CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 43

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S43F43FsynttCttT55875587121689-21691
S43F43deldelTTC---149149121689-21691
S43F43LnonsynttCttG50210.4221689-21691
S43F43LnonsynTtcCtc50160.3221689-21691
S43F43LnonsynttCttA50100.221689-21691
S43F43LnonsynTtCCtT5020.0421689-21691
S43F43LnonsynTtCCtG5010.0221689-21691
S43F43YnonsyntTctAc30280.93333321689-21691
S43F43YnonsyntTCtAT3020.066666721689-21691
S43F43del2delTTc--c15120.821689-21691
S43F43del2deltTCt--1520.13333321689-21691
S43F43del2delTTC--N1510.066666721689-21691
S43F43SnonsyntTctCc14110.78571421689-21691
S43F43SnonsyntTCtCT1420.14285721689-21691
S43F43SnonsyntTCtCA1410.071428621689-21691
S43F43VnonsynTtcGtc430.7521689-21691
S43F43HnonsynTTCCAT420.521689-21691
S43F43HnonsynTTcCAc420.521689-21691
S43F43VnonsynTtCGtT410.2521689-21691
S43F43CnonsyntTctGc33121689-21691
S43F43del1delttCtt-320.66666721689-21691
S43F43del1delTtc-tc310.33333321689-21691
S43F43InonsynTtcAtc11121689-21691
S43F43KnonsynTTCAAG11121689-21691
S43F43QnonsynTTCCAG11121689-21691
S43F43NnonsynTTcAAc11121689-21691
S43F43EnonsynTTCGAA11121689-21691
S43F43GnonsynTTcGGc11121689-21691

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S43F43FttCttT55875587All0.001069
S43F43FttCttT10241024B.1.1.70.000917
S43F43FttCttT394394B.1.4290.00927
S43F43FttCttT363363B.1.20.003196
S43F43FttCttT296296B.1.617.20.001115
S43F43FttCttT219219AY.40.000341
S43F43FttCttT152152AY.1030.000944
S43F43delTTC---149149All0.000028
S43F43FttCttT148148AY.1200.005502
S43F43FttCttT146146AY.440.000889
S43F43FttCttT141141B.1.6280.049683
S43F43FttCttT132132AY.390.003262
S43F43FttCttT127127B.10.001163
S43F43FttCttT122122B.1.2430.008489
S43F43FttCttT121121AY.430.000536
S43F43FttCttT111111B.1.5260.002609
S43F43FttCttT102102C.370.011838
S43F43FttCttT9696AY.1020.002545
S43F43FttCttT8888B.1.5750.026699
S43F43FttCttT8787B.1.10.001578
S43F43FttCttT8282AY.290.001293
S43F43FttCttT7979B.1.5230.193627
S43F43FttCttT6868AY.250.000409
S43F43FttCttT6767B.1.1600.00209
S43F43FttCttT6666B.1.1770.000869
S43F43FttCttT6060B.1.160.140.127119
S43F43FttCttT6060B.1.177.810.011359
S43F43FttCttT5454AY.30.000537
S43F43FttCttT5252P.10.000819
S43F43FttCttT5151B.1.3510.001516
S43F43LttCttG2150All0.000004
S43F43LTtcCtc1650All0.000003
S43F43LttCttA1050All0.000002
S43F43LTtCCtT250All0
S43F43LTtCCtG150All0
S43F43delTTC---4343B.1.1.70.000038
S43F43FttCttT4242AY.200.001632
S43F43FttCttT4141B.1.6161
S43F43FttCttT3939B.1.1.2140.002163
S43F43FttCttT3636AY.4.20.000781
S43F43FttCttT3535B.1.2210.002486
S43F43YtTctAc2830All0.000005
S43F43YtTCtAT230All0
S43F43FttCttT2929B.1.1.280.009026
S43F43FttCttT2828AY.230.001953
S43F43FttCttT2626B.1.177.730.014723
S43F43FttCttT2525B.1.4270.001262
S43F43FttCttT2424B.1.177.770.017429
S43F43FttCttT2323B.1.2580.001531
S43F43FttCttT2121AY.7.20.011745
S43F43YtTctAc2121B.1.1.70.000019
S43F43FttCttT2121B.1.2340.002771
S43F43FttCttT2121B.1.2400.004527
S43F43FttCttT2020B.1.1.5190.000794
S43F43FttCttT1919R.10.00171
S43F43FttCttT1818B.1.3750.014754
S43F43FttCttT1818P.1.140.00086
S43F43FttCttT1616AY.330.001068
S43F43del2TTc--c1215All0.000002
S43F43del2tTCt--215All0
S43F43del2TTC--N115All0
S43F43FttCttT1515AY.420.000603
S43F43StTctCc1114All0.000002
S43F43StTCtCT214All0
S43F43StTCtCA114All0
S43F43FttCttT1414AY.260.000396
S43F43FttCttT1414AY.50.000289
S43F43LttCttG914B.1.1.70.000008
S43F43LTtcCtc514B.1.1.70.000004
S43F43FttCttT1414B.1.5960.00122
S43F43delTTC---1313AY.40.00002
S43F43FttCttT1212AY.750.000672
S43F43FttCttT1212AY.90.000811
S43F43delTTC---1111AY.430.000049
S43F43FttCttT1111AY.470.000342
S43F43FttCttT1111B.1.6390.23913
S43F43FttCttT1010AY.1000.00046
S43F43FttCttT1010B.1.1.10.003267
S43F43FttCttT1010B.1.466.20.003912
S43F43delTTC---99AY.250.000054
S43F43FttCttT99AY.460.000937
S43F43FttCttT99AY.530.002588
S43F43FttCttT99AY.60.00037
S43F43delTTC---99B.1.1770.000119
S43F43FttCttT99B.1.360.001313
S43F43FttCttT99B.1.438.10.000965
S43F43LttCttG99B.1.5250.001018
S43F43FttCttT88B.1.1.4660.069565
S43F43FttCttT88B.1.4160.010152
S43F43FttCttT77AY.450.000852
S43F43FttCttT77AY.540.000667
S43F43FttCttT77AY.610.000733
S43F43FttCttT77AY.9.20.000257
S43F43FttCttT77P.1.100.001886
S43F43FttCttT77P.1.150.001626
S43F43FttCttT66AY.1180.000376
S43F43FttCttT66AY.39.10.000238
S43F43FttCttT66B.1.1.3060.00263
S43F43FttCttT66B.1.3110.001647
S43F43FttCttT66B.1.3960.004234
S43F43delTTC---55AY.1020.000133
S43F43FttCttT55AY.1140.001156
S43F43delTTC---55AY.330.000334
S43F43delTTC---55AY.4.50.000537
S43F43FttCttT55AY.98.10.000242
S43F43FttCttT55B.1.1.3770.006906
S43F43FttCttT55B.1.177.600.001092
S43F43FttCttT55B.1.258.170.00052
S43F43FttCttT55B.1.6210.000443
S43F43HTTcCAc240.111111
S43F43YtTCtAT240.111111
S43F43HTTCCAT240.111111
S43F43LTtcCtc240.111111
S43F43LTtCCtT240.111111
S43F43YtTctAc240.111111
S43F43VTtcGtc34All0.000001
S43F43HTTcCAc24All0
S43F43HTTCCAT24All0
S43F43VTtCGtT14All0
S43F43FttCttT44AY.1170.000338
S43F43FttCttT44AY.99.20.000369
S43F43delTTC---44B.1.10.000073
S43F43FttCttT44B.1.1.1700.004988
S43F43FttCttT44B.1.1.630.001543
S43F43FttCttT44B.1.177.330.006579
S43F43FttCttT44B.1.3690.001141
S43F43FttCttT44B.1.5870.00759
S43F43FttCttT44D.20.0003
S43F43FttCttT44P.20.000747
S43F43FttCttT33A.270.004967
S43F43CtTctGc33All0.000001
S43F43del1ttCtt-23All0
S43F43del1Ttc-tc13All0
S43F43FttCttT33AY.1080.003308
S43F43FttCttT33AY.1190.000106
S43F43FttCttT33AY.1210.000406
S43F43FttCttT33AY.410.000882
S43F43FttCttT33AY.46.20.001906
S43F43FttCttT33AY.46.60.000217
S43F43FttCttT33AY.690.00056
S43F43FttCttT33AY.730.001996
S43F43FttCttT33AY.780.004622
S43F43FttCttT33AY.980.000237
S43F43LTtcCtc13B.10.000009
S43F43LttCttG13B.10.000009
S43F43LttCttA13B.10.000009
S43F43FttCttT33B.1.1.2070.003546
S43F43FttCttT33B.1.1.3170.001235
S43F43FttCttT33B.1.1.3480.002389
S43F43FttCttT33B.1.1.370.000579
S43F43StTctCc23B.1.1.70.000002
S43F43StTCtCT13B.1.1.70.000001
S43F43FttCttT33B.1.177.320.004049
S43F43FttCttT33B.1.177.850.016304
S43F43FttCttT33B.1.4150.042857
S43F43FttCttT33B.1.5770.002062
S43F43FttCttT33B.1.780.025641
S43F43FttCttT33P.1.70.000958
S43F43FttCttT33Q.10.000379
S43F43FttCttT33Q.80.000495
S43F43FttCttT220.111111
S43F43FttCttT22A.23.10.001408
S43F43FttCttT22AM.40.007143
S43F43FttCttT22AY.1010.000981
S43F43delTTC---22AY.1010.000981
S43F43FttCttT22AY.120.10.000642
S43F43FttCttT22AY.16.10.00094
S43F43StTctCc22AY.230.000139
S43F43FttCttT22AY.240.000862
S43F43FttCttT22AY.3.10.000171
S43F43FttCttT22AY.340.000194
S43F43FttCttT22AY.34.10.00102
S43F43FttCttT22AY.360.000296
S43F43del2TTc--c22AY.40.000003
S43F43del2TTc--c22AY.430.000009
S43F43FttCttT22AY.480.00093
S43F43delTTC---22AY.50.000041
S43F43FttCttT22AY.5.30.000675
S43F43FttCttT22AY.880.001768
S43F43FttCttT22AY.99.10.003106
S43F43delTTC---22B.10.000018
S43F43YtTctAc22B.1.10.000036
S43F43FttCttT22B.1.1.2160.001781
S43F43FttCttT22B.1.1.2200.003717
S43F43FttCttT22B.1.1.3980.006452
S43F43FttCttT22B.1.1.700.000682
S43F43FttCttT22B.1.1.710.012121
S43F43delTTC---22B.1.1600.000062
S43F43FttCttT22B.1.160.300.005952
S43F43LttCttA12B.1.1770.000013
S43F43LTtcCtc12B.1.1770.000013
S43F43FttCttT22B.1.177.210.000153
S43F43FttCttT22B.1.177.70.00033
S43F43delTTC---22B.1.1790.007519
S43F43LttCttA22B.1.20.000018
S43F43FttCttT22B.1.2410.001623
S43F43FttCttT22B.1.258.110.000793
S43F43FttCttT22B.1.3300.057143
S43F43FttCttT22B.1.36.70.008
S43F43FttCttT22B.1.3810.015625
S43F43FttCttT22B.1.429.10.024096
S43F43FttCttT22B.1.4970.00063
S43F43FttCttT22B.1.5610.000794
S43F43FttCttT22B.1.5950.000522
S43F43FttCttT22B.1.6370.000146
S43F43FttCttT22B.400.000729
S43F43FttCttT22C.20.032258
S43F43FttCttT22C.36.30.001134
S43F43FttCttT22P.1.160.000748
S43F43FttCttT22Q.40.00091
S43F43LTtcCtc11A.20.000662
S43F43FttCttT11A.20.000662
S43F43FttCttT11A.210.00277
S43F43FttCttT11A.220.066667
S43F43FttCttT11AD.20.000219
S43F43delTTC---11AD.20.000219
S43F43ETTCGAA11All0
S43F43NTTcAAc11All0
S43F43GTTcGGc11All0
S43F43ITtcAtc11All0
S43F43KTTCAAG11All0
S43F43QTTCCAG11All0
S43F43FttCttT11AP.10.001502
S43F43FttCttT11AU.10.001266
S43F43delTTC---11AY.1000.000046
S43F43LTtcCtc11AY.1020.000027
S43F43del2TTc--c11AY.1020.000027
S43F43delTTC---11AY.1030.000006
S43F43FttCttT11AY.1040.001984
S43F43FttCttT11AY.1050.000643
S43F43FttCttT11AY.1060.000335
S43F43delTTC---11AY.1080.001103
S43F43FttCttT11AY.1100.000113
S43F43FttCttT11AY.1110.000183
S43F43LTtcCtc11AY.1110.000183
S43F43FttCttT11AY.1130.000142
S43F43del2TTC--N11AY.1140.000231
S43F43FttCttT11AY.120.20.001285
S43F43LTtcCtc11AY.120.2.10.000498
S43F43FttCttT11AY.130.000161
S43F43FttCttT11AY.140.000088
S43F43YtTctAc11AY.230.00007
S43F43CtTctGc11AY.250.000006
S43F43delTTC---11AY.260.000028
S43F43FttCttT11AY.270.000065
S43F43VTtcGtc11AY.290.000016
S43F43StTctCc11AY.30.00001
S43F43FttCttT11AY.320.000532
S43F43del2tTCt--11AY.330.000067
S43F43delTTC---11AY.34.10.00051
S43F43FttCttT11AY.370.000316
S43F43LttCttA11AY.390.000025
S43F43delTTC---11AY.39.10.00004
S43F43StTctCc11AY.40.000002
S43F43FttCttT11AY.4.2.10.000149
S43F43FttCttT11AY.4.50.000107
S43F43FttCttT11AY.400.000964
S43F43LttCttA11AY.420.00004
S43F43delTTC---11AY.420.00004
S43F43StTCtCA11AY.420.00004
S43F43del2TTc--c11AY.420.00004
S43F43LttCttA11AY.430.000004
S43F43ITtcAtc11AY.430.000004
S43F43StTctCc11AY.440.000006
S43F43YtTctAc11AY.440.000006
S43F43delTTC---11AY.440.000006
S43F43del2TTc--c11AY.460.000104
S43F43FttCttT11AY.46.40.000165
S43F43del2TTc--c11AY.46.60.000072
S43F43FttCttT11AY.490.003195
S43F43del2TTc--c11AY.50.000021
S43F43delTTC---11AY.5.30.000337
S43F43FttCttT11AY.500.000799
S43F43FttCttT11AY.520.000814
S43F43FttCttT11AY.550.000917
S43F43FttCttT11AY.590.00053
S43F43delTTC---11AY.600.000938
S43F43FttCttT11AY.630.000387
S43F43delTTC---11AY.680.000274
S43F43FttCttT11AY.680.000274
S43F43delTTC---11AY.720.001361
S43F43FttCttT11AY.740.000116
S43F43FttCttT11AY.75.10.00018
S43F43FttCttT11AY.770.001127
S43F43delTTC---11AY.780.001541
S43F43FttCttT11AY.840.000437
S43F43VTtcGtc11AY.850.000427
S43F43FttCttT11AY.9.10.000084
S43F43FttCttT11AY.960.002075
S43F43FttCttT11AY.970.001701
S43F43del2TTc--c11AY.98.10.000048
S43F43FttCttT11B0.000128
S43F43LTtcCtc11B0.000128
S43F43GTTcGGc11B.10.000009
S43F43StTctCc11B.1.10.000018
S43F43ETTCGAA11B.1.10.000018
S43F43LttCttA11B.1.10.000018
S43F43FttCttT11B.1.1.1170.009709
S43F43FttCttT11B.1.1.1530.001095
S43F43FttCttT11B.1.1.1940.00495
S43F43FttCttT11B.1.1.2220.000204
S43F43FttCttT11B.1.1.2410.00207
S43F43LttCttG11B.1.1.250.000569
S43F43FttCttT11B.1.1.250.000569
S43F43FttCttT11B.1.1.2650.003155
S43F43delTTC---11B.1.1.3060.000438
S43F43LTtCCtG11B.1.1.3060.000438
S43F43delTTC---11B.1.1.3110.000358
S43F43FttCttT11B.1.1.3120.001912
S43F43FttCttT11B.1.1.3150.008475
S43F43FttCttT11B.1.1.3160.000925
S43F43FttCttT11B.1.1.3180.000302
S43F43CtTctGc11B.1.1.330.000421
S43F43FttCttT11B.1.1.330.000421
S43F43FttCttT11B.1.1.3690.000446
S43F43delTTC---11B.1.1.370.000193
S43F43StTctCc11B.1.1.370.000193
S43F43FttCttT11B.1.1.450.014085
S43F43VTtCGtT11B.1.1.70.000001
S43F43del2TTc--c11B.1.1.70.000001
S43F43delTTC---11B.1.1.700.000341
S43F43FttCttT11B.1.1110.001175
S43F43FttCttT11B.1.1390.000733
S43F43StTctCc11B.1.1600.000031
S43F43VTtcGtc11B.1.160.280.002924
S43F43FttCttT11B.1.160.280.002924
S43F43CtTctGc11B.1.1770.000013
S43F43delTTC---11B.1.177.160.000664
S43F43FttCttT11B.1.177.170.000821
S43F43delTTC---11B.1.177.170.000821
S43F43del1Ttc-tc11B.1.177.180.00116
S43F43LTtcCtc11B.1.177.180.00116
S43F43delTTC---11B.1.177.190.001431
S43F43FttCttT11B.1.177.40.000211
S43F43delTTC---11B.1.177.40.000211
S43F43FttCttT11B.1.177.410.0025
S43F43FttCttT11B.1.177.440.000519
S43F43FttCttT11B.1.177.500.004695
S43F43FttCttT11B.1.177.520.001757
S43F43delTTC---11B.1.177.560.000668
S43F43delTTC---11B.1.177.60.000977
S43F43FttCttT11B.1.177.620.001192
S43F43delTTC---11B.1.177.70.000165
S43F43FttCttT11B.1.177.820.000477
S43F43delTTC---11B.1.177.830.001481
S43F43del1ttCtt-11B.1.20.000009
S43F43FttCttT11B.1.2060.000816
S43F43FttCttT11B.1.214.20.0006
S43F43FttCttT11B.1.220.001318
S43F43FttCttT11B.1.2370.004975
S43F43NTTcAAc11B.1.2580.000067
S43F43FttCttT11B.1.258.30.001675
S43F43FttCttT11B.1.2680.010417
S43F43delTTC---11B.1.3110.000275
S43F43FttCttT11B.1.3240.001605
S43F43FttCttT11B.1.3290.000608
S43F43FttCttT11B.1.351.20.000303
S43F43LTtcCtc11B.1.360.000146
S43F43FttCttT11B.1.36.180.00042
S43F43del2tTCt--11B.1.36.290.000517
S43F43FttCttT11B.1.36.290.000517
S43F43FttCttT11B.1.36.80.001
S43F43FttCttT11B.1.36.90.003215
S43F43FttCttT11B.1.3620.001541
S43F43FttCttT11B.1.4000.000429
S43F43FttCttT11B.1.4110.003704
S43F43LttCttA11B.1.4240.008065
S43F43FttCttT11B.1.4480.002625
S43F43LttCttA11B.1.4590.004082
S43F43FttCttT11B.1.4590.004082
S43F43delTTC---11B.1.4700.001404
S43F43FttCttT11B.1.5090.000866
S43F43FttCttT11B.1.5250.000113
S43F43delTTC---11B.1.5260.000024
S43F43FttCttT11B.1.5650.00081
S43F43FttCttT11B.1.5680.001111
S43F43FttCttT11B.1.5760.000907
S43F43FttCttT11B.1.5780.017857
S43F43FttCttT11B.1.5820.000491
S43F43FttCttT11B.1.5880.00091
S43F43StTctCc11B.1.5960.000087
S43F43FttCttT11B.1.6090.000479
S43F43FttCttT11B.1.6100.003546
S43F43StTCtCT11B.1.617.20.000004
S43F43delTTC---11B.1.617.20.000004
S43F43YtTctAc11B.1.617.20.000004
S43F43del2TTc--c11B.1.617.20.000004
S43F43QTTCCAG11B.1.617.20.000004
S43F43KTTCAAG11B.1.617.20.000004
S43F43FttCttT11B.1.617.30.002985
S43F43delTTC---11B.1.6200.000946
S43F43del1ttCtt-11B.1.6210.000089
S43F43delTTC---11B.1.6210.000089
S43F43FttCttT11B.1.621.10.000506
S43F43LttCttG11B.1.6360.006711
S43F43FttCttT11B.600.015873
S43F43FttCttT11C.160.00106
S43F43FttCttT11C.350.000774
S43F43delTTC---11C.360.000911
S43F43FttCttT11P.1.10.000318
S43F43FttCttT11P.1.120.000484
S43F43FttCttT11P.1.170.000162
S43F43delTTC---11Q.10.000126
S43F43delTTC---11Q.20.000613
S43F43FttCttT11Q.30.000145
S43F43FttCttT11W.40.001351