CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 427 | D427N | nonsyn | Gat | Aat | 2396 | 2395 | 0.999583 | 22841-22843 | |
S | 427 | D427N | nonsyn | GaT | AaC | 2396 | 1 | 0.000417362 | 22841-22843 | |
S | 427 | D427D | syn | gaT | gaC | 1115 | 1115 | 1 | 22841-22843 | |
S | 427 | D427V | nonsyn | gAt | gTt | 818 | 818 | 1 | 22841-22843 | |
S | 427 | D427Y | nonsyn | Gat | Tat | 427 | 427 | 1 | 22841-22843 | |
S | 427 | D427G | nonsyn | gAt | gGt | 412 | 412 | 1 | 22841-22843 | |
S | 427 | D427H | nonsyn | Gat | Cat | 270 | 269 | 0.996296 | 22841-22843 | |
S | 427 | D427H | nonsyn | GaT | CaC | 270 | 1 | 0.0037037 | 22841-22843 | |
S | 427 | D427A | nonsyn | gAt | gCt | 122 | 122 | 1 | 22841-22843 | |
S | 427 | D427E | nonsyn | gaT | gaG | 41 | 34 | 0.829268 | 22841-22843 | |
S | 427 | D427E | nonsyn | gaT | gaA | 41 | 7 | 0.170732 | 22841-22843 | |
S | 427 | D427del | del | GAT | --- | 19 | 19 | 1 | 22841-22843 | |
S | 427 | D427del2 | del | gAT | g-- | 4 | 3 | 0.75 | 22841-22843 | |
S | 427 | D427del2 | del | GAt | --t | 4 | 1 | 0.25 | 22841-22843 | |
S | 427 | D427del1 | del | Gat | -at | 2 | 2 | 1 | 22841-22843 | |
S | 427 | D427K | nonsyn | GaT | AaG | 1 | 1 | 1 | 22841-22843 | |
S | 427 | D427C | nonsyn | GAt | TGt | 1 | 1 | 1 | 22841-22843 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 427 | D427N | Gat | Aat | 2395 | 2396 | All | 0.000458 |
S | 427 | D427N | GaT | AaC | 1 | 2396 | All | 0 |
S | 427 | D427N | Gat | Aat | 1262 | 1262 | B.1.1.7 | 0.00113 |
S | 427 | D427D | gaT | gaC | 1115 | 1115 | All | 0.000213 |
S | 427 | D427N | Gat | Aat | 953 | 953 | P.1 | 0.015014 |
S | 427 | D427V | gAt | gTt | 818 | 818 | All | 0.000156 |
S | 427 | D427V | gAt | gTt | 720 | 720 | AY.4 | 0.001121 |
S | 427 | D427D | gaT | gaC | 523 | 523 | B.1.177.80 | 1 |
S | 427 | D427Y | Gat | Tat | 427 | 427 | All | 0.000082 |
S | 427 | D427G | gAt | gGt | 412 | 412 | All | 0.000079 |
S | 427 | D427D | gaT | gaC | 273 | 273 | B.1.177 | 0.003595 |
S | 427 | D427H | Gat | Cat | 269 | 270 | All | 0.000051 |
S | 427 | D427H | GaT | CaC | 1 | 270 | All | 0 |
S | 427 | D427A | gAt | gCt | 122 | 122 | All | 0.000023 |
S | 427 | D427G | gAt | gGt | 109 | 109 | AY.43 | 0.000483 |
S | 427 | D427D | gaT | gaC | 93 | 93 | B.1.1.180 | 1 |
S | 427 | D427G | gAt | gGt | 84 | 84 | B.1.617.2 | 0.000316 |
S | 427 | D427A | gAt | gCt | 72 | 72 | AY.25 | 0.000433 |
S | 427 | D427H | Gat | Cat | 65 | 65 | B.1.617.2 | 0.000245 |
S | 427 | D427Y | Gat | Tat | 63 | 63 | B.1.1.7 | 0.000056 |
S | 427 | D427Y | Gat | Tat | 53 | 53 | P.1 | 0.000835 |
S | 427 | D427D | gaT | gaC | 42 | 42 | B.1.526 | 0.000987 |
S | 427 | D427E | gaT | gaG | 34 | 41 | All | 0.000007 |
S | 427 | D427E | gaT | gaA | 7 | 41 | All | 0.000001 |
S | 427 | D427G | gAt | gGt | 37 | 37 | AY.4 | 0.000058 |
S | 427 | D427H | Gat | Cat | 35 | 35 | AY.103 | 0.000217 |
S | 427 | D427N | Gat | Aat | 35 | 35 | Q.8 | 0.005772 |
S | 427 | D427Y | Gat | Tat | 34 | 34 | AY.4 | 0.000053 |
S | 427 | D427D | gaT | gaC | 32 | 32 | B.1.1.7 | 0.000029 |
S | 427 | D427Y | Gat | Tat | 31 | 31 | B.1.617.2 | 0.000117 |
S | 427 | D427E | gaT | gaG | 29 | 29 | P.1 | 0.000457 |
S | 427 | D427G | gAt | gGt | 24 | 24 | AY.25 | 0.000144 |
S | 427 | D427Y | Gat | Tat | 23 | 23 | AY.103 | 0.000143 |
S | 427 | D427G | gAt | gGt | 23 | 23 | AY.5 | 0.000475 |
S | 427 | D427G | gAt | gGt | 21 | 21 | AY.6 | 0.000864 |
S | 427 | D427D | gaT | gaC | 21 | 21 | B.1.617.2 | 0.000079 |
S | 427 | D427V | gAt | gTt | 20 | 20 | B.1.617.2 | 0.000075 |
S | 427 | D427del | GAT | --- | 19 | 19 | All | 0.000004 |
S | 427 | D427H | Gat | Cat | 18 | 19 | B.1.1.7 | 0.000016 |
S | 427 | D427H | GaT | CaC | 1 | 19 | B.1.1.7 | 0.000001 |
S | 427 | D427D | gaT | gaC | 18 | 18 | AY.121 | 0.002436 |
S | 427 | D427H | Gat | Cat | 18 | 18 | AY.44 | 0.00011 |
S | 427 | D427D | gaT | gaC | 17 | 17 | B.1.637 | 0.001242 |
S | 427 | D427H | Gat | Cat | 15 | 15 | AY.20 | 0.000583 |
S | 427 | D427H | Gat | Cat | 15 | 15 | AY.43 | 0.000066 |
S | 427 | D427Y | Gat | Tat | 15 | 15 | AY.63 | 0.005803 |
S | 427 | D427H | Gat | Cat | 15 | 15 | AY.98 | 0.001185 |
S | 427 | D427G | gAt | gGt | 14 | 14 | AY.39 | 0.000346 |
S | 427 | D427H | Gat | Cat | 14 | 14 | P.1 | 0.000221 |
S | 427 | D427G | gAt | gGt | 13 | 13 | AY.44 | 0.000079 |
S | 427 | D427N | Gat | Aat | 13 | 13 | AY.5 | 0.000268 |
S | 427 | D427G | gAt | gGt | 13 | 13 | B.1.177.18 | 0.015081 |
S | 427 | D427V | gAt | gTt | 13 | 13 | B.1.480 | 0.032338 |
S | 427 | D427N | Gat | Aat | 13 | 13 | P.1.12 | 0.006292 |
S | 427 | D427H | Gat | Cat | 12 | 12 | AY.4 | 0.000019 |
S | 427 | D427Y | Gat | Tat | 12 | 12 | AY.43 | 0.000053 |
S | 427 | D427G | gAt | gGt | 12 | 12 | B.1.429 | 0.000282 |
S | 427 | D427G | gAt | gGt | 11 | 11 | AY.103 | 0.000068 |
S | 427 | D427Y | Gat | Tat | 11 | 11 | AY.5 | 0.000227 |
S | 427 | D427N | Gat | Aat | 11 | 11 | B.1 | 0.000101 |
S | 427 | D427N | Gat | Aat | 11 | 11 | Q.1 | 0.00139 |
S | 427 | D427D | gaT | gaC | 10 | 10 | AY.4 | 0.000016 |
S | 427 | D427Y | Gat | Tat | 10 | 10 | AY.4.2 | 0.000217 |
S | 427 | D427V | gAt | gTt | 10 | 10 | AY.44 | 0.000061 |
S | 427 | D427N | Gat | Aat | 9 | 9 | AY.43 | 0.00004 |
S | 427 | D427V | gAt | gTt | 9 | 9 | AY.43 | 0.00004 |
S | 427 | D427Y | Gat | Tat | 9 | 9 | AY.44 | 0.000055 |
S | 427 | D427Y | Gat | Tat | 9 | 9 | Q.3 | 0.001305 |
S | 427 | D427H | Gat | Cat | 8 | 8 | AY.120 | 0.000297 |
S | 427 | D427N | Gat | Aat | 8 | 8 | AY.44 | 0.000049 |
S | 427 | D427Y | Gat | Tat | 8 | 8 | AY.61 | 0.000838 |
S | 427 | D427D | gaT | gaC | 8 | 8 | B.1 | 0.000073 |
S | 427 | D427N | Gat | Aat | 8 | 8 | B.1.580 | 0.03252 |
S | 427 | D427A | gAt | gCt | 8 | 8 | B.1.617.2 | 0.00003 |
S | 427 | D427G | gAt | gGt | 7 | 7 | B.1.1.7 | 0.000006 |
S | 427 | D427N | Gat | Aat | 7 | 7 | P.1.1 | 0.002224 |
S | 427 | D427Y | Gat | Tat | 6 | 6 | AY.25 | 0.000036 |
S | 427 | D427Y | Gat | Tat | 6 | 6 | AY.9 | 0.000406 |
S | 427 | D427Y | Gat | Tat | 6 | 6 | AY.9.2 | 0.00022 |
S | 427 | D427D | gaT | gaC | 6 | 6 | AY.98 | 0.000474 |
S | 427 | D427N | Gat | Aat | 6 | 6 | B.1.1 | 0.000109 |
S | 427 | D427A | gAt | gCt | 6 | 6 | B.1.1.7 | 0.000005 |
S | 427 | D427Y | Gat | Tat | 6 | 6 | B.1.177 | 0.000079 |
S | 427 | D427D | gaT | gaC | 6 | 6 | B.1.177.81 | 0.001136 |
S | 427 | D427D | gaT | gaC | 6 | 6 | B.1.2 | 0.000053 |
S | 427 | D427Y | Gat | Tat | 6 | 6 | B.1.429 | 0.000141 |
S | 427 | D427G | gAt | gGt | 5 | 5 | AY.102 | 0.000133 |
S | 427 | D427V | gAt | gTt | 5 | 5 | AY.103 | 0.000031 |
S | 427 | D427H | Gat | Cat | 5 | 5 | AY.3 | 0.00005 |
S | 427 | D427D | gaT | gaC | 5 | 5 | AY.30 | 0.001979 |
S | 427 | D427D | gaT | gaC | 5 | 5 | B.1.429 | 0.000118 |
S | 427 | D427Y | Gat | Tat | 4 | 4 | A.23.1 | 0.002817 |
S | 427 | D427del2 | gAT | g-- | 3 | 4 | All | 0.000001 |
S | 427 | D427del2 | GAt | --t | 1 | 4 | All | 0 |
S | 427 | D427Y | Gat | Tat | 4 | 4 | AY.100 | 0.000184 |
S | 427 | D427N | Gat | Aat | 4 | 4 | AY.102 | 0.000106 |
S | 427 | D427V | gAt | gTt | 4 | 4 | AY.102 | 0.000106 |
S | 427 | D427D | gaT | gaC | 4 | 4 | AY.103 | 0.000025 |
S | 427 | D427Y | Gat | Tat | 4 | 4 | AY.120 | 0.000149 |
S | 427 | D427D | gaT | gaC | 4 | 4 | AY.20 | 0.000155 |
S | 427 | D427N | Gat | Aat | 4 | 4 | AY.39 | 0.000099 |
S | 427 | D427V | gAt | gTt | 4 | 4 | AY.39 | 0.000099 |
S | 427 | D427A | gAt | gCt | 4 | 4 | AY.4 | 0.000006 |
S | 427 | D427N | Gat | Aat | 4 | 4 | AY.4.2 | 0.000087 |
S | 427 | D427D | gaT | gaC | 4 | 4 | AY.43 | 0.000018 |
S | 427 | D427D | gaT | gaC | 4 | 4 | AY.44 | 0.000024 |
S | 427 | D427Y | Gat | Tat | 4 | 4 | AY.75.1 | 0.000721 |
S | 427 | D427Y | Gat | Tat | 4 | 4 | B.1 | 0.000037 |
S | 427 | D427D | gaT | gaC | 4 | 4 | B.1.1 | 0.000073 |
S | 427 | D427Y | Gat | Tat | 4 | 4 | B.1.1 | 0.000073 |
S | 427 | D427del | GAT | --- | 4 | 4 | B.1.1.7 | 0.000004 |
S | 427 | D427H | Gat | Cat | 4 | 4 | B.1.128 | 0.002541 |
S | 427 | D427G | gAt | gGt | 4 | 4 | B.1.2 | 0.000035 |
S | 427 | D427N | Gat | Aat | 4 | 4 | B.1.617.2 | 0.000015 |
S | 427 | D427Y | Gat | Tat | 4 | 4 | P.1.12 | 0.001936 |
S | 427 | D427N | Gat | Aat | 4 | 4 | P.1.14 | 0.000191 |
S | 427 | D427N | Gat | Aat | 3 | 3 | AY.25 | 0.000018 |
S | 427 | D427V | gAt | gTt | 3 | 3 | AY.25 | 0.000018 |
S | 427 | D427H | Gat | Cat | 3 | 3 | AY.26 | 0.000085 |
S | 427 | D427G | gAt | gGt | 3 | 3 | AY.29 | 0.000047 |
S | 427 | D427Y | Gat | Tat | 3 | 3 | AY.3 | 0.00003 |
S | 427 | D427H | Gat | Cat | 3 | 3 | AY.39 | 0.000074 |
S | 427 | D427A | gAt | gCt | 3 | 3 | AY.39.2 | 0.004622 |
S | 427 | D427A | gAt | gCt | 3 | 3 | AY.42 | 0.000121 |
S | 427 | D427G | gAt | gGt | 3 | 3 | AY.46 | 0.000312 |
S | 427 | D427V | gAt | gTt | 3 | 3 | AY.46.6 | 0.000217 |
S | 427 | D427V | gAt | gTt | 3 | 3 | AY.5 | 0.000062 |
S | 427 | D427N | Gat | Aat | 3 | 3 | B.1.1.518 | 0.018987 |
S | 427 | D427V | gAt | gTt | 3 | 3 | B.1.1.7 | 0.000003 |
S | 427 | D427A | gAt | gCt | 3 | 3 | B.1.258 | 0.0002 |
S | 427 | D427N | Gat | Aat | 3 | 3 | B.1.324 | 0.004815 |
S | 427 | D427Y | Gat | Tat | 3 | 3 | B.1.36.16 | 0.004274 |
S | 427 | D427Y | Gat | Tat | 3 | 3 | B.1.427 | 0.000151 |
S | 427 | D427D | gaT | gaC | 3 | 3 | B.1.509 | 0.002597 |
S | 427 | D427del | GAT | --- | 3 | 3 | B.1.617.2 | 0.000011 |
S | 427 | D427N | Gat | Aat | 3 | 3 | B.1.630 | 0.015707 |
S | 427 | D427del2 | gAT | g-- | 2 | 2 | 0.111111 | |
S | 427 | D427del1 | Gat | -at | 2 | 2 | All | 0 |
S | 427 | D427N | Gat | Aat | 2 | 2 | AY.103 | 0.000012 |
S | 427 | D427G | gAt | gGt | 2 | 2 | AY.120 | 0.000074 |
S | 427 | D427Y | Gat | Tat | 2 | 2 | AY.20 | 0.000078 |
S | 427 | D427Y | Gat | Tat | 2 | 2 | AY.23 | 0.000139 |
S | 427 | D427D | gaT | gaC | 2 | 2 | AY.25 | 0.000012 |
S | 427 | D427E | gaT | gaA | 2 | 2 | AY.29 | 0.000032 |
S | 427 | D427N | Gat | Aat | 2 | 2 | AY.3 | 0.00002 |
S | 427 | D427H | Gat | Cat | 2 | 2 | AY.33 | 0.000134 |
S | 427 | D427D | gaT | gaC | 2 | 2 | AY.37 | 0.000632 |
S | 427 | D427Y | Gat | Tat | 2 | 2 | AY.39 | 0.000049 |
S | 427 | D427Y | Gat | Tat | 2 | 2 | AY.39.1 | 0.000079 |
S | 427 | D427N | Gat | Aat | 2 | 2 | AY.4 | 0.000003 |
S | 427 | D427del | GAT | --- | 2 | 2 | AY.4 | 0.000003 |
S | 427 | D427V | gAt | gTt | 2 | 2 | AY.4.5 | 0.000215 |
S | 427 | D427Y | Gat | Tat | 2 | 2 | AY.45 | 0.000243 |
S | 427 | D427G | gAt | gGt | 2 | 2 | AY.47 | 0.000062 |
S | 427 | D427Y | Gat | Tat | 2 | 2 | AY.47 | 0.000062 |
S | 427 | D427Y | Gat | Tat | 2 | 2 | AY.6 | 0.000082 |
S | 427 | D427H | Gat | Cat | 2 | 2 | AY.61 | 0.00021 |
S | 427 | D427Y | Gat | Tat | 2 | 2 | AY.68 | 0.000547 |
S | 427 | D427Y | Gat | Tat | 2 | 2 | AY.70 | 0.000417 |
S | 427 | D427G | gAt | gGt | 2 | 2 | AY.75 | 0.000112 |
S | 427 | D427Y | Gat | Tat | 2 | 2 | AY.75 | 0.000112 |
S | 427 | D427A | gAt | gCt | 2 | 2 | AY.75.1 | 0.000361 |
S | 427 | D427A | gAt | gCt | 2 | 2 | AY.86 | 0.00166 |
S | 427 | D427Y | Gat | Tat | 2 | 2 | AY.9.1 | 0.000167 |
S | 427 | D427H | Gat | Cat | 2 | 2 | AY.9.2 | 0.000073 |
S | 427 | D427G | gAt | gGt | 2 | 2 | AY.99.1 | 0.003106 |
S | 427 | D427E | gaT | gaA | 1 | 2 | B.1 | 0.000009 |
S | 427 | D427E | gaT | gaG | 1 | 2 | B.1 | 0.000009 |
S | 427 | D427A | gAt | gCt | 2 | 2 | B.1.1.214 | 0.000111 |
S | 427 | D427V | gAt | gTt | 2 | 2 | B.1.1.284 | 0.000215 |
S | 427 | D427D | gaT | gaC | 2 | 2 | B.1.1.369 | 0.000892 |
S | 427 | D427G | gAt | gGt | 2 | 2 | B.1.177 | 0.000026 |
S | 427 | D427N | Gat | Aat | 2 | 2 | B.1.177 | 0.000026 |
S | 427 | D427H | Gat | Cat | 2 | 2 | B.1.177 | 0.000026 |
S | 427 | D427H | Gat | Cat | 2 | 2 | B.1.177.7 | 0.00033 |
S | 427 | D427H | Gat | Cat | 2 | 2 | B.1.2 | 0.000018 |
S | 427 | D427G | gAt | gGt | 2 | 2 | B.1.279 | 0.001027 |
S | 427 | D427D | gaT | gaC | 2 | 2 | B.1.320 | 0.002491 |
S | 427 | D427V | gAt | gTt | 2 | 2 | B.1.351 | 0.000059 |
S | 427 | D427D | gaT | gaC | 2 | 2 | B.1.36 | 0.000292 |
S | 427 | D427N | Gat | Aat | 2 | 2 | B.1.427 | 0.000101 |
S | 427 | D427Y | Gat | Tat | 2 | 2 | B.1.596 | 0.000174 |
S | 427 | D427G | gAt | gGt | 2 | 2 | B.1.637 | 0.000146 |
S | 427 | D427Y | Gat | Tat | 2 | 2 | B.1.637 | 0.000146 |
S | 427 | D427Y | Gat | Tat | 2 | 2 | P.1.10 | 0.000539 |
S | 427 | D427N | Gat | Aat | 2 | 2 | P.1.10.1 | 0.01626 |
S | 427 | D427H | Gat | Cat | 2 | 2 | P.1.17 | 0.000324 |
S | 427 | D427Y | Gat | Tat | 2 | 2 | P.1.7 | 0.000639 |
S | 427 | D427Y | Gat | Tat | 2 | 2 | R.1 | 0.00018 |
S | 427 | D427A | gAt | gCt | 1 | 1 | A.1 | 0.000282 |
S | 427 | D427D | gaT | gaC | 1 | 1 | A.2.4 | 0.003367 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | A.2.5.2 | 0.001572 |
S | 427 | D427A | gAt | gCt | 1 | 1 | A.21 | 0.00277 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | AB.1 | 0.008197 |
S | 427 | D427C | GAt | TGt | 1 | 1 | All | 0 |
S | 427 | D427K | GaT | AaG | 1 | 1 | All | 0 |
S | 427 | D427H | Gat | Cat | 1 | 1 | AY.101 | 0.00049 |
S | 427 | D427H | Gat | Cat | 1 | 1 | AY.102 | 0.000027 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | AY.104 | 0.001984 |
S | 427 | D427D | gaT | gaC | 1 | 1 | AY.105 | 0.000643 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | AY.106 | 0.000335 |
S | 427 | D427E | gaT | gaG | 1 | 1 | AY.109 | 0.00074 |
S | 427 | D427D | gaT | gaC | 1 | 1 | AY.117 | 0.000085 |
S | 427 | D427H | Gat | Cat | 1 | 1 | AY.117 | 0.000085 |
S | 427 | D427N | Gat | Aat | 1 | 1 | AY.118 | 0.000063 |
S | 427 | D427A | gAt | gCt | 1 | 1 | AY.119 | 0.000035 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | AY.119 | 0.000035 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | AY.120.1 | 0.000321 |
S | 427 | D427G | gAt | gGt | 1 | 1 | AY.120.1 | 0.000321 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | AY.121 | 0.000135 |
S | 427 | D427H | Gat | Cat | 1 | 1 | AY.13 | 0.000161 |
S | 427 | D427H | Gat | Cat | 1 | 1 | AY.16 | 0.00038 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | AY.16 | 0.00038 |
S | 427 | D427V | gAt | gTt | 1 | 1 | AY.20 | 0.000039 |
S | 427 | D427N | Gat | Aat | 1 | 1 | AY.20 | 0.000039 |
S | 427 | D427G | gAt | gGt | 1 | 1 | AY.20 | 0.000039 |
S | 427 | D427A | gAt | gCt | 1 | 1 | AY.20 | 0.000039 |
S | 427 | D427H | Gat | Cat | 1 | 1 | AY.23 | 0.00007 |
S | 427 | D427V | gAt | gTt | 1 | 1 | AY.23 | 0.00007 |
S | 427 | D427G | gAt | gGt | 1 | 1 | AY.23 | 0.00007 |
S | 427 | D427D | gaT | gaC | 1 | 1 | AY.23.1 | 0.000417 |
S | 427 | D427A | gAt | gCt | 1 | 1 | AY.24 | 0.000431 |
S | 427 | D427H | Gat | Cat | 1 | 1 | AY.24 | 0.000431 |
S | 427 | D427A | gAt | gCt | 1 | 1 | AY.26 | 0.000028 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | AY.26 | 0.000028 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | AY.29 | 0.000016 |
S | 427 | D427E | gaT | gaA | 1 | 1 | AY.30 | 0.000396 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | AY.33 | 0.000067 |
S | 427 | D427G | gAt | gGt | 1 | 1 | AY.34.1 | 0.00051 |
S | 427 | D427N | Gat | Aat | 1 | 1 | AY.34.1 | 0.00051 |
S | 427 | D427H | Gat | Cat | 1 | 1 | AY.34.1 | 0.00051 |
S | 427 | D427E | gaT | gaG | 1 | 1 | AY.39 | 0.000025 |
S | 427 | D427D | gaT | gaC | 1 | 1 | AY.39.1 | 0.00004 |
S | 427 | D427H | Gat | Cat | 1 | 1 | AY.4.2 | 0.000022 |
S | 427 | D427V | gAt | gTt | 1 | 1 | AY.4.2 | 0.000022 |
S | 427 | D427N | Gat | Aat | 1 | 1 | AY.4.5 | 0.000107 |
S | 427 | D427del | GAT | --- | 1 | 1 | AY.4.5 | 0.000107 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | AY.4.5 | 0.000107 |
S | 427 | D427H | Gat | Cat | 1 | 1 | AY.42 | 0.00004 |
S | 427 | D427del1 | Gat | -at | 1 | 1 | AY.43 | 0.000004 |
S | 427 | D427D | gaT | gaC | 1 | 1 | AY.45 | 0.000122 |
S | 427 | D427V | gAt | gTt | 1 | 1 | AY.45 | 0.000122 |
S | 427 | D427G | gAt | gGt | 1 | 1 | AY.45 | 0.000122 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | AY.46 | 0.000104 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | AY.46.3 | 0.000934 |
S | 427 | D427G | gAt | gGt | 1 | 1 | AY.46.5 | 0.000198 |
S | 427 | D427D | gaT | gaC | 1 | 1 | AY.46.6 | 0.000072 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | AY.5.4 | 0.000277 |
S | 427 | D427D | gaT | gaC | 1 | 1 | AY.54 | 0.000095 |
S | 427 | D427A | gAt | gCt | 1 | 1 | AY.54 | 0.000095 |
S | 427 | D427A | gAt | gCt | 1 | 1 | AY.55 | 0.000917 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | AY.59 | 0.00053 |
S | 427 | D427G | gAt | gGt | 1 | 1 | AY.59 | 0.00053 |
S | 427 | D427D | gaT | gaC | 1 | 1 | AY.59 | 0.00053 |
S | 427 | D427H | Gat | Cat | 1 | 1 | AY.6 | 0.000041 |
S | 427 | D427A | gAt | gCt | 1 | 1 | AY.61 | 0.000105 |
S | 427 | D427V | gAt | gTt | 1 | 1 | AY.62 | 0.000436 |
S | 427 | D427G | gAt | gGt | 1 | 1 | AY.68 | 0.000274 |
S | 427 | D427G | gAt | gGt | 1 | 1 | AY.7 | 0.000196 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | AY.7.1 | 0.000113 |
S | 427 | D427N | Gat | Aat | 1 | 1 | AY.74 | 0.000116 |
S | 427 | D427A | gAt | gCt | 1 | 1 | AY.75 | 0.000056 |
S | 427 | D427K | GaT | AaG | 1 | 1 | AY.75 | 0.000056 |
S | 427 | D427H | Gat | Cat | 1 | 1 | AY.75 | 0.000056 |
S | 427 | D427G | gAt | gGt | 1 | 1 | AY.75.1 | 0.00018 |
S | 427 | D427H | Gat | Cat | 1 | 1 | AY.78 | 0.001541 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | AY.83 | 0.001724 |
S | 427 | D427E | gaT | gaA | 1 | 1 | AY.85 | 0.000427 |
S | 427 | D427A | gAt | gCt | 1 | 1 | AY.85 | 0.000427 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | AY.88 | 0.000884 |
S | 427 | D427N | Gat | Aat | 1 | 1 | AY.9.2 | 0.000037 |
S | 427 | D427G | gAt | gGt | 1 | 1 | AY.92 | 0.000287 |
S | 427 | D427del | GAT | --- | 1 | 1 | AY.94 | 0.000443 |
S | 427 | D427D | gaT | gaC | 1 | 1 | AY.95 | 0.000761 |
S | 427 | D427V | gAt | gTt | 1 | 1 | AY.98 | 0.000079 |
S | 427 | D427N | Gat | Aat | 1 | 1 | AY.98.1 | 0.000048 |
S | 427 | D427D | gaT | gaC | 1 | 1 | AY.98.1 | 0.000048 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | AY.98.1 | 0.000048 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | AY.99.2 | 0.000092 |
S | 427 | D427del | GAT | --- | 1 | 1 | B | 0.000128 |
S | 427 | D427V | gAt | gTt | 1 | 1 | B.1 | 0.000009 |
S | 427 | D427del2 | gAT | g-- | 1 | 1 | B.1 | 0.000009 |
S | 427 | D427H | Gat | Cat | 1 | 1 | B.1 | 0.000009 |
S | 427 | D427G | gAt | gGt | 1 | 1 | B.1.1 | 0.000018 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | B.1.1.10 | 0.001115 |
S | 427 | D427H | Gat | Cat | 1 | 1 | B.1.1.222 | 0.000204 |
S | 427 | D427del | GAT | --- | 1 | 1 | B.1.1.236 | 0.006897 |
S | 427 | D427D | gaT | gaC | 1 | 1 | B.1.1.25 | 0.000569 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | B.1.1.279 | 0.001121 |
S | 427 | D427A | gAt | gCt | 1 | 1 | B.1.1.306 | 0.000438 |
S | 427 | D427V | gAt | gTt | 1 | 1 | B.1.1.306 | 0.000438 |
S | 427 | D427E | gaT | gaG | 1 | 1 | B.1.1.306 | 0.000438 |
S | 427 | D427N | Gat | Aat | 1 | 1 | B.1.1.326 | 0.001761 |
S | 427 | D427G | gAt | gGt | 1 | 1 | B.1.1.33 | 0.000421 |
S | 427 | D427A | gAt | gCt | 1 | 1 | B.1.1.351 | 0.002793 |
S | 427 | D427N | Gat | Aat | 1 | 1 | B.1.1.368 | 0.003086 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | B.1.1.376 | 0.005952 |
S | 427 | D427N | Gat | Aat | 1 | 1 | B.1.1.448 | 0.002033 |
S | 427 | D427V | gAt | gTt | 1 | 1 | B.1.1.50 | 0.000679 |
S | 427 | D427V | gAt | gTt | 1 | 1 | B.1.1.518 | 0.006329 |
S | 427 | D427H | Gat | Cat | 1 | 1 | B.1.1.519 | 0.00004 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | B.1.1.519 | 0.00004 |
S | 427 | D427N | Gat | Aat | 1 | 1 | B.1.1.528 | 0.004808 |
S | 427 | D427E | gaT | gaA | 1 | 1 | B.1.1.7 | 0.000001 |
S | 427 | D427H | Gat | Cat | 1 | 1 | B.1.1.70 | 0.000341 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | B.1.111 | 0.001175 |
S | 427 | D427V | gAt | gTt | 1 | 1 | B.1.177 | 0.000013 |
S | 427 | D427E | gaT | gaA | 1 | 1 | B.1.177 | 0.000013 |
S | 427 | D427del2 | GAt | --t | 1 | 1 | B.1.177.11 | 0.001698 |
S | 427 | D427H | Gat | Cat | 1 | 1 | B.1.177.12 | 0.000152 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | B.1.177.12 | 0.000152 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | B.1.177.17 | 0.000821 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | B.1.177.35 | 0.000691 |
S | 427 | D427G | gAt | gGt | 1 | 1 | B.1.177.4 | 0.000211 |
S | 427 | D427del | GAT | --- | 1 | 1 | B.1.177.51 | 0.004566 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | B.1.177.57 | 0.000281 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | B.1.177.58 | 0.001332 |
S | 427 | D427C | GAt | TGt | 1 | 1 | B.1.177.7 | 0.000165 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | B.1.177.7 | 0.000165 |
S | 427 | D427D | gaT | gaC | 1 | 1 | B.1.177.8 | 0.000752 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | B.1.177.81 | 0.000189 |
S | 427 | D427V | gAt | gTt | 1 | 1 | B.1.2 | 0.000009 |
S | 427 | D427del | GAT | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 427 | D427del1 | Gat | -at | 1 | 1 | B.1.2 | 0.000009 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | B.1.201 | 0.005682 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | B.1.234 | 0.000132 |
S | 427 | D427A | gAt | gCt | 1 | 1 | B.1.243 | 0.00007 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | B.1.243 | 0.00007 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | B.1.258 | 0.000067 |
S | 427 | D427N | GaT | AaC | 1 | 1 | B.1.258 | 0.000067 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | B.1.265 | 0.001271 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | B.1.349 | 0.000715 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | B.1.351 | 0.00003 |
S | 427 | D427del | GAT | --- | 1 | 1 | B.1.351.2 | 0.000303 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | B.1.351.2 | 0.000303 |
S | 427 | D427H | Gat | Cat | 1 | 1 | B.1.36.29 | 0.000517 |
S | 427 | D427D | gaT | gaC | 1 | 1 | B.1.36.39 | 0.002217 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | B.1.371 | 0.001122 |
S | 427 | D427D | gaT | gaC | 1 | 1 | B.1.468 | 0.005714 |
S | 427 | D427H | Gat | Cat | 1 | 1 | B.1.526 | 0.000024 |
S | 427 | D427N | Gat | Aat | 1 | 1 | B.1.526 | 0.000024 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | B.1.544 | 0.006024 |
S | 427 | D427H | Gat | Cat | 1 | 1 | B.1.567 | 0.003333 |
S | 427 | D427del | GAT | --- | 1 | 1 | B.1.568 | 0.001111 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | B.1.576 | 0.000907 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | B.1.582 | 0.000491 |
S | 427 | D427H | Gat | Cat | 1 | 1 | B.1.620 | 0.000946 |
S | 427 | D427del | GAT | --- | 1 | 1 | B.1.620 | 0.000946 |
S | 427 | D427N | Gat | Aat | 1 | 1 | B.1.621 | 0.000089 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | B.1.628 | 0.000352 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | B.1.9.4 | 0.006135 |
S | 427 | D427G | gAt | gGt | 1 | 1 | C.35 | 0.000774 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | C.37 | 0.000116 |
S | 427 | D427V | gAt | gTt | 1 | 1 | P.1 | 0.000016 |
S | 427 | D427D | gaT | gaC | 1 | 1 | P.1 | 0.000016 |
S | 427 | D427A | gAt | gCt | 1 | 1 | P.1 | 0.000016 |
S | 427 | D427A | gAt | gCt | 1 | 1 | P.1.1 | 0.000318 |
S | 427 | D427E | gaT | gaG | 1 | 1 | P.1.1 | 0.000318 |
S | 427 | D427V | gAt | gTt | 1 | 1 | P.1.1 | 0.000318 |
S | 427 | D427A | gAt | gCt | 1 | 1 | P.1.14 | 0.000048 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | P.1.14 | 0.000048 |
S | 427 | D427D | gaT | gaC | 1 | 1 | P.1.14 | 0.000048 |
S | 427 | D427N | Gat | Aat | 1 | 1 | P.1.15 | 0.000232 |
S | 427 | D427N | Gat | Aat | 1 | 1 | P.1.16 | 0.000374 |
S | 427 | D427Y | Gat | Tat | 1 | 1 | P.1.17 | 0.000162 |
S | 427 | D427H | Gat | Cat | 1 | 1 | P.1.2 | 0.001156 |
S | 427 | D427del | GAT | --- | 1 | 1 | Q.8 | 0.000165 |
S | 427 | D427H | Gat | Cat | 1 | 1 | Q.8 | 0.000165 |
S | 427 | D427H | Gat | Cat | 1 | 1 | R.1 | 0.00009 |
S | 427 | D427V | gAt | gTt | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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