CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 414

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S414Q414KnonsynCaaAaa24272427122802-22804
S414Q414RnonsyncAacGa12111211122802-22804
S414Q414HnonsyncaAcaC8057720.95900622802-22804
S414Q414HnonsyncaAcaT805330.040993822802-22804
S414Q414QsyncaAcaG236236122802-22804
S414Q414LnonsyncAacTa96940.97916722802-22804
S414Q414LnonsynCAaTTa9620.020833322802-22804
S414Q414XnonsynCaaTaa54530.98148122802-22804
S414Q414XnonsynCAaTGa5410.018518522802-22804
S414Q414deldelCAA---1919122802-22804
S414Q414del1delcAac-a1111122802-22804
S414Q414PnonsyncAacCa99122802-22804
S414Q414del2delcAAc--320.66666722802-22804
S414Q414del2delCAa--a310.33333322802-22804
S414Q414EnonsynCaaGaa22122802-22804
S414Q414GnonsynCAAGGC11122802-22804
S414Q414AnonsynCAaGCa11122802-22804

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S414Q414KCaaAaa24272427All0.000464
S414Q414KCaaAaa16111611B.1.214.20.965827
S414Q414RcAacGa12111211All0.000232
S414Q414HcaAcaC772805All0.000148
S414Q414HcaAcaT33805All0.000006
S414Q414HcaAcaC717718AY.40.001116
S414Q414HcaAcaT1718AY.40.000002
S414Q414RcAacGa560560N.50.989399
S414Q414QcaAcaG236236All0.000045
S414Q414RcAacGa199199AY.290.003139
S414Q414RcAacGa189189AY.30.00188
S414Q414QcaAcaG130130B.1.1.70.000116
S414Q414KCaaAaa100100B.1.617.20.000377
S414Q414LcAacTa9496All0.000018
S414Q414LCAaTTa296All0
S414Q414KCaaAaa8888AY.40.000137
S414Q414KCaaAaa8181AY.1030.000503
S414Q414KCaaAaa7676B.1.1.70.000068
S414Q414XCaaTaa5354All0.00001
S414Q414XCAaTGa154All0
S414Q414KCaaAaa4343B.10.000394
S414Q414KCaaAaa3838AY.430.000168
S414Q414RcAacGa3636B.1.10.000653
S414Q414KCaaAaa3030AY.4.20.000651
S414Q414HcaAcaC2429B.1.617.20.00009
S414Q414HcaAcaT529B.1.617.20.000019
S414Q414KCaaAaa2828AY.250.000168
S414Q414KCaaAaa2525AY.30.000249
S414Q414KCaaAaa2525AY.390.000618
S414Q414LcAacTa2525AY.40.000039
S414Q414KCaaAaa2424AY.200.000933
S414Q414KCaaAaa2323B.1.20.000203
S414Q414QcaAcaG2323B.1.4040.029948
S414Q414HcaAcaC1321AY.250.000078
S414Q414HcaAcaT821AY.250.000048
S414Q414RcAacGa2121AY.880.018568
S414Q414RcAacGa2121B.10.000192
S414Q414delCAA---1919All0.000004
S414Q414RcAacGa1818AY.230.001255
S414Q414KCaaAaa1818B.1.1770.000237
S414Q414KCaaAaa1818B.1.214.30.128571
S414Q414RcAacGa1818B.1.617.20.000068
S414Q414QcaAcaG1717B.1.10.000308
S414Q414KCaaAaa1616C.36.30.009075
S414Q414LcAacTa1414AY.1110.002564
S414Q414LcAacTa1414AY.30.000139
S414Q414KCaaAaa1414AY.470.000435
S414Q414RcAacGa1414B.1.1.1280.099291
S414Q414KCaaAaa1414B.1.5960.00122
S414Q414del1cAac-a1111All0.000002
S414Q414RcAacGa1111B.1.1.330.00463
S414Q414KCaaAaa1111B.1.2100.023454
S414Q414RcAacGa1010AY.40.000016
S414Q414XCaaTaa1010B.10.000092
S414Q414PcAacCa99All0.000002
S414Q414KCaaAaa99B.1.5260.000212
S414Q414QcaAcaG88AY.1000.000368
S414Q414RcAacGa88AY.4.20.000174
S414Q414KCaaAaa77AY.440.000043
S414Q414KCaaAaa77AY.460.000729
S414Q414HcaAcaC77AY.98.10.000339
S414Q414KCaaAaa77B.1.1.3110.002507
S414Q414RcAacGa77C.36.30.003971
S414Q414KCaaAaa66AY.4.50.000645
S414Q414HcaAcaC36AY.430.000013
S414Q414HcaAcaT36AY.430.000013
S414Q414QcaAcaG66AY.50.000124
S414Q414QcaAcaG66B.10.000055
S414Q414KCaaAaa66B.1.10.000109
S414Q414delCAA---66B.1.1.70.000005
S414Q414RcAacGa55AY.1030.000031
S414Q414KCaaAaa55AY.1200.000186
S414Q414LcAacTa55AY.330.000334
S414Q414XCaaTaa55B.1.10.000091
S414Q414RcAacGa55B.1.1.70.000004
S414Q414KCaaAaa55B.1.177.210.000382
S414Q414HcaAcaT55B.1.6370.000365
S414Q414KCaaAaa44AY.1020.000106
S414Q414HcaAcaT44AY.1190.000141
S414Q414RcAacGa44AY.260.000113
S414Q414KCaaAaa44AY.290.000063
S414Q414KCaaAaa44AY.330.000267
S414Q414QcaAcaG44AY.40.000006
S414Q414RcAacGa44AY.440.000024
S414Q414KCaaAaa44AY.50.000083
S414Q414RcAacGa44AY.99.20.000369
S414Q414XCaaTaa44B.1.1.70.000004
S414Q414LcAacTa44B.1.1.70.000004
S414Q414QcaAcaG44B.1.1770.000053
S414Q414QcaAcaG44B.1.20.000035
S414Q414XCaaTaa44B.1.20.000035
S414Q414LcAacTa44B.1.617.20.000015
S414Q414KCaaAaa44D.20.0003
S414Q414del2cAAc--23All0
S414Q414del2CAa--a13All0
S414Q414KCaaAaa33AY.1010.001471
S414Q414RcAacGa33AY.1020.00008
S414Q414QcaAcaG33AY.1030.000019
S414Q414RcAacGa33AY.1170.000254
S414Q414RcAacGa33AY.250.000018
S414Q414QcaAcaG33AY.250.000018
S414Q414KCaaAaa33AY.420.000121
S414Q414LcAacTa33AY.430.000013
S414Q414RcAacGa33AY.430.000013
S414Q414QcaAcaG33AY.440.000018
S414Q414RcAacGa33AY.510.002727
S414Q414RcAacGa33AY.590.001589
S414Q414KCaaAaa33AY.610.000314
S414Q414RcAacGa33AY.750.000168
S414Q414RcAacGa33AY.920.000862
S414Q414KCaaAaa33B.1.1.3250.076923
S414Q414RcAacGa33B.1.20.000026
S414Q414KCaaAaa33B.1.214.10.06
S414Q414RcAacGa33B.1.3980.008929
S414Q414KCaaAaa33B.40.006623
S414Q414LCAaTTa220.111111
S414Q414ECaaGaa22All0
S414Q414LcAacTa22AY.1030.000012
S414Q414HcaAcaT22AY.1130.000285
S414Q414RcAacGa22AY.1160.000574
S414Q414RcAacGa22AY.200.000078
S414Q414QcaAcaG22AY.230.000139
S414Q414LcAacTa22AY.250.000012
S414Q414KCaaAaa22AY.29.10.000441
S414Q414PcAacCa22AY.30.00002
S414Q414KCaaAaa22AY.340.000194
S414Q414QcaAcaG22AY.390.000049
S414Q414RcAacGa22AY.390.000049
S414Q414LcAacTa22AY.390.000049
S414Q414delCAA---22AY.40.000003
S414Q414HcaAcaC22AY.420.00008
S414Q414XCaaTaa12AY.430.000004
S414Q414XCAaTGa12AY.430.000004
S414Q414RcAacGa22AY.480.00093
S414Q414KCaaAaa22AY.540.000191
S414Q414KCaaAaa22AY.75.10.000361
S414Q414delCAA---22AY.90.000135
S414Q414HcaAcaT22AY.99.20.000184
S414Q414delCAA---22B.10.000018
S414Q414KCaaAaa22B.1.1.10.000653
S414Q414RcAacGa22B.1.1.3480.001592
S414Q414RcAacGa22B.1.1.4340.000697
S414Q414del1cAac-a22B.1.1.70.000002
S414Q414XCaaTaa22B.1.160.200.017857
S414Q414LcAacTa22B.1.177.400.010309
S414Q414del1cAac-a22B.1.20.000018
S414Q414HcaAcaT22B.1.20.000018
S414Q414KCaaAaa22B.1.2140.007326
S414Q414RcAacGa22B.1.2580.000133
S414Q414RcAacGa22B.1.3510.000059
S414Q414KCaaAaa22B.1.4590.008163
S414Q414RcAacGa22B.1.5260.000047
S414Q414XCaaTaa22B.1.5960.000174
S414Q414QcaAcaG22B.1.617.20.000008
S414Q414KCaaAaa22B.390.004662
S414Q414RcAacGa22C.360.001821
S414Q414XCaaTaa22D.20.00015
S414Q414XCaaTaa110.055556
S414Q414ECaaGaa110.055556
S414Q414RcAacGa11A.2.50.000499
S414Q414KCaaAaa11AA.50.016129
S414Q414ACAaGCa11All0
S414Q414GCAAGGC11All0
S414Q414HcaAcaC11AY.1000.000046
S414Q414QcaAcaG11AY.1050.000643
S414Q414KCaaAaa11AY.1070.000466
S414Q414KCaaAaa11AY.1090.00074
S414Q414HcaAcaC11AY.110.001339
S414Q414XCaaTaa11AY.1100.000113
S414Q414LcAacTa11AY.1100.000113
S414Q414KCaaAaa11AY.1140.000231
S414Q414KCaaAaa11AY.1180.000063
S414Q414XCaaTaa11AY.1190.000035
S414Q414QcaAcaG11AY.1190.000035
S414Q414LcAacTa11AY.1190.000035
S414Q414HcaAcaT11AY.1200.000037
S414Q414KCaaAaa11AY.130.000161
S414Q414LcAacTa11AY.140.000088
S414Q414KCaaAaa11AY.16.10.00047
S414Q414XCaaTaa11AY.200.000039
S414Q414XCaaTaa11AY.230.00007
S414Q414KCaaAaa11AY.230.00007
S414Q414RcAacGa11AY.23.10.000417
S414Q414XCaaTaa11AY.250.000006
S414Q414PcAacCa11AY.250.000006
S414Q414HcaAcaC11AY.290.000016
S414Q414RcAacGa11AY.29.10.000221
S414Q414QcaAcaG11AY.30.00001
S414Q414KCaaAaa11AY.3.10.000085
S414Q414RcAacGa11AY.360.000148
S414Q414XCaaTaa11AY.40.000002
S414Q414RcAacGa11AY.4.50.000107
S414Q414LcAacTa11AY.4.50.000107
S414Q414delCAA---11AY.4.50.000107
S414Q414LcAacTa11AY.420.00004
S414Q414delCAA---11AY.430.000004
S414Q414ECaaGaa11AY.430.000004
S414Q414PcAacCa11AY.440.000006
S414Q414HcaAcaC11AY.440.000006
S414Q414RcAacGa11AY.460.000104
S414Q414KCaaAaa11AY.46.30.000934
S414Q414LcAacTa11AY.470.000031
S414Q414QcaAcaG11AY.470.000031
S414Q414LcAacTa11AY.50.000021
S414Q414RcAacGa11AY.50.000021
S414Q414XCaaTaa11AY.5.30.000337
S414Q414KCaaAaa11AY.5.40.000277
S414Q414KCaaAaa11AY.510.000909
S414Q414QcaAcaG11AY.610.000105
S414Q414KCaaAaa11AY.660.00107
S414Q414KCaaAaa11AY.670.000464
S414Q414KCaaAaa11AY.730.000665
S414Q414LcAacTa11AY.750.000056
S414Q414LcAacTa11AY.75.10.00018
S414Q414QcaAcaG11AY.790.001211
S414Q414LcAacTa11AY.840.000437
S414Q414LcAacTa11AY.880.000884
S414Q414RcAacGa11AY.90.000068
S414Q414KCaaAaa11AY.90.000068
S414Q414RcAacGa11AY.9.10.000084
S414Q414RcAacGa11AY.930.000273
S414Q414RcAacGa11AY.98.10.000048
S414Q414RcAacGa11AY.990.001049
S414Q414del1cAac-a11B0.000128
S414Q414XCaaTaa11B0.000128
S414Q414ACAaGCa11B0.000128
S414Q414PcAacCa11B.10.000009
S414Q414del1cAac-a11B.10.000009
S414Q414PcAacCa11B.1.10.000018
S414Q414XCaaTaa11B.1.1.1610.003534
S414Q414KCaaAaa11B.1.1.1640.005155
S414Q414QcaAcaG11B.1.1.1920.002309
S414Q414RcAacGa11B.1.1.1920.002309
S414Q414LcAacTa11B.1.1.2140.000055
S414Q414QcaAcaG11B.1.1.2220.000204
S414Q414QcaAcaG11B.1.1.2280.003049
S414Q414delCAA---11B.1.1.2360.006897
S414Q414RcAacGa11B.1.1.250.000569
S414Q414KCaaAaa11B.1.1.280.000311
S414Q414del2CAa--a11B.1.1.2910.000742
S414Q414KCaaAaa11B.1.1.2940.001266
S414Q414KCaaAaa11B.1.1.2970.002237
S414Q414RcAacGa11B.1.1.3050.003861
S414Q414PcAacCa11B.1.1.3060.000438
S414Q414LcAacTa11B.1.1.3060.000438
S414Q414RcAacGa11B.1.1.3270.1
S414Q414KCaaAaa11B.1.1.3680.003086
S414Q414LcAacTa11B.1.1.370.000193
S414Q414RcAacGa11B.1.1.3770.001381
S414Q414QcaAcaG11B.1.1.4870.005587
S414Q414KCaaAaa11B.1.1.500.000679
S414Q414del2cAAc--11B.1.1.500.000679
S414Q414KCaaAaa11B.1.1.5280.004808
S414Q414RcAacGa11B.1.1.560.017857
S414Q414HcaAcaC11B.1.1.70.000001
S414Q414KCaaAaa11B.1.1.980.018519
S414Q414del1cAac-a11B.1.1100.004525
S414Q414RcAacGa11B.1.1600.000031
S414Q414del1cAac-a11B.1.1600.000031
S414Q414LcAacTa11B.1.160.160.000929
S414Q414RcAacGa11B.1.160.300.002976
S414Q414RcAacGa11B.1.1700.00431
S414Q414KCaaAaa11B.1.1700.00431
S414Q414del1cAac-a11B.1.1770.000013
S414Q414XCaaTaa11B.1.1770.000013
S414Q414LcAacTa11B.1.177.120.000152
S414Q414XCaaTaa11B.1.177.160.000664
S414Q414KCaaAaa11B.1.177.200.001517
S414Q414del1cAac-a11B.1.177.70.000165
S414Q414QcaAcaG11B.1.177.860.000183
S414Q414QcaAcaG11B.1.1890.004292
S414Q414delCAA---11B.1.20.000009
S414Q414XCaaTaa11B.1.2400.000216
S414Q414KCaaAaa11B.1.2430.00007
S414Q414RcAacGa11B.1.2430.00007
S414Q414KCaaAaa11B.1.2580.000067
S414Q414GCAAGGC11B.1.2580.000067
S414Q414XCaaTaa11B.1.2580.000067
S414Q414QcaAcaG11B.1.258.110.000396
S414Q414delCAA---11B.1.3510.00003
S414Q414QcaAcaG11B.1.3510.00003
S414Q414PcAacCa11B.1.36.180.00042
S414Q414QcaAcaG11B.1.36.290.000517
S414Q414KCaaAaa11B.1.3690.000285
S414Q414KCaaAaa11B.1.3960.000706
S414Q414XCaaTaa11B.1.3960.000706
S414Q414XCaaTaa11B.1.3970.004854
S414Q414XCaaTaa11B.1.4270.00005
S414Q414RcAacGa11B.1.4290.000024
S414Q414QcaAcaG11B.1.4290.000024
S414Q414KCaaAaa11B.1.4290.000024
S414Q414XCaaTaa11B.1.4520.013699
S414Q414RcAacGa11B.1.4990.00105
S414Q414XCaaTaa11B.1.5050.004386
S414Q414KCaaAaa11B.1.5240.001406
S414Q414RcAacGa11B.1.5300.007143
S414Q414KCaaAaa11B.1.6090.000479
S414Q414del2cAAc--11B.1.617.20.000004
S414Q414PcAacCa11B.1.617.20.000004
S414Q414delCAA---11B.1.6200.000946
S414Q414QcaAcaG11B.1.6300.005236
S414Q414KCaaAaa11B.1.930.000934
S414Q414XCaaTaa11B.290.003509
S414Q414del1cAac-a11B.30.000831
S414Q414XCaaTaa11B.310.003731
S414Q414XCaaTaa11B.400.000364
S414Q414KCaaAaa11B.400.000364
S414Q414QcaAcaG11B.410.008
S414Q414KCaaAaa11B.530.011765
S414Q414HcaAcaC11C.370.000116
S414Q414KCaaAaa11C.370.000116
S414Q414RcAacGa11C.390.018868
S414Q414LcAacTa11D.20.000075
S414Q414QcaAcaG11D.20.000075
S414Q414RcAacGa11P.10.000016
S414Q414XCaaTaa11P.10.000016
S414Q414KCaaAaa11P.1.170.000162
S414Q414delCAA---11Q.80.000165