CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 417

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S417K417TnonsynaAgaCg1109871109080.99928822811-22813
S417K417TnonsynaAGaCA110987690.00062169422811-22813
S417K417TnonsynaAGaCT110987100.000090100622811-22813
S417K417NnonsynaaGaaT45693456710.99951922811-22813
S417K417NnonsynaaGaaC45693220.00048147422811-22813
S417K417RnonsynaAgaGg2802760.98571422811-22813
S417K417RnonsynAAgCGg28020.0071428622811-22813
S417K417RnonsynAAGCGA28020.0071428622811-22813
S417K417KsynaaGaaA181181122811-22813
S417K417EnonsynAagGag3434122811-22813
S417K417MnonsynaAgaTg2626122811-22813
S417K417deldelAAG---1717122811-22813
S417K417QnonsynAagCag12100.83333322811-22813
S417K417QnonsynAaGCaA1220.16666722811-22813
S417K417AnonsynAAgGCg1010122811-22813
S417K417del1delaaGaa-33122811-22813
S417K417SnonsynaAGaGT22122811-22813
S417K417XnonsynAagTag11122811-22813
S417K417DnonsynAaGGaT11122811-22813
S417K417VnonsynAAGGTT11122811-22813
S417K417InonsynaAGaTT11122811-22813

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S417K417TaAgaCg110908110987All0.021212
S417K417TaAGaCA69110987All0.000013
S417K417TaAGaCT10110987All0.000002
S417K417TaAgaCg6134061350P.10.966349
S417K417TaAGaCT761350P.10.00011
S417K417TaAGaCA361350P.10.000047
S417K417NaaGaaT4567145693All0.008735
S417K417NaaGaaC2245693All0.000004
S417K417NaaGaaT3142431425B.1.3510.934126
S417K417NaaGaaC131425B.1.3510.00003
S417K417TaAgaCg2010620108P.1.140.96109
S417K417TaAGaCA220108P.1.140.000096
S417K417TaAgaCg58665928P.1.170.948884
S417K417TaAGaCA615928P.1.170.009867
S417K417TaAGaCT15928P.1.170.000162
S417K417TaAgaCg40744074P.1.150.946561
S417K417TaAgaCg36533653P.1.100.984371
S417K417NaaGaaT32793279B.1.351.20.992133
S417K417TaAgaCg30663066P.1.70.978927
S417K417TaAgaCg29212924P.1.10.927891
S417K417TaAGaCA32924P.1.10.000953
S417K417NaaGaaT28082808AY.21
S417K417NaaGaaT25272527AY.11
S417K417TaAgaCg25052505P.1.160.937149
S417K417TaAgaCg18801880P.1.120.909971
S417K417NaaGaaT16621662B.1.351.50.996403
S417K417TaAgaCg11281128P.1.17.10.986877
S417K417NaaGaaT11241124B.1.351.30.985101
S417K417TaAgaCg10791079P.1.130.969452
S417K417TaAgaCg10241024P.1.41
S417K417TaAgaCg828828P.1.20.957225
S417K417NaaGaaT756756B.1.6210.06692
S417K417TaAgaCg514514P.1.61
S417K417NaaGaaT360362B.1.617.20.001356
S417K417NaaGaaC2362B.1.617.20.000008
S417K417NaaGaaT341341B.10.003123
S417K417RaAgaGg276280All0.000053
S417K417RAAgCGg2280All0
S417K417RAAGCGA2280All0
S417K417RaAgaGg212212B.1.1.70.00019
S417K417TaAgaCg209209P.1.81
S417K417TaAgaCg198198P.1.90.951923
S417K417KaaGaaA181181All0.000035
S417K417NaaGaaT150158B.1.1.70.000134
S417K417NaaGaaC8158B.1.1.70.000007
S417K417NaaGaaT128128B.1.5540.563877
S417K417TaAgaCg123123P.1.10.11
S417K417NaaGaaT105105AY.1030.000652
S417K417NaaGaaT9798AY.250.000583
S417K417NaaGaaC198AY.250.000006
S417K417TaAgaCg9898P.1.111
S417K417KaaGaaA9494B.1.5540.414097
S417K417NaaGaaT7979AY.440.000481
S417K417TaAgaCg5353B.1.617.20.0002
S417K417NaaGaaT5151AY.430.000226
S417K417NaaGaaT5151B.1.10.000925
S417K417TaAgaCg4040B.10.000366
S417K417TaAgaCg3838B.1.10.000689
S417K417NaaGaaT3636AY.690.00672
S417K417EAagGag3434All0.000007
S417K417NaaGaaT3434B.1.1700.146552
S417K417TaAgaCg2929P.1.31
S417K417NaaGaaT2828AY.560.044944
S417K417KaaGaaA2727B.1.1.70.000024
S417K417MaAgaTg2626All0.000005
S417K417NaaGaaT2525B.1.351.10.961538
S417K417TaAgaCg2424B.1.1.70.000021
S417K417NaaGaaT2222AY.40.000034
S417K417NaaGaaT2222AY.710.010451
S417K417TaAgaCg1919A.2.50.009481
S417K417NaaGaaT1919AY.1170.001606
S417K417NaaGaaT1919AY.620.008279
S417K417TaAgaCg1919C.370.002205
S417K417delAAG---1717All0.000003
S417K417NaaGaaT1616AY.1200.000595
S417K417NaaGaaT1616B0.002045
S417K417NaaGaaT1515AY.380.007489
S417K417NaaGaaT1515AY.470.000467
S417K417NaaGaaT1515AY.50.00031
S417K417NaaGaaT1515B.1.4290.000353
S417K417NaaGaaT1414AY.260.000396
S417K417TaAgaCg1414P.1.10.20.583333
S417K417NaaGaaT1313AY.390.000321
S417K417NaaGaaT1313B.1.6200.012299
S417K417TaAgaCg1313P.1.51
S417K417QAagCag1012All0.000002
S417K417QAaGCaA212All0
S417K417NaaGaaT1112AY.30.000109
S417K417NaaGaaC112AY.30.00001
S417K417NaaGaaT1111B.1.177.730.006229
S417K417NaaGaaT1111B.1.4700.015449
S417K417AAAgGCg1010All0.000002
S417K417NaaGaaT1010AY.750.00056
S417K417NaaGaaT1010AY.820.013569
S417K417NaaGaaT1010B.1.6360.067114
S417K417NaaGaaT99AY.200.00035
S417K417EAagGag99AY.390.000222
S417K417KaaGaaA99AY.40.000014
S417K417NaaGaaT89B.1.20.00007
S417K417NaaGaaC19B.1.20.000009
S417K417KaaGaaA99B.1.4270.000454
S417K417RaAgaGg88AY.250.000048
S417K417NaaGaaT88B.1.2580.000532
S417K417MaAgaTg77AY.250.000042
S417K417NaaGaaT77AY.330.000467
S417K417NaaGaaT77B.1.5950.001827
S417K417AAAgGCg77P.10.00011
S417K417RaAgaGg260.111111
S417K417RAAgCGg260.111111
S417K417RAAGCGA260.111111
S417K417RaAgaGg66AY.1020.000159
S417K417NaaGaaT66AY.1190.000212
S417K417NaaGaaT66AY.230.000418
S417K417NaaGaaT66AY.370.001896
S417K417EAagGag66AY.40.000009
S417K417NaaGaaT66AY.650.003198
S417K417NaaGaaT66B.1.1.280.001867
S417K417NaaGaaT66B.1.1770.000079
S417K417NaaGaaT66B.1.258.170.000624
S417K417NaaGaaT55AY.290.000079
S417K417TaAgaCg55AY.40.000008
S417K417NaaGaaT55AY.850.002136
S417K417NaaGaaT55B.1.1.3890.030303
S417K417KaaGaaA55B.1.1.580.026882
S417K417delAAG---55B.1.1.70.000004
S417K417NaaGaaT55B.1.6090.002397
S417K417NaaGaaT45B.1.6370.000292
S417K417NaaGaaC15B.1.6370.000073
S417K417QAaGCaA240.111111
S417K417QAagCag240.111111
S417K417NaaGaaT44AY.1020.000106
S417K417NaaGaaT44AY.1180.000251
S417K417NaaGaaT44AY.160.001519
S417K417NaaGaaT44AY.270.000259
S417K417RaAgaGg44AY.290.000063
S417K417RaAgaGg44AY.40.000006
S417K417NaaGaaT44AY.4.50.00043
S417K417RaAgaGg44AY.440.000024
S417K417NaaGaaT44AY.5.30.00135
S417K417NaaGaaT44AY.520.003257
S417K417NaaGaaT44AY.590.002119
S417K417NaaGaaT44AY.610.000419
S417K417NaaGaaT44AY.880.003537
S417K417NaaGaaT44AY.920.001149
S417K417NaaGaaT44AY.980.000316
S417K417RaAgaGg44B.1.10.000073
S417K417NaaGaaC44B.1.1.3290.015385
S417K417NaaGaaT44B.1.1.4320.005063
S417K417MaAgaTg44B.1.1.70.000004
S417K417EAagGag44B.1.1.70.000004
S417K417KaaGaaA44B.1.617.20.000015
S417K417EAagGag44B.1.617.20.000015
S417K417QAagCag44B.1.6210.000354
S417K417TaAgaCg44C.37.10.010471
S417K417MaAgaTg44P.10.000063
S417K417TaAgaCg44P.20.000747
S417K417NaaGaaT44P.30.00638
S417K417NaaGaaT44P.50.054795
S417K417NaaGaaT33A0.001161
S417K417del1aaGaa-33All0.000001
S417K417NaaGaaT33AY.1050.001929
S417K417NaaGaaT33AY.1060.001005
S417K417NaaGaaT33AY.1130.000427
S417K417NaaGaaT33AY.1160.00086
S417K417KaaGaaA33AY.1190.000106
S417K417EAagGag33AY.1190.000106
S417K417NaaGaaT33AY.190.003421
S417K417TaAgaCg33AY.230.000209
S417K417RaAgaGg33AY.260.000085
S417K417NaaGaaT33AY.340.000291
S417K417MaAgaTg33AY.40.000005
S417K417QAagCag33AY.440.000018
S417K417NaaGaaT33AY.450.000365
S417K417NaaGaaT33AY.540.000286
S417K417NaaGaaT33AY.840.001312
S417K417RaAgaGg33AY.9.20.00011
S417K417RaAgaGg33AY.940.001328
S417K417NaaGaaT33AY.990.003148
S417K417TaAgaCg33B.1.1.280.000934
S417K417NaaGaaT33B.1.1.3060.001315
S417K417NaaGaaT33B.1.1.3720.002066
S417K417KaaGaaA33B.1.20.000026
S417K417NaaGaaT23B.1.5260.000047
S417K417NaaGaaC13B.1.5260.000024
S417K417TaAgaCg33B.1.6210.000266
S417K417AAAgGCg33P.1.150.000697
S417K417SaAGaGT22All0
S417K417NaaGaaT22AU.20.004843
S417K417RaAgaGg22AY.1030.000012
S417K417NaaGaaT22AY.120.2.10.000997
S417K417NaaGaaT22AY.1210.000271
S417K417NaaGaaT22AY.130.000322
S417K417EAagGag22AY.250.000012
S417K417TaAgaCg22AY.250.000012
S417K417RaAgaGg22AY.340.000194
S417K417delAAG---22AY.40.000003
S417K417NaaGaaT22AY.420.00008
S417K417NaaGaaT22AY.46.40.000329
S417K417NaaGaaT22AY.5.40.000553
S417K417NaaGaaT22AY.600.001876
S417K417NaaGaaT22AY.630.000774
S417K417NaaGaaT22AY.670.000929
S417K417NaaGaaT22AY.70.000392
S417K417NaaGaaT22AY.730.001331
S417K417TaAgaCg22AY.75.10.000361
S417K417NaaGaaT22AY.790.002421
S417K417NaaGaaT22AY.860.00166
S417K417delAAG---22AY.90.000135
S417K417NaaGaaT22AY.940.000885
S417K417NaaGaaT22AY.99.20.000184
S417K417NaaGaaT22B.1.1.2160.001781
S417K417NaaGaaT22B.1.1.2220.000408
S417K417NaaGaaC12B.1.1.2690.001353
S417K417NaaGaaT12B.1.1.2690.001353
S417K417KaaGaaA22B.1.1.3060.000877
S417K417NaaGaaT22B.1.1.3750.02381
S417K417NaaGaaT22B.1.177.520.003515
S417K417NaaGaaT22B.1.177.860.000367
S417K417NaaGaaT22B.1.2210.000142
S417K417TaAGaCT22B.1.3510.000059
S417K417NaaGaaT22B.1.3670.001585
S417K417KaaGaaA22B.1.4740.003802
S417K417NaaGaaT22B.1.5960.000174
S417K417KaaGaaA22B.1.6090.000959
S417K417NaaGaaT22B.1.6230.001073
S417K417NaaGaaT22B.1.6260.011429
S417K417NaaGaaT22B.1.6340.006849
S417K417KaaGaaA22C.360.001821
S417K417NaaGaaT22Q.30.00029
S417K417RaAgaGg22Q.80.00033
S417K417KaaGaaA110.055556
S417K417KaaGaaA11A.2.5.10.004808
S417K417KaaGaaA11AE.80.000489
S417K417XAagTag11All0
S417K417IaAGaTT11All0
S417K417DAaGGaT11All0
S417K417VAAGGTT11All0
S417K417NaaGaaT11AT.10.005128
S417K417NaaGaaT11AY.100.00053
S417K417KaaGaaA11AY.1000.000046
S417K417KaaGaaA11AY.1010.00049
S417K417TaAgaCg11AY.1020.000027
S417K417NaaGaaT11AY.1080.001103
S417K417NaaGaaT11AY.1100.000113
S417K417NaaGaaT11AY.1140.000231
S417K417TaAgaCg11AY.1190.000035
S417K417NaaGaaT11AY.120.000316
S417K417NaaGaaT11AY.120.10.000321
S417K417RaAgaGg11AY.16.10.00047
S417K417RaAgaGg11AY.200.000039
S417K417NaaGaaT11AY.210.001898
S417K417NaaGaaT11AY.220.002092
S417K417RaAgaGg11AY.230.00007
S417K417KaaGaaA11AY.260.000028
S417K417KaaGaaA11AY.270.000065
S417K417EAagGag11AY.270.000065
S417K417NaaGaaT11AY.280.00189
S417K417KaaGaaA11AY.30.00001
S417K417KaaGaaA11AY.320.000532
S417K417NaaGaaT11AY.320.000532
S417K417RaAgaGg11AY.370.000316
S417K417RaAgaGg11AY.380.000499
S417K417TaAgaCg11AY.390.000025
S417K417NaaGaaT11AY.39.10.00004
S417K417IaAGaTT11AY.40.000002
S417K417QAagCag11AY.40.000002
S417K417RaAgaGg11AY.4.20.000022
S417K417NaaGaaT11AY.4.30.000842
S417K417delAAG---11AY.4.50.000107
S417K417NaaGaaT11AY.400.000964
S417K417NaaGaaT11AY.410.000294
S417K417MaAgaTg11AY.430.000004
S417K417TaAgaCg11AY.430.000004
S417K417delAAG---11AY.430.000004
S417K417KaaGaaA11AY.430.000004
S417K417TaAgaCg11AY.440.000006
S417K417EAagGag11AY.440.000006
S417K417TaAgaCg11AY.450.000122
S417K417NaaGaaT11AY.460.000104
S417K417EAagGag11AY.50.000021
S417K417NaaGaaT11AY.510.000909
S417K417NaaGaaT11AY.530.000288
S417K417NaaGaaT11AY.550.000917
S417K417del1aaGaa-11AY.560.001605
S417K417NaaGaaT11AY.7.10.000113
S417K417RaAgaGg11AY.740.000116
S417K417RaAgaGg11AY.75.10.00018
S417K417NaaGaaT11AY.75.10.00018
S417K417NaaGaaC11AY.770.001127
S417K417NaaGaaT11AY.780.001541
S417K417NaaGaaT11AY.870.000833
S417K417EAagGag11AY.90.000068
S417K417NaaGaaT11AY.90.000068
S417K417del1aaGaa-11AY.9.20.000037
S417K417NaaGaaT11AY.9.20.000037
S417K417NaaGaaT11AY.910.00073
S417K417NaaGaaT11AY.98.10.000048
S417K417RaAgaGg11B.10.000009
S417K417MaAgaTg11B.10.000009
S417K417KaaGaaA11B.10.000009
S417K417EAagGag11B.1.10.000018
S417K417KaaGaaA11B.1.10.000018
S417K417NaaGaaT11B.1.1.10.000327
S417K417NaaGaaT11B.1.1.1190.034483
S417K417NaaGaaT11B.1.1.2030.016949
S417K417MaAgaTg11B.1.1.2220.000204
S417K417delAAG---11B.1.1.2360.006897
S417K417TaAgaCg11B.1.1.2360.006897
S417K417NaaGaaT11B.1.1.250.000569
S417K417NaaGaaT11B.1.1.2770.000759
S417K417KaaGaaA11B.1.1.3180.000302
S417K417NaaGaaT11B.1.1.3180.000302
S417K417NaaGaaT11B.1.1.3540.004386
S417K417TaAgaCg11B.1.1.3720.000689
S417K417KaaGaaA11B.1.1.390.00051
S417K417NaaGaaT11B.1.1.4090.002833
S417K417TaAgaCg11B.1.1.4090.002833
S417K417NaaGaaT11B.1.1.4220.045455
S417K417NaaGaaT11B.1.1.440.00241
S417K417NaaGaaT11B.1.1.5190.00004
S417K417NaaGaaT11B.1.1.5250.005464
S417K417TaAgaCg11B.1.1.5280.004808
S417K417XAagTag11B.1.1770.000013
S417K417TaAgaCg11B.1.1770.000013
S417K417RaAgaGg11B.1.1770.000013
S417K417NaaGaaT11B.1.177.310.011494
S417K417NaaGaaT11B.1.177.70.000165
S417K417TaAgaCg11B.1.177.730.000566
S417K417KaaGaaA11B.1.177.790.002342
S417K417NaaGaaT11B.1.1790.003759
S417K417delAAG---11B.1.20.000009
S417K417EAagGag11B.1.20.000009
S417K417MaAgaTg11B.1.20.000009
S417K417NaaGaaT11B.1.214.30.007143
S417K417TaAgaCg11B.1.2210.000071
S417K417RaAgaGg11B.1.2340.000132
S417K417KaaGaaA11B.1.2410.000812
S417K417VAAGGTT11B.1.2580.000067
S417K417KaaGaaA11B.1.258.110.000396
S417K417NaaGaaT11B.1.2790.000514
S417K417NaaGaaT11B.1.3110.000275
S417K417NaaGaaT11B.1.3200.001245
S417K417TaAgaCg11B.1.3490.000715
S417K417DAaGGaT11B.1.3510.00003
S417K417SaAGaGT11B.1.3510.00003
S417K417SaAGaGT11B.1.351.20.000303
S417K417NaaGaaT11B.1.36.290.000517
S417K417NaaGaaT11B.1.3750.00082
S417K417NaaGaaT11B.1.3990.001934
S417K417RaAgaGg11B.1.4160.001269
S417K417NaaGaaT11B.1.4270.00005
S417K417RaAgaGg11B.1.4290.000024
S417K417KaaGaaA11B.1.4290.000024
S417K417NaaGaaT11B.1.4410.009615
S417K417NaaGaaT11B.1.5240.001406
S417K417NaaGaaT11B.1.5250.000113
S417K417KaaGaaA11B.1.5260.000024
S417K417TaAgaCg11B.1.5260.000024
S417K417delAAG---11B.1.5680.001111
S417K417TaAgaCg11B.1.5960.000087
S417K417NaaGaaT11B.1.5990.00365
S417K417NaaGaaT11B.1.6010.030303
S417K417delAAG---11B.1.617.20.000004
S417K417del1aaGaa-11B.1.617.20.000004
S417K417RaAgaGg11B.1.617.20.000004
S417K417NaaGaaT11B.1.617.30.002985
S417K417NaaGaaT11B.1.6190.000871
S417K417delAAG---11B.1.6200.000946
S417K417NaaGaaT11B.1.621.10.000506
S417K417TaAgaCg11B.1.6230.000536
S417K417RaAgaGg11B.1.6230.000536
S417K417TaAgaCg11B.1.6270.00202
S417K417NaaGaaT11B.1.780.008547
S417K417NaaGaaT11B.270.015385
S417K417NaaGaaT11B.60.00091
S417K417NaaGaaT11C.160.00106
S417K417TaAgaCg11C.350.000774
S417K417NaaGaaT11C.36.30.000567
S417K417TaAgaCg11C.36.30.000567
S417K417NaaGaaT11C.370.000116
S417K417RaAgaGg11C.37.10.002618
S417K417NaaGaaT11C.390.018868
S417K417MaAgaTg11P.1.140.000048
S417K417MaAgaTg11P.1.150.000232
S417K417MaAgaTg11P.1.170.000162
S417K417MaAgaTg11P.1.20.001156
S417K417RaAgaGg11Q.10.000126
S417K417TaAgaCg11Q.10.000126
S417K417delAAG---11Q.80.000165
S417K417NaaGaaT11R.10.00009