.1.214.20.0006
S439N439KaaCaaA11B.1.214.20.0006
S439N439KaaCaaA11B.1.2370.004975
S439N439KaaCaaA11B.1.2470.014925
S439N439DAaCGaT11B.1.2580.000067
S439N439delAAC---11B.1.2580.000067
S439N439XAaCTaA11B.1.2580.000067
S439N439delAAC---11B.1.258.170.000104
S439N439KaaCaaA11B.1.2930.0125
S439N439del1aaCaa-11B.1.3360.002439
S439N439NaaCaaT11B.1.3360.002439
S439N439MaACaTG11B.1.3510.00003
S439N439RaACaGG11B.1.3510.00003
S439N439KaaCaaG11B.1.3510.00003
S439N439delAAC---11B.1.351.20.000303
S439N439NaaCaaT11B.1.36.10.00114
S439N439KaaCaaA11B.1.3620.001541
S439N439KaaCaaA11B.1.3670.000792
S439N439KaaCaaA11B.1.3800.006623
S439N439KaaCaaA11B.1.3950.007042
S439N439KaaCaaA11B.1.4060.006061
S439N439KaaCaaA11B.1.4270.00005
S439N439KaaCaaG11B.1.4290.000024
S439N439NaaCaaT11B.1.4290.000024
S439N439SaAcaGc11B.1.4290.000024
S439N439TaACaCA11B.1.466.20.000391
S439N439KaaCaaA11B.1.4730.019231
S439N439delAAC---11B.1.5250.000113
S439N439NaaCaaT11B.1.5260.000024
S439N439NaaCaaT11B.1.5640.000426
S439N439KaaCaaA11B.1.5760.000907
S439N439IaACaTT11B.1.5770.000687
S439N439NaaCaaT11B.1.5960.000087
S439N439KaaCaaA11B.1.5990.00365
S439N439NaaCaaT11B.1.617.10.000129
S439N439del1Aac-ac11B.1.617.20.000004
S439N439delAAC---11B.1.617.20.000004
S439N439HAacCac11B.1.617.20.000004
S439N439delAAC---11B.1.6200.000946
S439N439KaaCaaG11B.1.6230.000536
S439N439KaaCaaA11B.1.6270.00202
S439N439NaaCaaT11B.1.6280.000352
S439N439KaaCaaA11B.1.6310.003367
S439N439KaaCaaA11B.1.6380.052632
S439N439delAAC---11B.340.013699
S439N439YAacTac11B.60.00091
S439N439NaaCaaT11C.350.000774
S439N439KaaCaaG11L.30.003546
S439N439KaaCaaG11P.1.120.000484
S439N439DAacGac11R.10.00009