CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 439 | N439K | nonsyn | aaC | aaA | 36642 | 36346 | 0.991922 | 22877-22879 | |
S | 439 | N439K | nonsyn | aaC | aaG | 36642 | 296 | 0.00807816 | 22877-22879 | |
S | 439 | N439N | syn | aaC | aaT | 1238 | 1238 | 1 | 22877-22879 | |
S | 439 | N439I | nonsyn | aAc | aTc | 26 | 14 | 0.538462 | 22877-22879 | |
S | 439 | N439I | nonsyn | aAC | aTT | 26 | 7 | 0.269231 | 22877-22879 | |
S | 439 | N439I | nonsyn | aAC | aTA | 26 | 5 | 0.192308 | 22877-22879 | |
S | 439 | N439del | del | AAC | --- | 21 | 21 | 1 | 22877-22879 | |
S | 439 | N439S | nonsyn | aAc | aGc | 14 | 12 | 0.857143 | 22877-22879 | |
S | 439 | N439S | nonsyn | aAC | aGT | 14 | 2 | 0.142857 | 22877-22879 | |
S | 439 | N439T | nonsyn | aAc | aCc | 11 | 7 | 0.636364 | 22877-22879 | |
S | 439 | N439T | nonsyn | aAC | aCA | 11 | 2 | 0.181818 | 22877-22879 | |
S | 439 | N439T | nonsyn | aAC | aCT | 11 | 2 | 0.181818 | 22877-22879 | |
S | 439 | N439D | nonsyn | Aac | Gac | 10 | 7 | 0.7 | 22877-22879 | |
S | 439 | N439D | nonsyn | AaC | GaT | 10 | 3 | 0.3 | 22877-22879 | |
S | 439 | N439Y | nonsyn | Aac | Tac | 7 | 7 | 1 | 22877-22879 | |
S | 439 | N439del1 | del | aaC | aa- | 4 | 3 | 0.75 | 22877-22879 | |
S | 439 | N439V | nonsyn | AAc | GTc | 4 | 2 | 0.5 | 22877-22879 | |
S | 439 | N439V | nonsyn | AAC | GTG | 4 | 2 | 0.5 | 22877-22879 | |
S | 439 | N439del1 | del | Aac | -ac | 4 | 1 | 0.25 | 22877-22879 | |
S | 439 | N439M | nonsyn | aAC | aTG | 3 | 3 | 1 | 22877-22879 | |
S | 439 | N439del2 | del | aAC | a-- | 2 | 2 | 1 | 22877-22879 | |
S | 439 | N439H | nonsyn | Aac | Cac | 2 | 2 | 1 | 22877-22879 | |
S | 439 | N439E | nonsyn | AaC | GaG | 2 | 2 | 1 | 22877-22879 | |
S | 439 | N439G | nonsyn | AAc | GGc | 2 | 1 | 0.5 | 22877-22879 | |
S | 439 | N439G | nonsyn | AAC | GGT | 2 | 1 | 0.5 | 22877-22879 | |
S | 439 | N439F | nonsyn | AAc | TTc | 1 | 1 | 1 | 22877-22879 | |
S | 439 | N439X | nonsyn | AaC | TaA | 1 | 1 | 1 | 22877-22879 | |
S | 439 | N439R | nonsyn | aAC | aGG | 1 | 1 | 1 | 22877-22879 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 439 | N439K | aaC | aaA | 36346 | 36642 | All | 0.006952 |
S | 439 | N439K | aaC | aaG | 296 | 36642 | All | 0.000057 |
S | 439 | N439K | aaC | aaA | 14441 | 14441 | B.1.258 | 0.961004 |
S | 439 | N439K | aaC | aaA | 9241 | 9241 | B.1.258.17 | 0.960803 |
S | 439 | N439K | aaC | aaA | 2466 | 2466 | B.1.258.11 | 0.977408 |
S | 439 | N439K | aaC | aaA | 2358 | 2358 | B.1.466.2 | 0.922535 |
S | 439 | N439N | aaC | aaT | 1238 | 1238 | All | 0.000237 |
S | 439 | N439K | aaC | aaA | 1009 | 1009 | B.1.258.14 | 0.989216 |
S | 439 | N439K | aaC | aaA | 608 | 608 | B.1.258.16 | 0.99509 |
S | 439 | N439K | aaC | aaA | 578 | 578 | B.1.258.3 | 0.968174 |
S | 439 | N439K | aaC | aaA | 573 | 573 | B.1.222 | 0.969543 |
S | 439 | N439K | aaC | aaA | 515 | 515 | B.1.258.7 | 0.984704 |
S | 439 | N439K | aaC | aaA | 483 | 483 | AU.1 | 0.611392 |
S | 439 | N439K | aaC | aaA | 406 | 406 | AU.2 | 0.983051 |
S | 439 | N439K | aaC | aaA | 392 | 395 | B.1 | 0.003591 |
S | 439 | N439K | aaC | aaG | 3 | 395 | B.1 | 0.000027 |
S | 439 | N439K | aaC | aaA | 383 | 383 | AU.3 | 0.808017 |
S | 439 | N439K | aaC | aaA | 375 | 375 | B.1.258.22 | 1 |
S | 439 | N439K | aaC | aaA | 273 | 273 | B.1.480 | 0.679104 |
S | 439 | N439K | aaC | aaA | 269 | 269 | B.1.258.4 | 0.927586 |
S | 439 | N439K | aaC | aaA | 214 | 214 | B.1.258.2 | 0.963964 |
S | 439 | N439N | aaC | aaT | 205 | 205 | B.1.1.7 | 0.000184 |
S | 439 | N439K | aaC | aaA | 200 | 200 | B.1.258.9 | 1 |
S | 439 | N439K | aaC | aaG | 178 | 178 | AV.1 | 0.89899 |
S | 439 | N439K | aaC | aaA | 141 | 141 | B.1.258.19 | 1 |
S | 439 | N439K | aaC | aaA | 138 | 138 | B.1.466.1 | 0.992806 |
S | 439 | N439N | aaC | aaT | 130 | 130 | P.2 | 0.024263 |
S | 439 | N439K | aaC | aaA | 129 | 129 | B.1.258.21 | 1 |
S | 439 | N439K | aaC | aaA | 124 | 124 | B.1.258.12 | 0.976378 |
S | 439 | N439N | aaC | aaT | 119 | 119 | AY.4 | 0.000185 |
S | 439 | N439N | aaC | aaT | 113 | 113 | AY.103 | 0.000702 |
S | 439 | N439K | aaC | aaA | 113 | 113 | B.1.258.5 | 0.991228 |
S | 439 | N439K | aaC | aaA | 93 | 93 | B.1.258.24 | 1 |
S | 439 | N439K | aaC | aaA | 79 | 92 | B.1.1.7 | 0.000071 |
S | 439 | N439K | aaC | aaG | 13 | 92 | B.1.1.7 | 0.000012 |
S | 439 | N439K | aaC | aaA | 88 | 88 | B.1.258.10 | 1 |
S | 439 | N439K | aaC | aaG | 50 | 78 | B.1.1 | 0.000907 |
S | 439 | N439K | aaC | aaA | 28 | 78 | B.1.1 | 0.000508 |
S | 439 | N439N | aaC | aaT | 67 | 67 | AY.26 | 0.001897 |
S | 439 | N439K | aaC | aaA | 63 | 63 | B.1.258.20 | 1 |
S | 439 | N439N | aaC | aaT | 62 | 62 | AY.20 | 0.00241 |
S | 439 | N439K | aaC | aaA | 61 | 61 | B.1.1.526 | 0.216312 |
S | 439 | N439K | aaC | aaA | 53 | 53 | B.1.258.15 | 1 |
S | 439 | N439K | aaC | aaA | 49 | 49 | B.1.258.6 | 0.960784 |
S | 439 | N439N | aaC | aaT | 44 | 44 | AY.98.1 | 0.002131 |
S | 439 | N439N | aaC | aaT | 35 | 35 | B.1.1.222 | 0.00714 |
S | 439 | N439N | aaC | aaT | 34 | 34 | B.1.617.2 | 0.000128 |
S | 439 | N439K | aaC | aaA | 33 | 33 | B.1.1.524 | 0.6875 |
S | 439 | N439N | aaC | aaT | 31 | 31 | AY.116 | 0.00889 |
S | 439 | N439K | aaC | aaA | 29 | 29 | B.1.160 | 0.000904 |
S | 439 | N439K | aaC | aaA | 29 | 29 | B.1.177 | 0.000382 |
S | 439 | N439K | aaC | aaA | 29 | 29 | B.1.258.23 | 0.690476 |
S | 439 | N439K | aaC | aaA | 28 | 28 | B.1.609 | 0.013423 |
S | 439 | N439N | aaC | aaT | 27 | 27 | AY.44 | 0.000164 |
S | 439 | N439I | aAc | aTc | 14 | 26 | All | 0.000003 |
S | 439 | N439I | aAC | aTT | 7 | 26 | All | 0.000001 |
S | 439 | N439I | aAC | aTA | 5 | 26 | All | 0.000001 |
S | 439 | N439N | aaC | aaT | 26 | 26 | B.1 | 0.000238 |
S | 439 | N439N | aaC | aaT | 25 | 25 | B.1.36.22 | 0.030193 |
S | 439 | N439N | aaC | aaT | 24 | 24 | B.1.525 | 0.002716 |
S | 439 | N439K | aaC | aaA | 24 | 24 | G.1 | 1 |
S | 439 | N439del | AAC | --- | 21 | 21 | All | 0.000004 |
S | 439 | N439K | aaC | aaG | 15 | 20 | AY.4 | 0.000023 |
S | 439 | N439K | aaC | aaA | 5 | 20 | AY.4 | 0.000008 |
S | 439 | N439K | aaC | aaA | 19 | 19 | B.1.462 | 0.137681 |
S | 439 | N439N | aaC | aaT | 18 | 18 | AY.45 | 0.00219 |
S | 439 | N439N | aaC | aaT | 17 | 17 | AY.3 | 0.000169 |
S | 439 | N439N | aaC | aaT | 16 | 16 | AY.46.6 | 0.001155 |
S | 439 | N439S | aAc | aGc | 12 | 14 | All | 0.000002 |
S | 439 | N439S | aAC | aGT | 2 | 14 | All | 0 |
S | 439 | N439N | aaC | aaT | 14 | 14 | AY.25 | 0.000084 |
S | 439 | N439N | aaC | aaT | 14 | 14 | AY.43 | 0.000062 |
S | 439 | N439N | aaC | aaT | 14 | 14 | AY.99.2 | 0.00129 |
S | 439 | N439I | aAc | aTc | 5 | 13 | B.1 | 0.000046 |
S | 439 | N439I | aAC | aTT | 4 | 13 | B.1 | 0.000037 |
S | 439 | N439I | aAC | aTA | 4 | 13 | B.1 | 0.000037 |
S | 439 | N439K | aaC | aaA | 12 | 12 | B.1.474 | 0.022814 |
S | 439 | N439K | aaC | aaA | 12 | 12 | B.1.628 | 0.004228 |
S | 439 | N439T | aAc | aCc | 7 | 11 | All | 0.000001 |
S | 439 | N439T | aAC | aCT | 2 | 11 | All | 0 |
S | 439 | N439T | aAC | aCA | 2 | 11 | All | 0 |
S | 439 | N439D | Aac | Gac | 7 | 10 | All | 0.000001 |
S | 439 | N439D | AaC | GaT | 3 | 10 | All | 0.000001 |
S | 439 | N439N | aaC | aaT | 10 | 10 | AY.5 | 0.000206 |
S | 439 | N439K | aaC | aaA | 10 | 10 | B.1.258.18 | 1 |
S | 439 | N439N | aaC | aaT | 10 | 10 | B.1.351.2 | 0.003026 |
S | 439 | N439N | aaC | aaT | 10 | 10 | P.1 | 0.000158 |
S | 439 | N439N | aaC | aaT | 9 | 9 | AY.75 | 0.000504 |
S | 439 | N439K | aaC | aaA | 9 | 9 | B.1.36 | 0.001313 |
S | 439 | N439K | aaC | aaA | 5 | 8 | B | 0.000639 |
S | 439 | N439K | aaC | aaG | 3 | 8 | B | 0.000383 |
S | 439 | N439T | aAc | aCc | 5 | 8 | B.1 | 0.000046 |
S | 439 | N439T | aAC | aCT | 2 | 8 | B.1 | 0.000018 |
S | 439 | N439T | aAC | aCA | 1 | 8 | B.1 | 0.000009 |
S | 439 | N439N | aaC | aaT | 8 | 8 | B.1.1 | 0.000145 |
S | 439 | N439N | aaC | aaT | 8 | 8 | B.1.1.241 | 0.016563 |
S | 439 | N439K | aaC | aaG | 8 | 8 | B.1.1.28 | 0.00249 |
S | 439 | N439N | aaC | aaT | 8 | 8 | B.1.2 | 0.00007 |
S | 439 | N439K | aaC | aaA | 7 | 7 | A | 0.002709 |
S | 439 | N439Y | Aac | Tac | 7 | 7 | All | 0.000001 |
S | 439 | N439K | aaC | aaA | 7 | 7 | B.1.177.73 | 0.003964 |
S | 439 | N439K | aaC | aaA | 7 | 7 | B.1.177.86 | 0.001284 |
S | 439 | N439N | aaC | aaT | 7 | 7 | B.1.517 | 0.002989 |
S | 439 | N439K | aaC | aaA | 7 | 7 | B.1.632 | 0.04698 |
S | 439 | N439K | aaC | aaA | 7 | 7 | B.4.1 | 0.132075 |
S | 439 | N439K | aaC | aaG | 4 | 6 | B.1.1.519 | 0.000159 |
S | 439 | N439K | aaC | aaA | 2 | 6 | B.1.1.519 | 0.000079 |
S | 439 | N439K | aaC | aaA | 6 | 6 | B.1.469 | 0.021661 |
S | 439 | N439K | aaC | aaA | 5 | 5 | B.1.1.216 | 0.004452 |
S | 439 | N439K | aaC | aaA | 5 | 5 | B.1.221 | 0.000355 |
S | 439 | N439N | aaC | aaT | 5 | 5 | B.1.543 | 0.05 |
S | 439 | N439K | aaC | aaA | 4 | 5 | C.37 | 0.000464 |
S | 439 | N439K | aaC | aaG | 1 | 5 | C.37 | 0.000116 |
S | 439 | N439D | Aac | Gac | 3 | 4 | 0.166667 | |
S | 439 | N439V | AAc | GTc | 2 | 4 | 0.111111 | |
S | 439 | N439V | AAC | GTG | 2 | 4 | 0.111111 | |
S | 439 | N439D | AaC | GaT | 1 | 4 | 0.055556 | |
S | 439 | N439del1 | aaC | aa- | 3 | 4 | All | 0.000001 |
S | 439 | N439V | AAc | GTc | 2 | 4 | All | 0 |
S | 439 | N439V | AAC | GTG | 2 | 4 | All | 0 |
S | 439 | N439del1 | Aac | -ac | 1 | 4 | All | 0 |
S | 439 | N439N | aaC | aaT | 4 | 4 | AY.29 | 0.000063 |
S | 439 | N439N | aaC | aaT | 4 | 4 | AY.4.2 | 0.000087 |
S | 439 | N439N | aaC | aaT | 4 | 4 | B.1.1.28 | 0.001245 |
S | 439 | N439K | aaC | aaA | 4 | 4 | B.1.1.389 | 0.024242 |
S | 439 | N439del | AAC | --- | 4 | 4 | B.1.1.7 | 0.000004 |
S | 439 | N439N | aaC | aaT | 4 | 4 | B.1.351 | 0.000119 |
S | 439 | N439K | aaC | aaA | 4 | 4 | B.1.36.29 | 0.002069 |
S | 439 | N439K | aaC | aaA | 4 | 4 | B.1.375 | 0.003279 |
S | 439 | N439K | aaC | aaA | 4 | 4 | B.1.590 | 0.018182 |
S | 439 | N439K | aaC | aaA | 4 | 4 | B.1.600 | 0.023392 |
S | 439 | N439K | aaC | aaA | 3 | 4 | B.1.617.2 | 0.000011 |
S | 439 | N439K | aaC | aaG | 1 | 4 | B.1.617.2 | 0.000004 |
S | 439 | N439K | aaC | aaA | 4 | 4 | P.7 | 0.017467 |
S | 439 | N439M | aAC | aTG | 3 | 3 | All | 0.000001 |
S | 439 | N439N | aaC | aaT | 3 | 3 | AY.102 | 0.00008 |
S | 439 | N439N | aaC | aaT | 3 | 3 | AY.116.1 | 0.000934 |
S | 439 | N439N | aaC | aaT | 3 | 3 | AY.119 | 0.000106 |
S | 439 | N439N | aaC | aaT | 3 | 3 | AY.3.1 | 0.000256 |
S | 439 | N439N | aaC | aaT | 3 | 3 | AY.30 | 0.001187 |
S | 439 | N439K | aaC | aaA | 3 | 3 | AY.43 | 0.000013 |
S | 439 | N439N | aaC | aaT | 3 | 3 | AY.47 | 0.000093 |
S | 439 | N439N | aaC | aaT | 3 | 3 | B.1.1.63 | 0.001157 |
S | 439 | N439S | aAc | aGc | 3 | 3 | B.1.1.7 | 0.000003 |
S | 439 | N439K | aaC | aaA | 3 | 3 | B.1.177.6 | 0.00293 |
S | 439 | N439K | aaC | aaA | 3 | 3 | B.1.411 | 0.011111 |
S | 439 | N439N | aaC | aaT | 3 | 3 | B.1.427 | 0.000151 |
S | 439 | N439K | aaC | aaA | 3 | 3 | B.1.460 | 0.053571 |
S | 439 | N439N | aaC | aaT | 3 | 3 | B.1.599 | 0.010949 |
S | 439 | N439N | aaC | aaT | 3 | 3 | C.37 | 0.000348 |
S | 439 | N439N | aaC | aaT | 3 | 3 | P.1.14 | 0.000143 |
S | 439 | N439E | AaC | GaG | 2 | 2 | 0.111111 | |
S | 439 | N439M | aAC | aTG | 2 | 2 | 0.111111 | |
S | 439 | N439del | AAC | --- | 2 | 2 | 0.111111 | |
S | 439 | N439I | aAc | aTc | 2 | 2 | 0.111111 | |
S | 439 | N439K | aaC | aaG | 2 | 2 | 0.111111 | |
S | 439 | N439G | AAC | GGT | 1 | 2 | 0.055556 | |
S | 439 | N439G | AAc | GGc | 1 | 2 | 0.055556 | |
S | 439 | N439S | aAc | aGc | 1 | 2 | 0.055556 | |
S | 439 | N439S | aAC | aGT | 1 | 2 | 0.055556 | |
S | 439 | N439H | Aac | Cac | 2 | 2 | All | 0 |
S | 439 | N439E | AaC | GaG | 2 | 2 | All | 0 |
S | 439 | N439del2 | aAC | a-- | 2 | 2 | All | 0 |
S | 439 | N439G | AAC | GGT | 1 | 2 | All | 0 |
S | 439 | N439G | AAc | GGc | 1 | 2 | All | 0 |
S | 439 | N439N | aaC | aaT | 2 | 2 | AY.100 | 0.000092 |
S | 439 | N439K | aaC | aaG | 1 | 2 | AY.102 | 0.000027 |
S | 439 | N439K | aaC | aaA | 1 | 2 | AY.102 | 0.000027 |
S | 439 | N439N | aaC | aaT | 2 | 2 | AY.118 | 0.000125 |
S | 439 | N439N | aaC | aaT | 2 | 2 | AY.120 | 0.000074 |
S | 439 | N439N | aaC | aaT | 2 | 2 | AY.121 | 0.000271 |
S | 439 | N439K | aaC | aaA | 2 | 2 | AY.23 | 0.000139 |
S | 439 | N439N | aaC | aaT | 2 | 2 | AY.39 | 0.000049 |
S | 439 | N439N | aaC | aaT | 2 | 2 | AY.48 | 0.00093 |
S | 439 | N439N | aaC | aaT | 2 | 2 | AY.6 | 0.000082 |
S | 439 | N439N | aaC | aaT | 2 | 2 | AY.68 | 0.000547 |
S | 439 | N439N | aaC | aaT | 2 | 2 | AY.7 | 0.000392 |
S | 439 | N439N | aaC | aaT | 2 | 2 | AY.70 | 0.000417 |
S | 439 | N439S | aAc | aGc | 2 | 2 | B.1.1 | 0.000036 |
S | 439 | N439I | aAc | aTc | 1 | 2 | B.1.1 | 0.000018 |
S | 439 | N439I | aAC | aTT | 1 | 2 | B.1.1 | 0.000018 |
S | 439 | N439K | aaC | aaA | 2 | 2 | B.1.1.153 | 0.002191 |
S | 439 | N439K | aaC | aaA | 2 | 2 | B.1.1.39 | 0.001019 |
S | 439 | N439N | aaC | aaT | 2 | 2 | B.1.1.523 | 0.003125 |
S | 439 | N439K | aaC | aaA | 2 | 2 | B.1.1.70 | 0.000682 |
S | 439 | N439N | aaC | aaT | 2 | 2 | B.1.160 | 0.000062 |
S | 439 | N439N | aaC | aaT | 2 | 2 | B.1.177 | 0.000026 |
S | 439 | N439K | aaC | aaA | 2 | 2 | B.1.177.44 | 0.001038 |
S | 439 | N439K | aaC | aaA | 2 | 2 | B.1.177.81 | 0.000379 |
S | 439 | N439I | aAc | aTc | 1 | 2 | B.1.221 | 0.000071 |
S | 439 | N439I | aAC | aTA | 1 | 2 | B.1.221 | 0.000071 |
S | 439 | N439I | aAC | aTT | 1 | 2 | B.1.351 | 0.00003 |
S | 439 | N439S | aAC | aGT | 1 | 2 | B.1.351 | 0.00003 |
S | 439 | N439I | aAc | aTc | 1 | 2 | B.1.351 | 0.00003 |
S | 439 | N439S | aAc | aGc | 1 | 2 | B.1.351 | 0.00003 |
S | 439 | N439K | aaC | aaA | 2 | 2 | B.1.36.17 | 0.000988 |
S | 439 | N439N | aaC | aaT | 2 | 2 | B.1.36.27 | 0.001527 |
S | 439 | N439K | aaC | aaA | 2 | 2 | B.1.415.1 | 0.015152 |
S | 439 | N439K | aaC | aaA | 2 | 2 | B.1.432 | 0.022472 |
S | 439 | N439K | aaC | aaA | 2 | 2 | B.1.459 | 0.008163 |
S | 439 | N439K | aaC | aaG | 2 | 2 | B.1.526 | 0.000047 |
S | 439 | N439K | aaC | aaA | 2 | 2 | B.1.533 | 0.019231 |
S | 439 | N439K | aaC | aaA | 2 | 2 | B.1.575 | 0.000607 |
S | 439 | N439K | aaC | aaA | 2 | 2 | B.1.596 | 0.000174 |
S | 439 | N439K | aaC | aaA | 2 | 2 | B.1.617.1 | 0.000258 |
S | 439 | N439N | aaC | aaT | 2 | 2 | B.1.621 | 0.000177 |
S | 439 | N439K | aaC | aaG | 2 | 2 | B.6 | 0.00182 |
S | 439 | N439N | aaC | aaT | 2 | 2 | C.36 | 0.001821 |
S | 439 | N439N | aaC | aaT | 2 | 2 | Q.3 | 0.00029 |
S | 439 | N439K | aaC | aaG | 2 | 2 | Q.8 | 0.00033 |
S | 439 | N439N | aaC | aaT | 1 | 1 | 0.055556 | |
S | 439 | N439del | AAC | --- | 1 | 1 | A | 0.000387 |
S | 439 | N439K | aaC | aaA | 1 | 1 | A.19 | 0.009434 |
S | 439 | N439K | aaC | aaA | 1 | 1 | A.2 | 0.000662 |
S | 439 | N439Y | Aac | Tac | 1 | 1 | A.2.4 | 0.003367 |
S | 439 | N439K | aaC | aaA | 1 | 1 | A.2.5 | 0.000499 |
S | 439 | N439N | aaC | aaT | 1 | 1 | AD.2 | 0.000219 |
S | 439 | N439F | AAc | TTc | 1 | 1 | All | 0 |
S | 439 | N439X | AaC | TaA | 1 | 1 | All | 0 |
S | 439 | N439R | aAC | aGG | 1 | 1 | All | 0 |
S | 439 | N439H | Aac | Cac | 1 | 1 | AY.102 | 0.000027 |
S | 439 | N439K | aaC | aaA | 1 | 1 | AY.103 | 0.000006 |
S | 439 | N439Y | Aac | Tac | 1 | 1 | AY.103 | 0.000006 |
S | 439 | N439N | aaC | aaT | 1 | 1 | AY.108 | 0.001103 |
S | 439 | N439S | aAc | aGc | 1 | 1 | AY.119 | 0.000035 |
S | 439 | N439N | aaC | aaT | 1 | 1 | AY.16 | 0.00038 |
S | 439 | N439K | aaC | aaA | 1 | 1 | AY.20 | 0.000039 |
S | 439 | N439N | aaC | aaT | 1 | 1 | AY.23 | 0.00007 |
S | 439 | N439K | aaC | aaA | 1 | 1 | AY.24 | 0.000431 |
S | 439 | N439D | Aac | Gac | 1 | 1 | AY.25 | 0.000006 |
S | 439 | N439D | Aac | Gac | 1 | 1 | AY.29 | 0.000016 |
S | 439 | N439I | aAc | aTc | 1 | 1 | AY.3 | 0.00001 |
S | 439 | N439K | aaC | aaA | 1 | 1 | AY.34 | 0.000097 |
S | 439 | N439N | aaC | aaT | 1 | 1 | AY.34.1 | 0.00051 |
S | 439 | N439N | aaC | aaT | 1 | 1 | AY.35 | 0.000233 |
S | 439 | N439K | aaC | aaG | 1 | 1 | AY.39 | 0.000025 |
S | 439 | N439I | aAc | aTc | 1 | 1 | AY.39 | 0.000025 |
S | 439 | N439Y | Aac | Tac | 1 | 1 | AY.4 | 0.000002 |
S | 439 | N439del | AAC | --- | 1 | 1 | AY.4 | 0.000002 |
S | 439 | N439N | aaC | aaT | 1 | 1 | AY.42 | 0.00004 |
S | 439 | N439Y | Aac | Tac | 1 | 1 | AY.43 | 0.000004 |
S | 439 | N439I | aAc | aTc | 1 | 1 | AY.43 | 0.000004 |
S | 439 | N439S | aAc | aGc | 1 | 1 | AY.43 | 0.000004 |
S | 439 | N439S | aAc | aGc | 1 | 1 | AY.44 | 0.000006 |
S | 439 | N439K | aaC | aaG | 1 | 1 | AY.44 | 0.000006 |
S | 439 | N439N | aaC | aaT | 1 | 1 | AY.46.4 | 0.000165 |
S | 439 | N439S | aAc | aGc | 1 | 1 | AY.5 | 0.000021 |
S | 439 | N439del | AAC | --- | 1 | 1 | AY.5 | 0.000021 |
S | 439 | N439N | aaC | aaT | 1 | 1 | AY.57 | 0.000656 |
S | 439 | N439N | aaC | aaT | 1 | 1 | AY.61 | 0.000105 |
S | 439 | N439N | aaC | aaT | 1 | 1 | AY.66 | 0.00107 |
S | 439 | N439N | aaC | aaT | 1 | 1 | AY.71 | 0.000475 |
S | 439 | N439N | aaC | aaT | 1 | 1 | AY.78 | 0.001541 |
S | 439 | N439N | aaC | aaT | 1 | 1 | AY.85 | 0.000427 |
S | 439 | N439N | aaC | aaT | 1 | 1 | AY.9.2 | 0.000037 |
S | 439 | N439N | aaC | aaT | 1 | 1 | AY.92 | 0.000287 |
S | 439 | N439N | aaC | aaT | 1 | 1 | AY.99.1 | 0.001553 |
S | 439 | N439N | aaC | aaT | 1 | 1 | AZ.2 | 0.000821 |
S | 439 | N439N | aaC | aaT | 1 | 1 | B | 0.000128 |
S | 439 | N439del | AAC | --- | 1 | 1 | B | 0.000128 |
S | 439 | N439Y | Aac | Tac | 1 | 1 | B.1 | 0.000009 |
S | 439 | N439F | AAc | TTc | 1 | 1 | B.1 | 0.000009 |
S | 439 | N439T | aAc | aCc | 1 | 1 | B.1.1 | 0.000018 |
S | 439 | N439N | aaC | aaT | 1 | 1 | B.1.1.176 | 0.000439 |
S | 439 | N439N | aaC | aaT | 1 | 1 | B.1.1.192 | 0.002309 |
S | 439 | N439K | aaC | aaG | 1 | 1 | B.1.1.198 | 0.001468 |
S | 439 | N439K | aaC | aaG | 1 | 1 | B.1.1.203 | 0.016949 |
S | 439 | N439N | aaC | aaT | 1 | 1 | B.1.1.214 | 0.000055 |
S | 439 | N439K | aaC | aaA | 1 | 1 | B.1.1.269 | 0.001353 |
S | 439 | N439N | aaC | aaT | 1 | 1 | B.1.1.306 | 0.000438 |
S | 439 | N439N | aaC | aaT | 1 | 1 | B.1.1.315 | 0.008475 |
S | 439 | N439N | aaC | aaT | 1 | 1 | B.1.1.33 | 0.000421 |
S | 439 | N439K | aaC | aaG | 1 | 1 | B.1.1.33 | 0.000421 |
S | 439 | N439N | aaC | aaT | 1 | 1 | B.1.1.378 | 0.007299 |
S | 439 | N439K | aaC | aaA | 1 | 1 | B.1.1.379 | 0.03125 |
S | 439 | N439I | aAc | aTc | 1 | 1 | B.1.1.409 | 0.002833 |
S | 439 | N439N | aaC | aaT | 1 | 1 | B.1.1.41 | 0.006329 |
S | 439 | N439N | aaC | aaT | 1 | 1 | B.1.1.446 | 0.076923 |
S | 439 | N439K | aaC | aaA | 1 | 1 | B.1.1.50 | 0.000679 |
S | 439 | N439K | aaC | aaA | 1 | 1 | B.1.1.51 | 0.001718 |
S | 439 | N439del | AAC | --- | 1 | 1 | B.1.1.519 | 0.00004 |
S | 439 | N439N | aaC | aaT | 1 | 1 | B.1.1.519 | 0.00004 |
S | 439 | N439K | aaC | aaA | 1 | 1 | B.1.1.523 | 0.001563 |
S | 439 | N439K | aaC | aaA | 1 | 1 | B.1.1.528 | 0.004808 |
S | 439 | N439D | AaC | GaT | 1 | 1 | B.1.1.7 | 0.000001 |
S | 439 | N439K | aaC | aaA | 1 | 1 | B.1.143 | 0.021277 |
S | 439 | N439K | aaC | aaA | 1 | 1 | B.1.157 | 0.002985 |
S | 439 | N439D | Aac | Gac | 1 | 1 | B.1.160 | 0.000031 |
S | 439 | N439K | aaC | aaA | 1 | 1 | B.1.160.8 | 0.001289 |
S | 439 | N439T | aAc | aCc | 1 | 1 | B.1.177 | 0.000013 |
S | 439 | N439del1 | aaC | aa- | 1 | 1 | B.1.177 | 0.000013 |
S | 439 | N439del2 | aAC | a-- | 1 | 1 | B.1.177 | 0.000013 |
S | 439 | N439del | AAC | --- | 1 | 1 | B.1.177.18 | 0.00116 |
S | 439 | N439N | aaC | aaT | 1 | 1 | B.1.177.21 | 0.000076 |
S | 439 | N439K | aaC | aaA | 1 | 1 | B.1.177.31 | 0.011494 |
S | 439 | N439N | aaC | aaT | 1 | 1 | B.1.177.35 | 0.000691 |
S | 439 | N439del | AAC | --- | 1 | 1 | B.1.177.4 | 0.000211 |
S | 439 | N439N | aaC | aaT | 1 | 1 | B.1.177.44 | 0.000519 |
S | 439 | N439N | aaC | aaT | 1 | 1 | B.1.177.5 | 0.001242 |
S | 439 | N439Y | Aac | Tac | 1 | 1 | B.1.177.51 | 0.004566 |
S | 439 | N439K | aaC | aaG | 1 | 1 | B.1.177.76 | 0.002494 |
S | 439 | N439N | aaC | aaT | 1 | 1 | B.1.177.82 | 0.000477 |
S | 439 | N439del | AAC | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 439 | N439K | aaC | aaA | 1 | 1 | B.1.2 | 0.000009 |
S | 439 | N439del2 | aAC | a-- | 1 | 1 | B.1.2 | 0.000009 |
S | 439 | N439del1 | aaC | aa- | 1 | 1 | B.1.2 | 0.000009 |
S | 439 | N439N | aaC | aaT | 1 | 1 | B.1.214.2 | 0.0006 |
S | 439 | N439K | aaC | aaA | 1 | 1 | B.1.214.2 | 0.0006 |
S | 439 | N439K | aaC | aaA | 1 | 1 | B.1.237 | 0.004975 |
S | 439 | N439K | aaC | aaA | 1 | 1 | B.1.247 | 0.014925 |
S | 439 | N439D | AaC | GaT | 1 | 1 | B.1.258 | 0.000067 |
S | 439 | N439del | AAC | --- | 1 | 1 | B.1.258 | 0.000067 |
S | 439 | N439X | AaC | TaA | 1 | 1 | B.1.258 | 0.000067 |
S | 439 | N439del | AAC | --- | 1 | 1 | B.1.258.17 | 0.000104 |
S | 439 | N439K | aaC | aaA | 1 | 1 | B.1.293 | 0.0125 |
S | 439 | N439del1 | aaC | aa- | 1 | 1 | B.1.336 | 0.002439 |
S | 439 | N439N | aaC | aaT | 1 | 1 | B.1.336 | 0.002439 |
S | 439 | N439M | aAC | aTG | 1 | 1 | B.1.351 | 0.00003 |
S | 439 | N439R | aAC | aGG | 1 | 1 | B.1.351 | 0.00003 |
S | 439 | N439K | aaC | aaG | 1 | 1 | B.1.351 | 0.00003 |
S | 439 | N439del | AAC | --- | 1 | 1 | B.1.351.2 | 0.000303 |
S | 439 | N439N | aaC | aaT | 1 | 1 | B.1.36.1 | 0.00114 |
S | 439 | N439K | aaC | aaA | 1 | 1 | B.1.362 | 0.001541 |
S | 439 | N439K | aaC | aaA | 1 | 1 | B.1.367 | 0.000792 |
S | 439 | N439K | aaC | aaA | 1 | 1 | B.1.380 | 0.006623 |
S | 439 | N439K | aaC | aaA | 1 | 1 | B.1.395 | 0.007042 |
S | 439 | N439K | aaC | aaA | 1 | 1 | B.1.406 | 0.006061 |
S | 439 | N439K | aaC | aaA | 1 | 1 | B.1.427 | 0.00005 |
S | 439 | N439K | aaC | aaG | 1 | 1 | B.1.429 | 0.000024 |
S | 439 | N439N | aaC | aaT | 1 | 1 | B.1.429 | 0.000024 |
S | 439 | N439S | aAc | aGc | 1 | 1 | B.1.429 | 0.000024 |
S | 439 | N439T | aAC | aCA | 1 | 1 | B.1.466.2 | 0.000391 |
S | 439 | N439K | aaC | aaA | 1 | 1 | B.1.473 | 0.019231 |
S | 439 | N439del | AAC | --- | 1 | 1 | B.1.525 | 0.000113 |
S | 439 | N439N | aaC | aaT | 1 | 1 | B.1.526 | 0.000024 |
S | 439 | N439N | aaC | aaT | 1 | 1 | B.1.564 | 0.000426 |
S | 439 | N439K | aaC | aaA | 1 | 1 | B.1.576 | 0.000907 |
S | 439 | N439I | aAC | aTT | 1 | 1 | B.1.577 | 0.000687 |
S | 439 | N439N | aaC | aaT | 1 | 1 | B.1.596 | 0.000087 |
S | 439 | N439K | aaC | aaA | 1 | 1 | B.1.599 | 0.00365 |
S | 439 | N439N | aaC | aaT | 1 | 1 | B.1.617.1 | 0.000129 |
S | 439 | N439del1 | Aac | -ac | 1 | 1 | B.1.617.2 | 0.000004 |
S | 439 | N439del | AAC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
S | 439 | N439H | Aac | Cac | 1 | 1 | B.1.617.2 | 0.000004 |
S | 439 | N439del | AAC | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 439 | N439K | aaC | aaG | 1 | 1 | B.1.623 | 0.000536 |
S | 439 | N439K | aaC | aaA | 1 | 1 | B.1.627 | 0.00202 |
S | 439 | N439N | aaC | aaT | 1 | 1 | B.1.628 | 0.000352 |
S | 439 | N439K | aaC | aaA | 1 | 1 | B.1.631 | 0.003367 |
S | 439 | N439K | aaC | aaA | 1 | 1 | B.1.638 | 0.052632 |
S | 439 | N439del | AAC | --- | 1 | 1 | B.34 | 0.013699 |
S | 439 | N439Y | Aac | Tac | 1 | 1 | B.6 | 0.00091 |
S | 439 | N439N | aaC | aaT | 1 | 1 | C.35 | 0.000774 |
S | 439 | N439K | aaC | aaG | 1 | 1 | L.3 | 0.003546 |
S | 439 | N439K | aaC | aaG | 1 | 1 | P.1.12 | 0.000484 |
S | 439 | N439D | Aac | Gac | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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